2025-06-05T16:21:05,561 Created temporary directory: /tmp/pip-build-tracker-nmwpzq9z 2025-06-05T16:21:05,563 Initialized build tracking at /tmp/pip-build-tracker-nmwpzq9z 2025-06-05T16:21:05,563 Created build tracker: /tmp/pip-build-tracker-nmwpzq9z 2025-06-05T16:21:05,564 Entered build tracker: /tmp/pip-build-tracker-nmwpzq9z 2025-06-05T16:21:05,565 Created temporary directory: /tmp/pip-wheel-vdw6jbpy 2025-06-05T16:21:05,570 Created temporary directory: /tmp/pip-ephem-wheel-cache-cz9njkl2 2025-06-05T16:21:05,621 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-06-05T16:21:05,624 2 location(s) to search for versions of snakemake: 2025-06-05T16:21:05,624 * https://pypi.org/simple/snakemake/ 2025-06-05T16:21:05,624 * https://www.piwheels.org/simple/snakemake/ 2025-06-05T16:21:05,624 Fetching project page and analyzing links: https://pypi.org/simple/snakemake/ 2025-06-05T16:21:05,625 Getting page https://pypi.org/simple/snakemake/ 2025-06-05T16:21:05,627 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https://files.pythonhosted.org/packages/6d/b0/95a50f05264c61d45c8af90a22bcbb0358998ec64fde11a91e17c4bf2a5f/snakemake-9.8.0-py3-none-any.whl (from https://pypi.org/simple/snakemake/) (requires-python:>=3.11) 2025-06-05T16:21:06,373 Found link https://files.pythonhosted.org/packages/65/a8/cb1b67cc43a481c8faa9c9c500149a194e19d99eb1e6d5414308bd01fbd3/snakemake-9.8.0.tar.gz (from https://pypi.org/simple/snakemake/) (requires-python:>=3.11), version: 9.8.0 2025-06-05T16:21:06,374 Skipping link: No binaries permitted for snakemake: https://files.pythonhosted.org/packages/a9/05/ad3f39e609e981d6d2cb78eb87029a75a2d5da4e71652e460fa0060f8b74/snakemake-9.8.1-py3-none-any.whl (from https://pypi.org/simple/snakemake/) (requires-python:>=3.11) 2025-06-05T16:21:06,375 Found link https://files.pythonhosted.org/packages/1d/d2/ab229ab89a84680d150007e47d868871a9e4d977048a59e7727cb011b646/snakemake-9.8.1.tar.gz (from https://pypi.org/simple/snakemake/) (requires-python:>=3.11), version: 9.8.1 2025-06-05T16:21:06,376 Skipping link: No binaries permitted for snakemake: https://files.pythonhosted.org/packages/da/c4/561c045dd768124e21ee9b6052833f6419d8726b7349d741b97367936be4/snakemake-9.8.2-py3-none-any.whl (from https://pypi.org/simple/snakemake/) (requires-python:>=3.11) 2025-06-05T16:21:06,376 Found link https://files.pythonhosted.org/packages/61/35/ae395df4ca7b77cf9eaf3143b5511eb8dfdf86f13599d77f118cc0c6cd89/snakemake-9.8.2.tar.gz (from https://pypi.org/simple/snakemake/) (requires-python:>=3.11), version: 9.8.2 2025-06-05T16:21:06,377 Skipping link: No binaries permitted for snakemake: https://files.pythonhosted.org/packages/72/a4/1cabb89926ce72279b00a417c0a3a5d7fc8da66f6112923a3e14aaf82c7e/snakemake-9.9.0-py3-none-any.whl (from https://pypi.org/simple/snakemake/) (requires-python:>=3.11) 2025-06-05T16:21:06,377 Found link https://files.pythonhosted.org/packages/31/8d/bb5c02a536ccb1d15f03a7afc2a74629458f48985fe2826d4738151eac00/snakemake-9.9.0.tar.gz (from https://pypi.org/simple/snakemake/) (requires-python:>=3.11), version: 9.9.0 2025-06-05T16:21:06,378 Fetching project page and analyzing links: https://www.piwheels.org/simple/snakemake/ 2025-06-05T16:21:06,379 Getting page https://www.piwheels.org/simple/snakemake/ 2025-06-05T16:21:06,381 Found index url https://www.piwheels.org/simple/ 2025-06-05T16:21:06,539 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/snakemake/ 2025-06-05T16:21:07,195 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/snakemake/ 2025-06-05T16:21:08,366 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/snakemake/ 2025-06-05T16:21:10,546 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/snakemake/ 2025-06-05T16:21:14,719 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/snakemake/ 2025-06-05T16:21:14,890 Could not fetch URL https://www.piwheels.org/simple/snakemake/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/snakemake/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping 2025-06-05T16:21:14,892 Skipping link: not a file: https://www.piwheels.org/simple/snakemake/ 2025-06-05T16:21:14,893 Skipping link: not a file: https://pypi.org/simple/snakemake/ 2025-06-05T16:21:14,959 Given no hashes to check 1 links for project 'snakemake': discarding no candidates 2025-06-05T16:21:14,962 Collecting snakemake==9.3.3 2025-06-05T16:21:14,965 Created temporary directory: /tmp/pip-unpack-9h2r0rbj 2025-06-05T16:21:15,192 Downloading snakemake-9.3.3.tar.gz (6.0 MB) 2025-06-05T16:21:19,215 ERROR: Exception: 2025-06-05T16:21:19,215 Traceback (most recent call last): 2025-06-05T16:21:19,215 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/utils/unpacking.py", line 188, in untar_file 2025-06-05T16:21:19,215 data_filter = tarfile.data_filter 2025-06-05T16:21:19,215 ^^^^^^^^^^^^^^^^^^^ 2025-06-05T16:21:19,215 AttributeError: module 'tarfile' has no attribute 'data_filter' 2025-06-05T16:21:19,215 2025-06-05T16:21:19,215 During handling of the above exception, another exception occurred: 2025-06-05T16:21:19,215 2025-06-05T16:21:19,215 Traceback (most recent call last): 2025-06-05T16:21:19,215 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 107, in _run_wrapper 2025-06-05T16:21:19,215 status = _inner_run() 2025-06-05T16:21:19,215 ^^^^^^^^^^^^ 2025-06-05T16:21:19,215 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/base_command.py", line 98, in _inner_run 2025-06-05T16:21:19,215 return self.run(options, args) 2025-06-05T16:21:19,215 ^^^^^^^^^^^^^^^^^^^^^^^ 2025-06-05T16:21:19,215 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/cli/req_command.py", line 71, in wrapper 2025-06-05T16:21:19,215 return func(self, options, args) 2025-06-05T16:21:19,215 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-06-05T16:21:19,215 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/commands/wheel.py", line 146, in run 2025-06-05T16:21:19,215 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2025-06-05T16:21:19,215 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-06-05T16:21:19,215 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 98, in resolve 2025-06-05T16:21:19,215 result = self._result = resolver.resolve( 2025-06-05T16:21:19,215 ^^^^^^^^^^^^^^^^^ 2025-06-05T16:21:19,215 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 596, in resolve 2025-06-05T16:21:19,215 state = resolution.resolve(requirements, max_rounds=max_rounds) 2025-06-05T16:21:19,215 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-06-05T16:21:19,215 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 429, in resolve 2025-06-05T16:21:19,215 self._add_to_criteria(self.state.criteria, r, parent=None) 2025-06-05T16:21:19,215 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/resolvers/resolution.py", line 150, in _add_to_criteria 2025-06-05T16:21:19,215 if not criterion.candidates: 2025-06-05T16:21:19,215 File "/usr/local/lib/python3.11/dist-packages/pip/_vendor/resolvelib/structs.py", line 194, in __bool__ 2025-06-05T16:21:19,215 return bool(self._sequence) 2025-06-05T16:21:19,215 ^^^^^^^^^^^^^^^^^^^^ 2025-06-05T16:21:19,215 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 165, in __bool__ 2025-06-05T16:21:19,215 self._bool = any(self) 2025-06-05T16:21:19,215 ^^^^^^^^^ 2025-06-05T16:21:19,215 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 149, in 2025-06-05T16:21:19,215 return (c for c in iterator if id(c) not in self._incompatible_ids) 2025-06-05T16:21:19,215 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-06-05T16:21:19,215 File "/usr/local/lib/python3.11/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 39, in _iter_built 2025-06-05T16:21:19,215 candidate = func() 2025-06-05T16:21:19,215 ^^^^^^ 2025-06-05T16:21:19,215 File "/usr/local/lib/pytho2025-06-05T16:21:19,238 Removed build tracker: '/tmp/pip-build-tracker-nmwpzq9z'