2025-06-05T03:52:55,027 Created temporary directory: /tmp/pip-build-tracker-u98vr5r8 2025-06-05T03:52:55,030 Initialized build tracking at /tmp/pip-build-tracker-u98vr5r8 2025-06-05T03:52:55,031 Created build tracker: /tmp/pip-build-tracker-u98vr5r8 2025-06-05T03:52:55,032 Entered build tracker: /tmp/pip-build-tracker-u98vr5r8 2025-06-05T03:52:55,034 Created temporary directory: /tmp/pip-wheel-pfj6q9sy 2025-06-05T03:52:55,039 Created temporary directory: /tmp/pip-ephem-wheel-cache-6q90eh9h 2025-06-05T03:52:55,087 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-06-05T03:52:55,090 2 location(s) to search for versions of stcat: 2025-06-05T03:52:55,090 * https://pypi.org/simple/stcat/ 2025-06-05T03:52:55,090 * https://www.piwheels.org/simple/stcat/ 2025-06-05T03:52:55,090 Fetching project page and analyzing links: https://pypi.org/simple/stcat/ 2025-06-05T03:52:55,091 Getting page https://pypi.org/simple/stcat/ 2025-06-05T03:52:55,093 Found index url https://pypi.org/simple/ 2025-06-05T03:52:55,320 Fetched page https://pypi.org/simple/stcat/ as application/vnd.pypi.simple.v1+json 2025-06-05T03:52:55,325 Skipping link: No binaries permitted for stcat: https://files.pythonhosted.org/packages/dd/d9/7509763cc9a3235091c79b0b4a3a9a415f7b643a68593550ab533d06677d/STCAT-0.2-py3-none-any.whl (from https://pypi.org/simple/stcat/) (requires-python:>=3.8) 2025-06-05T03:52:55,326 Found link https://files.pythonhosted.org/packages/54/ff/46d805ee24659e6c5896441d6a58a39f48af44e54ab5496acf66a564fbc2/STCAT-0.2.tar.gz (from https://pypi.org/simple/stcat/) (requires-python:>=3.8), version: 0.2 2025-06-05T03:52:55,327 Skipping link: No binaries permitted for stcat: https://files.pythonhosted.org/packages/a1/c2/622b9f058b24687ff867af676fe1a228e5ce888299d80fb946f23947d90b/STCAT-0.3-py3-none-any.whl (from https://pypi.org/simple/stcat/) (requires-python:>=3.8) 2025-06-05T03:52:55,327 Found link https://files.pythonhosted.org/packages/0a/80/6f95d103fabcc905d1f3752b8df72f6f94bbee03d856fea3b87d6734399e/STCAT-0.3.tar.gz (from https://pypi.org/simple/stcat/) (requires-python:>=3.8), version: 0.3 2025-06-05T03:52:55,328 Skipping link: No binaries permitted for stcat: https://files.pythonhosted.org/packages/00/9f/c43fc909bbaa04cc23ab22dce4347ba97041c75509b1ad05cb32208af304/STCAT-0.3.1-py3-none-any.whl (from https://pypi.org/simple/stcat/) (requires-python:>=3.8) 2025-06-05T03:52:55,329 Found link https://files.pythonhosted.org/packages/3d/85/26de4a35d00621ab453aec285423cd2d8dcd8894aed6c104efd051548eb2/STCAT-0.3.1.tar.gz (from https://pypi.org/simple/stcat/) (requires-python:>=3.8), version: 0.3.1 2025-06-05T03:52:55,330 Skipping link: No binaries permitted for stcat: https://files.pythonhosted.org/packages/82/30/81637812215bbf231cfcde640e3e9b6d9c2f03ca047ee35e4da2f00451ef/STCAT-0.4-py3-none-any.whl (from https://pypi.org/simple/stcat/) (requires-python:>=3.8) 2025-06-05T03:52:55,330 Found link https://files.pythonhosted.org/packages/b1/2c/d5c45eed6a58face4a30c3d86a73f9ecf36428a3c1dba4e8261ee8b49491/STCAT-0.4.tar.gz (from https://pypi.org/simple/stcat/) (requires-python:>=3.8), version: 0.4 2025-06-05T03:52:55,331 Skipping link: No binaries permitted for stcat: https://files.pythonhosted.org/packages/c0/e2/4eb4ba85784764e9f06ff3e3ea3984483797409d9dbb78bac2bc72aefcda/STCAT-0.5-py3-none-any.whl (from https://pypi.org/simple/stcat/) (requires-python:>=3.8) 2025-06-05T03:52:55,332 Found link https://files.pythonhosted.org/packages/63/4b/4c69ba9d101bddf6c744e6b95d7dd1baf70bfdca8f35d5d3d699286c9818/STCAT-0.5.tar.gz (from https://pypi.org/simple/stcat/) (requires-python:>=3.8), version: 0.5 2025-06-05T03:52:55,332 Skipping link: No binaries permitted for stcat: https://files.pythonhosted.org/packages/e7/b2/b1b8e75f6dcec052813774bb57b7acb1a6c936c7d63fcb679479a18316be/STCAT-0.6-py3-none-any.whl (from https://pypi.org/simple/stcat/) (requires-python:>=3.8) 2025-06-05T03:52:55,333 Found link https://files.pythonhosted.org/packages/7d/7b/87a75714b463c728a46c3327292c2d1d015c9d5bf420211e3ecffd2181fd/STCAT-0.6.tar.gz (from https://pypi.org/simple/stcat/) (requires-python:>=3.8), version: 0.6 2025-06-05T03:52:55,334 Skipping link: No binaries permitted for stcat: https://files.pythonhosted.org/packages/bb/04/4e60aa6ddde3e86b780dd955f7980b3928714e59fa1190456067fac03224/STCAT-0.6.1-py3-none-any.whl (from https://pypi.org/simple/stcat/) (requires-python:>=3.8) 2025-06-05T03:52:55,335 Found link https://files.pythonhosted.org/packages/4d/7c/e989750544d252dd9381db0fe51911b5087ed59d46e531feb3da93bc9a53/STCAT-0.6.1.tar.gz (from https://pypi.org/simple/stcat/) (requires-python:>=3.8), version: 0.6.1 2025-06-05T03:52:55,335 Skipping link: No binaries permitted for stcat: https://files.pythonhosted.org/packages/f7/aa/aec1a2924c470e9e7ea6925e25a58032f71bbbb26e41af31d26aa894aa12/STCAT-0.7-py3-none-any.whl (from https://pypi.org/simple/stcat/) (requires-python:>=3.8) 2025-06-05T03:52:55,336 Found link https://files.pythonhosted.org/packages/12/f7/f2b07b434451163a1761aa8a8ea1843847cff979143f65727fffe7df88ea/STCAT-0.7.tar.gz (from https://pypi.org/simple/stcat/) (requires-python:>=3.8), version: 0.7 2025-06-05T03:52:55,337 Skipping link: No binaries permitted for stcat: https://files.pythonhosted.org/packages/b4/f8/c7a6e257ae7e350d4cccd0742df06b8508330afaf80ae61c046bcdb8580e/STCAT-1.0.0-py3-none-any.whl (from https://pypi.org/simple/stcat/) (requires-python:>=3.8) 2025-06-05T03:52:55,337 Found link https://files.pythonhosted.org/packages/a7/f9/6c8c5a620343cbb93cfc959fdb0e0fd977c4c19d938527f0c4bd8bae7f7d/STCAT-1.0.0.tar.gz (from https://pypi.org/simple/stcat/) (requires-python:>=3.8), version: 1.0.0 2025-06-05T03:52:55,338 Skipping link: No binaries permitted for stcat: https://files.pythonhosted.org/packages/e8/20/2df82c8d18faa9283b23a436a5f56a3d95d1cff449e9e9770f081a255cbb/STCAT-1.0.1-py3-none-any.whl (from https://pypi.org/simple/stcat/) (requires-python:>=3.8) 2025-06-05T03:52:55,339 Found link https://files.pythonhosted.org/packages/db/a7/fb60c71074ce28bccf7f7317ec6b4f29d1daa74a5fcca5734ce3cff2446e/STCAT-1.0.1.tar.gz (from https://pypi.org/simple/stcat/) (requires-python:>=3.8), version: 1.0.1 2025-06-05T03:52:55,340 Skipping link: No binaries permitted for stcat: https://files.pythonhosted.org/packages/bf/95/dcd91590a561bdccad8c3b5e7df673d3a305cd1e020ba834a66aa1fd3c95/STCAT-1.0.2-py3-none-any.whl (from https://pypi.org/simple/stcat/) (requires-python:>=3.8) 2025-06-05T03:52:55,341 Found link https://files.pythonhosted.org/packages/e7/40/b14f2411dfcc79e16fcd61f73d9e08b931fc2887adec9e4ba6a896eae2cc/STCAT-1.0.2.tar.gz (from https://pypi.org/simple/stcat/) (requires-python:>=3.8), version: 1.0.2 2025-06-05T03:52:55,341 Skipping link: No binaries permitted for stcat: https://files.pythonhosted.org/packages/12/3b/e3f7371b338c80b17c5b182d2fc69815ea0b219cd45b1723ac7a94be6f5e/STCAT-1.0.3-py3-none-any.whl (from https://pypi.org/simple/stcat/) (requires-python:>=3.8) 2025-06-05T03:52:55,342 Found link https://files.pythonhosted.org/packages/ac/b9/0f5f9d344c3db0f862b2985b0171a72367c476cba35eaf352cc68e050a76/STCAT-1.0.3.tar.gz (from https://pypi.org/simple/stcat/) (requires-python:>=3.8), version: 1.0.3 2025-06-05T03:52:55,343 Skipping link: No binaries permitted for stcat: https://files.pythonhosted.org/packages/a4/1e/6027af78c64685cfa0f2f3b8bce29cb04774c7c45e5f4be1c7573301351e/STCAT-1.0.4-py3-none-any.whl (from https://pypi.org/simple/stcat/) (requires-python:>=3.8) 2025-06-05T03:52:55,344 Found link https://files.pythonhosted.org/packages/2e/fd/ac645c0dc80df7618f05f98cdac3180608b9b04e4c42d3142e7dc86011a5/STCAT-1.0.4.tar.gz (from https://pypi.org/simple/stcat/) (requires-python:>=3.8), version: 1.0.4 2025-06-05T03:52:55,344 Skipping link: No binaries permitted for stcat: https://files.pythonhosted.org/packages/9e/de/1a6e42a8cb9afbd2755fe38c9b2f2d0d2677757a0c3890083325b0bba4e7/STCAT-1.0.5-py3-none-any.whl (from https://pypi.org/simple/stcat/) (requires-python:>=3.8) 2025-06-05T03:52:55,345 Found link https://files.pythonhosted.org/packages/35/4b/95a683453bc5fc2da98f62893a2007234ae6cf5c1763dbf41204144c42f8/STCAT-1.0.5.tar.gz (from https://pypi.org/simple/stcat/) (requires-python:>=3.8), version: 1.0.5 2025-06-05T03:52:55,346 Skipping link: No binaries permitted for stcat: https://files.pythonhosted.org/packages/8d/a9/9cfb49df53be97c2f1e0e1a5fb4feb6a8218815496574d89655acf0830d2/STCAT-1.0.6-py3-none-any.whl (from https://pypi.org/simple/stcat/) (requires-python:>=3.8) 2025-06-05T03:52:55,347 Found link https://files.pythonhosted.org/packages/df/8c/cbc5d5b507c4d5c68f7a0ca5f70c234238f0ee1e1bdfb529255f60e8ce69/stcat-1.0.6.tar.gz (from https://pypi.org/simple/stcat/) (requires-python:>=3.8), version: 1.0.6 2025-06-05T03:52:55,348 Skipping link: No binaries permitted for stcat: https://files.pythonhosted.org/packages/5e/f7/f151c6d5015d6201c2d3bc444c7e3a9dd3885f25c7d48e74d8604a781f93/STCAT-1.0.7-py3-none-any.whl (from https://pypi.org/simple/stcat/) (requires-python:>=3.8) 2025-06-05T03:52:55,348 Found link https://files.pythonhosted.org/packages/21/ca/3237053f143d29487a1049800b0408532433ca0933edd0c90b7185498a37/stcat-1.0.7.tar.gz (from https://pypi.org/simple/stcat/) (requires-python:>=3.8), version: 1.0.7 2025-06-05T03:52:55,349 Skipping link: No binaries permitted for stcat: https://files.pythonhosted.org/packages/b0/fd/3c56d27f8ca32ae57aaebafb3946c294793804fa81835a7343c8d89205c9/STCAT-1.0.8-py3-none-any.whl (from https://pypi.org/simple/stcat/) (requires-python:>=3.8) 2025-06-05T03:52:55,349 Found link https://files.pythonhosted.org/packages/d8/1b/8fbb368b3d3ef3312cbce83bd18699a789c83f02d676a97ebb8d4c267fc4/STCAT-1.0.8.tar.gz (from https://pypi.org/simple/stcat/) (requires-python:>=3.8), version: 1.0.8 2025-06-05T03:52:55,350 Fetching project page and analyzing links: https://www.piwheels.org/simple/stcat/ 2025-06-05T03:52:55,351 Getting page https://www.piwheels.org/simple/stcat/ 2025-06-05T03:52:55,353 Found index url https://www.piwheels.org/simple/ 2025-06-05T03:52:55,506 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/stcat/ 2025-06-05T03:52:56,166 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/stcat/ 2025-06-05T03:52:57,380 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/stcat/ 2025-06-05T03:52:59,601 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/stcat/ 2025-06-05T03:53:03,799 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/stcat/ 2025-06-05T03:53:03,992 Could not fetch URL https://www.piwheels.org/simple/stcat/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/stcat/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping 2025-06-05T03:53:03,993 Skipping link: not a file: https://www.piwheels.org/simple/stcat/ 2025-06-05T03:53:03,994 Skipping link: not a file: https://pypi.org/simple/stcat/ 2025-06-05T03:53:04,013 Given no hashes to check 1 links for project 'stcat': discarding no candidates 2025-06-05T03:53:04,015 Collecting stcat==1.0.8 2025-06-05T03:53:04,017 Created temporary directory: /tmp/pip-unpack-vuex3qrx 2025-06-05T03:53:04,249 Downloading STCAT-1.0.8.tar.gz (1.6 MB) 2025-06-05T03:53:04,607 Added stcat==1.0.8 from https://files.pythonhosted.org/packages/d8/1b/8fbb368b3d3ef3312cbce83bd18699a789c83f02d676a97ebb8d4c267fc4/STCAT-1.0.8.tar.gz to build tracker '/tmp/pip-build-tracker-u98vr5r8' 2025-06-05T03:53:04,608 Running setup.py (path:/tmp/pip-wheel-pfj6q9sy/stcat_be428ead141e44c1b8a1e6b495b90195/setup.py) egg_info for package stcat 2025-06-05T03:53:04,609 Created temporary directory: /tmp/pip-pip-egg-info-o9j215cb 2025-06-05T03:53:04,610 Preparing metadata (setup.py): started 2025-06-05T03:53:04,611 Running command python setup.py egg_info 2025-06-05T03:53:05,458 running egg_info 2025-06-05T03:53:05,485 creating /tmp/pip-pip-egg-info-o9j215cb/STCAT.egg-info 2025-06-05T03:53:05,486 writing /tmp/pip-pip-egg-info-o9j215cb/STCAT.egg-info/PKG-INFO 2025-06-05T03:53:05,490 writing dependency_links to /tmp/pip-pip-egg-info-o9j215cb/STCAT.egg-info/dependency_links.txt 2025-06-05T03:53:05,493 writing requirements to /tmp/pip-pip-egg-info-o9j215cb/STCAT.egg-info/requires.txt 2025-06-05T03:53:05,494 writing top-level names to /tmp/pip-pip-egg-info-o9j215cb/STCAT.egg-info/top_level.txt 2025-06-05T03:53:05,495 writing manifest file '/tmp/pip-pip-egg-info-o9j215cb/STCAT.egg-info/SOURCES.txt' 2025-06-05T03:53:05,578 reading manifest file '/tmp/pip-pip-egg-info-o9j215cb/STCAT.egg-info/SOURCES.txt' 2025-06-05T03:53:05,579 reading manifest template 'MANIFEST.in' 2025-06-05T03:53:05,585 writing manifest file '/tmp/pip-pip-egg-info-o9j215cb/STCAT.egg-info/SOURCES.txt' 2025-06-05T03:53:05,690 Preparing metadata (setup.py): finished with status 'done' 2025-06-05T03:53:05,695 Source in /tmp/pip-wheel-pfj6q9sy/stcat_be428ead141e44c1b8a1e6b495b90195 has version 1.0.8, which satisfies requirement stcat==1.0.8 from https://files.pythonhosted.org/packages/d8/1b/8fbb368b3d3ef3312cbce83bd18699a789c83f02d676a97ebb8d4c267fc4/STCAT-1.0.8.tar.gz 2025-06-05T03:53:05,696 Removed stcat==1.0.8 from https://files.pythonhosted.org/packages/d8/1b/8fbb368b3d3ef3312cbce83bd18699a789c83f02d676a97ebb8d4c267fc4/STCAT-1.0.8.tar.gz from build tracker '/tmp/pip-build-tracker-u98vr5r8' 2025-06-05T03:53:05,713 Created temporary directory: /tmp/pip-unpack-5z3zruj1 2025-06-05T03:53:05,714 Created temporary directory: /tmp/pip-unpack-ei4xikb2 2025-06-05T03:53:05,715 Building wheels for collected packages: stcat 2025-06-05T03:53:05,719 Created temporary directory: /tmp/pip-wheel-_ue9_zec 2025-06-05T03:53:05,719 DEPRECATION: Building 'stcat' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'stcat'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-06-05T03:53:05,721 Building wheel for stcat (setup.py): started 2025-06-05T03:53:05,722 Destination directory: /tmp/pip-wheel-_ue9_zec 2025-06-05T03:53:05,722 Running command python setup.py bdist_wheel 2025-06-05T03:53:06,549 running bdist_wheel 2025-06-05T03:53:06,677 running build 2025-06-05T03:53:06,678 running build_py 2025-06-05T03:53:06,707 creating build/lib/STCAT 2025-06-05T03:53:06,709 copying STCAT/STCAT.py -> build/lib/STCAT 2025-06-05T03:53:06,712 copying STCAT/models.py -> build/lib/STCAT 2025-06-05T03:53:06,714 copying STCAT/__init__.py -> build/lib/STCAT 2025-06-05T03:53:06,716 copying STCAT/annotate.py -> build/lib/STCAT 2025-06-05T03:53:06,719 copying STCAT/classifier.py -> build/lib/STCAT 2025-06-05T03:53:06,722 copying STCAT/logger.py -> build/lib/STCAT 2025-06-05T03:53:06,723 running egg_info 2025-06-05T03:53:06,751 writing STCAT.egg-info/PKG-INFO 2025-06-05T03:53:06,755 writing dependency_links to STCAT.egg-info/dependency_links.txt 2025-06-05T03:53:06,757 writing requirements to STCAT.egg-info/requires.txt 2025-06-05T03:53:06,759 writing top-level names to STCAT.egg-info/top_level.txt 2025-06-05T03:53:06,788 reading manifest file 'STCAT.egg-info/SOURCES.txt' 2025-06-05T03:53:06,791 reading manifest template 'MANIFEST.in' 2025-06-05T03:53:06,796 writing manifest file 'STCAT.egg-info/SOURCES.txt' 2025-06-05T03:53:06,799 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'STCAT.data' is absent from the `packages` configuration. 2025-06-05T03:53:06,799 !! 2025-06-05T03:53:06,800 ******************************************************************************** 2025-06-05T03:53:06,800 ############################ 2025-06-05T03:53:06,801 # Package would be ignored # 2025-06-05T03:53:06,801 ############################ 2025-06-05T03:53:06,802 Python recognizes 'STCAT.data' as an importable package[^1], 2025-06-05T03:53:06,802 but it is absent from setuptools' `packages` configuration. 2025-06-05T03:53:06,803 This leads to an ambiguous overall configuration. If you want to distribute this 2025-06-05T03:53:06,804 package, please make sure that 'STCAT.data' is explicitly added 2025-06-05T03:53:06,804 to the `packages` configuration field. 2025-06-05T03:53:06,805 Alternatively, you can also rely on setuptools' discovery methods 2025-06-05T03:53:06,805 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-06-05T03:53:06,806 instead of `find_packages(...)`/`find:`). 2025-06-05T03:53:06,807 You can read more about "package discovery" on setuptools documentation page: 2025-06-05T03:53:06,818 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-06-05T03:53:06,819 If you don't want 'STCAT.data' to be distributed and are 2025-06-05T03:53:06,820 already explicitly excluding 'STCAT.data' via 2025-06-05T03:53:06,820 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-06-05T03:53:06,820 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-06-05T03:53:06,821 combination with a more fine grained `package-data` configuration. 2025-06-05T03:53:06,823 You can read more about "package data files" on setuptools documentation page: 2025-06-05T03:53:06,828 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-06-05T03:53:06,831 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-06-05T03:53:06,835 even if it does not contain any `.py` files. 2025-06-05T03:53:06,836 On the other hand, currently there is no concept of package data 2025-06-05T03:53:06,837 directory, all directories are treated like packages. 2025-06-05T03:53:06,837 ******************************************************************************** 2025-06-05T03:53:06,838 !! 2025-06-05T03:53:06,839 check.warn(importable) 2025-06-05T03:53:06,839 creating build/lib/STCAT/data 2025-06-05T03:53:06,840 copying STCAT/data/T_cell.pkl -> build/lib/STCAT/data 2025-06-05T03:53:06,840 copying STCAT/data/cd4.pkl -> build/lib/STCAT/data 2025-06-05T03:53:06,841 copying STCAT/data/cd8.pkl -> build/lib/STCAT/data 2025-06-05T03:53:06,842 copying STCAT/data/marker_CD4.txt -> build/lib/STCAT/data 2025-06-05T03:53:06,842 copying STCAT/data/marker_CD8.txt -> build/lib/STCAT/data 2025-06-05T03:53:06,869 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-06-05T03:53:06,869 !! 2025-06-05T03:53:06,871 ******************************************************************************** 2025-06-05T03:53:06,872 Please avoid running ``setup.py`` directly. 2025-06-05T03:53:06,873 Instead, use pypa/build, pypa/installer or other 2025-06-05T03:53:06,874 standards-based tools. 2025-06-05T03:53:06,875 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-06-05T03:53:06,875 or your builds will no longer be supported. 2025-06-05T03:53:06,876 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-06-05T03:53:06,877 ******************************************************************************** 2025-06-05T03:53:06,878 !! 2025-06-05T03:53:06,878 self.initialize_options() 2025-06-05T03:53:06,896 installing to build/bdist.linux-armv7l/wheel 2025-06-05T03:53:06,897 running install 2025-06-05T03:53:06,920 running install_lib 2025-06-05T03:53:06,946 creating build/bdist.linux-armv7l/wheel 2025-06-05T03:53:06,948 creating build/bdist.linux-armv7l/wheel/STCAT 2025-06-05T03:53:06,949 copying build/lib/STCAT/STCAT.py -> build/bdist.linux-armv7l/wheel/./STCAT 2025-06-05T03:53:06,952 copying build/lib/STCAT/models.py -> build/bdist.linux-armv7l/wheel/./STCAT 2025-06-05T03:53:06,954 copying build/lib/STCAT/__init__.py -> build/bdist.linux-armv7l/wheel/./STCAT 2025-06-05T03:53:06,956 copying build/lib/STCAT/annotate.py -> build/bdist.linux-armv7l/wheel/./STCAT 2025-06-05T03:53:06,958 copying build/lib/STCAT/classifier.py -> build/bdist.linux-armv7l/wheel/./STCAT 2025-06-05T03:53:06,961 copying build/lib/STCAT/logger.py -> build/bdist.linux-armv7l/wheel/./STCAT 2025-06-05T03:53:06,963 creating build/bdist.linux-armv7l/wheel/STCAT/data 2025-06-05T03:53:06,964 copying build/lib/STCAT/data/cd8.pkl -> build/bdist.linux-armv7l/wheel/./STCAT/data 2025-06-05T03:53:06,972 copying build/lib/STCAT/data/marker_CD8.txt -> build/bdist.linux-armv7l/wheel/./STCAT/data 2025-06-05T03:53:06,974 copying build/lib/STCAT/data/cd4.pkl -> build/bdist.linux-armv7l/wheel/./STCAT/data 2025-06-05T03:53:06,989 copying build/lib/STCAT/data/T_cell.pkl -> build/bdist.linux-armv7l/wheel/./STCAT/data 2025-06-05T03:53:07,013 copying build/lib/STCAT/data/marker_CD4.txt -> build/bdist.linux-armv7l/wheel/./STCAT/data 2025-06-05T03:53:07,015 running install_egg_info 2025-06-05T03:53:07,049 Copying STCAT.egg-info to build/bdist.linux-armv7l/wheel/./STCAT-1.0.8-py3.11.egg-info 2025-06-05T03:53:07,058 running install_scripts 2025-06-05T03:53:07,067 creating build/bdist.linux-armv7l/wheel/stcat-1.0.8.dist-info/WHEEL 2025-06-05T03:53:07,070 creating '/tmp/pip-wheel-_ue9_zec/stcat-1.0.8-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-06-05T03:53:07,073 adding 'STCAT/STCAT.py' 2025-06-05T03:53:07,074 adding 'STCAT/__init__.py' 2025-06-05T03:53:07,076 adding 'STCAT/annotate.py' 2025-06-05T03:53:07,079 adding 'STCAT/classifier.py' 2025-06-05T03:53:07,081 adding 'STCAT/logger.py' 2025-06-05T03:53:07,082 adding 'STCAT/models.py' 2025-06-05T03:53:07,224 adding 'STCAT/data/T_cell.pkl' 2025-06-05T03:53:07,309 adding 'STCAT/data/cd4.pkl' 2025-06-05T03:53:07,349 adding 'STCAT/data/cd8.pkl' 2025-06-05T03:53:07,352 adding 'STCAT/data/marker_CD4.txt' 2025-06-05T03:53:07,354 adding 'STCAT/data/marker_CD8.txt' 2025-06-05T03:53:07,356 adding 'stcat-1.0.8.dist-info/METADATA' 2025-06-05T03:53:07,357 adding 'stcat-1.0.8.dist-info/WHEEL' 2025-06-05T03:53:07,358 adding 'stcat-1.0.8.dist-info/top_level.txt' 2025-06-05T03:53:07,359 adding 'stcat-1.0.8.dist-info/RECORD' 2025-06-05T03:53:07,382 removing build/bdist.linux-armv7l/wheel 2025-06-05T03:53:07,493 Building wheel for stcat (setup.py): finished with status 'done' 2025-06-05T03:53:07,511 Created wheel for stcat: filename=stcat-1.0.8-py3-none-any.whl size=1644353 sha256=a19fd4ffce8db78d786e917758f75e9cf1a445e814c3501507834e222e051f2d 2025-06-05T03:53:07,513 Stored in directory: /tmp/pip-ephem-wheel-cache-6q90eh9h/wheels/9f/aa/49/0a8c819820e3420d4e17b94cb63e0d35723af97d2c61391509 2025-06-05T03:53:07,524 Successfully built stcat 2025-06-05T03:53:07,576 Removed build tracker: '/tmp/pip-build-tracker-u98vr5r8'