2025-06-02T09:44:32,832 Created temporary directory: /tmp/pip-build-tracker-gp80x3u4 2025-06-02T09:44:32,834 Initialized build tracking at /tmp/pip-build-tracker-gp80x3u4 2025-06-02T09:44:32,834 Created build tracker: /tmp/pip-build-tracker-gp80x3u4 2025-06-02T09:44:32,834 Entered build tracker: /tmp/pip-build-tracker-gp80x3u4 2025-06-02T09:44:32,835 Created temporary directory: /tmp/pip-wheel-poy3iquu 2025-06-02T09:44:32,839 Created temporary directory: /tmp/pip-ephem-wheel-cache-u3w700mn 2025-06-02T09:44:32,894 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-06-02T09:44:32,896 2 location(s) to search for versions of bioregistry: 2025-06-02T09:44:32,896 * https://pypi.org/simple/bioregistry/ 2025-06-02T09:44:32,896 * https://www.piwheels.org/simple/bioregistry/ 2025-06-02T09:44:32,897 Fetching project page and analyzing links: https://pypi.org/simple/bioregistry/ 2025-06-02T09:44:32,898 Getting page https://pypi.org/simple/bioregistry/ 2025-06-02T09:44:32,900 Found index url https://pypi.org/simple/ 2025-06-02T09:44:33,197 Fetched page https://pypi.org/simple/bioregistry/ as application/vnd.pypi.simple.v1+json 2025-06-02T09:44:33,368 Skipping link: No binaries permitted for bioregistry: https://files.pythonhosted.org/packages/db/d0/a86cdecb48587601a85457f553bb400d6c26b8dd9526c7cee613f9a11acc/bioregistry-0.0.1-py3-none-any.whl (from https://pypi.org/simple/bioregistry/) (requires-python:>=3.6) 2025-06-02T09:44:33,369 Found link https://files.pythonhosted.org/packages/36/70/31f7d80ee4f06918575944c9f52d80105e9b66930a0987706e573b09d2be/bioregistry-0.0.1.tar.gz (from https://pypi.org/simple/bioregistry/) (requires-python:>=3.6), version: 0.0.1 2025-06-02T09:44:33,370 Skipping link: No binaries permitted for bioregistry: https://files.pythonhosted.org/packages/33/f0/69edff7c26432308a6af2dbc37e90d95e5e4c7214483a5d55da5914f9892/bioregistry-0.0.2-py3-none-any.whl (from https://pypi.org/simple/bioregistry/) 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https://files.pythonhosted.org/packages/f2/19/b5dc347b4813cb0e2ebdbacf53cebb9e00dbf396b54b51dfb2e66f6eec8b/bioregistry-0.12.31.tar.gz (from https://pypi.org/simple/bioregistry/) (requires-python:>=3.9), version: 0.12.31 2025-06-02T09:44:34,613 Fetching project page and analyzing links: https://www.piwheels.org/simple/bioregistry/ 2025-06-02T09:44:34,614 Getting page https://www.piwheels.org/simple/bioregistry/ 2025-06-02T09:44:34,615 Found index url https://www.piwheels.org/simple/ 2025-06-02T09:44:34,787 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/bioregistry/ 2025-06-02T09:44:35,450 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/bioregistry/ 2025-06-02T09:44:36,623 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/bioregistry/ 2025-06-02T09:44:38,801 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/bioregistry/ 2025-06-02T09:44:42,973 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/bioregistry/ 2025-06-02T09:44:43,144 Could not fetch URL https://www.piwheels.org/simple/bioregistry/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/bioregistry/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping 2025-06-02T09:44:43,146 Skipping link: not a file: https://www.piwheels.org/simple/bioregistry/ 2025-06-02T09:44:43,147 Skipping link: not a file: https://pypi.org/simple/bioregistry/ 2025-06-02T09:44:43,254 Given no hashes to check 1 links for project 'bioregistry': discarding no candidates 2025-06-02T09:44:43,259 Collecting bioregistry==0.12.11 2025-06-02T09:44:43,261 Created temporary directory: /tmp/pip-unpack-u8ode7gm 2025-06-02T09:44:44,009 Downloading bioregistry-0.12.11.tar.gz (6.2 MB) 2025-06-02T09:44:46,486 Added bioregistry==0.12.11 from https://files.pythonhosted.org/packages/20/47/8ab0889d99fb9ae27df0c487fec4641cab15b92227a998f31ccdbdfe7f55/bioregistry-0.12.11.tar.gz to build tracker '/tmp/pip-build-tracker-gp80x3u4' 2025-06-02T09:44:46,495 Created temporary directory: /tmp/pip-build-env-jlt5bf5b 2025-06-02T09:44:46,501 Installing build dependencies: started 2025-06-02T09:44:46,502 Running command pip subprocess to install build dependencies 2025-06-02T09:44:47,630 Using pip 25.2 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2025-06-02T09:44:47,631 Non-user install by explicit request 2025-06-02T09:44:48,087 Created build tracker: /tmp/pip-build-tracker-gp80x3u4 2025-06-02T09:44:48,088 Entered build tracker: /tmp/pip-build-tracker-gp80x3u4 2025-06-02T09:44:48,090 Created temporary directory: /tmp/pip-install-97l18dq0 2025-06-02T09:44:48,095 Created temporary directory: /tmp/pip-ephem-wheel-cache-ezzwi450 2025-06-02T09:44:48,142 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-06-02T09:44:48,144 2 location(s) to search for versions of setuptools: 2025-06-02T09:44:48,145 * https://pypi.org/simple/setuptools/ 2025-06-02T09:44:48,145 * https://www.piwheels.org/simple/setuptools/ 2025-06-02T09:44:48,146 Fetching project page and analyzing links: https://pypi.org/simple/setuptools/ 2025-06-02T09:44:48,146 Getting page https://pypi.org/simple/setuptools/ 2025-06-02T09:44:48,148 Found index url https://pypi.org/simple/ 2025-06-02T09:44:48,150 Looking up "https://pypi.org/simple/setuptools/" in the cache 2025-06-02T09:44:48,151 Request header has "max_age" as 0, cache bypassed 2025-06-02T09:44:48,155 Starting new HTTPS connection (1): pypi.org:443 2025-06-02T09:44:48,299 https://pypi.org:443 "GET /simple/setuptools/ HTTP/1.1" 304 0 2025-06-02T09:44:48,318 Fetched page https://pypi.org/simple/setuptools/ as application/vnd.pypi.simple.v1+json 2025-06-02T09:44:48,474 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/77/38/90cae8fd99c5dc402d25930e1c91f5fcf6de5c8e982fd152a5a061e3df56/setuptools-0.6b1-py2.3.egg (from https://pypi.org/simple/setuptools/) 2025-06-02T09:44:48,475 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/1f/ab/1ed6131b5112d1d47cb89e1cbea08f783f0ed49d6fc795ed2ff63f84d20c/setuptools-0.6b1-py2.4.egg (from https://pypi.org/simple/setuptools/) 2025-06-02T09:44:48,475 Found link https://files.pythonhosted.org/packages/82/cb/906d051fdf1c8b7703d288d3cc44ff32746090378f7f8539c8476a21ce9a/setuptools-0.6b1.zip (from https://pypi.org/simple/setuptools/), version: 0.6b1 2025-06-02T09:44:48,476 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/61/52/c84d22f3669ea8d4e54126f6241d7ed9828e3a382596f170043dfdaddbcc/setuptools-0.6b2-py2.3.egg (from https://pypi.org/simple/setuptools/) 2025-06-02T09:44:48,477 Skipping link: unsupported archive format: .egg: 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https://files.pythonhosted.org/packages/18/5d/3bf57dcd21979b887f014ea83c24ae194cfcd12b9e0fda66b957c69d1fca/setuptools-80.9.0.tar.gz (from https://pypi.org/simple/setuptools/) (requires-python:>=3.9), version: 80.9.0 2025-06-02T09:44:49,856 Fetching project page and analyzing links: https://www.piwheels.org/simple/setuptools/ 2025-06-02T09:44:49,857 Getting page https://www.piwheels.org/simple/setuptools/ 2025-06-02T09:44:49,858 Found index url https://www.piwheels.org/simple/ 2025-06-02T09:44:49,860 Looking up "https://www.piwheels.org/simple/setuptools/" in the cache 2025-06-02T09:44:49,860 Request header has "max_age" as 0, cache bypassed 2025-06-02T09:44:49,862 No cache entry available 2025-06-02T09:44:49,863 Starting new HTTPS connection (1): www.piwheels.org:443 2025-06-02T09:44:50,014 Incremented Retry for (url='/simple/setuptools/'): Retry(total=4, connect=None, read=None, redirect=None, status=None) 2025-06-02T09:44:50,015 WARNING: Retrying (Retry(total=4, connect=None, 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2025-06-02T09:44:51,849 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/setuptools/ 2025-06-02T09:44:51,851 Starting new HTTPS connection (4): www.piwheels.org:443 2025-06-02T09:44:52,015 Incremented Retry for (url='/simple/setuptools/'): Retry(total=1, connect=None, read=None, redirect=None, status=None) 2025-06-02T09:44:54,017 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/setuptools/ 2025-06-02T09:44:54,019 Starting new HTTPS connection (5): www.piwheels.org:443 2025-06-02T09:44:54,186 Incremented Retry for (url='/simple/setuptools/'): Retry(total=0, connect=None, read=None, redirect=None, status=None) 2025-06-02T09:44:58,188 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/setuptools/ 2025-06-02T09:44:58,189 Starting new HTTPS connection (6): www.piwheels.org:443 2025-06-02T09:44:58,375 Could not fetch URL https://www.piwheels.org/simple/setuptools/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/setuptools/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping 2025-06-02T09:44:58,376 Skipping link: not a file: https://www.piwheels.org/simple/setuptools/ 2025-06-02T09:44:58,377 Skipping link: 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https://pypi.org/simple/wheel/) (requires-python:>=3.7), version: 0.38.2 2025-06-02T09:44:58,787 Found link https://files.pythonhosted.org/packages/a4/5b/0718aa11e3360f97feb81ddcb19cbb9306df0a17bef7c360f8939d2629b8/wheel-0.38.2.tar.gz (from https://pypi.org/simple/wheel/) (requires-python:>=3.7), version: 0.38.2 2025-06-02T09:44:58,788 Found link https://files.pythonhosted.org/packages/3b/48/7a4e6e610cfbc71d727ac58ddc9abe0daf5772b81d5630a4aef9e919ad46/wheel-0.38.3-py3-none-any.whl (from https://pypi.org/simple/wheel/) (requires-python:>=3.7), version: 0.38.3 2025-06-02T09:44:58,789 Found link https://files.pythonhosted.org/packages/2e/c6/af5def6796940a8bd602d815f7f495f32d833c81b38d055ca0b23ab3b804/wheel-0.38.3.tar.gz (from https://pypi.org/simple/wheel/) (requires-python:>=3.7), version: 0.38.3 2025-06-02T09:44:58,790 Found link https://files.pythonhosted.org/packages/bd/7c/d38a0b30ce22fc26ed7dbc087c6d00851fb3395e9d0dac40bec1f905030c/wheel-0.38.4-py3-none-any.whl (from https://pypi.org/simple/wheel/) (requires-python:>=3.7), version: 0.38.4 2025-06-02T09:44:58,791 Found link https://files.pythonhosted.org/packages/a2/b8/6a06ff0f13a00fc3c3e7d222a995526cbca26c1ad107691b6b1badbbabf1/wheel-0.38.4.tar.gz (from https://pypi.org/simple/wheel/) (requires-python:>=3.7), version: 0.38.4 2025-06-02T09:44:58,792 Found link https://files.pythonhosted.org/packages/61/86/cc8d1ff2ca31a312a25a708c891cf9facbad4eae493b3872638db6785eb5/wheel-0.40.0-py3-none-any.whl (from https://pypi.org/simple/wheel/) (requires-python:>=3.7), version: 0.40.0 2025-06-02T09:44:58,793 Found link https://files.pythonhosted.org/packages/fc/ef/0335f7217dd1e8096a9e8383e1d472aa14717878ffe07c4772e68b6e8735/wheel-0.40.0.tar.gz (from https://pypi.org/simple/wheel/) (requires-python:>=3.7), version: 0.40.0 2025-06-02T09:44:58,794 Found link https://files.pythonhosted.org/packages/17/11/f139e25018ea2218aeedbedcf85cd0dd8abeed29a38ac1fda7f5a8889382/wheel-0.41.0-py3-none-any.whl (from https://pypi.org/simple/wheel/) (requires-python:>=3.7), version: 0.41.0 2025-06-02T09:44:58,794 Found link https://files.pythonhosted.org/packages/ec/34/903929e15b2657335b2ce8723d92fc804d3569b7ac0f1f8877ed1a7b2024/wheel-0.41.0.tar.gz (from https://pypi.org/simple/wheel/) (requires-python:>=3.7), version: 0.41.0 2025-06-02T09:44:58,795 Found link https://files.pythonhosted.org/packages/28/f5/6955d7b3a5d71ce6bac104f9cf98c1b0513ad656cdaca8ea7d579196f771/wheel-0.41.1-py3-none-any.whl (from https://pypi.org/simple/wheel/) (requires-python:>=3.7), version: 0.41.1 2025-06-02T09:44:58,796 Found link https://files.pythonhosted.org/packages/c9/3d/02a14af2b413d7abf856083f327744d286f4468365cddace393a43d9d540/wheel-0.41.1.tar.gz (from https://pypi.org/simple/wheel/) (requires-python:>=3.7), version: 0.41.1 2025-06-02T09:44:58,797 Found link https://files.pythonhosted.org/packages/b8/8b/31273bf66016be6ad22bb7345c37ff350276cfd46e389a0c2ac5da9d9073/wheel-0.41.2-py3-none-any.whl (from https://pypi.org/simple/wheel/) (requires-python:>=3.7), version: 0.41.2 2025-06-02T09:44:58,798 Found link https://files.pythonhosted.org/packages/a4/99/78c4f3bd50619d772168bec6a0f34379b02c19c9cced0ed833ecd021fd0d/wheel-0.41.2.tar.gz (from https://pypi.org/simple/wheel/) (requires-python:>=3.7), version: 0.41.2 2025-06-02T09:44:58,799 Found link https://files.pythonhosted.org/packages/fa/7f/4c07234086edbce4a0a446209dc0cb08a19bb206a3ea53b2f56a403f983b/wheel-0.41.3-py3-none-any.whl (from https://pypi.org/simple/wheel/) (requires-python:>=3.7), version: 0.41.3 2025-06-02T09:44:58,800 Found link https://files.pythonhosted.org/packages/fb/d0/0b4c18a0b85c20233b0c3bc33f792aefd7f12a5832b4da77419949ff6fd9/wheel-0.41.3.tar.gz (from https://pypi.org/simple/wheel/) (requires-python:>=3.7), version: 0.41.3 2025-06-02T09:44:58,801 Found link https://files.pythonhosted.org/packages/c7/c3/55076fc728723ef927521abaa1955213d094933dc36d4a2008d5101e1af5/wheel-0.42.0-py3-none-any.whl (from https://pypi.org/simple/wheel/) (requires-python:>=3.7), version: 0.42.0 2025-06-02T09:44:58,801 Found link https://files.pythonhosted.org/packages/b0/b4/bc2baae3970c282fae6c2cb8e0f179923dceb7eaffb0e76170628f9af97b/wheel-0.42.0.tar.gz (from https://pypi.org/simple/wheel/) (requires-python:>=3.7), version: 0.42.0 2025-06-02T09:44:58,802 Found link https://files.pythonhosted.org/packages/7d/cd/d7460c9a869b16c3dd4e1e403cce337df165368c71d6af229a74699622ce/wheel-0.43.0-py3-none-any.whl (from https://pypi.org/simple/wheel/) (requires-python:>=3.8), version: 0.43.0 2025-06-02T09:44:58,803 Found link https://files.pythonhosted.org/packages/b8/d6/ac9cd92ea2ad502ff7c1ab683806a9deb34711a1e2bd8a59814e8fc27e69/wheel-0.43.0.tar.gz (from https://pypi.org/simple/wheel/) (requires-python:>=3.8), version: 0.43.0 2025-06-02T09:44:58,804 Found link https://files.pythonhosted.org/packages/1b/d1/9babe2ccaecff775992753d8686970b1e2755d21c8a63be73aba7a4e7d77/wheel-0.44.0-py3-none-any.whl (from https://pypi.org/simple/wheel/) (requires-python:>=3.8), version: 0.44.0 2025-06-02T09:44:58,805 Found link https://files.pythonhosted.org/packages/b7/a0/95e9e962c5fd9da11c1e28aa4c0d8210ab277b1ada951d2aee336b505813/wheel-0.44.0.tar.gz (from https://pypi.org/simple/wheel/) (requires-python:>=3.8), version: 0.44.0 2025-06-02T09:44:58,806 Found link https://files.pythonhosted.org/packages/92/81/65ae90d584a73ca976d8f1eb83e2f58447a4055a9fb3ae69b28721070bdf/wheel-0.45.0-py3-none-any.whl (from https://pypi.org/simple/wheel/) (requires-python:>=3.8), version: 0.45.0 2025-06-02T09:44:58,807 Found link https://files.pythonhosted.org/packages/e7/52/fd4516fb8f7d11a08e3f9cd69eb1558f098ab67e79f32d920c4974ee550f/wheel-0.45.0.tar.gz (from https://pypi.org/simple/wheel/) (requires-python:>=3.8), version: 0.45.0 2025-06-02T09:44:58,808 Found link https://files.pythonhosted.org/packages/0b/2c/87f3254fd8ffd29e4c02732eee68a83a1d3c346ae39bc6822dcbcb697f2b/wheel-0.45.1-py3-none-any.whl (from https://pypi.org/simple/wheel/) (requires-python:>=3.8), version: 0.45.1 2025-06-02T09:44:58,808 Found link https://files.pythonhosted.org/packages/8a/98/2d9906746cdc6a6ef809ae6338005b3f21bb568bea3165cfc6a243fdc25c/wheel-0.45.1.tar.gz (from https://pypi.org/simple/wheel/) (requires-python:>=3.8), version: 0.45.1 2025-06-02T09:44:58,809 Found link https://files.pythonhosted.org/packages/f2/67/b488d1c2408bc619bdd9f8c929e67d7743087dfa00bbdc0c0c5db70161f9/wheel-0.46.0-py3-none-any.whl (from https://pypi.org/simple/wheel/) (requires-python:>=3.9), version: 0.46.0 2025-06-02T09:44:58,810 Found link https://files.pythonhosted.org/packages/11/d9/f16ef50f69f8b85961f8df7a2bdad08a98a32e79dfabf9f14f250fc0324d/wheel-0.46.0.tar.gz (from https://pypi.org/simple/wheel/) (requires-python:>=3.9), version: 0.46.0 2025-06-02T09:44:58,811 Found link https://files.pythonhosted.org/packages/af/44/31d964a260fcda6bf2f59384231bbf4962ac796a5d36c554162b5411b8db/wheel-0.46.1-py3-none-any.whl (from https://pypi.org/simple/wheel/) (requires-python:>=3.9), version: 0.46.1 2025-06-02T09:44:58,812 Found link https://files.pythonhosted.org/packages/fb/62/e90918c4558b002726ab930863c0cbd3e7cf9a7befa1d4a1a240cecdb379/wheel-0.46.1.tar.gz (from https://pypi.org/simple/wheel/) (requires-python:>=3.9), version: 0.46.1 2025-06-02T09:44:58,813 Fetching project page and analyzing links: https://www.piwheels.org/simple/wheel/ 2025-06-02T09:44:58,814 Getting page https://www.piwheels.org/simple/wheel/ 2025-06-02T09:44:58,815 Found index url https://www.piwheels.org/simple/ 2025-06-02T09:44:58,816 Looking up "https://www.piwheels.org/simple/wheel/" in the cache 2025-06-02T09:44:58,817 Request header has "max_age" as 0, cache bypassed 2025-06-02T09:44:58,818 No cache entry available 2025-06-02T09:44:58,819 Starting new HTTPS connection (7): www.piwheels.org:443 2025-06-02T09:44:58,979 Incremented Retry for (url='/simple/wheel/'): Retry(total=4, connect=None, read=None, redirect=None, status=None) 2025-06-02T09:44:58,980 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/wheel/ 2025-06-02T09:44:58,981 Starting new HTTPS connection (8): www.piwheels.org:443 2025-06-02T09:44:59,133 Incremented Retry for (url='/simple/wheel/'): Retry(total=3, connect=None, read=None, redirect=None, status=None) 2025-06-02T09:44:59,635 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/wheel/ 2025-06-02T09:44:59,637 Starting new HTTPS connection (9): www.piwheels.org:443 2025-06-02T09:44:59,805 Incremented Retry for (url='/simple/wheel/'): Retry(total=2, connect=None, read=None, redirect=None, status=None) 2025-06-02T09:45:00,807 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/wheel/ 2025-06-02T09:45:00,809 Starting new HTTPS connection (10): www.piwheels.org:443 2025-06-02T09:45:00,976 Incremented Retry for (url='/simple/wheel/'): Retry(total=1, connect=None, read=None, redirect=None, status=None) 2025-06-02T09:45:02,978 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/wheel/ 2025-06-02T09:45:02,980 Starting new HTTPS connection (11): www.piwheels.org:443 2025-06-02T09:45:03,147 Incremented Retry for (url='/simple/wheel/'): Retry(total=0, connect=None, read=None, redirect=None, status=None) 2025-06-02T09:45:07,149 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/wheel/ 2025-06-02T09:45:07,150 Starting new HTTPS connection (12): www.piwheels.org:443 2025-06-02T09:45:07,326 Could not fetch URL https://www.piwheels.org/simple/wheel/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/wheel/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping 2025-06-02T09:45:07,327 Skipping link: not a file: https://www.piwheels.org/simple/wheel/ 2025-06-02T09:45:07,328 Skipping link: not a file: https://pypi.org/simple/wheel/ 2025-06-02T09:45:07,336 Given no hashes to check 142 links for project 'wheel': discarding no candidates 2025-06-02T09:45:07,355 Collecting wheel 2025-06-02T09:45:07,356 Obtaining dependency information for wheel from https://files.pythonhosted.org/packages/0b/2c/87f3254fd8ffd29e4c02732eee68a83a1d3c346ae39bc6822dcbcb697f2b/wheel-0.45.1-py3-none-any.whl.metadata 2025-06-02T09:45:07,357 Created temporary directory: /tmp/pip-unpack-6gyk35nn 2025-06-02T09:45:07,359 Looking up "https://files.pythonhosted.org/packages/0b/2c/87f3254fd8ffd29e4c02732eee68a83a1d3c346ae39bc6822dcbcb697f2b/wheel-0.45.1-py3-none-any.whl.metadata" in the cache 2025-06-02T09:45:07,364 Current age based on date: 0 2025-06-02T09:45:07,365 Ignoring unknown cache-control directive: immutable 2025-06-02T09:45:07,365 Freshness lifetime from max-age: 365000000 2025-06-02T09:45:07,366 The response is "fresh", returning cached response 2025-06-02T09:45:07,366 365000000 > 0 2025-06-02T09:45:07,368 Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB) 2025-06-02T09:45:07,371 Created temporary directory: /tmp/pip-metadata-r5egf198 2025-06-02T09:45:07,385 Created temporary directory: /tmp/pip-unpack-pvbz5r4f 2025-06-02T09:45:07,388 Looking up "https://files.pythonhosted.org/packages/a3/dc/17031897dae0efacfea57dfd3a82fdd2a2aeb58e0ff71b77b87e44edc772/setuptools-80.9.0-py3-none-any.whl" in the cache 2025-06-02T09:45:07,391 Current age based on date: 0 2025-06-02T09:45:07,392 Ignoring unknown cache-control directive: immutable 2025-06-02T09:45:07,393 Freshness lifetime from max-age: 365000000 2025-06-02T09:45:07,394 The response is "fresh", returning cached response 2025-06-02T09:45:07,395 365000000 > 0 2025-06-02T09:45:07,396 Using cached setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2025-06-02T09:45:07,417 Downloading link https://files.pythonhosted.org/packages/a3/dc/17031897dae0efacfea57dfd3a82fdd2a2aeb58e0ff71b77b87e44edc772/setuptools-80.9.0-py3-none-any.whl (from https://pypi.org/simple/setuptools/) (requires-python:>=3.9) to /tmp/pip-unpack-pvbz5r4f/setuptools-80.9.0-py3-none-any.whl 2025-06-02T09:45:07,419 Looking up "https://files.pythonhosted.org/packages/0b/2c/87f3254fd8ffd29e4c02732eee68a83a1d3c346ae39bc6822dcbcb697f2b/wheel-0.45.1-py3-none-any.whl" in the cache 2025-06-02T09:45:07,422 Current age based on date: 0 2025-06-02T09:45:07,423 Ignoring unknown cache-control directive: immutable 2025-06-02T09:45:07,424 Freshness lifetime from max-age: 365000000 2025-06-02T09:45:07,424 The response is "fresh", returning cached response 2025-06-02T09:45:07,425 365000000 > 0 2025-06-02T09:45:07,427 Using cached wheel-0.45.1-py3-none-any.whl (72 kB) 2025-06-02T09:45:07,430 Downloading link https://files.pythonhosted.org/packages/0b/2c/87f3254fd8ffd29e4c02732eee68a83a1d3c346ae39bc6822dcbcb697f2b/wheel-0.45.1-py3-none-any.whl (from https://pypi.org/simple/wheel/) (requires-python:>=3.8) to /tmp/pip-unpack-pvbz5r4f/wheel-0.45.1-py3-none-any.whl 2025-06-02T09:45:08,037 Installing collected packages: wheel, setuptools 2025-06-02T09:45:08,105 Creating /tmp/pip-build-env-jlt5bf5b/overlay/local/bin 2025-06-02T09:45:08,107 changing mode of /tmp/pip-build-env-jlt5bf5b/overlay/local/bin/wheel to 755 2025-06-02T09:45:09,195 Successfully installed setuptools-80.9.0 wheel-0.45.1 2025-06-02T09:45:09,197 Removed build tracker: '/tmp/pip-build-tracker-gp80x3u4' 2025-06-02T09:45:09,412 Installing build dependencies: finished with status 'done' 2025-06-02T09:45:09,415 Getting requirements to build wheel: started 2025-06-02T09:45:09,416 Running command Getting requirements to build wheel 2025-06-02T09:45:11,171 /tmp/pip-build-env-jlt5bf5b/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-06-02T09:45:11,172 !! 2025-06-02T09:45:11,173 ******************************************************************************** 2025-06-02T09:45:11,174 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-06-02T09:45:11,175 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-06-02T09:45:11,176 or your builds will no longer be supported. 2025-06-02T09:45:11,178 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-02T09:45:11,178 ******************************************************************************** 2025-06-02T09:45:11,180 !! 2025-06-02T09:45:11,180 corresp(dist, value, root_dir) 2025-06-02T09:45:11,518 /tmp/pip-build-env-jlt5bf5b/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-06-02T09:45:11,519 !! 2025-06-02T09:45:11,520 ******************************************************************************** 2025-06-02T09:45:11,521 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-06-02T09:45:11,522 License :: OSI Approved :: MIT License 2025-06-02T09:45:11,523 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-02T09:45:11,524 ******************************************************************************** 2025-06-02T09:45:11,525 !! 2025-06-02T09:45:11,526 dist._finalize_license_expression() 2025-06-02T09:45:11,527 /tmp/pip-build-env-jlt5bf5b/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-06-02T09:45:11,528 !! 2025-06-02T09:45:11,529 ******************************************************************************** 2025-06-02T09:45:11,529 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-06-02T09:45:11,530 License :: OSI Approved :: MIT License 2025-06-02T09:45:11,531 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-02T09:45:11,532 ******************************************************************************** 2025-06-02T09:45:11,533 !! 2025-06-02T09:45:11,533 self._finalize_license_expression() 2025-06-02T09:45:11,534 running egg_info 2025-06-02T09:45:11,540 writing src/bioregistry.egg-info/PKG-INFO 2025-06-02T09:45:11,560 writing dependency_links to src/bioregistry.egg-info/dependency_links.txt 2025-06-02T09:45:11,562 writing entry points to src/bioregistry.egg-info/entry_points.txt 2025-06-02T09:45:11,572 writing requirements to src/bioregistry.egg-info/requires.txt 2025-06-02T09:45:11,573 writing top-level names to src/bioregistry.egg-info/top_level.txt 2025-06-02T09:45:11,686 reading manifest file 'src/bioregistry.egg-info/SOURCES.txt' 2025-06-02T09:45:11,708 reading manifest template 'MANIFEST.in' 2025-06-02T09:45:11,763 warning: no files found matching 'Makefile' under directory 'docs' 2025-06-02T09:45:11,790 warning: no previously-included files matching '*.png' found under directory 'docs/img' 2025-06-02T09:45:11,793 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2025-06-02T09:45:11,796 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2025-06-02T09:45:11,799 warning: no previously-included files matching '*.so' found anywhere in distribution 2025-06-02T09:45:11,803 warning: no previously-included files matching '*.dylib' found anywhere in distribution 2025-06-02T09:45:11,805 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2025-06-02T09:45:11,808 warning: no previously-included files matching '*.gpickle' found anywhere in distribution 2025-06-02T09:45:11,810 no previously-included directories found matching 'docs/build' 2025-06-02T09:45:11,811 no previously-included directories found matching 'docs/_data' 2025-06-02T09:45:11,812 no previously-included directories found matching 'docs/source/api' 2025-06-02T09:45:11,814 no previously-included directories found matching 'exports' 2025-06-02T09:45:11,815 no previously-included directories found matching 'notebooks' 2025-06-02T09:45:11,817 no previously-included directories found matching 'tests/.pytest_cache' 2025-06-02T09:45:11,818 no previously-included directories found matching 'docs/.well-known' 2025-06-02T09:45:11,819 warning: no previously-included files found matching 'docs/*.md' 2025-06-02T09:45:11,821 warning: no previously-included files found matching 'docs/guides/*.md' 2025-06-02T09:45:11,822 warning: no previously-included files found matching 'docs/_config.yml' 2025-06-02T09:45:11,824 warning: no previously-included files found matching '.appveyor.yml' 2025-06-02T09:45:11,825 warning: no previously-included files found matching '.bumpversion.cfg' 2025-06-02T09:45:11,826 warning: no previously-included files found matching '.coveragerc' 2025-06-02T09:45:11,828 warning: no previously-included files found matching '.flake8' 2025-06-02T09:45:11,829 warning: no previously-included files found matching '.travis.yml' 2025-06-02T09:45:11,830 warning: no previously-included files found matching '.readthedocs.yml' 2025-06-02T09:45:11,831 warning: no previously-included files found matching 'tox.ini' 2025-06-02T09:45:11,832 warning: no previously-included files found matching '.pre-commit-config.yaml' 2025-06-02T09:45:11,834 warning: no previously-included files found matching 'Dockerfile' 2025-06-02T09:45:11,835 warning: no previously-included files found matching 'CITATION.cff' 2025-06-02T09:45:11,836 warning: no files found matching '*.rst' 2025-06-02T09:45:11,837 adding license file 'LICENSE' 2025-06-02T09:45:11,855 writing manifest file 'src/bioregistry.egg-info/SOURCES.txt' 2025-06-02T09:45:11,960 Getting requirements to build wheel: finished with status 'done' 2025-06-02T09:45:11,963 Created temporary directory: /tmp/pip-modern-metadata-ubwd9i5i 2025-06-02T09:45:11,965 Preparing metadata (pyproject.toml): started 2025-06-02T09:45:11,966 Running command Preparing metadata (pyproject.toml) 2025-06-02T09:45:12,573 /tmp/pip-build-env-jlt5bf5b/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-06-02T09:45:12,574 !! 2025-06-02T09:45:12,575 ******************************************************************************** 2025-06-02T09:45:12,575 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-06-02T09:45:12,576 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-06-02T09:45:12,577 or your builds will no longer be supported. 2025-06-02T09:45:12,578 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-02T09:45:12,578 ******************************************************************************** 2025-06-02T09:45:12,579 !! 2025-06-02T09:45:12,580 corresp(dist, value, root_dir) 2025-06-02T09:45:12,666 /tmp/pip-build-env-jlt5bf5b/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-06-02T09:45:12,666 !! 2025-06-02T09:45:12,668 ******************************************************************************** 2025-06-02T09:45:12,668 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-06-02T09:45:12,670 License :: OSI Approved :: MIT License 2025-06-02T09:45:12,671 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-02T09:45:12,672 ******************************************************************************** 2025-06-02T09:45:12,673 !! 2025-06-02T09:45:12,674 dist._finalize_license_expression() 2025-06-02T09:45:12,674 /tmp/pip-build-env-jlt5bf5b/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-06-02T09:45:12,675 !! 2025-06-02T09:45:12,676 ******************************************************************************** 2025-06-02T09:45:12,677 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-06-02T09:45:12,678 License :: OSI Approved :: MIT License 2025-06-02T09:45:12,679 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-02T09:45:12,680 ******************************************************************************** 2025-06-02T09:45:12,681 !! 2025-06-02T09:45:12,682 self._finalize_license_expression() 2025-06-02T09:45:12,683 running dist_info 2025-06-02T09:45:12,696 creating /tmp/pip-modern-metadata-ubwd9i5i/bioregistry.egg-info 2025-06-02T09:45:12,697 writing /tmp/pip-modern-metadata-ubwd9i5i/bioregistry.egg-info/PKG-INFO 2025-06-02T09:45:12,718 writing dependency_links to /tmp/pip-modern-metadata-ubwd9i5i/bioregistry.egg-info/dependency_links.txt 2025-06-02T09:45:12,720 writing entry points to /tmp/pip-modern-metadata-ubwd9i5i/bioregistry.egg-info/entry_points.txt 2025-06-02T09:45:12,730 writing requirements to /tmp/pip-modern-metadata-ubwd9i5i/bioregistry.egg-info/requires.txt 2025-06-02T09:45:12,731 writing top-level names to /tmp/pip-modern-metadata-ubwd9i5i/bioregistry.egg-info/top_level.txt 2025-06-02T09:45:12,733 writing manifest file '/tmp/pip-modern-metadata-ubwd9i5i/bioregistry.egg-info/SOURCES.txt' 2025-06-02T09:45:12,831 reading manifest file '/tmp/pip-modern-metadata-ubwd9i5i/bioregistry.egg-info/SOURCES.txt' 2025-06-02T09:45:12,834 reading manifest template 'MANIFEST.in' 2025-06-02T09:45:12,888 warning: no files found matching 'Makefile' under directory 'docs' 2025-06-02T09:45:12,910 warning: no previously-included files matching '*.png' found under directory 'docs/img' 2025-06-02T09:45:12,913 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2025-06-02T09:45:12,915 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2025-06-02T09:45:12,917 warning: no previously-included files matching '*.so' found anywhere in distribution 2025-06-02T09:45:12,919 warning: no previously-included files matching '*.dylib' found anywhere in distribution 2025-06-02T09:45:12,920 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2025-06-02T09:45:12,923 warning: no previously-included files matching '*.gpickle' found anywhere in distribution 2025-06-02T09:45:12,924 no previously-included directories found matching 'docs/build' 2025-06-02T09:45:12,925 no previously-included directories found matching 'docs/_data' 2025-06-02T09:45:12,926 no previously-included directories found matching 'docs/source/api' 2025-06-02T09:45:12,927 no previously-included directories found matching 'exports' 2025-06-02T09:45:12,929 no previously-included directories found matching 'notebooks' 2025-06-02T09:45:12,930 no previously-included directories found matching 'tests/.pytest_cache' 2025-06-02T09:45:12,931 no previously-included directories found matching 'docs/.well-known' 2025-06-02T09:45:12,932 warning: no previously-included files found matching 'docs/*.md' 2025-06-02T09:45:12,933 warning: no previously-included files found matching 'docs/guides/*.md' 2025-06-02T09:45:12,934 warning: no previously-included files found matching 'docs/_config.yml' 2025-06-02T09:45:12,936 warning: no previously-included files found matching '.appveyor.yml' 2025-06-02T09:45:12,937 warning: no previously-included files found matching '.bumpversion.cfg' 2025-06-02T09:45:12,937 warning: no previously-included files found matching '.coveragerc' 2025-06-02T09:45:12,938 warning: no previously-included files found matching '.flake8' 2025-06-02T09:45:12,939 warning: no previously-included files found matching '.travis.yml' 2025-06-02T09:45:12,940 warning: no previously-included files found matching '.readthedocs.yml' 2025-06-02T09:45:12,941 warning: no previously-included files found matching 'tox.ini' 2025-06-02T09:45:12,941 warning: no previously-included files found matching '.pre-commit-config.yaml' 2025-06-02T09:45:12,942 warning: no previously-included files found matching 'Dockerfile' 2025-06-02T09:45:12,943 warning: no previously-included files found matching 'CITATION.cff' 2025-06-02T09:45:12,944 warning: no files found matching '*.rst' 2025-06-02T09:45:12,945 adding license file 'LICENSE' 2025-06-02T09:45:12,959 writing manifest file '/tmp/pip-modern-metadata-ubwd9i5i/bioregistry.egg-info/SOURCES.txt' 2025-06-02T09:45:12,961 creating '/tmp/pip-modern-metadata-ubwd9i5i/bioregistry-0.12.11.dist-info' 2025-06-02T09:45:13,092 Preparing metadata (pyproject.toml): finished with status 'done' 2025-06-02T09:45:13,100 Source in /tmp/pip-wheel-poy3iquu/bioregistry_2ec56dfcee064f989353d0e8febbb427 has version 0.12.11, which satisfies requirement bioregistry==0.12.11 from https://files.pythonhosted.org/packages/20/47/8ab0889d99fb9ae27df0c487fec4641cab15b92227a998f31ccdbdfe7f55/bioregistry-0.12.11.tar.gz 2025-06-02T09:45:13,101 Removed bioregistry==0.12.11 from https://files.pythonhosted.org/packages/20/47/8ab0889d99fb9ae27df0c487fec4641cab15b92227a998f31ccdbdfe7f55/bioregistry-0.12.11.tar.gz from build tracker '/tmp/pip-build-tracker-gp80x3u4' 2025-06-02T09:45:13,134 Created temporary directory: /tmp/pip-unpack-6tejy5yo 2025-06-02T09:45:13,135 Created temporary directory: /tmp/pip-unpack-q_cj4fr0 2025-06-02T09:45:13,136 Building wheels for collected packages: bioregistry 2025-06-02T09:45:13,140 Created temporary directory: /tmp/pip-wheel-qea4g9xv 2025-06-02T09:45:13,141 Destination directory: /tmp/pip-wheel-qea4g9xv 2025-06-02T09:45:13,143 Building wheel for bioregistry (pyproject.toml): started 2025-06-02T09:45:13,144 Running command Building wheel for bioregistry (pyproject.toml) 2025-06-02T09:45:13,764 /tmp/pip-build-env-jlt5bf5b/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-06-02T09:45:13,764 !! 2025-06-02T09:45:13,765 ******************************************************************************** 2025-06-02T09:45:13,766 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-06-02T09:45:13,767 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-06-02T09:45:13,767 or your builds will no longer be supported. 2025-06-02T09:45:13,768 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-02T09:45:13,769 ******************************************************************************** 2025-06-02T09:45:13,770 !! 2025-06-02T09:45:13,770 corresp(dist, value, root_dir) 2025-06-02T09:45:13,858 /tmp/pip-build-env-jlt5bf5b/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-06-02T09:45:13,859 !! 2025-06-02T09:45:13,860 ******************************************************************************** 2025-06-02T09:45:13,860 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-06-02T09:45:13,861 License :: OSI Approved :: MIT License 2025-06-02T09:45:13,862 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-02T09:45:13,863 ******************************************************************************** 2025-06-02T09:45:13,864 !! 2025-06-02T09:45:13,865 dist._finalize_license_expression() 2025-06-02T09:45:13,865 /tmp/pip-build-env-jlt5bf5b/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-06-02T09:45:13,866 !! 2025-06-02T09:45:13,867 ******************************************************************************** 2025-06-02T09:45:13,867 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-06-02T09:45:13,869 License :: OSI Approved :: MIT License 2025-06-02T09:45:13,870 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-02T09:45:13,870 ******************************************************************************** 2025-06-02T09:45:13,871 !! 2025-06-02T09:45:13,872 self._finalize_license_expression() 2025-06-02T09:45:13,873 running bdist_wheel 2025-06-02T09:45:13,887 running build 2025-06-02T09:45:13,888 running build_py 2025-06-02T09:45:13,895 creating build/lib/bioregistry 2025-06-02T09:45:13,898 copying src/bioregistry/schema_utils.py -> build/lib/bioregistry 2025-06-02T09:45:13,900 copying src/bioregistry/collection_api.py -> build/lib/bioregistry 2025-06-02T09:45:13,902 copying src/bioregistry/compare.py -> build/lib/bioregistry 2025-06-02T09:45:13,905 copying src/bioregistry/version.py -> build/lib/bioregistry 2025-06-02T09:45:13,907 copying src/bioregistry/lint.py -> build/lib/bioregistry 2025-06-02T09:45:13,909 copying src/bioregistry/parse_version_iri.py -> build/lib/bioregistry 2025-06-02T09:45:13,911 copying src/bioregistry/utils.py -> build/lib/bioregistry 2025-06-02T09:45:13,913 copying src/bioregistry/metaresource_api.py -> build/lib/bioregistry 2025-06-02T09:45:13,915 copying src/bioregistry/license_standardizer.py -> build/lib/bioregistry 2025-06-02T09:45:13,918 copying src/bioregistry/cli.py -> build/lib/bioregistry 2025-06-02T09:45:13,920 copying src/bioregistry/summary.py -> build/lib/bioregistry 2025-06-02T09:45:13,923 copying src/bioregistry/record_accumulator.py -> build/lib/bioregistry 2025-06-02T09:45:13,926 copying src/bioregistry/parse_iri.py -> build/lib/bioregistry 2025-06-02T09:45:13,928 copying src/bioregistry/pandas.py -> build/lib/bioregistry 2025-06-02T09:45:13,931 copying src/bioregistry/upload_ndex.py -> build/lib/bioregistry 2025-06-02T09:45:13,933 copying src/bioregistry/resource_manager.py -> build/lib/bioregistry 2025-06-02T09:45:13,938 copying src/bioregistry/resolve.py -> build/lib/bioregistry 2025-06-02T09:45:13,941 copying src/bioregistry/constants.py -> build/lib/bioregistry 2025-06-02T09:45:13,944 copying src/bioregistry/__main__.py -> build/lib/bioregistry 2025-06-02T09:45:13,946 copying src/bioregistry/uri_format.py -> build/lib/bioregistry 2025-06-02T09:45:13,948 copying src/bioregistry/reference.py -> build/lib/bioregistry 2025-06-02T09:45:13,950 copying src/bioregistry/bibliometrics.py -> build/lib/bioregistry 2025-06-02T09:45:13,952 copying src/bioregistry/resolve_identifier.py -> build/lib/bioregistry 2025-06-02T09:45:13,955 copying src/bioregistry/__init__.py -> build/lib/bioregistry 2025-06-02T09:45:13,958 creating build/lib/bioregistry/data 2025-06-02T09:45:13,959 copying src/bioregistry/data/__init__.py -> build/lib/bioregistry/data 2025-06-02T09:45:13,962 creating build/lib/bioregistry/validate 2025-06-02T09:45:13,963 copying src/bioregistry/validate/utils.py -> build/lib/bioregistry/validate 2025-06-02T09:45:13,966 copying src/bioregistry/validate/cli.py -> build/lib/bioregistry/validate 2025-06-02T09:45:13,968 copying src/bioregistry/validate/__init__.py -> build/lib/bioregistry/validate 2025-06-02T09:45:13,971 creating build/lib/bioregistry/analysis 2025-06-02T09:45:13,972 copying src/bioregistry/analysis/mapping_checking.py -> build/lib/bioregistry/analysis 2025-06-02T09:45:13,975 copying src/bioregistry/analysis/bioregistry_diff.py -> build/lib/bioregistry/analysis 2025-06-02T09:45:13,978 copying src/bioregistry/analysis/__init__.py -> build/lib/bioregistry/analysis 2025-06-02T09:45:13,980 copying src/bioregistry/analysis/paper_ranking.py -> build/lib/bioregistry/analysis 2025-06-02T09:45:13,983 creating build/lib/bioregistry/app 2025-06-02T09:45:13,985 copying src/bioregistry/app/wsgi.py -> build/lib/bioregistry/app 2025-06-02T09:45:13,987 copying src/bioregistry/app/api.py -> build/lib/bioregistry/app 2025-06-02T09:45:13,990 copying src/bioregistry/app/utils.py -> build/lib/bioregistry/app 2025-06-02T09:45:13,992 copying src/bioregistry/app/cli.py -> build/lib/bioregistry/app 2025-06-02T09:45:13,995 copying src/bioregistry/app/proxies.py -> build/lib/bioregistry/app 2025-06-02T09:45:13,997 copying src/bioregistry/app/ui.py -> build/lib/bioregistry/app 2025-06-02T09:45:14,000 copying src/bioregistry/app/constants.py -> build/lib/bioregistry/app 2025-06-02T09:45:14,002 copying src/bioregistry/app/impl.py -> build/lib/bioregistry/app 2025-06-02T09:45:14,005 copying src/bioregistry/app/__init__.py -> build/lib/bioregistry/app 2025-06-02T09:45:14,007 copying src/bioregistry/app/test.py -> build/lib/bioregistry/app 2025-06-02T09:45:14,010 creating build/lib/bioregistry/external 2025-06-02T09:45:14,011 copying src/bioregistry/external/align.py -> build/lib/bioregistry/external 2025-06-02T09:45:14,014 copying src/bioregistry/external/alignment_utils.py -> build/lib/bioregistry/external 2025-06-02T09:45:14,017 copying src/bioregistry/external/__init__.py -> build/lib/bioregistry/external 2025-06-02T09:45:14,019 creating build/lib/bioregistry/schema 2025-06-02T09:45:14,021 copying src/bioregistry/schema/struct.py -> build/lib/bioregistry/schema 2025-06-02T09:45:14,026 copying src/bioregistry/schema/utils.py -> build/lib/bioregistry/schema 2025-06-02T09:45:14,028 copying src/bioregistry/schema/constants.py -> build/lib/bioregistry/schema 2025-06-02T09:45:14,031 copying src/bioregistry/schema/__init__.py -> build/lib/bioregistry/schema 2025-06-02T09:45:14,033 creating build/lib/bioregistry/benchmarks 2025-06-02T09:45:14,034 copying src/bioregistry/benchmarks/curie_validation.py -> build/lib/bioregistry/benchmarks 2025-06-02T09:45:14,037 copying src/bioregistry/benchmarks/curie_parsing.py -> build/lib/bioregistry/benchmarks 2025-06-02T09:45:14,039 copying src/bioregistry/benchmarks/cli.py -> build/lib/bioregistry/benchmarks 2025-06-02T09:45:14,041 copying src/bioregistry/benchmarks/__main__.py -> build/lib/bioregistry/benchmarks 2025-06-02T09:45:14,043 copying src/bioregistry/benchmarks/__init__.py -> build/lib/bioregistry/benchmarks 2025-06-02T09:45:14,046 copying src/bioregistry/benchmarks/uri_parsing.py -> build/lib/bioregistry/benchmarks 2025-06-02T09:45:14,048 creating build/lib/bioregistry/health 2025-06-02T09:45:14,049 copying src/bioregistry/health/check_providers.py -> build/lib/bioregistry/health 2025-06-02T09:45:14,052 copying src/bioregistry/health/cli.py -> build/lib/bioregistry/health 2025-06-02T09:45:14,054 copying src/bioregistry/health/check_homepages.py -> build/lib/bioregistry/health 2025-06-02T09:45:14,056 copying src/bioregistry/health/__main__.py -> build/lib/bioregistry/health 2025-06-02T09:45:14,058 copying src/bioregistry/health/__init__.py -> build/lib/bioregistry/health 2025-06-02T09:45:14,061 creating build/lib/bioregistry/curation 2025-06-02T09:45:14,063 copying src/bioregistry/curation/make_health_report_curation_sheet.py -> build/lib/bioregistry/curation 2025-06-02T09:45:14,065 copying src/bioregistry/curation/map_bartoc_via_wikidata.py -> build/lib/bioregistry/curation 2025-06-02T09:45:14,067 copying src/bioregistry/curation/rename_metaprefix.py -> build/lib/bioregistry/curation 2025-06-02T09:45:14,069 copying src/bioregistry/curation/cleanup_authors.py -> build/lib/bioregistry/curation 2025-06-02T09:45:14,072 copying src/bioregistry/curation/review_pc.py -> build/lib/bioregistry/curation 2025-06-02T09:45:14,074 copying src/bioregistry/curation/enrich_publications.py -> build/lib/bioregistry/curation 2025-06-02T09:45:14,077 copying src/bioregistry/curation/import_pc_semiautomatic.py -> build/lib/bioregistry/curation 2025-06-02T09:45:14,079 copying src/bioregistry/curation/suggest_author_curation.py -> build/lib/bioregistry/curation 2025-06-02T09:45:14,081 copying src/bioregistry/curation/literature.py -> build/lib/bioregistry/curation 2025-06-02T09:45:14,083 copying src/bioregistry/curation/bulk_import.py -> build/lib/bioregistry/curation 2025-06-02T09:45:14,085 copying src/bioregistry/curation/deprecation_diff.py -> build/lib/bioregistry/curation 2025-06-02T09:45:14,087 copying src/bioregistry/curation/fix_obo_purls.py -> build/lib/bioregistry/curation 2025-06-02T09:45:14,090 copying src/bioregistry/curation/find_contact_groups.py -> build/lib/bioregistry/curation 2025-06-02T09:45:14,092 copying src/bioregistry/curation/add_descriptions_from_gs.py -> build/lib/bioregistry/curation 2025-06-02T09:45:14,094 copying src/bioregistry/curation/add_examples.py -> build/lib/bioregistry/curation 2025-06-02T09:45:14,096 copying src/bioregistry/curation/clean_publications.py -> build/lib/bioregistry/curation 2025-06-02T09:45:14,098 copying src/bioregistry/curation/add_ontology_regexes.py -> build/lib/bioregistry/curation 2025-06-02T09:45:14,100 copying src/bioregistry/curation/__init__.py -> build/lib/bioregistry/curation 2025-06-02T09:45:14,102 copying src/bioregistry/curation/clean_licenses.py -> build/lib/bioregistry/curation 2025-06-02T09:45:14,104 copying src/bioregistry/curation/map_re3data_via_fairsharing.py -> build/lib/bioregistry/curation 2025-06-02T09:45:14,106 copying src/bioregistry/curation/add_examples_from_ols.py -> build/lib/bioregistry/curation 2025-06-02T09:45:14,109 copying src/bioregistry/curation/add_co_providers.py -> build/lib/bioregistry/curation 2025-06-02T09:45:14,111 copying src/bioregistry/curation/suggest_uniprot_providers.py -> build/lib/bioregistry/curation 2025-06-02T09:45:14,113 copying src/bioregistry/curation/make_description_curation_sheet.py -> build/lib/bioregistry/curation 2025-06-02T09:45:14,115 copying src/bioregistry/curation/clean_name_suffixes.py -> build/lib/bioregistry/curation 2025-06-02T09:45:14,117 creating build/lib/bioregistry/gh 2025-06-02T09:45:14,119 copying src/bioregistry/gh/github_client.py -> build/lib/bioregistry/gh 2025-06-02T09:45:14,122 copying src/bioregistry/gh/new_prefix.py -> build/lib/bioregistry/gh 2025-06-02T09:45:14,124 copying src/bioregistry/gh/__init__.py -> build/lib/bioregistry/gh 2025-06-02T09:45:14,127 creating build/lib/bioregistry/export 2025-06-02T09:45:14,128 copying src/bioregistry/export/yaml_export.py -> build/lib/bioregistry/export 2025-06-02T09:45:14,130 copying src/bioregistry/export/tsv_export.py -> build/lib/bioregistry/export 2025-06-02T09:45:14,132 copying src/bioregistry/export/tables_export.py -> build/lib/bioregistry/export 2025-06-02T09:45:14,135 copying src/bioregistry/export/sssom_export.py -> build/lib/bioregistry/export 2025-06-02T09:45:14,137 copying src/bioregistry/export/schema_export.py -> build/lib/bioregistry/export 2025-06-02T09:45:14,139 copying src/bioregistry/export/cli.py -> build/lib/bioregistry/export 2025-06-02T09:45:14,141 copying src/bioregistry/export/prefixcc.py -> build/lib/bioregistry/export 2025-06-02T09:45:14,143 copying src/bioregistry/export/rdf_export.py -> build/lib/bioregistry/export 2025-06-02T09:45:14,146 copying src/bioregistry/export/__main__.py -> build/lib/bioregistry/export 2025-06-02T09:45:14,148 copying src/bioregistry/export/warnings_export.py -> build/lib/bioregistry/export 2025-06-02T09:45:14,150 copying src/bioregistry/export/__init__.py -> build/lib/bioregistry/export 2025-06-02T09:45:14,152 copying src/bioregistry/export/prefix_maps.py -> build/lib/bioregistry/export 2025-06-02T09:45:14,157 creating build/lib/bioregistry/external/miriam 2025-06-02T09:45:14,158 copying src/bioregistry/external/miriam/__init__.py -> build/lib/bioregistry/external/miriam 2025-06-02T09:45:14,161 creating build/lib/bioregistry/external/cropoct 2025-06-02T09:45:14,162 copying src/bioregistry/external/cropoct/__init__.py -> build/lib/bioregistry/external/cropoct 2025-06-02T09:45:14,165 creating build/lib/bioregistry/external/go 2025-06-02T09:45:14,166 copying src/bioregistry/external/go/__init__.py -> build/lib/bioregistry/external/go 2025-06-02T09:45:14,169 creating build/lib/bioregistry/external/integbio 2025-06-02T09:45:14,170 copying src/bioregistry/external/integbio/__init__.py -> build/lib/bioregistry/external/integbio 2025-06-02T09:45:14,173 creating build/lib/bioregistry/external/biocontext 2025-06-02T09:45:14,174 copying src/bioregistry/external/biocontext/__init__.py -> build/lib/bioregistry/external/biocontext 2025-06-02T09:45:14,177 creating build/lib/bioregistry/external/lov 2025-06-02T09:45:14,178 copying src/bioregistry/external/lov/__init__.py -> build/lib/bioregistry/external/lov 2025-06-02T09:45:14,181 creating build/lib/bioregistry/external/edam 2025-06-02T09:45:14,182 copying src/bioregistry/external/edam/__init__.py -> build/lib/bioregistry/external/edam 2025-06-02T09:45:14,185 creating build/lib/bioregistry/external/ontobee 2025-06-02T09:45:14,186 copying src/bioregistry/external/ontobee/__init__.py -> build/lib/bioregistry/external/ontobee 2025-06-02T09:45:14,189 creating build/lib/bioregistry/external/fairsharing 2025-06-02T09:45:14,191 copying src/bioregistry/external/fairsharing/__init__.py -> build/lib/bioregistry/external/fairsharing 2025-06-02T09:45:14,194 creating build/lib/bioregistry/external/hl7 2025-06-02T09:45:14,195 copying src/bioregistry/external/hl7/__init__.py -> build/lib/bioregistry/external/hl7 2025-06-02T09:45:14,198 creating build/lib/bioregistry/external/bartoc 2025-06-02T09:45:14,199 copying src/bioregistry/external/bartoc/__init__.py -> build/lib/bioregistry/external/bartoc 2025-06-02T09:45:14,202 creating build/lib/bioregistry/external/wikidata 2025-06-02T09:45:14,203 copying src/bioregistry/external/wikidata/__init__.py -> build/lib/bioregistry/external/wikidata 2025-06-02T09:45:14,206 creating build/lib/bioregistry/external/cellosaurus 2025-06-02T09:45:14,207 copying src/bioregistry/external/cellosaurus/__init__.py -> build/lib/bioregistry/external/cellosaurus 2025-06-02T09:45:14,209 creating build/lib/bioregistry/external/n2t 2025-06-02T09:45:14,210 copying src/bioregistry/external/n2t/__init__.py -> build/lib/bioregistry/external/n2t 2025-06-02T09:45:14,213 creating build/lib/bioregistry/external/obofoundry 2025-06-02T09:45:14,214 copying src/bioregistry/external/obofoundry/__init__.py -> build/lib/bioregistry/external/obofoundry 2025-06-02T09:45:14,217 creating build/lib/bioregistry/external/prefixcommons 2025-06-02T09:45:14,218 copying src/bioregistry/external/prefixcommons/__init__.py -> build/lib/bioregistry/external/prefixcommons 2025-06-02T09:45:14,221 creating build/lib/bioregistry/external/rrid 2025-06-02T09:45:14,223 copying src/bioregistry/external/rrid/__init__.py -> build/lib/bioregistry/external/rrid 2025-06-02T09:45:14,225 creating build/lib/bioregistry/external/uniprot 2025-06-02T09:45:14,226 copying src/bioregistry/external/uniprot/__init__.py -> build/lib/bioregistry/external/uniprot 2025-06-02T09:45:14,229 creating build/lib/bioregistry/external/biolink 2025-06-02T09:45:14,230 copying src/bioregistry/external/biolink/__init__.py -> build/lib/bioregistry/external/biolink 2025-06-02T09:45:14,233 creating build/lib/bioregistry/external/cheminf 2025-06-02T09:45:14,234 copying src/bioregistry/external/cheminf/__init__.py -> build/lib/bioregistry/external/cheminf 2025-06-02T09:45:14,237 creating build/lib/bioregistry/external/zazuko 2025-06-02T09:45:14,238 copying src/bioregistry/external/zazuko/__init__.py -> build/lib/bioregistry/external/zazuko 2025-06-02T09:45:14,241 creating build/lib/bioregistry/external/togoid 2025-06-02T09:45:14,242 copying src/bioregistry/external/togoid/__init__.py -> build/lib/bioregistry/external/togoid 2025-06-02T09:45:14,245 creating build/lib/bioregistry/external/re3data 2025-06-02T09:45:14,246 copying src/bioregistry/external/re3data/__init__.py -> build/lib/bioregistry/external/re3data 2025-06-02T09:45:14,249 creating build/lib/bioregistry/external/ncbi 2025-06-02T09:45:14,250 copying src/bioregistry/external/ncbi/__init__.py -> build/lib/bioregistry/external/ncbi 2025-06-02T09:45:14,253 creating build/lib/bioregistry/external/pathguide 2025-06-02T09:45:14,254 copying src/bioregistry/external/pathguide/__init__.py -> build/lib/bioregistry/external/pathguide 2025-06-02T09:45:14,257 creating build/lib/bioregistry/external/bioportal 2025-06-02T09:45:14,258 copying src/bioregistry/external/bioportal/ecoportal.py -> build/lib/bioregistry/external/bioportal 2025-06-02T09:45:14,261 copying src/bioregistry/external/bioportal/agroportal.py -> build/lib/bioregistry/external/bioportal 2025-06-02T09:45:14,263 copying src/bioregistry/external/bioportal/bioportal.py -> build/lib/bioregistry/external/bioportal 2025-06-02T09:45:14,265 copying src/bioregistry/external/bioportal/__init__.py -> build/lib/bioregistry/external/bioportal 2025-06-02T09:45:14,268 creating build/lib/bioregistry/external/aberowl 2025-06-02T09:45:14,269 copying src/bioregistry/external/aberowl/__init__.py -> build/lib/bioregistry/external/aberowl 2025-06-02T09:45:14,272 creating build/lib/bioregistry/external/ols 2025-06-02T09:45:14,273 copying src/bioregistry/external/ols/__init__.py -> build/lib/bioregistry/external/ols 2025-06-02T09:45:14,277 running egg_info 2025-06-02T09:45:14,290 writing src/bioregistry.egg-info/PKG-INFO 2025-06-02T09:45:14,315 writing dependency_links to src/bioregistry.egg-info/dependency_links.txt 2025-06-02T09:45:14,318 writing entry points to src/bioregistry.egg-info/entry_points.txt 2025-06-02T09:45:14,330 writing requirements to src/bioregistry.egg-info/requires.txt 2025-06-02T09:45:14,331 writing top-level names to src/bioregistry.egg-info/top_level.txt 2025-06-02T09:45:14,415 reading manifest file 'src/bioregistry.egg-info/SOURCES.txt' 2025-06-02T09:45:14,432 reading manifest template 'MANIFEST.in' 2025-06-02T09:45:14,481 warning: no files found matching 'Makefile' under directory 'docs' 2025-06-02T09:45:14,502 warning: no previously-included files matching '*.png' found under directory 'docs/img' 2025-06-02T09:45:14,505 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2025-06-02T09:45:14,508 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2025-06-02T09:45:14,511 warning: no previously-included files matching '*.so' found anywhere in distribution 2025-06-02T09:45:14,513 warning: no previously-included files matching '*.dylib' found anywhere in distribution 2025-06-02T09:45:14,516 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2025-06-02T09:45:14,518 warning: no previously-included files matching '*.gpickle' found anywhere in distribution 2025-06-02T09:45:14,520 no previously-included directories found matching 'docs/build' 2025-06-02T09:45:14,521 no previously-included directories found matching 'docs/_data' 2025-06-02T09:45:14,523 no previously-included directories found matching 'docs/source/api' 2025-06-02T09:45:14,524 no previously-included directories found matching 'exports' 2025-06-02T09:45:14,526 no previously-included directories found matching 'notebooks' 2025-06-02T09:45:14,527 no previously-included directories found matching 'tests/.pytest_cache' 2025-06-02T09:45:14,529 no previously-included directories found matching 'docs/.well-known' 2025-06-02T09:45:14,530 warning: no previously-included files found matching 'docs/*.md' 2025-06-02T09:45:14,532 warning: no previously-included files found matching 'docs/guides/*.md' 2025-06-02T09:45:14,533 warning: no previously-included files found matching 'docs/_config.yml' 2025-06-02T09:45:14,535 warning: no previously-included files found matching '.appveyor.yml' 2025-06-02T09:45:14,536 warning: no previously-included files found matching '.bumpversion.cfg' 2025-06-02T09:45:14,537 warning: no previously-included files found matching '.coveragerc' 2025-06-02T09:45:14,538 warning: no previously-included files found matching '.flake8' 2025-06-02T09:45:14,539 warning: no previously-included files found matching '.travis.yml' 2025-06-02T09:45:14,541 warning: no previously-included files found matching '.readthedocs.yml' 2025-06-02T09:45:14,542 warning: no previously-included files found matching 'tox.ini' 2025-06-02T09:45:14,543 warning: no previously-included files found matching '.pre-commit-config.yaml' 2025-06-02T09:45:14,545 warning: no previously-included files found matching 'Dockerfile' 2025-06-02T09:45:14,546 warning: no previously-included files found matching 'CITATION.cff' 2025-06-02T09:45:14,547 warning: no files found matching '*.rst' 2025-06-02T09:45:14,548 adding license file 'LICENSE' 2025-06-02T09:45:14,566 writing manifest file 'src/bioregistry.egg-info/SOURCES.txt' 2025-06-02T09:45:14,619 copying src/bioregistry/py.typed -> build/lib/bioregistry 2025-06-02T09:45:14,632 copying src/bioregistry/data/README.md -> build/lib/bioregistry/data 2025-06-02T09:45:14,635 copying src/bioregistry/data/bioregistry.json -> build/lib/bioregistry/data 2025-06-02T09:45:14,787 copying src/bioregistry/data/collections.json -> build/lib/bioregistry/data 2025-06-02T09:45:14,790 copying src/bioregistry/data/contexts.json -> build/lib/bioregistry/data 2025-06-02T09:45:14,792 copying src/bioregistry/data/curated_mappings.sssom.tsv -> build/lib/bioregistry/data 2025-06-02T09:45:14,795 copying src/bioregistry/data/curated_papers.tsv -> build/lib/bioregistry/data 2025-06-02T09:45:14,798 copying src/bioregistry/data/metaregistry.json -> build/lib/bioregistry/data 2025-06-02T09:45:14,813 copying src/bioregistry/schema/schema.json -> build/lib/bioregistry/schema 2025-06-02T09:45:14,843 creating build/lib/bioregistry/app/templates 2025-06-02T09:45:14,844 copying src/bioregistry/app/templates/base.html -> build/lib/bioregistry/app/templates 2025-06-02T09:45:14,847 copying src/bioregistry/app/templates/collection.html -> build/lib/bioregistry/app/templates 2025-06-02T09:45:14,849 copying src/bioregistry/app/templates/collections.html -> build/lib/bioregistry/app/templates 2025-06-02T09:45:14,852 copying src/bioregistry/app/templates/context.html -> build/lib/bioregistry/app/templates 2025-06-02T09:45:14,855 copying src/bioregistry/app/templates/contexts.html -> build/lib/bioregistry/app/templates 2025-06-02T09:45:14,857 copying src/bioregistry/app/templates/contributor.html -> build/lib/bioregistry/app/templates 2025-06-02T09:45:14,860 copying src/bioregistry/app/templates/contributors.html -> build/lib/bioregistry/app/templates 2025-06-02T09:45:14,862 copying src/bioregistry/app/templates/home.html -> build/lib/bioregistry/app/templates 2025-06-02T09:45:14,865 copying src/bioregistry/app/templates/macros.html -> build/lib/bioregistry/app/templates 2025-06-02T09:45:14,868 copying src/bioregistry/app/templates/metaresource.html -> build/lib/bioregistry/app/templates 2025-06-02T09:45:14,871 copying src/bioregistry/app/templates/metaresources.html -> build/lib/bioregistry/app/templates 2025-06-02T09:45:14,873 copying src/bioregistry/app/templates/prose.html -> build/lib/bioregistry/app/templates 2025-06-02T09:45:14,876 copying src/bioregistry/app/templates/reference.html -> build/lib/bioregistry/app/templates 2025-06-02T09:45:14,878 copying src/bioregistry/app/templates/resource.html -> build/lib/bioregistry/app/templates 2025-06-02T09:45:14,882 copying src/bioregistry/app/templates/resources.html -> build/lib/bioregistry/app/templates 2025-06-02T09:45:14,885 creating build/lib/bioregistry/app/static 2025-06-02T09:45:14,886 copying src/bioregistry/app/static/funding-manifest-urls.txt -> build/lib/bioregistry/app/static 2025-06-02T09:45:14,888 copying src/bioregistry/app/static/logo.svg -> build/lib/bioregistry/app/static 2025-06-02T09:45:14,905 creating build/lib/bioregistry/app/templates/resolve_errors 2025-06-02T09:45:14,906 copying src/bioregistry/app/templates/resolve_errors/disallowed_identifier.html -> build/lib/bioregistry/app/templates/resolve_errors 2025-06-02T09:45:14,908 copying src/bioregistry/app/templates/resolve_errors/invalid_identifier.html -> build/lib/bioregistry/app/templates/resolve_errors 2025-06-02T09:45:14,911 copying src/bioregistry/app/templates/resolve_errors/missing_prefix.html -> build/lib/bioregistry/app/templates/resolve_errors 2025-06-02T09:45:14,914 copying src/bioregistry/app/templates/resolve_errors/missing_providers.html -> build/lib/bioregistry/app/templates/resolve_errors 2025-06-02T09:45:14,916 creating build/lib/bioregistry/app/templates/highlights 2025-06-02T09:45:14,917 copying src/bioregistry/app/templates/highlights/keywords.html -> build/lib/bioregistry/app/templates/highlights 2025-06-02T09:45:14,920 copying src/bioregistry/app/templates/highlights/owners.html -> build/lib/bioregistry/app/templates/highlights 2025-06-02T09:45:14,922 copying src/bioregistry/app/templates/highlights/relations.html -> build/lib/bioregistry/app/templates/highlights 2025-06-02T09:45:14,925 copying src/bioregistry/app/templates/highlights/twitter.html -> build/lib/bioregistry/app/templates/highlights 2025-06-02T09:45:14,927 creating build/lib/bioregistry/app/templates/meta 2025-06-02T09:45:14,928 copying src/bioregistry/app/templates/meta/access.html -> build/lib/bioregistry/app/templates/meta 2025-06-02T09:45:14,931 copying src/bioregistry/app/templates/meta/acknowledgements.html -> build/lib/bioregistry/app/templates/meta 2025-06-02T09:45:14,935 copying src/bioregistry/app/templates/meta/download.html -> build/lib/bioregistry/app/templates/meta 2025-06-02T09:45:14,938 copying src/bioregistry/app/templates/meta/related.html -> build/lib/bioregistry/app/templates/meta 2025-06-02T09:45:14,941 copying src/bioregistry/app/templates/meta/schema.html -> build/lib/bioregistry/app/templates/meta 2025-06-02T09:45:14,943 copying src/bioregistry/app/templates/meta/summary.html -> build/lib/bioregistry/app/templates/meta 2025-06-02T09:45:14,947 copying src/bioregistry/app/templates/meta/sustainability.html -> build/lib/bioregistry/app/templates/meta 2025-06-02T09:45:14,949 copying src/bioregistry/external/miriam/processed.json -> build/lib/bioregistry/external/miriam 2025-06-02T09:45:14,968 copying src/bioregistry/external/cropoct/processed.json -> build/lib/bioregistry/external/cropoct 2025-06-02T09:45:14,971 copying src/bioregistry/external/go/processed.json -> build/lib/bioregistry/external/go 2025-06-02T09:45:14,978 copying src/bioregistry/external/go/processing_go.json -> build/lib/bioregistry/external/go 2025-06-02T09:45:14,980 copying src/bioregistry/external/integbio/processed.json -> build/lib/bioregistry/external/integbio 2025-06-02T09:45:15,018 copying src/bioregistry/external/biocontext/processed.json -> build/lib/bioregistry/external/biocontext 2025-06-02T09:45:15,023 copying src/bioregistry/external/lov/processed.json -> build/lib/bioregistry/external/lov 2025-06-02T09:45:15,034 copying src/bioregistry/external/edam/processed.json -> build/lib/bioregistry/external/edam 2025-06-02T09:45:15,038 copying src/bioregistry/external/ontobee/processed.json -> build/lib/bioregistry/external/ontobee 2025-06-02T09:45:15,042 copying src/bioregistry/external/fairsharing/processed.json -> build/lib/bioregistry/external/fairsharing 2025-06-02T09:45:15,068 copying src/bioregistry/external/hl7/OID_Report.csv -> build/lib/bioregistry/external/hl7 2025-06-02T09:45:15,076 copying src/bioregistry/external/bartoc/processed.json -> build/lib/bioregistry/external/bartoc 2025-06-02T09:45:15,177 copying src/bioregistry/external/wikidata/processed.json -> build/lib/bioregistry/external/wikidata 2025-06-02T09:45:15,190 copying src/bioregistry/external/cellosaurus/processed.json -> build/lib/bioregistry/external/cellosaurus 2025-06-02T09:45:15,195 copying src/bioregistry/external/n2t/processed.json -> build/lib/bioregistry/external/n2t 2025-06-02T09:45:15,207 copying src/bioregistry/external/obofoundry/processed.json -> build/lib/bioregistry/external/obofoundry 2025-06-02T09:45:15,215 copying src/bioregistry/external/prefixcommons/processed.json -> build/lib/bioregistry/external/prefixcommons 2025-06-02T09:45:15,230 copying src/bioregistry/external/uniprot/processed.json -> build/lib/bioregistry/external/uniprot 2025-06-02T09:45:15,235 copying src/bioregistry/external/biolink/processed.json -> build/lib/bioregistry/external/biolink 2025-06-02T09:45:15,238 copying src/bioregistry/external/biolink/processing_biolink.json -> build/lib/bioregistry/external/biolink 2025-06-02T09:45:15,241 copying src/bioregistry/external/cheminf/processed.json -> build/lib/bioregistry/external/cheminf 2025-06-02T09:45:15,244 copying src/bioregistry/external/zazuko/processed.json -> build/lib/bioregistry/external/zazuko 2025-06-02T09:45:15,247 copying src/bioregistry/external/togoid/processed.json -> build/lib/bioregistry/external/togoid 2025-06-02T09:45:15,252 copying src/bioregistry/external/re3data/processed.json -> build/lib/bioregistry/external/re3data 2025-06-02T09:45:15,303 copying src/bioregistry/external/ncbi/processed.json -> build/lib/bioregistry/external/ncbi 2025-06-02T09:45:15,307 copying src/bioregistry/external/bioportal/agroportal.json -> build/lib/bioregistry/external/bioportal 2025-06-02T09:45:15,314 copying src/bioregistry/external/bioportal/bioportal.json -> build/lib/bioregistry/external/bioportal 2025-06-02T09:45:15,331 copying src/bioregistry/external/bioportal/ecoportal.json -> build/lib/bioregistry/external/bioportal 2025-06-02T09:45:15,337 copying src/bioregistry/external/aberowl/processed.json -> build/lib/bioregistry/external/aberowl 2025-06-02T09:45:15,368 copying src/bioregistry/external/ols/processed.json -> build/lib/bioregistry/external/ols 2025-06-02T09:45:15,374 copying src/bioregistry/external/ols/processing_ols.json -> build/lib/bioregistry/external/ols 2025-06-02T09:45:15,412 installing to build/bdist.linux-armv7l/wheel 2025-06-02T09:45:15,413 running install 2025-06-02T09:45:15,440 running install_lib 2025-06-02T09:45:15,446 creating build/bdist.linux-armv7l/wheel 2025-06-02T09:45:15,448 creating build/bdist.linux-armv7l/wheel/bioregistry 2025-06-02T09:45:15,449 copying build/lib/bioregistry/schema_utils.py -> build/bdist.linux-armv7l/wheel/./bioregistry 2025-06-02T09:45:15,452 creating build/bdist.linux-armv7l/wheel/bioregistry/data 2025-06-02T09:45:15,453 copying build/lib/bioregistry/data/contexts.json -> build/bdist.linux-armv7l/wheel/./bioregistry/data 2025-06-02T09:45:15,455 copying build/lib/bioregistry/data/bioregistry.json -> build/bdist.linux-armv7l/wheel/./bioregistry/data 2025-06-02T09:45:15,740 copying build/lib/bioregistry/data/metaregistry.json -> build/bdist.linux-armv7l/wheel/./bioregistry/data 2025-06-02T09:45:15,744 copying build/lib/bioregistry/data/README.md -> build/bdist.linux-armv7l/wheel/./bioregistry/data 2025-06-02T09:45:15,746 copying build/lib/bioregistry/data/collections.json -> build/bdist.linux-armv7l/wheel/./bioregistry/data 2025-06-02T09:45:15,749 copying build/lib/bioregistry/data/curated_papers.tsv -> build/bdist.linux-armv7l/wheel/./bioregistry/data 2025-06-02T09:45:15,751 copying build/lib/bioregistry/data/__init__.py -> build/bdist.linux-armv7l/wheel/./bioregistry/data 2025-06-02T09:45:15,753 copying build/lib/bioregistry/data/curated_mappings.sssom.tsv -> build/bdist.linux-armv7l/wheel/./bioregistry/data 2025-06-02T09:45:15,757 creating build/bdist.linux-armv7l/wheel/bioregistry/validate 2025-06-02T09:45:15,758 copying build/lib/bioregistry/validate/utils.py -> build/bdist.linux-armv7l/wheel/./bioregistry/validate 2025-06-02T09:45:15,760 copying build/lib/bioregistry/validate/cli.py -> build/bdist.linux-armv7l/wheel/./bioregistry/validate 2025-06-02T09:45:15,762 copying build/lib/bioregistry/validate/__init__.py -> build/bdist.linux-armv7l/wheel/./bioregistry/validate 2025-06-02T09:45:15,763 copying build/lib/bioregistry/collection_api.py -> build/bdist.linux-armv7l/wheel/./bioregistry 2025-06-02T09:45:15,765 copying build/lib/bioregistry/compare.py -> build/bdist.linux-armv7l/wheel/./bioregistry 2025-06-02T09:45:15,769 creating build/bdist.linux-armv7l/wheel/bioregistry/analysis 2025-06-02T09:45:15,770 copying build/lib/bioregistry/analysis/mapping_checking.py -> build/bdist.linux-armv7l/wheel/./bioregistry/analysis 2025-06-02T09:45:15,772 copying build/lib/bioregistry/analysis/bioregistry_diff.py -> build/bdist.linux-armv7l/wheel/./bioregistry/analysis 2025-06-02T09:45:15,775 copying build/lib/bioregistry/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/./bioregistry/analysis 2025-06-02T09:45:15,777 copying build/lib/bioregistry/analysis/paper_ranking.py -> build/bdist.linux-armv7l/wheel/./bioregistry/analysis 2025-06-02T09:45:15,780 creating build/bdist.linux-armv7l/wheel/bioregistry/app 2025-06-02T09:45:15,781 copying build/lib/bioregistry/app/wsgi.py -> build/bdist.linux-armv7l/wheel/./bioregistry/app 2025-06-02T09:45:15,784 copying build/lib/bioregistry/app/api.py -> build/bdist.linux-armv7l/wheel/./bioregistry/app 2025-06-02T09:45:15,786 copying build/lib/bioregistry/app/utils.py -> build/bdist.linux-armv7l/wheel/./bioregistry/app 2025-06-02T09:45:15,789 copying build/lib/bioregistry/app/cli.py -> build/bdist.linux-armv7l/wheel/./bioregistry/app 2025-06-02T09:45:15,791 copying build/lib/bioregistry/app/proxies.py -> build/bdist.linux-armv7l/wheel/./bioregistry/app 2025-06-02T09:45:15,794 copying build/lib/bioregistry/app/ui.py -> build/bdist.linux-armv7l/wheel/./bioregistry/app 2025-06-02T09:45:15,797 copying build/lib/bioregistry/app/constants.py -> build/bdist.linux-armv7l/wheel/./bioregistry/app 2025-06-02T09:45:15,800 creating build/bdist.linux-armv7l/wheel/bioregistry/app/templates 2025-06-02T09:45:15,801 copying build/lib/bioregistry/app/templates/macros.html -> build/bdist.linux-armv7l/wheel/./bioregistry/app/templates 2025-06-02T09:45:15,804 copying build/lib/bioregistry/app/templates/resources.html -> build/bdist.linux-armv7l/wheel/./bioregistry/app/templates 2025-06-02T09:45:15,806 copying build/lib/bioregistry/app/templates/contributor.html -> build/bdist.linux-armv7l/wheel/./bioregistry/app/templates 2025-06-02T09:45:15,808 copying build/lib/bioregistry/app/templates/metaresources.html -> build/bdist.linux-armv7l/wheel/./bioregistry/app/templates 2025-06-02T09:45:15,811 creating build/bdist.linux-armv7l/wheel/bioregistry/app/templates/resolve_errors 2025-06-02T09:45:15,812 copying build/lib/bioregistry/app/templates/resolve_errors/missing_prefix.html -> build/bdist.linux-armv7l/wheel/./bioregistry/app/templates/resolve_errors 2025-06-02T09:45:15,814 copying build/lib/bioregistry/app/templates/resolve_errors/invalid_identifier.html -> build/bdist.linux-armv7l/wheel/./bioregistry/app/templates/resolve_errors 2025-06-02T09:45:15,816 copying build/lib/bioregistry/app/templates/resolve_errors/missing_providers.html -> build/bdist.linux-armv7l/wheel/./bioregistry/app/templates/resolve_errors 2025-06-02T09:45:15,818 copying build/lib/bioregistry/app/templates/resolve_errors/disallowed_identifier.html -> build/bdist.linux-armv7l/wheel/./bioregistry/app/templates/resolve_errors 2025-06-02T09:45:15,821 creating build/bdist.linux-armv7l/wheel/bioregistry/app/templates/highlights 2025-06-02T09:45:15,822 copying build/lib/bioregistry/app/templates/highlights/relations.html -> build/bdist.linux-armv7l/wheel/./bioregistry/app/templates/highlights 2025-06-02T09:45:15,824 copying build/lib/bioregistry/app/templates/highlights/twitter.html -> build/bdist.linux-armv7l/wheel/./bioregistry/app/templates/highlights 2025-06-02T09:45:15,826 copying build/lib/bioregistry/app/templates/highlights/keywords.html -> build/bdist.linux-armv7l/wheel/./bioregistry/app/templates/highlights 2025-06-02T09:45:15,828 copying build/lib/bioregistry/app/templates/highlights/owners.html -> build/bdist.linux-armv7l/wheel/./bioregistry/app/templates/highlights 2025-06-02T09:45:15,830 copying build/lib/bioregistry/app/templates/home.html -> build/bdist.linux-armv7l/wheel/./bioregistry/app/templates 2025-06-02T09:45:15,833 copying build/lib/bioregistry/app/templates/contexts.html -> build/bdist.linux-armv7l/wheel/./bioregistry/app/templates 2025-06-02T09:45:15,836 creating build/bdist.linux-armv7l/wheel/bioregistry/app/templates/meta 2025-06-02T09:45:15,837 copying build/lib/bioregistry/app/templates/meta/acknowledgements.html -> build/bdist.linux-armv7l/wheel/./bioregistry/app/templates/meta 2025-06-02T09:45:15,840 copying build/lib/bioregistry/app/templates/meta/summary.html -> build/bdist.linux-armv7l/wheel/./bioregistry/app/templates/meta 2025-06-02T09:45:15,843 copying build/lib/bioregistry/app/templates/meta/schema.html -> build/bdist.linux-armv7l/wheel/./bioregistry/app/templates/meta 2025-06-02T09:45:15,845 copying build/lib/bioregistry/app/templates/meta/related.html -> build/bdist.linux-armv7l/wheel/./bioregistry/app/templates/meta 2025-06-02T09:45:15,848 copying build/lib/bioregistry/app/templates/meta/download.html -> build/bdist.linux-armv7l/wheel/./bioregistry/app/templates/meta 2025-06-02T09:45:15,851 copying build/lib/bioregistry/app/templates/meta/sustainability.html -> build/bdist.linux-armv7l/wheel/./bioregistry/app/templates/meta 2025-06-02T09:45:15,854 copying build/lib/bioregistry/app/templates/meta/access.html -> build/bdist.linux-armv7l/wheel/./bioregistry/app/templates/meta 2025-06-02T09:45:15,856 copying build/lib/bioregistry/app/templates/collections.html -> build/bdist.linux-armv7l/wheel/./bioregistry/app/templates 2025-06-02T09:45:15,858 copying build/lib/bioregistry/app/templates/metaresource.html -> build/bdist.linux-armv7l/wheel/./bioregistry/app/templates 2025-06-02T09:45:15,861 copying build/lib/bioregistry/app/templates/prose.html -> build/bdist.linux-armv7l/wheel/./bioregistry/app/templates 2025-06-02T09:45:15,863 copying build/lib/bioregistry/app/templates/reference.html -> build/bdist.linux-armv7l/wheel/./bioregistry/app/templates 2025-06-02T09:45:15,865 copying build/lib/bioregistry/app/templates/base.html -> build/bdist.linux-armv7l/wheel/./bioregistry/app/templates 2025-06-02T09:45:15,867 copying build/lib/bioregistry/app/templates/contributors.html -> build/bdist.linux-armv7l/wheel/./bioregistry/app/templates 2025-06-02T09:45:15,869 copying build/lib/bioregistry/app/templates/context.html -> build/bdist.linux-armv7l/wheel/./bioregistry/app/templates 2025-06-02T09:45:15,872 copying build/lib/bioregistry/app/templates/resource.html -> build/bdist.linux-armv7l/wheel/./bioregistry/app/templates 2025-06-02T09:45:15,875 copying build/lib/bioregistry/app/templates/collection.html -> build/bdist.linux-armv7l/wheel/./bioregistry/app/templates 2025-06-02T09:45:15,877 copying build/lib/bioregistry/app/impl.py -> build/bdist.linux-armv7l/wheel/./bioregistry/app 2025-06-02T09:45:15,881 creating build/bdist.linux-armv7l/wheel/bioregistry/app/static 2025-06-02T09:45:15,882 copying build/lib/bioregistry/app/static/funding-manifest-urls.txt -> build/bdist.linux-armv7l/wheel/./bioregistry/app/static 2025-06-02T09:45:15,884 copying build/lib/bioregistry/app/static/logo.svg -> build/bdist.linux-armv7l/wheel/./bioregistry/app/static 2025-06-02T09:45:15,900 copying build/lib/bioregistry/app/__init__.py -> build/bdist.linux-armv7l/wheel/./bioregistry/app 2025-06-02T09:45:15,903 copying build/lib/bioregistry/app/test.py -> build/bdist.linux-armv7l/wheel/./bioregistry/app 2025-06-02T09:45:15,905 copying build/lib/bioregistry/version.py -> build/bdist.linux-armv7l/wheel/./bioregistry 2025-06-02T09:45:15,908 creating build/bdist.linux-armv7l/wheel/bioregistry/external 2025-06-02T09:45:15,910 creating build/bdist.linux-armv7l/wheel/bioregistry/external/miriam 2025-06-02T09:45:15,911 copying build/lib/bioregistry/external/miriam/__init__.py -> build/bdist.linux-armv7l/wheel/./bioregistry/external/miriam 2025-06-02T09:45:15,913 copying build/lib/bioregistry/external/miriam/processed.json -> build/bdist.linux-armv7l/wheel/./bioregistry/external/miriam 2025-06-02T09:45:15,927 creating build/bdist.linux-armv7l/wheel/bioregistry/external/cropoct 2025-06-02T09:45:15,928 copying build/lib/bioregistry/external/cropoct/__init__.py -> build/bdist.linux-armv7l/wheel/./bioregistry/external/cropoct 2025-06-02T09:45:15,930 copying build/lib/bioregistry/external/cropoct/processed.json -> build/bdist.linux-armv7l/wheel/./bioregistry/external/cropoct 2025-06-02T09:45:15,933 creating build/bdist.linux-armv7l/wheel/bioregistry/external/go 2025-06-02T09:45:15,935 copying build/lib/bioregistry/external/go/processing_go.json -> build/bdist.linux-armv7l/wheel/./bioregistry/external/go 2025-06-02T09:45:15,937 copying build/lib/bioregistry/external/go/__init__.py -> build/bdist.linux-armv7l/wheel/./bioregistry/external/go 2025-06-02T09:45:15,939 copying build/lib/bioregistry/external/go/processed.json -> build/bdist.linux-armv7l/wheel/./bioregistry/external/go 2025-06-02T09:45:15,945 creating build/bdist.linux-armv7l/wheel/bioregistry/external/integbio 2025-06-02T09:45:15,946 copying build/lib/bioregistry/external/integbio/__init__.py -> build/bdist.linux-armv7l/wheel/./bioregistry/external/integbio 2025-06-02T09:45:15,949 copying build/lib/bioregistry/external/integbio/processed.json -> build/bdist.linux-armv7l/wheel/./bioregistry/external/integbio 2025-06-02T09:45:15,993 creating build/bdist.linux-armv7l/wheel/bioregistry/external/biocontext 2025-06-02T09:45:15,994 copying build/lib/bioregistry/external/biocontext/__init__.py -> build/bdist.linux-armv7l/wheel/./bioregistry/external/biocontext 2025-06-02T09:45:15,997 copying build/lib/bioregistry/external/biocontext/processed.json -> build/bdist.linux-armv7l/wheel/./bioregistry/external/biocontext 2025-06-02T09:45:16,001 creating build/bdist.linux-armv7l/wheel/bioregistry/external/lov 2025-06-02T09:45:16,003 copying build/lib/bioregistry/external/lov/__init__.py -> build/bdist.linux-armv7l/wheel/./bioregistry/external/lov 2025-06-02T09:45:16,005 copying build/lib/bioregistry/external/lov/processed.json -> build/bdist.linux-armv7l/wheel/./bioregistry/external/lov 2025-06-02T09:45:16,018 creating build/bdist.linux-armv7l/wheel/bioregistry/external/edam 2025-06-02T09:45:16,020 copying build/lib/bioregistry/external/edam/__init__.py -> build/bdist.linux-armv7l/wheel/./bioregistry/external/edam 2025-06-02T09:45:16,022 copying build/lib/bioregistry/external/edam/processed.json -> build/bdist.linux-armv7l/wheel/./bioregistry/external/edam 2025-06-02T09:45:16,026 creating build/bdist.linux-armv7l/wheel/bioregistry/external/ontobee 2025-06-02T09:45:16,027 copying build/lib/bioregistry/external/ontobee/__init__.py -> build/bdist.linux-armv7l/wheel/./bioregistry/external/ontobee 2025-06-02T09:45:16,029 copying build/lib/bioregistry/external/ontobee/processed.json -> build/bdist.linux-armv7l/wheel/./bioregistry/external/ontobee 2025-06-02T09:45:16,034 creating build/bdist.linux-armv7l/wheel/bioregistry/external/fairsharing 2025-06-02T09:45:16,035 copying build/lib/bioregistry/external/fairsharing/__init__.py -> build/bdist.linux-armv7l/wheel/./bioregistry/external/fairsharing 2025-06-02T09:45:16,038 copying build/lib/bioregistry/external/fairsharing/processed.json -> build/bdist.linux-armv7l/wheel/./bioregistry/external/fairsharing 2025-06-02T09:45:16,058 copying build/lib/bioregistry/external/align.py -> build/bdist.linux-armv7l/wheel/./bioregistry/external 2025-06-02T09:45:16,060 creating build/bdist.linux-armv7l/wheel/bioregistry/external/hl7 2025-06-02T09:45:16,061 copying build/lib/bioregistry/external/hl7/OID_Report.csv -> build/bdist.linux-armv7l/wheel/./bioregistry/external/hl7 2025-06-02T09:45:16,070 copying build/lib/bioregistry/external/hl7/__init__.py -> build/bdist.linux-armv7l/wheel/./bioregistry/external/hl7 2025-06-02T09:45:16,072 creating build/bdist.linux-armv7l/wheel/bioregistry/external/bartoc 2025-06-02T09:45:16,074 copying build/lib/bioregistry/external/bartoc/__init__.py -> build/bdist.linux-armv7l/wheel/./bioregistry/external/bartoc 2025-06-02T09:45:16,076 copying build/lib/bioregistry/external/bartoc/processed.json -> build/bdist.linux-armv7l/wheel/./bioregistry/external/bartoc 2025-06-02T09:45:16,181 creating build/bdist.linux-armv7l/wheel/bioregistry/external/wikidata 2025-06-02T09:45:16,182 copying build/lib/bioregistry/external/wikidata/__init__.py -> build/bdist.linux-armv7l/wheel/./bioregistry/external/wikidata 2025-06-02T09:45:16,184 copying build/lib/bioregistry/external/wikidata/processed.json -> build/bdist.linux-armv7l/wheel/./bioregistry/external/wikidata 2025-06-02T09:45:16,196 creating build/bdist.linux-armv7l/wheel/bioregistry/external/cellosaurus 2025-06-02T09:45:16,197 copying build/lib/bioregistry/external/cellosaurus/__init__.py -> build/bdist.linux-armv7l/wheel/./bioregistry/external/cellosaurus 2025-06-02T09:45:16,200 copying build/lib/bioregistry/external/cellosaurus/processed.json -> build/bdist.linux-armv7l/wheel/./bioregistry/external/cellosaurus 2025-06-02T09:45:16,204 creating build/bdist.linux-armv7l/wheel/bioregistry/external/n2t 2025-06-02T09:45:16,205 copying build/lib/bioregistry/external/n2t/__init__.py -> build/bdist.linux-armv7l/wheel/./bioregistry/external/n2t 2025-06-02T09:45:16,208 copying build/lib/bioregistry/external/n2t/processed.json -> build/bdist.linux-armv7l/wheel/./bioregistry/external/n2t 2025-06-02T09:45:16,220 creating build/bdist.linux-armv7l/wheel/bioregistry/external/obofoundry 2025-06-02T09:45:16,221 copying build/lib/bioregistry/external/obofoundry/__init__.py -> build/bdist.linux-armv7l/wheel/./bioregistry/external/obofoundry 2025-06-02T09:45:16,224 copying build/lib/bioregistry/external/obofoundry/processed.json -> build/bdist.linux-armv7l/wheel/./bioregistry/external/obofoundry 2025-06-02T09:45:16,232 creating build/bdist.linux-armv7l/wheel/bioregistry/external/prefixcommons 2025-06-02T09:45:16,233 copying build/lib/bioregistry/external/prefixcommons/__init__.py -> build/bdist.linux-armv7l/wheel/./bioregistry/external/prefixcommons 2025-06-02T09:45:16,236 copying build/lib/bioregistry/external/prefixcommons/processed.json -> build/bdist.linux-armv7l/wheel/./bioregistry/external/prefixcommons 2025-06-02T09:45:16,250 creating build/bdist.linux-armv7l/wheel/bioregistry/external/rrid 2025-06-02T09:45:16,251 copying build/lib/bioregistry/external/rrid/__init__.py -> build/bdist.linux-armv7l/wheel/./bioregistry/external/rrid 2025-06-02T09:45:16,254 creating build/bdist.linux-armv7l/wheel/bioregistry/external/uniprot 2025-06-02T09:45:16,255 copying build/lib/bioregistry/external/uniprot/__init__.py -> build/bdist.linux-armv7l/wheel/./bioregistry/external/uniprot 2025-06-02T09:45:16,257 copying build/lib/bioregistry/external/uniprot/processed.json -> build/bdist.linux-armv7l/wheel/./bioregistry/external/uniprot 2025-06-02T09:45:16,261 creating build/bdist.linux-armv7l/wheel/bioregistry/external/biolink 2025-06-02T09:45:16,262 copying build/lib/bioregistry/external/biolink/processing_biolink.json -> build/bdist.linux-armv7l/wheel/./bioregistry/external/biolink 2025-06-02T09:45:16,264 copying build/lib/bioregistry/external/biolink/__init__.py -> build/bdist.linux-armv7l/wheel/./bioregistry/external/biolink 2025-06-02T09:45:16,266 copying build/lib/bioregistry/external/biolink/processed.json -> build/bdist.linux-armv7l/wheel/./bioregistry/external/biolink 2025-06-02T09:45:16,269 creating build/bdist.linux-armv7l/wheel/bioregistry/external/cheminf 2025-06-02T09:45:16,271 copying build/lib/bioregistry/external/cheminf/__init__.py -> build/bdist.linux-armv7l/wheel/./bioregistry/external/cheminf 2025-06-02T09:45:16,273 copying build/lib/bioregistry/external/cheminf/processed.json -> build/bdist.linux-armv7l/wheel/./bioregistry/external/cheminf 2025-06-02T09:45:16,275 copying build/lib/bioregistry/external/alignment_utils.py -> build/bdist.linux-armv7l/wheel/./bioregistry/external 2025-06-02T09:45:16,278 creating build/bdist.linux-armv7l/wheel/bioregistry/external/zazuko 2025-06-02T09:45:16,279 copying build/lib/bioregistry/external/zazuko/__init__.py -> build/bdist.linux-armv7l/wheel/./bioregistry/external/zazuko 2025-06-02T09:45:16,282 copying build/lib/bioregistry/external/zazuko/processed.json -> build/bdist.linux-armv7l/wheel/./bioregistry/external/zazuko 2025-06-02T09:45:16,285 creating build/bdist.linux-armv7l/wheel/bioregistry/external/togoid 2025-06-02T09:45:16,286 copying build/lib/bioregistry/external/togoid/__init__.py -> build/bdist.linux-armv7l/wheel/./bioregistry/external/togoid 2025-06-02T09:45:16,289 copying build/lib/bioregistry/external/togoid/processed.json -> build/bdist.linux-armv7l/wheel/./bioregistry/external/togoid 2025-06-02T09:45:16,294 creating build/bdist.linux-armv7l/wheel/bioregistry/external/re3data 2025-06-02T09:45:16,295 copying build/lib/bioregistry/external/re3data/__init__.py -> build/bdist.linux-armv7l/wheel/./bioregistry/external/re3data 2025-06-02T09:45:16,298 copying build/lib/bioregistry/external/re3data/processed.json -> build/bdist.linux-armv7l/wheel/./bioregistry/external/re3data 2025-06-02T09:45:16,348 creating build/bdist.linux-armv7l/wheel/bioregistry/external/ncbi 2025-06-02T09:45:16,350 copying build/lib/bioregistry/external/ncbi/__init__.py -> build/bdist.linux-armv7l/wheel/./bioregistry/external/ncbi 2025-06-02T09:45:16,352 copying build/lib/bioregistry/external/ncbi/processed.json -> build/bdist.linux-armv7l/wheel/./bioregistry/external/ncbi 2025-06-02T09:45:16,355 creating build/bdist.linux-armv7l/wheel/bioregistry/external/pathguide 2025-06-02T09:45:16,356 copying build/lib/bioregistry/external/pathguide/__init__.py -> build/bdist.linux-armv7l/wheel/./bioregistry/external/pathguide 2025-06-02T09:45:16,359 copying build/lib/bioregistry/external/__init__.py -> build/bdist.linux-armv7l/wheel/./bioregistry/external 2025-06-02T09:45:16,361 creating build/bdist.linux-armv7l/wheel/bioregistry/external/bioportal 2025-06-02T09:45:16,362 copying build/lib/bioregistry/external/bioportal/ecoportal.json -> build/bdist.linux-armv7l/wheel/./bioregistry/external/bioportal 2025-06-02T09:45:16,366 copying build/lib/bioregistry/external/bioportal/bioportal.json -> build/bdist.linux-armv7l/wheel/./bioregistry/external/bioportal 2025-06-02T09:45:16,382 copying build/lib/bioregistry/external/bioportal/ecoportal.py -> build/bdist.linux-armv7l/wheel/./bioregistry/external/bioportal 2025-06-02T09:45:16,384 copying build/lib/bioregistry/external/bioportal/agroportal.py -> build/bdist.linux-armv7l/wheel/./bioregistry/external/bioportal 2025-06-02T09:45:16,386 copying build/lib/bioregistry/external/bioportal/bioportal.py -> build/bdist.linux-armv7l/wheel/./bioregistry/external/bioportal 2025-06-02T09:45:16,388 copying build/lib/bioregistry/external/bioportal/__init__.py -> build/bdist.linux-armv7l/wheel/./bioregistry/external/bioportal 2025-06-02T09:45:16,390 copying build/lib/bioregistry/external/bioportal/agroportal.json -> build/bdist.linux-armv7l/wheel/./bioregistry/external/bioportal 2025-06-02T09:45:16,398 creating build/bdist.linux-armv7l/wheel/bioregistry/external/aberowl 2025-06-02T09:45:16,399 copying build/lib/bioregistry/external/aberowl/__init__.py -> build/bdist.linux-armv7l/wheel/./bioregistry/external/aberowl 2025-06-02T09:45:16,402 copying build/lib/bioregistry/external/aberowl/processed.json -> build/bdist.linux-armv7l/wheel/./bioregistry/external/aberowl 2025-06-02T09:45:16,425 creating build/bdist.linux-armv7l/wheel/bioregistry/external/ols 2025-06-02T09:45:16,426 copying build/lib/bioregistry/external/ols/processing_ols.json -> build/bdist.linux-armv7l/wheel/./bioregistry/external/ols 2025-06-02T09:45:16,429 copying build/lib/bioregistry/external/ols/__init__.py -> build/bdist.linux-armv7l/wheel/./bioregistry/external/ols 2025-06-02T09:45:16,432 copying build/lib/bioregistry/external/ols/processed.json -> build/bdist.linux-armv7l/wheel/./bioregistry/external/ols 2025-06-02T09:45:16,437 copying build/lib/bioregistry/lint.py -> build/bdist.linux-armv7l/wheel/./bioregistry 2025-06-02T09:45:16,439 copying build/lib/bioregistry/parse_version_iri.py -> build/bdist.linux-armv7l/wheel/./bioregistry 2025-06-02T09:45:16,441 copying build/lib/bioregistry/py.typed -> build/bdist.linux-armv7l/wheel/./bioregistry 2025-06-02T09:45:16,443 copying build/lib/bioregistry/utils.py -> build/bdist.linux-armv7l/wheel/./bioregistry 2025-06-02T09:45:16,446 creating build/bdist.linux-armv7l/wheel/bioregistry/schema 2025-06-02T09:45:16,447 copying build/lib/bioregistry/schema/schema.json -> build/bdist.linux-armv7l/wheel/./bioregistry/schema 2025-06-02T09:45:16,451 copying build/lib/bioregistry/schema/struct.py -> build/bdist.linux-armv7l/wheel/./bioregistry/schema 2025-06-02T09:45:16,456 copying build/lib/bioregistry/schema/utils.py -> build/bdist.linux-armv7l/wheel/./bioregistry/schema 2025-06-02T09:45:16,458 copying build/lib/bioregistry/schema/constants.py -> build/bdist.linux-armv7l/wheel/./bioregistry/schema 2025-06-02T09:45:16,461 copying build/lib/bioregistry/schema/__init__.py -> build/bdist.linux-armv7l/wheel/./bioregistry/schema 2025-06-02T09:45:16,463 copying build/lib/bioregistry/metaresource_api.py -> build/bdist.linux-armv7l/wheel/./bioregistry 2025-06-02T09:45:16,465 copying build/lib/bioregistry/license_standardizer.py -> build/bdist.linux-armv7l/wheel/./bioregistry 2025-06-02T09:45:16,467 copying build/lib/bioregistry/cli.py -> build/bdist.linux-armv7l/wheel/./bioregistry 2025-06-02T09:45:16,470 creating build/bdist.linux-armv7l/wheel/bioregistry/benchmarks 2025-06-02T09:45:16,471 copying build/lib/bioregistry/benchmarks/curie_validation.py -> build/bdist.linux-armv7l/wheel/./bioregistry/benchmarks 2025-06-02T09:45:16,474 copying build/lib/bioregistry/benchmarks/curie_parsing.py -> build/bdist.linux-armv7l/wheel/./bioregistry/benchmarks 2025-06-02T09:45:16,477 copying build/lib/bioregistry/benchmarks/cli.py -> build/bdist.linux-armv7l/wheel/./bioregistry/benchmarks 2025-06-02T09:45:16,479 copying build/lib/bioregistry/benchmarks/__main__.py -> build/bdist.linux-armv7l/wheel/./bioregistry/benchmarks 2025-06-02T09:45:16,481 copying build/lib/bioregistry/benchmarks/__init__.py -> build/bdist.linux-armv7l/wheel/./bioregistry/benchmarks 2025-06-02T09:45:16,483 copying build/lib/bioregistry/benchmarks/uri_parsing.py -> build/bdist.linux-armv7l/wheel/./bioregistry/benchmarks 2025-06-02T09:45:16,486 creating build/bdist.linux-armv7l/wheel/bioregistry/health 2025-06-02T09:45:16,487 copying build/lib/bioregistry/health/check_providers.py -> build/bdist.linux-armv7l/wheel/./bioregistry/health 2025-06-02T09:45:16,490 copying build/lib/bioregistry/health/cli.py -> build/bdist.linux-armv7l/wheel/./bioregistry/health 2025-06-02T09:45:16,492 copying build/lib/bioregistry/health/check_homepages.py -> build/bdist.linux-armv7l/wheel/./bioregistry/health 2025-06-02T09:45:16,494 copying build/lib/bioregistry/health/__main__.py -> build/bdist.linux-armv7l/wheel/./bioregistry/health 2025-06-02T09:45:16,497 copying build/lib/bioregistry/health/__init__.py -> build/bdist.linux-armv7l/wheel/./bioregistry/health 2025-06-02T09:45:16,499 copying build/lib/bioregistry/summary.py -> build/bdist.linux-armv7l/wheel/./bioregistry 2025-06-02T09:45:16,502 copying build/lib/bioregistry/record_accumulator.py -> build/bdist.linux-armv7l/wheel/./bioregistry 2025-06-02T09:45:16,505 copying build/lib/bioregistry/parse_iri.py -> build/bdist.linux-armv7l/wheel/./bioregistry 2025-06-02T09:45:16,508 copying build/lib/bioregistry/pandas.py -> build/bdist.linux-armv7l/wheel/./bioregistry 2025-06-02T09:45:16,511 copying build/lib/bioregistry/upload_ndex.py -> build/bdist.linux-armv7l/wheel/./bioregistry 2025-06-02T09:45:16,514 copying build/lib/bioregistry/resource_manager.py -> build/bdist.linux-armv7l/wheel/./bioregistry 2025-06-02T09:45:16,520 creating build/bdist.linux-armv7l/wheel/bioregistry/curation 2025-06-02T09:45:16,521 copying build/lib/bioregistry/curation/make_health_report_curation_sheet.py -> build/bdist.linux-armv7l/wheel/./bioregistry/curation 2025-06-02T09:45:16,523 copying build/lib/bioregistry/curation/map_bartoc_via_wikidata.py -> build/bdist.linux-armv7l/wheel/./bioregistry/curation 2025-06-02T09:45:16,525 copying build/lib/bioregistry/curation/rename_metaprefix.py -> build/bdist.linux-armv7l/wheel/./bioregistry/curation 2025-06-02T09:45:16,527 copying build/lib/bioregistry/curation/cleanup_authors.py -> build/bdist.linux-armv7l/wheel/./bioregistry/curation 2025-06-02T09:45:16,529 copying build/lib/bioregistry/curation/review_pc.py -> build/bdist.linux-armv7l/wheel/./bioregistry/curation 2025-06-02T09:45:16,531 copying build/lib/bioregistry/curation/enrich_publications.py -> build/bdist.linux-armv7l/wheel/./bioregistry/curation 2025-06-02T09:45:16,534 copying build/lib/bioregistry/curation/import_pc_semiautomatic.py -> build/bdist.linux-armv7l/wheel/./bioregistry/curation 2025-06-02T09:45:16,536 copying build/lib/bioregistry/curation/suggest_author_curation.py -> build/bdist.linux-armv7l/wheel/./bioregistry/curation 2025-06-02T09:45:16,538 copying build/lib/bioregistry/curation/literature.py -> build/bdist.linux-armv7l/wheel/./bioregistry/curation 2025-06-02T09:45:16,540 copying build/lib/bioregistry/curation/bulk_import.py -> build/bdist.linux-armv7l/wheel/./bioregistry/curation 2025-06-02T09:45:16,542 copying build/lib/bioregistry/curation/deprecation_diff.py -> build/bdist.linux-armv7l/wheel/./bioregistry/curation 2025-06-02T09:45:16,544 copying build/lib/bioregistry/curation/fix_obo_purls.py -> build/bdist.linux-armv7l/wheel/./bioregistry/curation 2025-06-02T09:45:16,546 copying build/lib/bioregistry/curation/find_contact_groups.py -> build/bdist.linux-armv7l/wheel/./bioregistry/curation 2025-06-02T09:45:16,548 copying build/lib/bioregistry/curation/add_descriptions_from_gs.py -> build/bdist.linux-armv7l/wheel/./bioregistry/curation 2025-06-02T09:45:16,551 copying build/lib/bioregistry/curation/add_examples.py -> build/bdist.linux-armv7l/wheel/./bioregistry/curation 2025-06-02T09:45:16,553 copying build/lib/bioregistry/curation/clean_publications.py -> build/bdist.linux-armv7l/wheel/./bioregistry/curation 2025-06-02T09:45:16,555 copying build/lib/bioregistry/curation/add_ontology_regexes.py -> build/bdist.linux-armv7l/wheel/./bioregistry/curation 2025-06-02T09:45:16,557 copying build/lib/bioregistry/curation/__init__.py -> build/bdist.linux-armv7l/wheel/./bioregistry/curation 2025-06-02T09:45:16,559 copying build/lib/bioregistry/curation/clean_licenses.py -> build/bdist.linux-armv7l/wheel/./bioregistry/curation 2025-06-02T09:45:16,561 copying build/lib/bioregistry/curation/map_re3data_via_fairsharing.py -> build/bdist.linux-armv7l/wheel/./bioregistry/curation 2025-06-02T09:45:16,563 copying build/lib/bioregistry/curation/add_examples_from_ols.py -> build/bdist.linux-armv7l/wheel/./bioregistry/curation 2025-06-02T09:45:16,565 copying build/lib/bioregistry/curation/add_co_providers.py -> build/bdist.linux-armv7l/wheel/./bioregistry/curation 2025-06-02T09:45:16,567 copying build/lib/bioregistry/curation/suggest_uniprot_providers.py -> build/bdist.linux-armv7l/wheel/./bioregistry/curation 2025-06-02T09:45:16,569 copying build/lib/bioregistry/curation/make_description_curation_sheet.py -> build/bdist.linux-armv7l/wheel/./bioregistry/curation 2025-06-02T09:45:16,571 copying build/lib/bioregistry/curation/clean_name_suffixes.py -> build/bdist.linux-armv7l/wheel/./bioregistry/curation 2025-06-02T09:45:16,573 copying build/lib/bioregistry/resolve.py -> build/bdist.linux-armv7l/wheel/./bioregistry 2025-06-02T09:45:16,576 copying build/lib/bioregistry/constants.py -> build/bdist.linux-armv7l/wheel/./bioregistry 2025-06-02T09:45:16,579 copying build/lib/bioregistry/__main__.py -> build/bdist.linux-armv7l/wheel/./bioregistry 2025-06-02T09:45:16,581 copying build/lib/bioregistry/uri_format.py -> build/bdist.linux-armv7l/wheel/./bioregistry 2025-06-02T09:45:16,583 copying build/lib/bioregistry/reference.py -> build/bdist.linux-armv7l/wheel/./bioregistry 2025-06-02T09:45:16,586 creating build/bdist.linux-armv7l/wheel/bioregistry/gh 2025-06-02T09:45:16,587 copying build/lib/bioregistry/gh/github_client.py -> build/bdist.linux-armv7l/wheel/./bioregistry/gh 2025-06-02T09:45:16,590 copying build/lib/bioregistry/gh/new_prefix.py -> build/bdist.linux-armv7l/wheel/./bioregistry/gh 2025-06-02T09:45:16,593 copying build/lib/bioregistry/gh/__init__.py -> build/bdist.linux-armv7l/wheel/./bioregistry/gh 2025-06-02T09:45:16,595 copying build/lib/bioregistry/bibliometrics.py -> build/bdist.linux-armv7l/wheel/./bioregistry 2025-06-02T09:45:16,597 copying build/lib/bioregistry/resolve_identifier.py -> build/bdist.linux-armv7l/wheel/./bioregistry 2025-06-02T09:45:16,600 copying build/lib/bioregistry/__init__.py -> build/bdist.linux-armv7l/wheel/./bioregistry 2025-06-02T09:45:16,603 creating build/bdist.linux-armv7l/wheel/bioregistry/export 2025-06-02T09:45:16,605 copying build/lib/bioregistry/export/yaml_export.py -> build/bdist.linux-armv7l/wheel/./bioregistry/export 2025-06-02T09:45:16,609 copying build/lib/bioregistry/export/tsv_export.py -> build/bdist.linux-armv7l/wheel/./bioregistry/export 2025-06-02T09:45:16,611 copying build/lib/bioregistry/export/tables_export.py -> build/bdist.linux-armv7l/wheel/./bioregistry/export 2025-06-02T09:45:16,614 copying build/lib/bioregistry/export/sssom_export.py -> build/bdist.linux-armv7l/wheel/./bioregistry/export 2025-06-02T09:45:16,616 copying build/lib/bioregistry/export/schema_export.py -> build/bdist.linux-armv7l/wheel/./bioregistry/export 2025-06-02T09:45:16,618 copying build/lib/bioregistry/export/cli.py -> build/bdist.linux-armv7l/wheel/./bioregistry/export 2025-06-02T09:45:16,621 copying build/lib/bioregistry/export/prefixcc.py -> build/bdist.linux-armv7l/wheel/./bioregistry/export 2025-06-02T09:45:16,623 copying build/lib/bioregistry/export/rdf_export.py -> build/bdist.linux-armv7l/wheel/./bioregistry/export 2025-06-02T09:45:16,626 copying build/lib/bioregistry/export/__main__.py -> build/bdist.linux-armv7l/wheel/./bioregistry/export 2025-06-02T09:45:16,628 copying build/lib/bioregistry/export/warnings_export.py -> build/bdist.linux-armv7l/wheel/./bioregistry/export 2025-06-02T09:45:16,632 copying build/lib/bioregistry/export/__init__.py -> build/bdist.linux-armv7l/wheel/./bioregistry/export 2025-06-02T09:45:16,636 copying build/lib/bioregistry/export/prefix_maps.py -> build/bdist.linux-armv7l/wheel/./bioregistry/export 2025-06-02T09:45:16,640 running install_egg_info 2025-06-02T09:45:16,649 Copying src/bioregistry.egg-info to build/bdist.linux-armv7l/wheel/./bioregistry-0.12.11-py3.11.egg-info 2025-06-02T09:45:16,673 running install_scripts 2025-06-02T09:45:16,687 creating build/bdist.linux-armv7l/wheel/bioregistry-0.12.11.dist-info/WHEEL 2025-06-02T09:45:16,690 creating '/tmp/pip-wheel-qea4g9xv/.tmp-mmg8c6zp/bioregistry-0.12.11-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-06-02T09:45:16,694 adding 'bioregistry/__init__.py' 2025-06-02T09:45:16,695 adding 'bioregistry/__main__.py' 2025-06-02T09:45:16,697 adding 'bioregistry/bibliometrics.py' 2025-06-02T09:45:16,698 adding 'bioregistry/cli.py' 2025-06-02T09:45:16,700 adding 'bioregistry/collection_api.py' 2025-06-02T09:45:16,704 adding 'bioregistry/compare.py' 2025-06-02T09:45:16,706 adding 'bioregistry/constants.py' 2025-06-02T09:45:16,707 adding 'bioregistry/license_standardizer.py' 2025-06-02T09:45:16,709 adding 'bioregistry/lint.py' 2025-06-02T09:45:16,710 adding 'bioregistry/metaresource_api.py' 2025-06-02T09:45:16,713 adding 'bioregistry/pandas.py' 2025-06-02T09:45:16,715 adding 'bioregistry/parse_iri.py' 2025-06-02T09:45:16,716 adding 'bioregistry/parse_version_iri.py' 2025-06-02T09:45:16,717 adding 'bioregistry/py.typed' 2025-06-02T09:45:16,720 adding 'bioregistry/record_accumulator.py' 2025-06-02T09:45:16,721 adding 'bioregistry/reference.py' 2025-06-02T09:45:16,725 adding 'bioregistry/resolve.py' 2025-06-02T09:45:16,728 adding 'bioregistry/resolve_identifier.py' 2025-06-02T09:45:16,736 adding 'bioregistry/resource_manager.py' 2025-06-02T09:45:16,738 adding 'bioregistry/schema_utils.py' 2025-06-02T09:45:16,740 adding 'bioregistry/summary.py' 2025-06-02T09:45:16,742 adding 'bioregistry/upload_ndex.py' 2025-06-02T09:45:16,743 adding 'bioregistry/uri_format.py' 2025-06-02T09:45:16,745 adding 'bioregistry/utils.py' 2025-06-02T09:45:16,747 adding 'bioregistry/version.py' 2025-06-02T09:45:16,748 adding 'bioregistry/analysis/__init__.py' 2025-06-02T09:45:16,750 adding 'bioregistry/analysis/bioregistry_diff.py' 2025-06-02T09:45:16,752 adding 'bioregistry/analysis/mapping_checking.py' 2025-06-02T09:45:16,755 adding 'bioregistry/analysis/paper_ranking.py' 2025-06-02T09:45:16,757 adding 'bioregistry/app/__init__.py' 2025-06-02T09:45:16,759 adding 'bioregistry/app/api.py' 2025-06-02T09:45:16,761 adding 'bioregistry/app/cli.py' 2025-06-02T09:45:16,762 adding 'bioregistry/app/constants.py' 2025-06-02T09:45:16,764 adding 'bioregistry/app/impl.py' 2025-06-02T09:45:16,766 adding 'bioregistry/app/proxies.py' 2025-06-02T09:45:16,767 adding 'bioregistry/app/test.py' 2025-06-02T09:45:16,770 adding 'bioregistry/app/ui.py' 2025-06-02T09:45:16,772 adding 'bioregistry/app/utils.py' 2025-06-02T09:45:16,774 adding 'bioregistry/app/wsgi.py' 2025-06-02T09:45:16,776 adding 'bioregistry/app/static/funding-manifest-urls.txt' 2025-06-02T09:45:16,894 adding 'bioregistry/app/static/logo.svg' 2025-06-02T09:45:16,901 adding 'bioregistry/app/templates/base.html' 2025-06-02T09:45:16,903 adding 'bioregistry/app/templates/collection.html' 2025-06-02T09:45:16,904 adding 'bioregistry/app/templates/collections.html' 2025-06-02T09:45:16,905 adding 'bioregistry/app/templates/context.html' 2025-06-02T09:45:16,907 adding 'bioregistry/app/templates/contexts.html' 2025-06-02T09:45:16,908 adding 'bioregistry/app/templates/contributor.html' 2025-06-02T09:45:16,910 adding 'bioregistry/app/templates/contributors.html' 2025-06-02T09:45:16,911 adding 'bioregistry/app/templates/home.html' 2025-06-02T09:45:16,913 adding 'bioregistry/app/templates/macros.html' 2025-06-02T09:45:16,914 adding 'bioregistry/app/templates/metaresource.html' 2025-06-02T09:45:16,915 adding 'bioregistry/app/templates/metaresources.html' 2025-06-02T09:45:16,917 adding 'bioregistry/app/templates/prose.html' 2025-06-02T09:45:16,918 adding 'bioregistry/app/templates/reference.html' 2025-06-02T09:45:16,921 adding 'bioregistry/app/templates/resource.html' 2025-06-02T09:45:16,923 adding 'bioregistry/app/templates/resources.html' 2025-06-02T09:45:16,925 adding 'bioregistry/app/templates/highlights/keywords.html' 2025-06-02T09:45:16,926 adding 'bioregistry/app/templates/highlights/owners.html' 2025-06-02T09:45:16,927 adding 'bioregistry/app/templates/highlights/relations.html' 2025-06-02T09:45:16,929 adding 'bioregistry/app/templates/highlights/twitter.html' 2025-06-02T09:45:16,931 adding 'bioregistry/app/templates/meta/access.html' 2025-06-02T09:45:16,933 adding 'bioregistry/app/templates/meta/acknowledgements.html' 2025-06-02T09:45:16,935 adding 'bioregistry/app/templates/meta/download.html' 2025-06-02T09:45:16,937 adding 'bioregistry/app/templates/meta/related.html' 2025-06-02T09:45:16,938 adding 'bioregistry/app/templates/meta/schema.html' 2025-06-02T09:45:16,941 adding 'bioregistry/app/templates/meta/summary.html' 2025-06-02T09:45:16,943 adding 'bioregistry/app/templates/meta/sustainability.html' 2025-06-02T09:45:16,945 adding 'bioregistry/app/templates/resolve_errors/disallowed_identifier.html' 2025-06-02T09:45:16,946 adding 'bioregistry/app/templates/resolve_errors/invalid_identifier.html' 2025-06-02T09:45:16,947 adding 'bioregistry/app/templates/resolve_errors/missing_prefix.html' 2025-06-02T09:45:16,949 adding 'bioregistry/app/templates/resolve_errors/missing_providers.html' 2025-06-02T09:45:16,950 adding 'bioregistry/benchmarks/__init__.py' 2025-06-02T09:45:16,952 adding 'bioregistry/benchmarks/__main__.py' 2025-06-02T09:45:16,953 adding 'bioregistry/benchmarks/cli.py' 2025-06-02T09:45:16,954 adding 'bioregistry/benchmarks/curie_parsing.py' 2025-06-02T09:45:16,956 adding 'bioregistry/benchmarks/curie_validation.py' 2025-06-02T09:45:16,957 adding 'bioregistry/benchmarks/uri_parsing.py' 2025-06-02T09:45:16,959 adding 'bioregistry/curation/__init__.py' 2025-06-02T09:45:16,961 adding 'bioregistry/curation/add_co_providers.py' 2025-06-02T09:45:16,962 adding 'bioregistry/curation/add_descriptions_from_gs.py' 2025-06-02T09:45:16,963 adding 'bioregistry/curation/add_examples.py' 2025-06-02T09:45:16,965 adding 'bioregistry/curation/add_examples_from_ols.py' 2025-06-02T09:45:16,966 adding 'bioregistry/curation/add_ontology_regexes.py' 2025-06-02T09:45:16,967 adding 'bioregistry/curation/bulk_import.py' 2025-06-02T09:45:16,969 adding 'bioregistry/curation/clean_licenses.py' 2025-06-02T09:45:16,970 adding 'bioregistry/curation/clean_name_suffixes.py' 2025-06-02T09:45:16,971 adding 'bioregistry/curation/clean_publications.py' 2025-06-02T09:45:16,973 adding 'bioregistry/curation/cleanup_authors.py' 2025-06-02T09:45:16,974 adding 'bioregistry/curation/deprecation_diff.py' 2025-06-02T09:45:16,976 adding 'bioregistry/curation/enrich_publications.py' 2025-06-02T09:45:16,977 adding 'bioregistry/curation/find_contact_groups.py' 2025-06-02T09:45:16,978 adding 'bioregistry/curation/fix_obo_purls.py' 2025-06-02T09:45:16,980 adding 'bioregistry/curation/import_pc_semiautomatic.py' 2025-06-02T09:45:16,981 adding 'bioregistry/curation/literature.py' 2025-06-02T09:45:16,982 adding 'bioregistry/curation/make_description_curation_sheet.py' 2025-06-02T09:45:16,984 adding 'bioregistry/curation/make_health_report_curation_sheet.py' 2025-06-02T09:45:16,985 adding 'bioregistry/curation/map_bartoc_via_wikidata.py' 2025-06-02T09:45:16,987 adding 'bioregistry/curation/map_re3data_via_fairsharing.py' 2025-06-02T09:45:16,988 adding 'bioregistry/curation/rename_metaprefix.py' 2025-06-02T09:45:16,989 adding 'bioregistry/curation/review_pc.py' 2025-06-02T09:45:16,990 adding 'bioregistry/curation/suggest_author_curation.py' 2025-06-02T09:45:16,992 adding 'bioregistry/curation/suggest_uniprot_providers.py' 2025-06-02T09:45:16,994 adding 'bioregistry/data/README.md' 2025-06-02T09:45:16,995 adding 'bioregistry/data/__init__.py' 2025-06-02T09:45:17,478 adding 'bioregistry/data/bioregistry.json' 2025-06-02T09:45:17,514 adding 'bioregistry/data/collections.json' 2025-06-02T09:45:17,515 adding 'bioregistry/data/contexts.json' 2025-06-02T09:45:17,517 adding 'bioregistry/data/curated_mappings.sssom.tsv' 2025-06-02T09:45:17,519 adding 'bioregistry/data/curated_papers.tsv' 2025-06-02T09:45:17,524 adding 'bioregistry/data/metaregistry.json' 2025-06-02T09:45:17,526 adding 'bioregistry/export/__init__.py' 2025-06-02T09:45:17,527 adding 'bioregistry/export/__main__.py' 2025-06-02T09:45:17,528 adding 'bioregistry/export/cli.py' 2025-06-02T09:45:17,529 adding 'bioregistry/export/prefix_maps.py' 2025-06-02T09:45:17,531 adding 'bioregistry/export/prefixcc.py' 2025-06-02T09:45:17,533 adding 'bioregistry/export/rdf_export.py' 2025-06-02T09:45:17,753 adding 'bioregistry/export/schema_export.py' 2025-06-02T09:45:17,756 adding 'bioregistry/export/sssom_export.py' 2025-06-02T09:45:17,759 adding 'bioregistry/export/tables_export.py' 2025-06-02T09:45:17,762 adding 'bioregistry/export/tsv_export.py' 2025-06-02T09:45:17,765 adding 'bioregistry/export/warnings_export.py' 2025-06-02T09:45:17,768 adding 'bioregistry/export/yaml_export.py' 2025-06-02T09:45:17,772 adding 'bioregistry/external/__init__.py' 2025-06-02T09:45:17,774 adding 'bioregistry/external/align.py' 2025-06-02T09:45:17,776 adding 'bioregistry/external/alignment_utils.py' 2025-06-02T09:45:17,778 adding 'bioregistry/external/aberowl/__init__.py' 2025-06-02T09:45:17,873 adding 'bioregistry/external/aberowl/processed.json' 2025-06-02T09:45:17,880 adding 'bioregistry/external/bartoc/__init__.py' 2025-06-02T09:45:18,255 adding 'bioregistry/external/bartoc/processed.json' 2025-06-02T09:45:18,272 adding 'bioregistry/external/biocontext/__init__.py' 2025-06-02T09:45:18,277 adding 'bioregistry/external/biocontext/processed.json' 2025-06-02T09:45:18,279 adding 'bioregistry/external/biolink/__init__.py' 2025-06-02T09:45:18,281 adding 'bioregistry/external/biolink/processed.json' 2025-06-02T09:45:18,282 adding 'bioregistry/external/biolink/processing_biolink.json' 2025-06-02T09:45:18,285 adding 'bioregistry/external/bioportal/__init__.py' 2025-06-02T09:45:18,312 adding 'bioregistry/external/bioportal/agroportal.json' 2025-06-02T09:45:18,314 adding 'bioregistry/external/bioportal/agroportal.py' 2025-06-02T09:45:18,414 adding 'bioregistry/external/bioportal/bioportal.json' 2025-06-02T09:45:18,420 adding 'bioregistry/external/bioportal/bioportal.py' 2025-06-02T09:45:18,427 adding 'bioregistry/external/bioportal/ecoportal.json' 2025-06-02T09:45:18,428 adding 'bioregistry/external/bioportal/ecoportal.py' 2025-06-02T09:45:18,430 adding 'bioregistry/external/cellosaurus/__init__.py' 2025-06-02T09:45:18,433 adding 'bioregistry/external/cellosaurus/processed.json' 2025-06-02T09:45:18,436 adding 'bioregistry/external/cheminf/__init__.py' 2025-06-02T09:45:18,437 adding 'bioregistry/external/cheminf/processed.json' 2025-06-02T09:45:18,439 adding 'bioregistry/external/cropoct/__init__.py' 2025-06-02T09:45:18,441 adding 'bioregistry/external/cropoct/processed.json' 2025-06-02T09:45:18,443 adding 'bioregistry/external/edam/__init__.py' 2025-06-02T09:45:18,447 adding 'bioregistry/external/edam/processed.json' 2025-06-02T09:45:18,449 adding 'bioregistry/external/fairsharing/__init__.py' 2025-06-02T09:45:18,564 adding 'bioregistry/external/fairsharing/processed.json' 2025-06-02T09:45:18,571 adding 'bioregistry/external/go/__init__.py' 2025-06-02T09:45:18,582 adding 'bioregistry/external/go/processed.json' 2025-06-02T09:45:18,584 adding 'bioregistry/external/go/processing_go.json' 2025-06-02T09:45:18,620 adding 'bioregistry/external/hl7/OID_Report.csv' 2025-06-02T09:45:18,623 adding 'bioregistry/external/hl7/__init__.py' 2025-06-02T09:45:18,625 adding 'bioregistry/external/integbio/__init__.py' 2025-06-02T09:45:18,856 adding 'bioregistry/external/integbio/processed.json' 2025-06-02T09:45:18,869 adding 'bioregistry/external/lov/__init__.py' 2025-06-02T09:45:18,923 adding 'bioregistry/external/lov/processed.json' 2025-06-02T09:45:18,928 adding 'bioregistry/external/miriam/__init__.py' 2025-06-02T09:45:18,991 adding 'bioregistry/external/miriam/processed.json' 2025-06-02T09:45:18,996 adding 'bioregistry/external/n2t/__init__.py' 2025-06-02T09:45:19,045 adding 'bioregistry/external/n2t/processed.json' 2025-06-02T09:45:19,050 adding 'bioregistry/external/ncbi/__init__.py' 2025-06-02T09:45:19,052 adding 'bioregistry/external/ncbi/processed.json' 2025-06-02T09:45:19,054 adding 'bioregistry/external/obofoundry/__init__.py' 2025-06-02T09:45:19,073 adding 'bioregistry/external/obofoundry/processed.json' 2025-06-02T09:45:19,077 adding 'bioregistry/external/ols/__init__.py' 2025-06-02T09:45:19,092 adding 'bioregistry/external/ols/processed.json' 2025-06-02T09:45:19,095 adding 'bioregistry/external/ols/processing_ols.json' 2025-06-02T09:45:19,097 adding 'bioregistry/external/ontobee/__init__.py' 2025-06-02T09:45:19,099 adding 'bioregistry/external/ontobee/processed.json' 2025-06-02T09:45:19,101 adding 'bioregistry/external/pathguide/__init__.py' 2025-06-02T09:45:19,103 adding 'bioregistry/external/prefixcommons/__init__.py' 2025-06-02T09:45:19,164 adding 'bioregistry/external/prefixcommons/processed.json' 2025-06-02T09:45:19,170 adding 'bioregistry/external/re3data/__init__.py' 2025-06-02T09:45:19,583 adding 'bioregistry/external/re3data/processed.json' 2025-06-02T09:45:19,601 adding 'bioregistry/external/rrid/__init__.py' 2025-06-02T09:45:19,603 adding 'bioregistry/external/togoid/__init__.py' 2025-06-02T09:45:19,611 adding 'bioregistry/external/togoid/processed.json' 2025-06-02T09:45:19,613 adding 'bioregistry/external/uniprot/__init__.py' 2025-06-02T09:45:19,618 adding 'bioregistry/external/uniprot/processed.json' 2025-06-02T09:45:19,621 adding 'bioregistry/external/wikidata/__init__.py' 2025-06-02T09:45:19,658 adding 'bioregistry/external/wikidata/processed.json' 2025-06-02T09:45:19,662 adding 'bioregistry/external/zazuko/__init__.py' 2025-06-02T09:45:19,664 adding 'bioregistry/external/zazuko/processed.json' 2025-06-02T09:45:19,665 adding 'bioregistry/gh/__init__.py' 2025-06-02T09:45:19,667 adding 'bioregistry/gh/github_client.py' 2025-06-02T09:45:19,670 adding 'bioregistry/gh/new_prefix.py' 2025-06-02T09:45:19,671 adding 'bioregistry/health/__init__.py' 2025-06-02T09:45:19,672 adding 'bioregistry/health/__main__.py' 2025-06-02T09:45:19,674 adding 'bioregistry/health/check_homepages.py' 2025-06-02T09:45:19,676 adding 'bioregistry/health/check_providers.py' 2025-06-02T09:45:19,677 adding 'bioregistry/health/cli.py' 2025-06-02T09:45:19,679 adding 'bioregistry/schema/__init__.py' 2025-06-02T09:45:19,681 adding 'bioregistry/schema/constants.py' 2025-06-02T09:45:19,686 adding 'bioregistry/schema/schema.json' 2025-06-02T09:45:19,701 adding 'bioregistry/schema/struct.py' 2025-06-02T09:45:19,703 adding 'bioregistry/schema/utils.py' 2025-06-02T09:45:19,705 adding 'bioregistry/validate/__init__.py' 2025-06-02T09:45:19,706 adding 'bioregistry/validate/cli.py' 2025-06-02T09:45:19,707 adding 'bioregistry/validate/utils.py' 2025-06-02T09:45:19,710 adding 'bioregistry-0.12.11.dist-info/licenses/LICENSE' 2025-06-02T09:45:19,713 adding 'bioregistry-0.12.11.dist-info/METADATA' 2025-06-02T09:45:19,714 adding 'bioregistry-0.12.11.dist-info/WHEEL' 2025-06-02T09:45:19,715 adding 'bioregistry-0.12.11.dist-info/entry_points.txt' 2025-06-02T09:45:19,716 adding 'bioregistry-0.12.11.dist-info/top_level.txt' 2025-06-02T09:45:19,720 adding 'bioregistry-0.12.11.dist-info/RECORD' 2025-06-02T09:45:19,776 removing build/bdist.linux-armv7l/wheel 2025-06-02T09:45:19,957 Building wheel for bioregistry (pyproject.toml): finished with status 'done' 2025-06-02T09:45:20,074 Created wheel for bioregistry: filename=bioregistry-0.12.11-py3-none-any.whl size=5423034 sha256=4cd3a07359bfe3e0bf65bd8d10d304aaeb633ff15624eea7db75a6f05aafb145 2025-06-02T09:45:20,075 Stored in directory: /tmp/pip-ephem-wheel-cache-u3w700mn/wheels/7e/6d/6d/b8b5f9776e212fbb8a8e6ae03c5f6576a7c6e3eabd39723850 2025-06-02T09:45:20,105 Successfully built bioregistry 2025-06-02T09:45:20,240 Removed build tracker: '/tmp/pip-build-tracker-gp80x3u4'