2025-06-03T00:46:23,080 Created temporary directory: /tmp/pip-build-tracker-k3fcy2w0
2025-06-03T00:46:23,081 Initialized build tracking at /tmp/pip-build-tracker-k3fcy2w0
2025-06-03T00:46:23,081 Created build tracker: /tmp/pip-build-tracker-k3fcy2w0
2025-06-03T00:46:23,082 Entered build tracker: /tmp/pip-build-tracker-k3fcy2w0
2025-06-03T00:46:23,082 Created temporary directory: /tmp/pip-wheel-6hj2hfil
2025-06-03T00:46:23,086 Created temporary directory: /tmp/pip-ephem-wheel-cache-q1g4gssb
2025-06-03T00:46:23,142 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-06-03T00:46:23,145 2 location(s) to search for versions of pybioquanta:
2025-06-03T00:46:23,145 * https://pypi.org/simple/pybioquanta/
2025-06-03T00:46:23,145 * https://www.piwheels.org/simple/pybioquanta/
2025-06-03T00:46:23,145 Fetching project page and analyzing links: https://pypi.org/simple/pybioquanta/
2025-06-03T00:46:23,146 Getting page https://pypi.org/simple/pybioquanta/
2025-06-03T00:46:23,148 Found index url https://pypi.org/simple/
2025-06-03T00:46:23,296 Fetched page https://pypi.org/simple/pybioquanta/ as application/vnd.pypi.simple.v1+json
2025-06-03T00:46:23,298   Skipping link: No binaries permitted for pybioquanta: https://files.pythonhosted.org/packages/e7/9a/86a643942ead528a0f695a1f1506def77b861674cd765c339facbd8dba83/PyBioQuanta-0.1.0-py3-none-any.whl (from https://pypi.org/simple/pybioquanta/) (requires-python:>=3.6)
2025-06-03T00:46:23,299   Found link https://files.pythonhosted.org/packages/4d/0f/38bdad0c9ac27d9b388cf438694ec7d5195aa9869554e9913ce6ece92606/PyBioQuanta-0.1.0.tar.gz (from https://pypi.org/simple/pybioquanta/) (requires-python:>=3.6), version: 0.1.0
2025-06-03T00:46:23,299   Skipping link: No binaries permitted for pybioquanta: https://files.pythonhosted.org/packages/6c/6a/f9f411c22a793922d1f978fe6853fa8e454d85d492db7986e69f7682435f/PyBioQuanta-0.1.1-py3-none-any.whl (from https://pypi.org/simple/pybioquanta/) (requires-python:>=3.6)
2025-06-03T00:46:23,300   Found link https://files.pythonhosted.org/packages/d9/c2/852d38b7752ba2c6fc3ac998b3a79830ab370fd03f661fb97f07b5f0305d/PyBioQuanta-0.1.1.tar.gz (from https://pypi.org/simple/pybioquanta/) (requires-python:>=3.6), version: 0.1.1
2025-06-03T00:46:23,301 Fetching project page and analyzing links: https://www.piwheels.org/simple/pybioquanta/
2025-06-03T00:46:23,301 Getting page https://www.piwheels.org/simple/pybioquanta/
2025-06-03T00:46:23,303 Found index url https://www.piwheels.org/simple/
2025-06-03T00:46:23,467 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/pybioquanta/
2025-06-03T00:46:24,123 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/pybioquanta/
2025-06-03T00:46:25,293 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/pybioquanta/
2025-06-03T00:46:27,463 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/pybioquanta/
2025-06-03T00:46:31,633 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/pybioquanta/
2025-06-03T00:46:31,806 Could not fetch URL https://www.piwheels.org/simple/pybioquanta/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/pybioquanta/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping
2025-06-03T00:46:31,808 Skipping link: not a file: https://www.piwheels.org/simple/pybioquanta/
2025-06-03T00:46:31,809 Skipping link: not a file: https://pypi.org/simple/pybioquanta/
2025-06-03T00:46:31,831 Given no hashes to check 1 links for project 'pybioquanta': discarding no candidates
2025-06-03T00:46:31,833 Collecting pybioquanta==0.1.1
2025-06-03T00:46:31,835   Created temporary directory: /tmp/pip-unpack-2kafbdz5
2025-06-03T00:46:32,067   Downloading PyBioQuanta-0.1.1.tar.gz (3.8 kB)
2025-06-03T00:46:32,113   Added pybioquanta==0.1.1 from https://files.pythonhosted.org/packages/d9/c2/852d38b7752ba2c6fc3ac998b3a79830ab370fd03f661fb97f07b5f0305d/PyBioQuanta-0.1.1.tar.gz to build tracker '/tmp/pip-build-tracker-k3fcy2w0'
2025-06-03T00:46:32,116   Running setup.py (path:/tmp/pip-wheel-6hj2hfil/pybioquanta_b3d762f6439c401686a0c76223e92658/setup.py) egg_info for package pybioquanta
2025-06-03T00:46:32,116   Created temporary directory: /tmp/pip-pip-egg-info-mb1lzmig
2025-06-03T00:46:32,117   Preparing metadata (setup.py): started
2025-06-03T00:46:32,118   Running command python setup.py egg_info
2025-06-03T00:46:32,984   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-06-03T00:46:32,984   !!

2025-06-03T00:46:32,985           ********************************************************************************
2025-06-03T00:46:32,986           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-06-03T00:46:32,987           License :: OSI Approved :: MIT License

2025-06-03T00:46:32,989           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-06-03T00:46:32,989           ********************************************************************************

2025-06-03T00:46:32,990   !!
2025-06-03T00:46:32,991     self._finalize_license_expression()
2025-06-03T00:46:33,014   running egg_info
2025-06-03T00:46:33,044   creating /tmp/pip-pip-egg-info-mb1lzmig/PyBioQuanta.egg-info
2025-06-03T00:46:33,045   writing /tmp/pip-pip-egg-info-mb1lzmig/PyBioQuanta.egg-info/PKG-INFO
2025-06-03T00:46:33,048   writing dependency_links to /tmp/pip-pip-egg-info-mb1lzmig/PyBioQuanta.egg-info/dependency_links.txt
2025-06-03T00:46:33,050   writing top-level names to /tmp/pip-pip-egg-info-mb1lzmig/PyBioQuanta.egg-info/top_level.txt
2025-06-03T00:46:33,051   writing manifest file '/tmp/pip-pip-egg-info-mb1lzmig/PyBioQuanta.egg-info/SOURCES.txt'
2025-06-03T00:46:33,140   reading manifest file '/tmp/pip-pip-egg-info-mb1lzmig/PyBioQuanta.egg-info/SOURCES.txt'
2025-06-03T00:46:33,142   adding license file 'LICENSE'
2025-06-03T00:46:33,145   writing manifest file '/tmp/pip-pip-egg-info-mb1lzmig/PyBioQuanta.egg-info/SOURCES.txt'
2025-06-03T00:46:33,250   Preparing metadata (setup.py): finished with status 'done'
2025-06-03T00:46:33,253   Source in /tmp/pip-wheel-6hj2hfil/pybioquanta_b3d762f6439c401686a0c76223e92658 has version 0.1.1, which satisfies requirement pybioquanta==0.1.1 from https://files.pythonhosted.org/packages/d9/c2/852d38b7752ba2c6fc3ac998b3a79830ab370fd03f661fb97f07b5f0305d/PyBioQuanta-0.1.1.tar.gz
2025-06-03T00:46:33,254   Removed pybioquanta==0.1.1 from https://files.pythonhosted.org/packages/d9/c2/852d38b7752ba2c6fc3ac998b3a79830ab370fd03f661fb97f07b5f0305d/PyBioQuanta-0.1.1.tar.gz from build tracker '/tmp/pip-build-tracker-k3fcy2w0'
2025-06-03T00:46:33,260 Created temporary directory: /tmp/pip-unpack-wg1f3u36
2025-06-03T00:46:33,261 Created temporary directory: /tmp/pip-unpack-whvr72fp
2025-06-03T00:46:33,262 Building wheels for collected packages: pybioquanta
2025-06-03T00:46:33,267   Created temporary directory: /tmp/pip-wheel-2mwedixo
2025-06-03T00:46:33,268   DEPRECATION: Building 'pybioquanta' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'pybioquanta'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-06-03T00:46:33,270   Building wheel for pybioquanta (setup.py): started
2025-06-03T00:46:33,271   Destination directory: /tmp/pip-wheel-2mwedixo
2025-06-03T00:46:33,271   Running command python setup.py bdist_wheel
2025-06-03T00:46:34,106   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-06-03T00:46:34,106   !!

2025-06-03T00:46:34,107           ********************************************************************************
2025-06-03T00:46:34,107           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-06-03T00:46:34,108           License :: OSI Approved :: MIT License

2025-06-03T00:46:34,109           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-06-03T00:46:34,110           ********************************************************************************

2025-06-03T00:46:34,111   !!
2025-06-03T00:46:34,112     self._finalize_license_expression()
2025-06-03T00:46:34,112   running bdist_wheel
2025-06-03T00:46:34,244   running build
2025-06-03T00:46:34,245   running build_py
2025-06-03T00:46:34,275   creating build/lib/PyBioQuanta
2025-06-03T00:46:34,277   copying PyBioQuanta/fasta_reader.py -> build/lib/PyBioQuanta
2025-06-03T00:46:34,279   copying PyBioQuanta/__init__.py -> build/lib/PyBioQuanta
2025-06-03T00:46:34,281   copying PyBioQuanta/random_dna_gen.py -> build/lib/PyBioQuanta
2025-06-03T00:46:34,283   copying PyBioQuanta/motif_finder.py -> build/lib/PyBioQuanta
2025-06-03T00:46:34,285   copying PyBioQuanta/seq_reverser.py -> build/lib/PyBioQuanta
2025-06-03T00:46:34,287   copying PyBioQuanta/gc_calculator.py -> build/lib/PyBioQuanta
2025-06-03T00:46:34,289   copying PyBioQuanta/simple_translator.py -> build/lib/PyBioQuanta
2025-06-03T00:46:34,321   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-06-03T00:46:34,322   !!

2025-06-03T00:46:34,323           ********************************************************************************
2025-06-03T00:46:34,324           Please avoid running ``setup.py`` directly.
2025-06-03T00:46:34,324           Instead, use pypa/build, pypa/installer or other
2025-06-03T00:46:34,325           standards-based tools.

2025-06-03T00:46:34,326           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-06-03T00:46:34,327           or your builds will no longer be supported.

2025-06-03T00:46:34,328           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-06-03T00:46:34,328           ********************************************************************************

2025-06-03T00:46:34,329   !!
2025-06-03T00:46:34,330     self.initialize_options()
2025-06-03T00:46:34,349   installing to build/bdist.linux-armv7l/wheel
2025-06-03T00:46:34,350   running install
2025-06-03T00:46:34,376   running install_lib
2025-06-03T00:46:34,403   creating build/bdist.linux-armv7l/wheel
2025-06-03T00:46:34,405   creating build/bdist.linux-armv7l/wheel/PyBioQuanta
2025-06-03T00:46:34,407   copying build/lib/PyBioQuanta/fasta_reader.py -> build/bdist.linux-armv7l/wheel/./PyBioQuanta
2025-06-03T00:46:34,409   copying build/lib/PyBioQuanta/__init__.py -> build/bdist.linux-armv7l/wheel/./PyBioQuanta
2025-06-03T00:46:34,411   copying build/lib/PyBioQuanta/random_dna_gen.py -> build/bdist.linux-armv7l/wheel/./PyBioQuanta
2025-06-03T00:46:34,413   copying build/lib/PyBioQuanta/motif_finder.py -> build/bdist.linux-armv7l/wheel/./PyBioQuanta
2025-06-03T00:46:34,415   copying build/lib/PyBioQuanta/seq_reverser.py -> build/bdist.linux-armv7l/wheel/./PyBioQuanta
2025-06-03T00:46:34,417   copying build/lib/PyBioQuanta/gc_calculator.py -> build/bdist.linux-armv7l/wheel/./PyBioQuanta
2025-06-03T00:46:34,419   copying build/lib/PyBioQuanta/simple_translator.py -> build/bdist.linux-armv7l/wheel/./PyBioQuanta
2025-06-03T00:46:34,420   running install_egg_info
2025-06-03T00:46:34,458   running egg_info
2025-06-03T00:46:34,486   writing PyBioQuanta.egg-info/PKG-INFO
2025-06-03T00:46:34,489   writing dependency_links to PyBioQuanta.egg-info/dependency_links.txt
2025-06-03T00:46:34,491   writing top-level names to PyBioQuanta.egg-info/top_level.txt
2025-06-03T00:46:34,522   reading manifest file 'PyBioQuanta.egg-info/SOURCES.txt'
2025-06-03T00:46:34,525   adding license file 'LICENSE'
2025-06-03T00:46:34,528   writing manifest file 'PyBioQuanta.egg-info/SOURCES.txt'
2025-06-03T00:46:34,529   Copying PyBioQuanta.egg-info to build/bdist.linux-armv7l/wheel/./PyBioQuanta-0.1.1-py3.11.egg-info
2025-06-03T00:46:34,537   running install_scripts
2025-06-03T00:46:34,548   creating build/bdist.linux-armv7l/wheel/pybioquanta-0.1.1.dist-info/WHEEL
2025-06-03T00:46:34,551   creating '/tmp/pip-wheel-2mwedixo/pybioquanta-0.1.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-06-03T00:46:34,554   adding 'PyBioQuanta/__init__.py'
2025-06-03T00:46:34,555   adding 'PyBioQuanta/fasta_reader.py'
2025-06-03T00:46:34,557   adding 'PyBioQuanta/gc_calculator.py'
2025-06-03T00:46:34,558   adding 'PyBioQuanta/motif_finder.py'
2025-06-03T00:46:34,560   adding 'PyBioQuanta/random_dna_gen.py'
2025-06-03T00:46:34,561   adding 'PyBioQuanta/seq_reverser.py'
2025-06-03T00:46:34,563   adding 'PyBioQuanta/simple_translator.py'
2025-06-03T00:46:34,566   adding 'pybioquanta-0.1.1.dist-info/licenses/LICENSE'
2025-06-03T00:46:34,568   adding 'pybioquanta-0.1.1.dist-info/METADATA'
2025-06-03T00:46:34,570   adding 'pybioquanta-0.1.1.dist-info/WHEEL'
2025-06-03T00:46:34,571   adding 'pybioquanta-0.1.1.dist-info/top_level.txt'
2025-06-03T00:46:34,572   adding 'pybioquanta-0.1.1.dist-info/RECORD'
2025-06-03T00:46:34,573   removing build/bdist.linux-armv7l/wheel
2025-06-03T00:46:34,686   Building wheel for pybioquanta (setup.py): finished with status 'done'
2025-06-03T00:46:34,688   Created wheel for pybioquanta: filename=pybioquanta-0.1.1-py3-none-any.whl size=5197 sha256=6c405ac0baffafcbeef1e37e208c6b74556392fe2322bfe1ef3122c810885332
2025-06-03T00:46:34,690   Stored in directory: /tmp/pip-ephem-wheel-cache-q1g4gssb/wheels/7a/2f/ff/e9a9483d024d47817cc3c4ea1b37a6c4685e26816b8d4d2efe
2025-06-03T00:46:34,700 Successfully built pybioquanta
2025-06-03T00:46:34,703 Removed build tracker: '/tmp/pip-build-tracker-k3fcy2w0'