2025-06-05T00:13:58,303 Created temporary directory: /tmp/pip-build-tracker-wuxth6xa
2025-06-05T00:13:58,304 Initialized build tracking at /tmp/pip-build-tracker-wuxth6xa
2025-06-05T00:13:58,305 Created build tracker: /tmp/pip-build-tracker-wuxth6xa
2025-06-05T00:13:58,305 Entered build tracker: /tmp/pip-build-tracker-wuxth6xa
2025-06-05T00:13:58,306 Created temporary directory: /tmp/pip-wheel-vfp5e9eb
2025-06-05T00:13:58,311 Created temporary directory: /tmp/pip-ephem-wheel-cache-nr4_lnfi
2025-06-05T00:13:58,366 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-06-05T00:13:58,368 2 location(s) to search for versions of nextflow:
2025-06-05T00:13:58,368 * https://pypi.org/simple/nextflow/
2025-06-05T00:13:58,368 * https://www.piwheels.org/simple/nextflow/
2025-06-05T00:13:58,369 Fetching project page and analyzing links: https://pypi.org/simple/nextflow/
2025-06-05T00:13:58,370 Getting page https://pypi.org/simple/nextflow/
2025-06-05T00:13:58,372 Found index url https://pypi.org/simple/
2025-06-05T00:13:58,658 Fetched page https://pypi.org/simple/nextflow/ as application/vnd.pypi.simple.v1+json
2025-06-05T00:13:58,667   Found link https://files.pythonhosted.org/packages/d9/3d/162f93ee2c674b19e07782850b8e1044168c3615a9e3e3a9a2d75ad45e8a/nextflow-22.10.1.tar.gz (from https://pypi.org/simple/nextflow/), version: 22.10.1
2025-06-05T00:13:58,669   Found link https://files.pythonhosted.org/packages/0b/00/f6d3c8d84864605147aa79ec17f763fd394f9cfaded672101e3d07bc0345/nextflow-22.10.6.tar.gz (from https://pypi.org/simple/nextflow/), version: 22.10.6
2025-06-05T00:13:58,670   Found link https://files.pythonhosted.org/packages/f5/e8/e0882a1aad0b30b3ac760ae69914ffe986706f12d6539a1c0a08759d0e2b/nextflow-22.10.7.tar.gz (from https://pypi.org/simple/nextflow/), version: 22.10.7
2025-06-05T00:13:58,672   Found link https://files.pythonhosted.org/packages/d5/eb/d7cd6b33724ea6c37f8dfd4ed4354a06ed66e8a87bb6c50cca26afa3d210/nextflow-23.4.1.tar.gz (from https://pypi.org/simple/nextflow/), version: 23.4.1
2025-06-05T00:13:58,674   Found link https://files.pythonhosted.org/packages/77/eb/6f5e7d09188ac1fedc1b20c5bb3c679302cda22398c49682f8f3213565db/nextflow-23.4.2.tar.gz (from https://pypi.org/simple/nextflow/), version: 23.4.2
2025-06-05T00:13:58,674   Found link https://files.pythonhosted.org/packages/37/0f/cd4e2d76402ebd60994753df846a4581fe1cd2c5c8ecfad4a0758328edf9/nextflow-23.4.3.tar.gz (from https://pypi.org/simple/nextflow/), version: 23.4.3
2025-06-05T00:13:58,675   Found link https://files.pythonhosted.org/packages/7f/a1/ef4e714fdc8de1cf27f285565feea47eec4c85b96fc9063a07fe8215ef83/nextflow-23.4.4.tar.gz (from https://pypi.org/simple/nextflow/), version: 23.4.4
2025-06-05T00:13:58,676   Found link https://files.pythonhosted.org/packages/5d/28/eb02b1a65c49e3b2dffd9d42e711e0544ee9db637cd4ca43b0c1a64e0eb4/nextflow-23.10.0.tar.gz (from https://pypi.org/simple/nextflow/), version: 23.10.0
2025-06-05T00:13:58,677   Found link https://files.pythonhosted.org/packages/83/af/626ea17fa51a5397849f286ffb2c88e661e1498078b337287c8deee86ba6/nextflow-23.10.1.tar.gz (from https://pypi.org/simple/nextflow/), version: 23.10.1
2025-06-05T00:13:58,678   Found link https://files.pythonhosted.org/packages/c4/9b/9cfb11bf3e9f51644b177c1ef2c635b11e96aedea5a40fd5839d197de7bd/nextflow-24.4.1.tar.gz (from https://pypi.org/simple/nextflow/), version: 24.4.1
2025-06-05T00:13:58,678   Found link https://files.pythonhosted.org/packages/e3/bd/c2bbb7c09b5c88d1521f40025c5ddec825b5c789f374242afbffba08c84b/nextflow-24.4.2.tar.gz (from https://pypi.org/simple/nextflow/), version: 24.4.2
2025-06-05T00:13:58,679   Found link https://files.pythonhosted.org/packages/5d/f7/65b3d0d6efa2d1dc0a74295b0bafac940349fb553ff77aecc2b19341206c/nextflow-24.4.3.tar.gz (from https://pypi.org/simple/nextflow/), version: 24.4.3
2025-06-05T00:13:58,680   Found link https://files.pythonhosted.org/packages/0e/b6/cecfb82e6f67273377507d12df3bed4ac8ddc31a5761c98ce8ab3edf4454/nextflow-24.4.4.tar.gz (from https://pypi.org/simple/nextflow/), version: 24.4.4
2025-06-05T00:13:58,680   Found link https://files.pythonhosted.org/packages/29/52/547b169dda8bf4f6586ee7c81cb6a3fd74ac87ec0cf7d1f23afb417103b0/nextflow-24.10.0.tar.gz (from https://pypi.org/simple/nextflow/), version: 24.10.0
2025-06-05T00:13:58,681   Found link https://files.pythonhosted.org/packages/bc/d7/bc5630f756cafca449c5417b0eb5f7681240355648ca5921dc58c7e070a8/nextflow-24.10.1.tar.gz (from https://pypi.org/simple/nextflow/), version: 24.10.1
2025-06-05T00:13:58,682   Found link https://files.pythonhosted.org/packages/32/2c/5431a119fc06d69c27010b0ac7d75c876c6e50e62e86df336c499b7a2c42/nextflow-24.10.2.tar.gz (from https://pypi.org/simple/nextflow/), version: 24.10.2
2025-06-05T00:13:58,683   Found link https://files.pythonhosted.org/packages/d8/70/658e28cc6c6d748a6928242c945fff4c67bd899371e7fcf11efe6157dfe5/nextflow-24.10.3.tar.gz (from https://pypi.org/simple/nextflow/), version: 24.10.3
2025-06-05T00:13:58,684   Found link https://files.pythonhosted.org/packages/ad/db/ad2476c9143c0b97433f4a25e131fc688e22937299f2e26d88436b543bdd/nextflow-24.10.4.tar.gz (from https://pypi.org/simple/nextflow/), version: 24.10.4
2025-06-05T00:13:58,684   Found link https://files.pythonhosted.org/packages/9c/e3/198614b09b818bfd34c93c12cc0cf0d64c0564abe782da5926a121a03953/nextflow-24.10.5.tar.gz (from https://pypi.org/simple/nextflow/), version: 24.10.5
2025-06-05T00:13:58,685   Found link https://files.pythonhosted.org/packages/20/01/e7b5496d393768cdbb2b411667143e18967acd11bce422c74d8408e87920/nextflow-24.10.6.tar.gz (from https://pypi.org/simple/nextflow/), version: 24.10.6
2025-06-05T00:13:58,685   Found link https://files.pythonhosted.org/packages/ee/b8/7e58d579482fb167fa63e166b8415bf763e07ecb1cf81ed1a56a50438a34/nextflow-25.4.2.tar.gz (from https://pypi.org/simple/nextflow/), version: 25.4.2
2025-06-05T00:13:58,686   Found link https://files.pythonhosted.org/packages/54/e2/2eec0a6a051dba0399c7e551b1c57a23195ef0f7473cf23c6c49f8bf8519/nextflow-25.4.3.tar.gz (from https://pypi.org/simple/nextflow/), version: 25.4.3
2025-06-05T00:13:58,687   Found link https://files.pythonhosted.org/packages/24/32/5601f3200f50cb2a55ca7bbddabd19c847a28df6837ce471ec1359ddb547/nextflow-25.4.4.tar.gz (from https://pypi.org/simple/nextflow/), version: 25.4.4
2025-06-05T00:13:58,687   Found link https://files.pythonhosted.org/packages/41/84/d3b4acdbed60bec196312c206722cee3c7bc151ff9d8e853506602eb2d99/nextflow-25.4.6.tar.gz (from https://pypi.org/simple/nextflow/), version: 25.4.6
2025-06-05T00:13:58,688 Fetching project page and analyzing links: https://www.piwheels.org/simple/nextflow/
2025-06-05T00:13:58,689 Getting page https://www.piwheels.org/simple/nextflow/
2025-06-05T00:13:58,691 Found index url https://www.piwheels.org/simple/
2025-06-05T00:13:58,845 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/nextflow/
2025-06-05T00:13:59,507 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/nextflow/
2025-06-05T00:14:00,672 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/nextflow/
2025-06-05T00:14:02,848 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/nextflow/
2025-06-05T00:14:07,022 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/nextflow/
2025-06-05T00:14:07,191 Could not fetch URL https://www.piwheels.org/simple/nextflow/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/nextflow/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping
2025-06-05T00:14:07,194 Skipping link: not a file: https://www.piwheels.org/simple/nextflow/
2025-06-05T00:14:07,194 Skipping link: not a file: https://pypi.org/simple/nextflow/
2025-06-05T00:14:07,216 Given no hashes to check 1 links for project 'nextflow': discarding no candidates
2025-06-05T00:14:07,218 Collecting nextflow==24.10.6
2025-06-05T00:14:07,221   Created temporary directory: /tmp/pip-unpack-1ace12nl
2025-06-05T00:14:07,441   Downloading nextflow-24.10.6.tar.gz (7.8 kB)
2025-06-05T00:14:07,476   Added nextflow==24.10.6 from https://files.pythonhosted.org/packages/20/01/e7b5496d393768cdbb2b411667143e18967acd11bce422c74d8408e87920/nextflow-24.10.6.tar.gz to build tracker '/tmp/pip-build-tracker-wuxth6xa'
2025-06-05T00:14:07,479   Running setup.py (path:/tmp/pip-wheel-vfp5e9eb/nextflow_aa007de0fbca44c7b463348657787a9f/setup.py) egg_info for package nextflow
2025-06-05T00:14:07,480   Created temporary directory: /tmp/pip-pip-egg-info-5ozez8gt
2025-06-05T00:14:07,480   Preparing metadata (setup.py): started
2025-06-05T00:14:07,482   Running command python setup.py egg_info
2025-06-05T00:14:08,369   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-06-05T00:14:08,369   !!

2025-06-05T00:14:08,370           ********************************************************************************
2025-06-05T00:14:08,371           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-06-05T00:14:08,372           License :: OSI Approved :: Apache Software License

2025-06-05T00:14:08,373           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-06-05T00:14:08,374           ********************************************************************************

2025-06-05T00:14:08,375   !!
2025-06-05T00:14:08,376     self._finalize_license_expression()
2025-06-05T00:14:08,400   running egg_info
2025-06-05T00:14:08,430   creating /tmp/pip-pip-egg-info-5ozez8gt/nextflow.egg-info
2025-06-05T00:14:08,431   writing /tmp/pip-pip-egg-info-5ozez8gt/nextflow.egg-info/PKG-INFO
2025-06-05T00:14:08,434   writing dependency_links to /tmp/pip-pip-egg-info-5ozez8gt/nextflow.egg-info/dependency_links.txt
2025-06-05T00:14:08,437   writing top-level names to /tmp/pip-pip-egg-info-5ozez8gt/nextflow.egg-info/top_level.txt
2025-06-05T00:14:08,438   writing manifest file '/tmp/pip-pip-egg-info-5ozez8gt/nextflow.egg-info/SOURCES.txt'
2025-06-05T00:14:08,526   reading manifest file '/tmp/pip-pip-egg-info-5ozez8gt/nextflow.egg-info/SOURCES.txt'
2025-06-05T00:14:08,530   writing manifest file '/tmp/pip-pip-egg-info-5ozez8gt/nextflow.egg-info/SOURCES.txt'
2025-06-05T00:14:08,635   Preparing metadata (setup.py): finished with status 'done'
2025-06-05T00:14:08,639   Source in /tmp/pip-wheel-vfp5e9eb/nextflow_aa007de0fbca44c7b463348657787a9f has version 24.10.6, which satisfies requirement nextflow==24.10.6 from https://files.pythonhosted.org/packages/20/01/e7b5496d393768cdbb2b411667143e18967acd11bce422c74d8408e87920/nextflow-24.10.6.tar.gz
2025-06-05T00:14:08,640   Removed nextflow==24.10.6 from https://files.pythonhosted.org/packages/20/01/e7b5496d393768cdbb2b411667143e18967acd11bce422c74d8408e87920/nextflow-24.10.6.tar.gz from build tracker '/tmp/pip-build-tracker-wuxth6xa'
2025-06-05T00:14:08,645 Created temporary directory: /tmp/pip-unpack-b6z5t4s6
2025-06-05T00:14:08,646 Created temporary directory: /tmp/pip-unpack-emc6tx1s
2025-06-05T00:14:08,646 Building wheels for collected packages: nextflow
2025-06-05T00:14:08,651   Created temporary directory: /tmp/pip-wheel-7n1pb6k5
2025-06-05T00:14:08,652   DEPRECATION: Building 'nextflow' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'nextflow'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-06-05T00:14:08,653   Building wheel for nextflow (setup.py): started
2025-06-05T00:14:08,654   Destination directory: /tmp/pip-wheel-7n1pb6k5
2025-06-05T00:14:08,655   Running command python setup.py bdist_wheel
2025-06-05T00:14:09,494   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-06-05T00:14:09,494   !!

2025-06-05T00:14:09,495           ********************************************************************************
2025-06-05T00:14:09,496           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-06-05T00:14:09,497           License :: OSI Approved :: Apache Software License

2025-06-05T00:14:09,498           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-06-05T00:14:09,498           ********************************************************************************

2025-06-05T00:14:09,499   !!
2025-06-05T00:14:09,500     self._finalize_license_expression()
2025-06-05T00:14:09,500   running bdist_wheel
2025-06-05T00:14:09,634   running build
2025-06-05T00:14:09,635   running build_scripts
2025-06-05T00:14:09,635   creating build/scripts-3.11
2025-06-05T00:14:09,637   copying launcher/nextflow -> build/scripts-3.11
2025-06-05T00:14:09,640   changing mode of build/scripts-3.11/nextflow from 644 to 755
2025-06-05T00:14:09,670   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-06-05T00:14:09,671   !!

2025-06-05T00:14:09,672           ********************************************************************************
2025-06-05T00:14:09,673           Please avoid running ``setup.py`` directly.
2025-06-05T00:14:09,673           Instead, use pypa/build, pypa/installer or other
2025-06-05T00:14:09,674           standards-based tools.

2025-06-05T00:14:09,675           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-06-05T00:14:09,676           or your builds will no longer be supported.

2025-06-05T00:14:09,677           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-06-05T00:14:09,678           ********************************************************************************

2025-06-05T00:14:09,679   !!
2025-06-05T00:14:09,679     self.initialize_options()
2025-06-05T00:14:09,700   installing to build/bdist.linux-armv7l/wheel
2025-06-05T00:14:09,701   running install
2025-06-05T00:14:09,724   running install_egg_info
2025-06-05T00:14:09,784   running egg_info
2025-06-05T00:14:09,811   writing nextflow.egg-info/PKG-INFO
2025-06-05T00:14:09,815   writing dependency_links to nextflow.egg-info/dependency_links.txt
2025-06-05T00:14:09,817   writing top-level names to nextflow.egg-info/top_level.txt
2025-06-05T00:14:09,847   reading manifest file 'nextflow.egg-info/SOURCES.txt'
2025-06-05T00:14:09,852   writing manifest file 'nextflow.egg-info/SOURCES.txt'
2025-06-05T00:14:09,854   Copying nextflow.egg-info to build/bdist.linux-armv7l/wheel/./nextflow-24.10.6-py3.11.egg-info
2025-06-05T00:14:09,863   running install_scripts
2025-06-05T00:14:09,864   creating build/bdist.linux-armv7l/wheel/nextflow-24.10.6.data/scripts
2025-06-05T00:14:09,866   copying build/scripts-3.11/nextflow -> build/bdist.linux-armv7l/wheel/nextflow-24.10.6.data/scripts
2025-06-05T00:14:09,868   changing mode of build/bdist.linux-armv7l/wheel/nextflow-24.10.6.data/scripts/nextflow to 755
2025-06-05T00:14:09,879   creating build/bdist.linux-armv7l/wheel/nextflow-24.10.6.dist-info/WHEEL
2025-06-05T00:14:09,882   creating '/tmp/pip-wheel-7n1pb6k5/nextflow-24.10.6-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-06-05T00:14:09,887   adding 'nextflow-24.10.6.data/scripts/nextflow'
2025-06-05T00:14:09,890   adding 'nextflow-24.10.6.dist-info/METADATA'
2025-06-05T00:14:09,891   adding 'nextflow-24.10.6.dist-info/WHEEL'
2025-06-05T00:14:09,892   adding 'nextflow-24.10.6.dist-info/top_level.txt'
2025-06-05T00:14:09,893   adding 'nextflow-24.10.6.dist-info/RECORD'
2025-06-05T00:14:09,894   removing build/bdist.linux-armv7l/wheel
2025-06-05T00:14:10,006   Building wheel for nextflow (setup.py): finished with status 'done'
2025-06-05T00:14:10,009   Created wheel for nextflow: filename=nextflow-24.10.6-py3-none-any.whl size=7972 sha256=e949c0fcff0e7c78474e4d8a037b45bc15bbf1051fdd476088ceb0a0f5a5224a
2025-06-05T00:14:10,010   Stored in directory: /tmp/pip-ephem-wheel-cache-nr4_lnfi/wheels/12/42/ab/e720d09a2eb0403718911adc27dd70b03cea120f4109df2377
2025-06-05T00:14:10,019 Successfully built nextflow
2025-06-05T00:14:10,023 Removed build tracker: '/tmp/pip-build-tracker-wuxth6xa'