2025-06-04T04:04:41,814 Created temporary directory: /tmp/pip-build-tracker-jarum9l9 2025-06-04T04:04:41,815 Initialized build tracking at /tmp/pip-build-tracker-jarum9l9 2025-06-04T04:04:41,815 Created build tracker: /tmp/pip-build-tracker-jarum9l9 2025-06-04T04:04:41,816 Entered build tracker: /tmp/pip-build-tracker-jarum9l9 2025-06-04T04:04:41,817 Created temporary directory: /tmp/pip-wheel-won37p03 2025-06-04T04:04:41,821 Created temporary directory: /tmp/pip-ephem-wheel-cache-l5g6asec 2025-06-04T04:04:41,870 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-06-04T04:04:41,872 2 location(s) to search for versions of td2: 2025-06-04T04:04:41,872 * https://pypi.org/simple/td2/ 2025-06-04T04:04:41,872 * https://www.piwheels.org/simple/td2/ 2025-06-04T04:04:41,873 Fetching project page and analyzing links: https://pypi.org/simple/td2/ 2025-06-04T04:04:41,874 Getting page https://pypi.org/simple/td2/ 2025-06-04T04:04:41,876 Found index url https://pypi.org/simple/ 2025-06-04T04:04:42,102 Fetched page https://pypi.org/simple/td2/ as application/vnd.pypi.simple.v1+json 2025-06-04T04:04:42,108 Skipping link: No binaries permitted for td2: https://files.pythonhosted.org/packages/43/52/258b0d913bfa795951cd68eb8f202e56bb686e2ac215bd537f5e5d8523a9/TD2-0.1.0-py3-none-any.whl (from https://pypi.org/simple/td2/) (requires-python:>=3.8) 2025-06-04T04:04:42,110 Found link https://files.pythonhosted.org/packages/ad/37/151603746c26b5ef38676339bbf67afdb530888937fbb8e1e775f27208ac/td2-0.1.0.tar.gz (from https://pypi.org/simple/td2/) (requires-python:>=3.8), version: 0.1.0 2025-06-04T04:04:42,111 Skipping link: No binaries permitted for td2: https://files.pythonhosted.org/packages/f6/f9/c52c232ea9f0677a8dcc8372c808f2db059730d017e5081a1c0ce151398c/TD2-1.0.0-py3-none-any.whl (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9) 2025-06-04T04:04:42,114 Found link https://files.pythonhosted.org/packages/42/df/2123f303f9668376b0783d67b0dc1d77ab320fcd7cd6499b54d2bbdf24ee/td2-1.0.0.tar.gz (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9), version: 1.0.0 2025-06-04T04:04:42,115 Skipping link: No binaries permitted for td2: https://files.pythonhosted.org/packages/ff/a4/ab6be14acf5c1f585afc4881d8fc05f1aa2ba8985326d9af761acf9feaa4/td2-1.0.1-py3-none-any.whl (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9) 2025-06-04T04:04:42,116 Found link https://files.pythonhosted.org/packages/27/76/0de889e7ac948b0a6c8de999fac74484afebb986c22a31f1541ed61cf3a9/td2-1.0.1.tar.gz (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9), version: 1.0.1 2025-06-04T04:04:42,117 Skipping link: No binaries permitted for td2: https://files.pythonhosted.org/packages/0b/85/7fa6d4c7d930f86d60ad89ece226cabe83198b2f640b4936c9b826934d8e/TD2-1.0.2-py3-none-any.whl (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9) 2025-06-04T04:04:42,119 Skipping link: No binaries permitted for td2: https://files.pythonhosted.org/packages/59/7f/c557088b575b11b930a810c4b08d7947c231bfbd6083e23691ab6d4f35d7/td2-1.0.2-py3-none-any.whl (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9) 2025-06-04T04:04:42,120 Found link https://files.pythonhosted.org/packages/03/86/7cacd5aebbaf6de14d05cd2c46ab4d8214bd5674713e018237f19510054f/td2-1.0.2.tar.gz (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9), version: 1.0.2 2025-06-04T04:04:42,121 Skipping link: No binaries permitted for td2: https://files.pythonhosted.org/packages/9c/12/08401c017e913b8fd32b212039af4a257aad486f53600624d391560eb554/TD2-1.0.3-py3-none-any.whl (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9) 2025-06-04T04:04:42,121 Found link https://files.pythonhosted.org/packages/f1/d4/7572f90f0da85e70bd129c15ed61ae301c5897b5e65d3156c602cf62fa1a/td2-1.0.3.tar.gz (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9), version: 1.0.3 2025-06-04T04:04:42,122 Skipping link: No binaries permitted for td2: https://files.pythonhosted.org/packages/c3/e0/adcb22d02f8881bdfce4a3c89003203115487946a2015cb5350d7c8884f3/TD2-1.0.5-py3-none-any.whl (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9) 2025-06-04T04:04:42,123 Found link https://files.pythonhosted.org/packages/d6/33/ef87f351e48b90f3fe892c982e721592fdbbf7b40d9bf34faf0a3a13198b/td2-1.0.5.tar.gz (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9), version: 1.0.5 2025-06-04T04:04:42,124 Skipping link: No binaries permitted for td2: https://files.pythonhosted.org/packages/ab/bc/6cb935774ae1b624faff92638a3422f0f12aeaf5f61ff820adbbd36464fc/td2-1.0.6-py3-none-any.whl (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9) 2025-06-04T04:04:42,124 Found link https://files.pythonhosted.org/packages/ef/4f/51dd7d1bd195d6e58d3efca71051ccd24219e3ad7c50098ecd63d9d83970/td2-1.0.6.tar.gz (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9), version: 1.0.6 2025-06-04T04:04:42,125 Fetching project page and analyzing links: https://www.piwheels.org/simple/td2/ 2025-06-04T04:04:42,125 Getting page https://www.piwheels.org/simple/td2/ 2025-06-04T04:04:42,127 Found index url https://www.piwheels.org/simple/ 2025-06-04T04:04:42,293 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/td2/ 2025-06-04T04:04:42,954 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/td2/ 2025-06-04T04:04:44,121 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/td2/ 2025-06-04T04:04:46,292 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/td2/ 2025-06-04T04:04:50,462 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/td2/ 2025-06-04T04:04:50,631 Could not fetch URL https://www.piwheels.org/simple/td2/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/td2/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping 2025-06-04T04:04:50,633 Skipping link: not a file: https://www.piwheels.org/simple/td2/ 2025-06-04T04:04:50,634 Skipping link: not a file: https://pypi.org/simple/td2/ 2025-06-04T04:04:50,658 Given no hashes to check 1 links for project 'td2': discarding no candidates 2025-06-04T04:04:50,660 Collecting td2==1.0.1 2025-06-04T04:04:50,663 Created temporary directory: /tmp/pip-unpack-ufvohxu3 2025-06-04T04:04:50,983 Downloading td2-1.0.1.tar.gz (38 kB) 2025-06-04T04:04:51,141 Added td2==1.0.1 from https://files.pythonhosted.org/packages/27/76/0de889e7ac948b0a6c8de999fac74484afebb986c22a31f1541ed61cf3a9/td2-1.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-jarum9l9' 2025-06-04T04:04:51,143 Running setup.py (path:/tmp/pip-wheel-won37p03/td2_de23590805ba4a26a79d18cd121d9aea/setup.py) egg_info for package td2 2025-06-04T04:04:51,144 Created temporary directory: /tmp/pip-pip-egg-info-osizo9xh 2025-06-04T04:04:51,145 Preparing metadata (setup.py): started 2025-06-04T04:04:51,146 Running command python setup.py egg_info 2025-06-04T04:04:51,985 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-06-04T04:04:51,985 !! 2025-06-04T04:04:51,987 ******************************************************************************** 2025-06-04T04:04:51,987 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-06-04T04:04:51,988 License :: OSI Approved :: MIT License 2025-06-04T04:04:51,989 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-04T04:04:51,990 ******************************************************************************** 2025-06-04T04:04:51,991 !! 2025-06-04T04:04:51,991 self._finalize_license_expression() 2025-06-04T04:04:52,014 running egg_info 2025-06-04T04:04:52,042 creating /tmp/pip-pip-egg-info-osizo9xh/TD2.egg-info 2025-06-04T04:04:52,043 writing /tmp/pip-pip-egg-info-osizo9xh/TD2.egg-info/PKG-INFO 2025-06-04T04:04:52,048 writing dependency_links to /tmp/pip-pip-egg-info-osizo9xh/TD2.egg-info/dependency_links.txt 2025-06-04T04:04:52,050 writing entry points to /tmp/pip-pip-egg-info-osizo9xh/TD2.egg-info/entry_points.txt 2025-06-04T04:04:52,052 writing requirements to /tmp/pip-pip-egg-info-osizo9xh/TD2.egg-info/requires.txt 2025-06-04T04:04:52,053 writing top-level names to /tmp/pip-pip-egg-info-osizo9xh/TD2.egg-info/top_level.txt 2025-06-04T04:04:52,055 writing manifest file '/tmp/pip-pip-egg-info-osizo9xh/TD2.egg-info/SOURCES.txt' 2025-06-04T04:04:52,162 reading manifest file '/tmp/pip-pip-egg-info-osizo9xh/TD2.egg-info/SOURCES.txt' 2025-06-04T04:04:52,163 reading manifest template 'MANIFEST.in' 2025-06-04T04:04:52,164 warning: no files found matching 'tables/table_*.json' 2025-06-04T04:04:52,165 adding license file 'LICENSE.txt' 2025-06-04T04:04:52,169 writing manifest file '/tmp/pip-pip-egg-info-osizo9xh/TD2.egg-info/SOURCES.txt' 2025-06-04T04:04:52,274 Preparing metadata (setup.py): finished with status 'done' 2025-06-04T04:04:52,278 Source in /tmp/pip-wheel-won37p03/td2_de23590805ba4a26a79d18cd121d9aea has version 1.0.1, which satisfies requirement td2==1.0.1 from https://files.pythonhosted.org/packages/27/76/0de889e7ac948b0a6c8de999fac74484afebb986c22a31f1541ed61cf3a9/td2-1.0.1.tar.gz 2025-06-04T04:04:52,279 Removed td2==1.0.1 from https://files.pythonhosted.org/packages/27/76/0de889e7ac948b0a6c8de999fac74484afebb986c22a31f1541ed61cf3a9/td2-1.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-jarum9l9' 2025-06-04T04:04:52,288 Created temporary directory: /tmp/pip-unpack-k9kwn0lz 2025-06-04T04:04:52,289 Created temporary directory: /tmp/pip-unpack-mtojui9n 2025-06-04T04:04:52,290 Building wheels for collected packages: td2 2025-06-04T04:04:52,295 Created temporary directory: /tmp/pip-wheel-mc389cax 2025-06-04T04:04:52,296 DEPRECATION: Building 'td2' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'td2'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-06-04T04:04:52,297 Building wheel for td2 (setup.py): started 2025-06-04T04:04:52,299 Destination directory: /tmp/pip-wheel-mc389cax 2025-06-04T04:04:52,299 Running command python setup.py bdist_wheel 2025-06-04T04:04:53,143 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-06-04T04:04:53,143 !! 2025-06-04T04:04:53,144 ******************************************************************************** 2025-06-04T04:04:53,145 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-06-04T04:04:53,147 License :: OSI Approved :: MIT License 2025-06-04T04:04:53,148 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-04T04:04:53,148 ******************************************************************************** 2025-06-04T04:04:53,150 !! 2025-06-04T04:04:53,150 self._finalize_license_expression() 2025-06-04T04:04:53,151 running bdist_wheel 2025-06-04T04:04:53,283 running build 2025-06-04T04:04:53,284 running build_py 2025-06-04T04:04:53,316 creating build/lib/tests 2025-06-04T04:04:53,318 copying tests/test_find_orfs_real.py -> build/lib/tests 2025-06-04T04:04:53,320 copying tests/__init__.py -> build/lib/tests 2025-06-04T04:04:53,322 copying tests/visualize_mane_composition.py -> build/lib/tests 2025-06-04T04:04:53,324 copying tests/ambiguous_codon_test.py -> build/lib/tests 2025-06-04T04:04:53,326 copying tests/test_reverse_complement.py -> build/lib/tests 2025-06-04T04:04:53,328 copying tests/test_translate.py -> build/lib/tests 2025-06-04T04:04:53,330 copying tests/visualize_chess.py -> build/lib/tests 2025-06-04T04:04:53,332 copying tests/visualize_benchmark.py -> build/lib/tests 2025-06-04T04:04:53,334 copying tests/test_find_orfs.py -> build/lib/tests 2025-06-04T04:04:53,336 copying tests/compare_peps.py -> build/lib/tests 2025-06-04T04:04:53,339 copying tests/longorfs_low_memory.py -> build/lib/tests 2025-06-04T04:04:53,341 copying tests/partition_mane.py -> build/lib/tests 2025-06-04T04:04:53,344 creating build/lib/TD2 2025-06-04T04:04:53,345 copying TD2/translator.py -> build/lib/TD2 2025-06-04T04:04:53,348 copying TD2/__init__.py -> build/lib/TD2 2025-06-04T04:04:53,350 copying TD2/Predict.py -> build/lib/TD2 2025-06-04T04:04:53,353 copying TD2/get_tables.py -> build/lib/TD2 2025-06-04T04:04:53,356 copying TD2/LongOrfs.py -> build/lib/TD2 2025-06-04T04:04:53,359 copying TD2/help.py -> build/lib/TD2 2025-06-04T04:04:53,362 creating build/lib/api 2025-06-04T04:04:53,363 copying api/__init__.py -> build/lib/api 2025-06-04T04:04:53,365 creating build/lib/tests/data 2025-06-04T04:04:53,367 copying tests/data/__init__.py -> build/lib/tests/data 2025-06-04T04:04:53,369 creating build/lib/TD2/tables 2025-06-04T04:04:53,370 copying TD2/tables/__init__.py -> build/lib/TD2/tables 2025-06-04T04:04:53,372 running egg_info 2025-06-04T04:04:53,403 writing TD2.egg-info/PKG-INFO 2025-06-04T04:04:53,408 writing dependency_links to TD2.egg-info/dependency_links.txt 2025-06-04T04:04:53,410 writing entry points to TD2.egg-info/entry_points.txt 2025-06-04T04:04:53,412 writing requirements to TD2.egg-info/requires.txt 2025-06-04T04:04:53,413 writing top-level names to TD2.egg-info/top_level.txt 2025-06-04T04:04:53,460 reading manifest file 'TD2.egg-info/SOURCES.txt' 2025-06-04T04:04:53,465 reading manifest template 'MANIFEST.in' 2025-06-04T04:04:53,466 warning: no files found matching 'tables/table_*.json' 2025-06-04T04:04:53,466 adding license file 'LICENSE.txt' 2025-06-04T04:04:53,471 writing manifest file 'TD2.egg-info/SOURCES.txt' 2025-06-04T04:04:53,486 copying TD2/tables/table_1.json -> build/lib/TD2/tables 2025-06-04T04:04:53,488 copying TD2/tables/table_2.json -> build/lib/TD2/tables 2025-06-04T04:04:53,491 copying TD2/tables/table_3.json -> build/lib/TD2/tables 2025-06-04T04:04:53,493 copying TD2/tables/table_4.json -> build/lib/TD2/tables 2025-06-04T04:04:53,495 copying TD2/tables/table_5.json -> build/lib/TD2/tables 2025-06-04T04:04:53,497 copying TD2/tables/table_6.json -> build/lib/TD2/tables 2025-06-04T04:04:53,500 copying TD2/tables/table_9.json -> build/lib/TD2/tables 2025-06-04T04:04:53,503 copying TD2/tables/table_10.json -> build/lib/TD2/tables 2025-06-04T04:04:53,505 copying TD2/tables/table_11.json -> build/lib/TD2/tables 2025-06-04T04:04:53,508 copying TD2/tables/table_12.json -> build/lib/TD2/tables 2025-06-04T04:04:53,510 copying TD2/tables/table_13.json -> build/lib/TD2/tables 2025-06-04T04:04:53,512 copying TD2/tables/table_14.json -> build/lib/TD2/tables 2025-06-04T04:04:53,515 copying TD2/tables/table_15.json -> build/lib/TD2/tables 2025-06-04T04:04:53,518 copying TD2/tables/table_16.json -> build/lib/TD2/tables 2025-06-04T04:04:53,521 copying TD2/tables/table_21.json -> build/lib/TD2/tables 2025-06-04T04:04:53,523 copying TD2/tables/table_22.json -> build/lib/TD2/tables 2025-06-04T04:04:53,526 copying TD2/tables/table_23.json -> build/lib/TD2/tables 2025-06-04T04:04:53,528 copying TD2/tables/table_24.json -> build/lib/TD2/tables 2025-06-04T04:04:53,530 copying TD2/tables/table_25.json -> build/lib/TD2/tables 2025-06-04T04:04:53,533 copying TD2/tables/table_26.json -> build/lib/TD2/tables 2025-06-04T04:04:53,535 copying TD2/tables/table_27.json -> build/lib/TD2/tables 2025-06-04T04:04:53,538 copying TD2/tables/table_28.json -> build/lib/TD2/tables 2025-06-04T04:04:53,540 copying TD2/tables/table_29.json -> build/lib/TD2/tables 2025-06-04T04:04:53,543 copying TD2/tables/table_30.json -> build/lib/TD2/tables 2025-06-04T04:04:53,545 copying TD2/tables/table_31.json -> build/lib/TD2/tables 2025-06-04T04:04:53,548 copying TD2/tables/table_33.json -> build/lib/TD2/tables 2025-06-04T04:04:53,594 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-06-04T04:04:53,595 !! 2025-06-04T04:04:53,596 ******************************************************************************** 2025-06-04T04:04:53,596 Please avoid running ``setup.py`` directly. 2025-06-04T04:04:53,597 Instead, use pypa/build, pypa/installer or other 2025-06-04T04:04:53,597 standards-based tools. 2025-06-04T04:04:53,599 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-06-04T04:04:53,599 or your builds will no longer be supported. 2025-06-04T04:04:53,600 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-06-04T04:04:53,601 ******************************************************************************** 2025-06-04T04:04:53,602 !! 2025-06-04T04:04:53,602 self.initialize_options() 2025-06-04T04:04:53,623 installing to build/bdist.linux-armv7l/wheel 2025-06-04T04:04:53,623 running install 2025-06-04T04:04:53,648 running install_lib 2025-06-04T04:04:53,675 creating build/bdist.linux-armv7l/wheel 2025-06-04T04:04:53,677 creating build/bdist.linux-armv7l/wheel/tests 2025-06-04T04:04:53,678 copying build/lib/tests/test_find_orfs_real.py -> build/bdist.linux-armv7l/wheel/./tests 2025-06-04T04:04:53,680 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./tests 2025-06-04T04:04:53,682 copying build/lib/tests/visualize_mane_composition.py -> build/bdist.linux-armv7l/wheel/./tests 2025-06-04T04:04:53,684 copying build/lib/tests/ambiguous_codon_test.py -> build/bdist.linux-armv7l/wheel/./tests 2025-06-04T04:04:53,686 copying build/lib/tests/test_reverse_complement.py -> build/bdist.linux-armv7l/wheel/./tests 2025-06-04T04:04:53,688 copying build/lib/tests/test_translate.py -> build/bdist.linux-armv7l/wheel/./tests 2025-06-04T04:04:53,690 copying build/lib/tests/visualize_chess.py -> build/bdist.linux-armv7l/wheel/./tests 2025-06-04T04:04:53,692 copying build/lib/tests/visualize_benchmark.py -> build/bdist.linux-armv7l/wheel/./tests 2025-06-04T04:04:53,694 copying build/lib/tests/test_find_orfs.py -> build/bdist.linux-armv7l/wheel/./tests 2025-06-04T04:04:53,696 copying build/lib/tests/compare_peps.py -> build/bdist.linux-armv7l/wheel/./tests 2025-06-04T04:04:53,699 copying build/lib/tests/longorfs_low_memory.py -> build/bdist.linux-armv7l/wheel/./tests 2025-06-04T04:04:53,702 copying build/lib/tests/partition_mane.py -> build/bdist.linux-armv7l/wheel/./tests 2025-06-04T04:04:53,704 creating build/bdist.linux-armv7l/wheel/tests/data 2025-06-04T04:04:53,705 copying build/lib/tests/data/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/data 2025-06-04T04:04:53,708 creating build/bdist.linux-armv7l/wheel/TD2 2025-06-04T04:04:53,709 copying build/lib/TD2/translator.py -> build/bdist.linux-armv7l/wheel/./TD2 2025-06-04T04:04:53,712 copying build/lib/TD2/__init__.py -> build/bdist.linux-armv7l/wheel/./TD2 2025-06-04T04:04:53,714 copying build/lib/TD2/Predict.py -> build/bdist.linux-armv7l/wheel/./TD2 2025-06-04T04:04:53,716 copying build/lib/TD2/get_tables.py -> build/bdist.linux-armv7l/wheel/./TD2 2025-06-04T04:04:53,719 copying build/lib/TD2/LongOrfs.py -> build/bdist.linux-armv7l/wheel/./TD2 2025-06-04T04:04:53,722 copying build/lib/TD2/help.py -> build/bdist.linux-armv7l/wheel/./TD2 2025-06-04T04:04:53,725 creating build/bdist.linux-armv7l/wheel/TD2/tables 2025-06-04T04:04:53,726 copying build/lib/TD2/tables/table_15.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-04T04:04:53,729 copying build/lib/TD2/tables/table_3.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-04T04:04:53,731 copying build/lib/TD2/tables/table_14.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-04T04:04:53,733 copying build/lib/TD2/tables/table_31.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-04T04:04:53,735 copying build/lib/TD2/tables/__init__.py -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-04T04:04:53,737 copying build/lib/TD2/tables/table_4.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-04T04:04:53,739 copying build/lib/TD2/tables/table_28.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-04T04:04:53,741 copying build/lib/TD2/tables/table_25.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-04T04:04:53,743 copying build/lib/TD2/tables/table_10.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-04T04:04:53,745 copying build/lib/TD2/tables/table_5.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-04T04:04:53,747 copying build/lib/TD2/tables/table_1.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-04T04:04:53,749 copying build/lib/TD2/tables/table_13.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-04T04:04:53,752 copying build/lib/TD2/tables/table_16.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-04T04:04:53,754 copying build/lib/TD2/tables/table_6.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-04T04:04:53,756 copying build/lib/TD2/tables/table_22.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-04T04:04:53,758 copying build/lib/TD2/tables/table_9.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-04T04:04:53,760 copying build/lib/TD2/tables/table_23.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-04T04:04:53,763 copying build/lib/TD2/tables/table_30.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-04T04:04:53,765 copying build/lib/TD2/tables/table_33.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-04T04:04:53,767 copying build/lib/TD2/tables/table_24.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-04T04:04:53,769 copying build/lib/TD2/tables/table_27.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-04T04:04:53,771 copying build/lib/TD2/tables/table_12.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-04T04:04:53,774 copying build/lib/TD2/tables/table_21.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-04T04:04:53,776 copying build/lib/TD2/tables/table_29.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-04T04:04:53,778 copying build/lib/TD2/tables/table_26.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-04T04:04:53,781 copying build/lib/TD2/tables/table_11.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-04T04:04:53,783 copying build/lib/TD2/tables/table_2.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-04T04:04:53,786 creating build/bdist.linux-armv7l/wheel/api 2025-06-04T04:04:53,787 copying build/lib/api/__init__.py -> build/bdist.linux-armv7l/wheel/./api 2025-06-04T04:04:53,789 running install_egg_info 2025-06-04T04:04:53,829 Copying TD2.egg-info to build/bdist.linux-armv7l/wheel/./TD2-1.0.1-py3.11.egg-info 2025-06-04T04:04:53,840 running install_scripts 2025-06-04T04:04:53,855 creating build/bdist.linux-armv7l/wheel/td2-1.0.1.dist-info/WHEEL 2025-06-04T04:04:53,858 creating '/tmp/pip-wheel-mc389cax/td2-1.0.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-06-04T04:04:53,863 adding 'TD2/LongOrfs.py' 2025-06-04T04:04:53,868 adding 'TD2/Predict.py' 2025-06-04T04:04:53,870 adding 'TD2/__init__.py' 2025-06-04T04:04:53,872 adding 'TD2/get_tables.py' 2025-06-04T04:04:53,874 adding 'TD2/help.py' 2025-06-04T04:04:53,876 adding 'TD2/translator.py' 2025-06-04T04:04:53,878 adding 'TD2/tables/__init__.py' 2025-06-04T04:04:53,879 adding 'TD2/tables/table_1.json' 2025-06-04T04:04:53,881 adding 'TD2/tables/table_10.json' 2025-06-04T04:04:53,882 adding 'TD2/tables/table_11.json' 2025-06-04T04:04:53,883 adding 'TD2/tables/table_12.json' 2025-06-04T04:04:53,885 adding 'TD2/tables/table_13.json' 2025-06-04T04:04:53,886 adding 'TD2/tables/table_14.json' 2025-06-04T04:04:53,888 adding 'TD2/tables/table_15.json' 2025-06-04T04:04:53,889 adding 'TD2/tables/table_16.json' 2025-06-04T04:04:53,891 adding 'TD2/tables/table_2.json' 2025-06-04T04:04:53,892 adding 'TD2/tables/table_21.json' 2025-06-04T04:04:53,894 adding 'TD2/tables/table_22.json' 2025-06-04T04:04:53,896 adding 'TD2/tables/table_23.json' 2025-06-04T04:04:53,897 adding 'TD2/tables/table_24.json' 2025-06-04T04:04:53,899 adding 'TD2/tables/table_25.json' 2025-06-04T04:04:53,900 adding 'TD2/tables/table_26.json' 2025-06-04T04:04:53,901 adding 'TD2/tables/table_27.json' 2025-06-04T04:04:53,903 adding 'TD2/tables/table_28.json' 2025-06-04T04:04:53,904 adding 'TD2/tables/table_29.json' 2025-06-04T04:04:53,906 adding 'TD2/tables/table_3.json' 2025-06-04T04:04:53,907 adding 'TD2/tables/table_30.json' 2025-06-04T04:04:53,909 adding 'TD2/tables/table_31.json' 2025-06-04T04:04:53,910 adding 'TD2/tables/table_33.json' 2025-06-04T04:04:53,912 adding 'TD2/tables/table_4.json' 2025-06-04T04:04:53,913 adding 'TD2/tables/table_5.json' 2025-06-04T04:04:53,915 adding 'TD2/tables/table_6.json' 2025-06-04T04:04:53,916 adding 'TD2/tables/table_9.json' 2025-06-04T04:04:53,918 adding 'api/__init__.py' 2025-06-04T04:04:53,921 adding 'td2-1.0.1.dist-info/licenses/LICENSE.txt' 2025-06-04T04:04:53,923 adding 'tests/__init__.py' 2025-06-04T04:04:53,924 adding 'tests/ambiguous_codon_test.py' 2025-06-04T04:04:53,927 adding 'tests/compare_peps.py' 2025-06-04T04:04:53,930 adding 'tests/longorfs_low_memory.py' 2025-06-04T04:04:53,931 adding 'tests/partition_mane.py' 2025-06-04T04:04:53,933 adding 'tests/test_find_orfs.py' 2025-06-04T04:04:53,935 adding 'tests/test_find_orfs_real.py' 2025-06-04T04:04:53,937 adding 'tests/test_reverse_complement.py' 2025-06-04T04:04:53,938 adding 'tests/test_translate.py' 2025-06-04T04:04:53,939 adding 'tests/visualize_benchmark.py' 2025-06-04T04:04:53,941 adding 'tests/visualize_chess.py' 2025-06-04T04:04:53,942 adding 'tests/visualize_mane_composition.py' 2025-06-04T04:04:53,944 adding 'tests/data/__init__.py' 2025-06-04T04:04:53,945 adding 'td2-1.0.1.dist-info/METADATA' 2025-06-04T04:04:53,946 adding 'td2-1.0.1.dist-info/WHEEL' 2025-06-04T04:04:53,947 adding 'td2-1.0.1.dist-info/entry_points.txt' 2025-06-04T04:04:53,948 adding 'td2-1.0.1.dist-info/top_level.txt' 2025-06-04T04:04:53,950 adding 'td2-1.0.1.dist-info/RECORD' 2025-06-04T04:04:53,952 removing build/bdist.linux-armv7l/wheel 2025-06-04T04:04:54,076 Building wheel for td2 (setup.py): finished with status 'done' 2025-06-04T04:04:54,079 Created wheel for td2: filename=td2-1.0.1-py3-none-any.whl size=54928 sha256=8c2dbb85f1878bd9ee408cf25a898ede78c5fd23f195feebb2dfe45f6c4d2f71 2025-06-04T04:04:54,080 Stored in directory: /tmp/pip-ephem-wheel-cache-l5g6asec/wheels/33/c5/ca/fcb367076f06ea8004e72fa48f573785afe33d091e6102e328 2025-06-04T04:04:54,094 Successfully built td2 2025-06-04T04:04:54,100 Removed build tracker: '/tmp/pip-build-tracker-jarum9l9'