2025-06-05T05:40:28,932 Created temporary directory: /tmp/pip-build-tracker-l9yu112n 2025-06-05T05:40:28,933 Initialized build tracking at /tmp/pip-build-tracker-l9yu112n 2025-06-05T05:40:28,934 Created build tracker: /tmp/pip-build-tracker-l9yu112n 2025-06-05T05:40:28,934 Entered build tracker: /tmp/pip-build-tracker-l9yu112n 2025-06-05T05:40:28,935 Created temporary directory: /tmp/pip-wheel-tn4l8cx_ 2025-06-05T05:40:28,939 Created temporary directory: /tmp/pip-ephem-wheel-cache-ka1_9kod 2025-06-05T05:40:28,986 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-06-05T05:40:28,989 2 location(s) to search for versions of biorefineries: 2025-06-05T05:40:28,989 * https://pypi.org/simple/biorefineries/ 2025-06-05T05:40:28,989 * https://www.piwheels.org/simple/biorefineries/ 2025-06-05T05:40:28,989 Fetching project page and analyzing links: https://pypi.org/simple/biorefineries/ 2025-06-05T05:40:28,990 Getting page https://pypi.org/simple/biorefineries/ 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https://files.pythonhosted.org/packages/54/ad/b1d223661c615f621ccf9d96d56e2cac4aff237ab7b67df89de87e97856a/biorefineries-2.24.0.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.24.0 2025-06-05T05:40:29,326 Found link https://files.pythonhosted.org/packages/cb/cd/2c6590a3707b128e2e18f88e5e8bafc11f66c696b13cd48a8d3904c1a7e9/biorefineries-2.25.0.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.25.0 2025-06-05T05:40:29,327 Found link https://files.pythonhosted.org/packages/0a/fb/ab19a7d509067bd1a3e6b5a3206353f76a20d0560a993bcc54f3834271d1/biorefineries-2.26.0.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.26.0 2025-06-05T05:40:29,327 Found link https://files.pythonhosted.org/packages/aa/11/6b1b4699e6f73e913ad9aba24dcc47b4bf71326f89560a9991da01d2ce2a/biorefineries-2.26.1.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.26.1 2025-06-05T05:40:29,328 Found link https://files.pythonhosted.org/packages/bd/27/da932b8ccd134a8cf91e3255a895f0e7b4ca5be730f4f647aaaf5707b129/biorefineries-2.26.2.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.26.2 2025-06-05T05:40:29,329 Found link https://files.pythonhosted.org/packages/a1/be/361e29090e4c191970a776e0825984963b7af2af3b3e187478dfa7fd1aeb/biorefineries-2.26.3.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.26.3 2025-06-05T05:40:29,329 Found link https://files.pythonhosted.org/packages/8c/93/3f84da15e7cae7dc3ea52b9aecbc04ec3c0a94a38a1dd37fb5ee19db62d5/biorefineries-2.27.0.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.27.0 2025-06-05T05:40:29,330 Found link https://files.pythonhosted.org/packages/fc/5b/dfbd1b69f7a3973cab60cb6b5956beea3b592f4dc52dfd5e22debaaa1eb4/biorefineries-2.28.0.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.28.0 2025-06-05T05:40:29,330 Found link https://files.pythonhosted.org/packages/a0/61/1dc078b2a9edb2aa6bbb811ef0284a2ce28ede5c47e4cdfa2a91e2af8602/biorefineries-2.29.0.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.29.0 2025-06-05T05:40:29,331 Found link https://files.pythonhosted.org/packages/43/d5/88b9e32b0aca0f72eeaa244a249a3506e535fac5aad149d9f07095eaf234/biorefineries-2.30.0.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.30.0 2025-06-05T05:40:29,332 Found link https://files.pythonhosted.org/packages/98/98/25db2013c0782c05b56be59643001bb6eb957774aab20bcde13c565dd393/biorefineries-2.31.0.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.31.0 2025-06-05T05:40:29,333 Found link https://files.pythonhosted.org/packages/e0/73/94787709c74a6024177a42f16af9934dec2d00a01fd8248e2c0783e5c4eb/biorefineries-2.32.0.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.32.0 2025-06-05T05:40:29,333 Found link https://files.pythonhosted.org/packages/00/b3/a660dd043e4da0555f31eb963f6db57871d72ea292e21ac069e07e08261a/biorefineries-2.32.1.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.32.1 2025-06-05T05:40:29,334 Found link https://files.pythonhosted.org/packages/f5/df/e2806eb3a5d1cc2fce1d47b9eee568041b7ba168e5f79a254e40bc31d567/biorefineries-2.32.2.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.32.2 2025-06-05T05:40:29,335 Found link https://files.pythonhosted.org/packages/1a/01/a509b9fa25b473c4946e5d0e473ac9e8487155fcde435faf732381059ed3/biorefineries-2.34.0.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.34.0 2025-06-05T05:40:29,335 Found link https://files.pythonhosted.org/packages/88/99/a281c21d0fa3f18a3f0b1305ef0d8f37af2007be26cfaa2fdbd18f0e38c4/biorefineries-2.34.1.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.34.1 2025-06-05T05:40:29,336 Found link https://files.pythonhosted.org/packages/a5/7c/75c89a881b44fd613e1a726018ff2e990c7cd004b99c373e001b22d3e7da/biorefineries-2.34.2.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.34.2 2025-06-05T05:40:29,337 Found link https://files.pythonhosted.org/packages/d0/18/21936150b0aaced289ca0ce66b8c1849aea0e6b697c37c30366c4544bc3c/biorefineries-2.34.3.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.34.3 2025-06-05T05:40:29,337 Found link https://files.pythonhosted.org/packages/eb/30/282559d3858fee72e9ac2f0243c9a6e2d6107c452cc0a2a81c800c08f0da/biorefineries-2.34.4.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.34.4 2025-06-05T05:40:29,338 Found link https://files.pythonhosted.org/packages/7f/a2/965957e84893d444df2ac691b41796b08a90c5135226d76b2199f6cac473/biorefineries-2.34.5.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.34.5 2025-06-05T05:40:29,339 Found link https://files.pythonhosted.org/packages/de/e5/75d96878c9156b59227c4b9587466d58b879f91b48ae509ed2d44a604f58/biorefineries-2.34.6.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.34.6 2025-06-05T05:40:29,339 Found link https://files.pythonhosted.org/packages/dc/f0/7645088da65009a981a08e0d0c7e21342e4fa9e7a1ab0392ed25e88c63a7/biorefineries-2.34.7.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.34.7 2025-06-05T05:40:29,340 Found link https://files.pythonhosted.org/packages/24/6f/2fbd894ecce9381baa00fa7d057bbc742b1665d759149b70b6a41ca8b045/biorefineries-2.34.8.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.34.8 2025-06-05T05:40:29,340 Found link https://files.pythonhosted.org/packages/e0/fb/df23010230202a6caf5a966342497ab01795297ce3ee4212b15143e8c5ce/biorefineries-2.34.9.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.34.9 2025-06-05T05:40:29,341 Found link https://files.pythonhosted.org/packages/90/35/ed933b7d09f1f4b9de3c0f16e1092516022744ca6240c828e86d15988fc4/biorefineries-2.34.10.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.34.10 2025-06-05T05:40:29,342 Fetching project page and analyzing links: https://www.piwheels.org/simple/biorefineries/ 2025-06-05T05:40:29,342 Getting page https://www.piwheels.org/simple/biorefineries/ 2025-06-05T05:40:29,344 Found index url https://www.piwheels.org/simple/ 2025-06-05T05:40:29,495 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biorefineries/ 2025-06-05T05:40:30,150 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biorefineries/ 2025-06-05T05:40:31,298 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biorefineries/ 2025-06-05T05:40:33,513 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biorefineries/ 2025-06-05T05:40:37,718 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biorefineries/ 2025-06-05T05:40:37,919 Could not fetch URL https://www.piwheels.org/simple/biorefineries/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/biorefineries/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping 2025-06-05T05:40:37,921 Skipping link: not a file: https://www.piwheels.org/simple/biorefineries/ 2025-06-05T05:40:37,922 Skipping link: not a file: https://pypi.org/simple/biorefineries/ 2025-06-05T05:40:37,957 Given no hashes to check 1 links for project 'biorefineries': discarding no candidates 2025-06-05T05:40:37,960 Collecting biorefineries==2.34.5 2025-06-05T05:40:37,962 Created temporary directory: /tmp/pip-unpack-yxj59ceb 2025-06-05T05:40:38,191 Downloading biorefineries-2.34.5.tar.gz (13.6 MB) 2025-06-05T05:40:41,662 Added biorefineries==2.34.5 from https://files.pythonhosted.org/packages/7f/a2/965957e84893d444df2ac691b41796b08a90c5135226d76b2199f6cac473/biorefineries-2.34.5.tar.gz to build tracker '/tmp/pip-build-tracker-l9yu112n' 2025-06-05T05:40:41,665 Running setup.py (path:/tmp/pip-wheel-tn4l8cx_/biorefineries_98f849a7ec8e48e8985b1e6823322003/setup.py) egg_info for package biorefineries 2025-06-05T05:40:41,666 Created temporary directory: /tmp/pip-pip-egg-info-qmbv819b 2025-06-05T05:40:41,667 Preparing metadata (setup.py): started 2025-06-05T05:40:41,668 Running command python setup.py egg_info 2025-06-05T05:40:42,539 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-06-05T05:40:42,539 !! 2025-06-05T05:40:42,540 ******************************************************************************** 2025-06-05T05:40:42,541 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-06-05T05:40:42,542 License :: OSI Approved :: MIT License 2025-06-05T05:40:42,543 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-05T05:40:42,543 ******************************************************************************** 2025-06-05T05:40:42,544 !! 2025-06-05T05:40:42,545 self._finalize_license_expression() 2025-06-05T05:40:42,567 running egg_info 2025-06-05T05:40:42,593 creating /tmp/pip-pip-egg-info-qmbv819b/biorefineries.egg-info 2025-06-05T05:40:42,594 writing /tmp/pip-pip-egg-info-qmbv819b/biorefineries.egg-info/PKG-INFO 2025-06-05T05:40:42,597 writing dependency_links to /tmp/pip-pip-egg-info-qmbv819b/biorefineries.egg-info/dependency_links.txt 2025-06-05T05:40:42,599 writing requirements to /tmp/pip-pip-egg-info-qmbv819b/biorefineries.egg-info/requires.txt 2025-06-05T05:40:42,600 writing top-level names to /tmp/pip-pip-egg-info-qmbv819b/biorefineries.egg-info/top_level.txt 2025-06-05T05:40:42,602 writing manifest file '/tmp/pip-pip-egg-info-qmbv819b/biorefineries.egg-info/SOURCES.txt' 2025-06-05T05:40:42,726 reading manifest file '/tmp/pip-pip-egg-info-qmbv819b/biorefineries.egg-info/SOURCES.txt' 2025-06-05T05:40:42,728 adding license file 'LICENSE.txt' 2025-06-05T05:40:42,738 writing manifest file '/tmp/pip-pip-egg-info-qmbv819b/biorefineries.egg-info/SOURCES.txt' 2025-06-05T05:40:42,843 Preparing metadata (setup.py): finished with status 'done' 2025-06-05T05:40:42,847 Source in /tmp/pip-wheel-tn4l8cx_/biorefineries_98f849a7ec8e48e8985b1e6823322003 has version 2.34.5, which satisfies requirement biorefineries==2.34.5 from https://files.pythonhosted.org/packages/7f/a2/965957e84893d444df2ac691b41796b08a90c5135226d76b2199f6cac473/biorefineries-2.34.5.tar.gz 2025-06-05T05:40:42,848 Removed biorefineries==2.34.5 from https://files.pythonhosted.org/packages/7f/a2/965957e84893d444df2ac691b41796b08a90c5135226d76b2199f6cac473/biorefineries-2.34.5.tar.gz from build tracker '/tmp/pip-build-tracker-l9yu112n' 2025-06-05T05:40:42,855 Created temporary directory: /tmp/pip-unpack-ni40rdnx 2025-06-05T05:40:42,856 Created temporary directory: /tmp/pip-unpack-cjlh3ebj 2025-06-05T05:40:42,857 Building wheels for collected packages: biorefineries 2025-06-05T05:40:42,861 Created temporary directory: /tmp/pip-wheel-2xg0cb50 2025-06-05T05:40:42,862 DEPRECATION: Building 'biorefineries' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'biorefineries'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-06-05T05:40:42,863 Building wheel for biorefineries (setup.py): started 2025-06-05T05:40:42,865 Destination directory: /tmp/pip-wheel-2xg0cb50 2025-06-05T05:40:42,865 Running command python setup.py bdist_wheel 2025-06-05T05:40:43,716 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-06-05T05:40:43,716 !! 2025-06-05T05:40:43,717 ******************************************************************************** 2025-06-05T05:40:43,718 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-06-05T05:40:43,719 License :: OSI Approved :: MIT License 2025-06-05T05:40:43,720 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-05T05:40:43,720 ******************************************************************************** 2025-06-05T05:40:43,721 !! 2025-06-05T05:40:43,722 self._finalize_license_expression() 2025-06-05T05:40:43,722 running bdist_wheel 2025-06-05T05:40:43,851 running build 2025-06-05T05:40:43,852 running build_py 2025-06-05T05:40:43,882 creating build/lib/biorefineries 2025-06-05T05:40:43,884 copying biorefineries/__init__.py -> build/lib/biorefineries 2025-06-05T05:40:43,916 creating build/lib/biorefineries/cane 2025-06-05T05:40:43,917 copying biorefineries/cane/evaluation.py -> build/lib/biorefineries/cane 2025-06-05T05:40:43,920 copying biorefineries/cane/README.md -> build/lib/biorefineries/cane 2025-06-05T05:40:43,923 copying biorefineries/cane/uncertainty_plots.py -> build/lib/biorefineries/cane 2025-06-05T05:40:43,928 copying biorefineries/cane/feature_mockups.py -> build/lib/biorefineries/cane 2025-06-05T05:40:43,931 copying biorefineries/cane/chemicals.py -> build/lib/biorefineries/cane 2025-06-05T05:40:43,935 copying biorefineries/cane/__init__.py -> build/lib/biorefineries/cane 2025-06-05T05:40:43,937 copying biorefineries/cane/streams.py -> build/lib/biorefineries/cane 2025-06-05T05:40:43,940 copying biorefineries/cane/biorefinery.py -> build/lib/biorefineries/cane 2025-06-05T05:40:43,944 copying biorefineries/cane/process_settings.py -> build/lib/biorefineries/cane 2025-06-05T05:40:43,946 copying biorefineries/cane/configurations_biomass_yield_analysis.npy -> build/lib/biorefineries/cane 2025-06-05T05:40:43,951 copying biorefineries/cane/units.py -> build/lib/biorefineries/cane 2025-06-05T05:40:43,954 copying biorefineries/cane/rename_soon.py -> build/lib/biorefineries/cane 2025-06-05T05:40:43,956 copying biorefineries/cane/oil_extraction.py -> build/lib/biorefineries/cane 2025-06-05T05:40:43,958 copying biorefineries/cane/tables.py -> build/lib/biorefineries/cane 2025-06-05T05:40:43,961 copying biorefineries/cane/contour_plots.py -> build/lib/biorefineries/cane 2025-06-05T05:40:43,964 copying biorefineries/cane/results.py -> build/lib/biorefineries/cane 2025-06-05T05:40:43,967 copying biorefineries/cane/composition.py -> build/lib/biorefineries/cane 2025-06-05T05:40:43,971 copying biorefineries/cane/parse_configuration.py -> build/lib/biorefineries/cane 2025-06-05T05:40:43,973 creating build/lib/biorefineries/cane/systems 2025-06-05T05:40:43,974 copying biorefineries/cane/systems/juicing.py -> build/lib/biorefineries/cane/systems 2025-06-05T05:40:43,977 copying biorefineries/cane/systems/lipid_extraction.py -> build/lib/biorefineries/cane/systems 2025-06-05T05:40:43,980 copying biorefineries/cane/systems/cellulosic_biodiesel.py -> build/lib/biorefineries/cane/systems 2025-06-05T05:40:43,983 copying biorefineries/cane/systems/pretreatment.py -> build/lib/biorefineries/cane/systems 2025-06-05T05:40:43,986 copying biorefineries/cane/systems/__init__.py -> build/lib/biorefineries/cane/systems 2025-06-05T05:40:43,988 copying biorefineries/cane/systems/biodiesel.py -> build/lib/biorefineries/cane/systems 2025-06-05T05:40:43,991 copying biorefineries/cane/systems/biodiesel_actag.py -> build/lib/biorefineries/cane/systems 2025-06-05T05:40:43,993 copying biorefineries/cane/systems/sugar.py -> build/lib/biorefineries/cane/systems 2025-06-05T05:40:43,996 copying biorefineries/cane/systems/bagasse.py -> build/lib/biorefineries/cane/systems 2025-06-05T05:40:43,998 copying biorefineries/cane/systems/cellulosic_biodiesel_actag.py -> build/lib/biorefineries/cane/systems 2025-06-05T05:40:44,001 copying biorefineries/cane/systems/fermentation.py -> build/lib/biorefineries/cane/systems 2025-06-05T05:40:44,004 copying biorefineries/cane/systems/lipidcane.py -> build/lib/biorefineries/cane/systems 2025-06-05T05:40:44,006 creating build/lib/biorefineries/cane/systems/oilcane 2025-06-05T05:40:44,007 copying biorefineries/cane/systems/oilcane/cellulosic_biodiesel_ethanol.py -> build/lib/biorefineries/cane/systems/oilcane 2025-06-05T05:40:44,010 copying biorefineries/cane/systems/oilcane/__init__.py -> build/lib/biorefineries/cane/systems/oilcane 2025-06-05T05:40:44,012 copying biorefineries/cane/systems/oilcane/biodiesel_ethanol.py -> build/lib/biorefineries/cane/systems/oilcane 2025-06-05T05:40:44,015 copying biorefineries/cane/systems/oilcane/cellulosic_crude_oil_ethanol.py -> build/lib/biorefineries/cane/systems/oilcane 2025-06-05T05:40:44,017 copying biorefineries/cane/systems/oilcane/crude_oil_ethanol.py -> build/lib/biorefineries/cane/systems/oilcane 2025-06-05T05:40:44,020 creating build/lib/biorefineries/cane/systems/sugarcane 2025-06-05T05:40:44,021 copying biorefineries/cane/systems/sugarcane/sugar_ethanol.py -> build/lib/biorefineries/cane/systems/sugarcane 2025-06-05T05:40:44,024 copying biorefineries/cane/systems/sugarcane/__init__.py -> build/lib/biorefineries/cane/systems/sugarcane 2025-06-05T05:40:44,026 copying biorefineries/cane/systems/sugarcane/cellulosic_ethanol.py -> build/lib/biorefineries/cane/systems/sugarcane 2025-06-05T05:40:44,028 copying biorefineries/cane/systems/sugarcane/ethanol.py -> build/lib/biorefineries/cane/systems/sugarcane 2025-06-05T05:40:44,031 creating build/lib/biorefineries/milk 2025-06-05T05:40:44,032 copying biorefineries/milk/README.md -> build/lib/biorefineries/milk 2025-06-05T05:40:44,034 copying biorefineries/milk/chemicals.py -> build/lib/biorefineries/milk 2025-06-05T05:40:44,037 copying biorefineries/milk/__init__.py -> build/lib/biorefineries/milk 2025-06-05T05:40:44,039 copying biorefineries/milk/tests.py -> build/lib/biorefineries/milk 2025-06-05T05:40:44,042 copying biorefineries/milk/data.py -> build/lib/biorefineries/milk 2025-06-05T05:40:44,044 copying biorefineries/milk/biorefinery.py -> build/lib/biorefineries/milk 2025-06-05T05:40:44,047 copying biorefineries/milk/process_settings.py -> build/lib/biorefineries/milk 2025-06-05T05:40:44,049 copying biorefineries/milk/plots.py -> build/lib/biorefineries/milk 2025-06-05T05:40:44,052 copying biorefineries/milk/uncertainty.py -> build/lib/biorefineries/milk 2025-06-05T05:40:44,055 copying biorefineries/milk/units.py -> build/lib/biorefineries/milk 2025-06-05T05:40:44,057 copying biorefineries/milk/GalactoOligoSaccharideProcess.xlsx -> build/lib/biorefineries/milk 2025-06-05T05:40:44,096 copying biorefineries/milk/systems.py -> build/lib/biorefineries/milk 2025-06-05T05:40:44,099 creating build/lib/biorefineries/milk/images 2025-06-05T05:40:44,100 copying biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate_GlucoseMedia.svg -> build/lib/biorefineries/milk/images 2025-06-05T05:40:44,105 copying biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate.svg -> build/lib/biorefineries/milk/images 2025-06-05T05:40:44,109 copying biorefineries/milk/images/MSP_across_yield_productivity_GlucoseMedia.svg -> build/lib/biorefineries/milk/images 2025-06-05T05:40:44,113 copying biorefineries/milk/images/MSP_across_yield_productivity_GlucoseMedia.png -> build/lib/biorefineries/milk/images 2025-06-05T05:40:44,124 copying biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate_GlucoseMedia.png -> build/lib/biorefineries/milk/images 2025-06-05T05:40:44,133 copying biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate.png -> build/lib/biorefineries/milk/images 2025-06-05T05:40:44,144 creating build/lib/biorefineries/milk/results 2025-06-05T05:40:44,145 copying biorefineries/milk/results/MSP_GWP_titer_productivity_AcEster_GlucoseMedia.npy -> build/lib/biorefineries/milk/results 2025-06-05T05:40:44,148 copying biorefineries/milk/results/MSP_GWP_titer_productivity_AcEster_UFPermeate_GlucoseMedia.npy -> build/lib/biorefineries/milk/results 2025-06-05T05:40:44,151 copying biorefineries/milk/results/MSP_GWP_titer_productivity_AcEster_UFPermeate.npy -> build/lib/biorefineries/milk/results 2025-06-05T05:40:44,153 creating build/lib/biorefineries/cane/data 2025-06-05T05:40:44,155 copying biorefineries/cane/data/RIN_prices_2022.csv -> build/lib/biorefineries/cane/data 2025-06-05T05:40:44,165 copying biorefineries/cane/data/cane_composition_data_full.xlsx -> build/lib/biorefineries/cane/data 2025-06-05T05:40:44,168 copying biorefineries/cane/data/RIN_prices_2023.csv -> build/lib/biorefineries/cane/data 2025-06-05T05:40:44,175 copying biorefineries/cane/data/price_distributions_2022.py -> build/lib/biorefineries/cane/data 2025-06-05T05:40:44,178 copying biorefineries/cane/data/cane_composition_data.xlsx -> build/lib/biorefineries/cane/data 2025-06-05T05:40:44,181 copying biorefineries/cane/data/microbial_oil_baseline.py -> build/lib/biorefineries/cane/data 2025-06-05T05:40:44,184 copying biorefineries/cane/data/price_distributions_2023.py -> build/lib/biorefineries/cane/data 2025-06-05T05:40:44,187 copying biorefineries/cane/data/lca_characterization_factors.py -> build/lib/biorefineries/cane/data 2025-06-05T05:40:44,190 creating build/lib/biorefineries/cellulosic 2025-06-05T05:40:44,191 copying biorefineries/cellulosic/chemicals.py -> build/lib/biorefineries/cellulosic 2025-06-05T05:40:44,194 copying biorefineries/cellulosic/__init__.py -> build/lib/biorefineries/cellulosic 2025-06-05T05:40:44,197 copying biorefineries/cellulosic/streams.py -> build/lib/biorefineries/cellulosic 2025-06-05T05:40:44,199 copying biorefineries/cellulosic/biorefinery.py -> build/lib/biorefineries/cellulosic 2025-06-05T05:40:44,202 copying biorefineries/cellulosic/process_settings.py -> build/lib/biorefineries/cellulosic 2025-06-05T05:40:44,205 copying biorefineries/cellulosic/units.py -> build/lib/biorefineries/cellulosic 2025-06-05T05:40:44,208 creating build/lib/biorefineries/cellulosic/systems 2025-06-05T05:40:44,210 copying biorefineries/cellulosic/systems/__init__.py -> build/lib/biorefineries/cellulosic/systems 2025-06-05T05:40:44,212 copying biorefineries/cellulosic/systems/cellulosic_ethanol.py -> build/lib/biorefineries/cellulosic/systems 2025-06-05T05:40:44,215 creating build/lib/biorefineries/cellulosic/systems/fermentation 2025-06-05T05:40:44,216 copying biorefineries/cellulosic/systems/fermentation/saccharification.py -> build/lib/biorefineries/cellulosic/systems/fermentation 2025-06-05T05:40:44,219 copying biorefineries/cellulosic/systems/fermentation/integrated_bioprocess.py -> build/lib/biorefineries/cellulosic/systems/fermentation 2025-06-05T05:40:44,222 copying biorefineries/cellulosic/systems/fermentation/__init__.py -> build/lib/biorefineries/cellulosic/systems/fermentation 2025-06-05T05:40:44,224 copying biorefineries/cellulosic/systems/fermentation/general_interface.py -> build/lib/biorefineries/cellulosic/systems/fermentation 2025-06-05T05:40:44,228 copying biorefineries/cellulosic/systems/fermentation/cofermentation.py -> build/lib/biorefineries/cellulosic/systems/fermentation 2025-06-05T05:40:44,230 copying biorefineries/cellulosic/systems/fermentation/simultaneous_saccharification_cofermentation.py -> build/lib/biorefineries/cellulosic/systems/fermentation 2025-06-05T05:40:44,232 creating build/lib/biorefineries/cellulosic/systems/pretreatment 2025-06-05T05:40:44,233 copying biorefineries/cellulosic/systems/pretreatment/ammonia_fiber_expansion.py -> build/lib/biorefineries/cellulosic/systems/pretreatment 2025-06-05T05:40:44,236 copying biorefineries/cellulosic/systems/pretreatment/hot_water.py -> build/lib/biorefineries/cellulosic/systems/pretreatment 2025-06-05T05:40:44,238 copying biorefineries/cellulosic/systems/pretreatment/alkaline.py -> build/lib/biorefineries/cellulosic/systems/pretreatment 2025-06-05T05:40:44,240 copying biorefineries/cellulosic/systems/pretreatment/__init__.py -> build/lib/biorefineries/cellulosic/systems/pretreatment 2025-06-05T05:40:44,242 copying biorefineries/cellulosic/systems/pretreatment/dilute_acid.py -> build/lib/biorefineries/cellulosic/systems/pretreatment 2025-06-05T05:40:44,244 creating build/lib/biorefineries/ethanol 2025-06-05T05:40:44,245 copying biorefineries/ethanol/__init__.py -> build/lib/biorefineries/ethanol 2025-06-05T05:40:44,247 copying biorefineries/ethanol/streams.py -> build/lib/biorefineries/ethanol 2025-06-05T05:40:44,249 copying biorefineries/ethanol/systems.py -> build/lib/biorefineries/ethanol 2025-06-05T05:40:44,251 creating build/lib/biorefineries/biodiesel 2025-06-05T05:40:44,252 copying biorefineries/biodiesel/__init__.py -> build/lib/biorefineries/biodiesel 2025-06-05T05:40:44,254 copying biorefineries/biodiesel/streams.py -> build/lib/biorefineries/biodiesel 2025-06-05T05:40:44,257 copying biorefineries/biodiesel/systems.py -> build/lib/biorefineries/biodiesel 2025-06-05T05:40:44,260 creating build/lib/biorefineries/biodiesel/units 2025-06-05T05:40:44,261 copying biorefineries/biodiesel/units/transesterification.py -> build/lib/biorefineries/biodiesel/units 2025-06-05T05:40:44,263 copying biorefineries/biodiesel/units/glycerolysis_reactor.py -> build/lib/biorefineries/biodiesel/units 2025-06-05T05:40:44,265 copying biorefineries/biodiesel/units/__init__.py -> build/lib/biorefineries/biodiesel/units 2025-06-05T05:40:44,268 copying biorefineries/biodiesel/units/skimming_tank.py -> build/lib/biorefineries/biodiesel/units 2025-06-05T05:40:44,270 creating build/lib/biorefineries/tea 2025-06-05T05:40:44,271 copying biorefineries/tea/__init__.py -> build/lib/biorefineries/tea 2025-06-05T05:40:44,273 copying biorefineries/tea/conventional_ethanol_tea.py -> build/lib/biorefineries/tea 2025-06-05T05:40:44,276 copying biorefineries/tea/cellulosic_ethanol_tea.py -> build/lib/biorefineries/tea 2025-06-05T05:40:44,278 creating build/lib/biorefineries/lipidcane 2025-06-05T05:40:44,280 copying biorefineries/lipidcane/_feedstock_analysis.py -> build/lib/biorefineries/lipidcane 2025-06-05T05:40:44,282 copying biorefineries/lipidcane/_process_settings.py -> build/lib/biorefineries/lipidcane 2025-06-05T05:40:44,287 copying biorefineries/lipidcane/__init__.py -> build/lib/biorefineries/lipidcane 2025-06-05T05:40:44,290 copying biorefineries/lipidcane/_system.py -> build/lib/biorefineries/lipidcane 2025-06-05T05:40:44,292 copying biorefineries/lipidcane/_chemicals.py -> build/lib/biorefineries/lipidcane 2025-06-05T05:40:44,294 copying biorefineries/lipidcane/model.py -> build/lib/biorefineries/lipidcane 2025-06-05T05:40:44,297 copying biorefineries/lipidcane/_plot_spearman.py -> build/lib/biorefineries/lipidcane 2025-06-05T05:40:44,300 copying biorefineries/lipidcane/_webapp_model.py -> build/lib/biorefineries/lipidcane 2025-06-05T05:40:44,302 copying biorefineries/lipidcane/README.rst -> build/lib/biorefineries/lipidcane 2025-06-05T05:40:44,305 copying biorefineries/lipidcane/sankey_plot.ipynb -> build/lib/biorefineries/lipidcane 2025-06-05T05:40:44,358 copying biorefineries/lipidcane/_plot_uncertainty.py -> build/lib/biorefineries/lipidcane 2025-06-05T05:40:44,360 copying biorefineries/lipidcane/_tea.py -> build/lib/biorefineries/lipidcane 2025-06-05T05:40:44,363 copying biorefineries/lipidcane/_analysis.py -> build/lib/biorefineries/lipidcane 2025-06-05T05:40:44,365 creating build/lib/biorefineries/oilcane 2025-06-05T05:40:44,366 copying biorefineries/oilcane/utils.py -> build/lib/biorefineries/oilcane 2025-06-05T05:40:44,369 copying biorefineries/oilcane/_tables.py -> build/lib/biorefineries/oilcane 2025-06-05T05:40:44,371 copying biorefineries/oilcane/README.md -> build/lib/biorefineries/oilcane 2025-06-05T05:40:44,374 copying biorefineries/oilcane/_contour_plots.py -> build/lib/biorefineries/oilcane 2025-06-05T05:40:44,377 copying biorefineries/oilcane/_feature_mockups.py -> build/lib/biorefineries/oilcane 2025-06-05T05:40:44,379 copying biorefineries/oilcane/_evaluation.py -> build/lib/biorefineries/oilcane 2025-06-05T05:40:44,381 copying biorefineries/oilcane/__init__.py -> build/lib/biorefineries/oilcane 2025-06-05T05:40:44,384 copying biorefineries/oilcane/_chemicals.py -> build/lib/biorefineries/oilcane 2025-06-05T05:40:44,387 copying biorefineries/oilcane/lca_benchmarks.py -> build/lib/biorefineries/oilcane 2025-06-05T05:40:44,389 copying biorefineries/oilcane/_parse_configuration.py -> build/lib/biorefineries/oilcane 2025-06-05T05:40:44,391 copying biorefineries/oilcane/sankey_energy.ipynb -> build/lib/biorefineries/oilcane 2025-06-05T05:40:44,449 copying biorefineries/oilcane/_load_data.py -> build/lib/biorefineries/oilcane 2025-06-05T05:40:44,452 copying biorefineries/oilcane/webapp_model.py -> build/lib/biorefineries/oilcane 2025-06-05T05:40:44,455 copying biorefineries/oilcane/sankey_plot.ipynb -> build/lib/biorefineries/oilcane 2025-06-05T05:40:44,458 copying biorefineries/oilcane/units.py -> build/lib/biorefineries/oilcane 2025-06-05T05:40:44,461 copying biorefineries/oilcane/_uncertainty_plots.py -> build/lib/biorefineries/oilcane 2025-06-05T05:40:44,464 copying biorefineries/oilcane/_line_plots.py -> build/lib/biorefineries/oilcane 2025-06-05T05:40:44,467 copying biorefineries/oilcane/_tea.py -> build/lib/biorefineries/oilcane 2025-06-05T05:40:44,470 copying biorefineries/oilcane/systems.py -> build/lib/biorefineries/oilcane 2025-06-05T05:40:44,472 creating build/lib/biorefineries/cornstover 2025-06-05T05:40:44,474 copying biorefineries/cornstover/_plot_single_point.py -> build/lib/biorefineries/cornstover 2025-06-05T05:40:44,477 copying biorefineries/cornstover/_process_settings.py -> build/lib/biorefineries/cornstover 2025-06-05T05:40:44,479 copying biorefineries/cornstover/__init__.py -> build/lib/biorefineries/cornstover 2025-06-05T05:40:44,482 copying biorefineries/cornstover/_chemicals.py -> build/lib/biorefineries/cornstover 2025-06-05T05:40:44,484 copying biorefineries/cornstover/model.py -> build/lib/biorefineries/cornstover 2025-06-05T05:40:44,487 copying biorefineries/cornstover/_legacy_code.py -> build/lib/biorefineries/cornstover 2025-06-05T05:40:44,490 copying biorefineries/cornstover/_plot_spearman.py -> build/lib/biorefineries/cornstover 2025-06-05T05:40:44,493 copying biorefineries/cornstover/_sankey.py -> build/lib/biorefineries/cornstover 2025-06-05T05:40:44,495 copying biorefineries/cornstover/README.rst -> build/lib/biorefineries/cornstover 2025-06-05T05:40:44,498 copying biorefineries/cornstover/webapp_model.py -> build/lib/biorefineries/cornstover 2025-06-05T05:40:44,501 copying biorefineries/cornstover/_plot_bars.py -> build/lib/biorefineries/cornstover 2025-06-05T05:40:44,504 copying biorefineries/cornstover/units.py -> build/lib/biorefineries/cornstover 2025-06-05T05:40:44,506 copying biorefineries/cornstover/_plot_uncertainty.py -> build/lib/biorefineries/cornstover 2025-06-05T05:40:44,509 copying biorefineries/cornstover/_switchgrass.py -> build/lib/biorefineries/cornstover 2025-06-05T05:40:44,512 copying biorefineries/cornstover/_tea.py -> build/lib/biorefineries/cornstover 2025-06-05T05:40:44,514 copying biorefineries/cornstover/_analysis.py -> build/lib/biorefineries/cornstover 2025-06-05T05:40:44,517 copying biorefineries/cornstover/systems.py -> build/lib/biorefineries/cornstover 2025-06-05T05:40:44,519 creating build/lib/biorefineries/corn 2025-06-05T05:40:44,521 copying biorefineries/corn/utils.py -> build/lib/biorefineries/corn 2025-06-05T05:40:44,523 copying biorefineries/corn/tea.py -> build/lib/biorefineries/corn 2025-06-05T05:40:44,526 copying biorefineries/corn/README.md -> build/lib/biorefineries/corn 2025-06-05T05:40:44,529 copying biorefineries/corn/chemicals.py -> build/lib/biorefineries/corn 2025-06-05T05:40:44,531 copying biorefineries/corn/__init__.py -> build/lib/biorefineries/corn 2025-06-05T05:40:44,534 copying biorefineries/corn/biorefinery.py -> build/lib/biorefineries/corn 2025-06-05T05:40:44,536 copying biorefineries/corn/process_settings.py -> build/lib/biorefineries/corn 2025-06-05T05:40:44,539 copying biorefineries/corn/units.py -> build/lib/biorefineries/corn 2025-06-05T05:40:44,542 copying biorefineries/corn/systems.py -> build/lib/biorefineries/corn 2025-06-05T05:40:44,545 creating build/lib/biorefineries/lactic 2025-06-05T05:40:44,546 copying biorefineries/lactic/utils.py -> build/lib/biorefineries/lactic 2025-06-05T05:40:44,549 copying biorefineries/lactic/_profile.py -> build/lib/biorefineries/lactic 2025-06-05T05:40:44,552 copying biorefineries/lactic/_process_settings.py -> build/lib/biorefineries/lactic 2025-06-05T05:40:44,555 copying biorefineries/lactic/__init__.py -> build/lib/biorefineries/lactic 2025-06-05T05:40:44,558 copying biorefineries/lactic/_chemicals.py -> build/lib/biorefineries/lactic 2025-06-05T05:40:44,561 copying biorefineries/lactic/models.py -> build/lib/biorefineries/lactic 2025-06-05T05:40:44,564 copying biorefineries/lactic/README.rst -> build/lib/biorefineries/lactic 2025-06-05T05:40:44,567 copying biorefineries/lactic/_units.py -> build/lib/biorefineries/lactic 2025-06-05T05:40:44,571 copying biorefineries/lactic/_processes.py -> build/lib/biorefineries/lactic 2025-06-05T05:40:44,575 copying biorefineries/lactic/_tea.py -> build/lib/biorefineries/lactic 2025-06-05T05:40:44,577 copying biorefineries/lactic/systems.py -> build/lib/biorefineries/lactic 2025-06-05T05:40:44,580 creating build/lib/biorefineries/lactic/analyses 2025-06-05T05:40:44,581 copying biorefineries/lactic/analyses/2_fermentation_TRY.py -> build/lib/biorefineries/lactic/analyses 2025-06-05T05:40:44,584 copying biorefineries/lactic/analyses/3_feedstock_carb-price.py -> build/lib/biorefineries/lactic/analyses 2025-06-05T05:40:44,587 copying biorefineries/lactic/analyses/1_uncertainties.py -> build/lib/biorefineries/lactic/analyses 2025-06-05T05:40:44,590 creating build/lib/biorefineries/sugarcane 2025-06-05T05:40:44,592 copying biorefineries/sugarcane/_process_settings.py -> build/lib/biorefineries/sugarcane 2025-06-05T05:40:44,594 copying biorefineries/sugarcane/__init__.py -> build/lib/biorefineries/sugarcane 2025-06-05T05:40:44,597 copying biorefineries/sugarcane/_chemicals.py -> build/lib/biorefineries/sugarcane 2025-06-05T05:40:44,599 copying biorefineries/sugarcane/model.py -> build/lib/biorefineries/sugarcane 2025-06-05T05:40:44,601 copying biorefineries/sugarcane/README.rst -> build/lib/biorefineries/sugarcane 2025-06-05T05:40:44,604 copying biorefineries/sugarcane/_tea.py -> build/lib/biorefineries/sugarcane 2025-06-05T05:40:44,606 copying biorefineries/sugarcane/systems.py -> build/lib/biorefineries/sugarcane 2025-06-05T05:40:44,609 creating build/lib/biorefineries/fattyalcohols 2025-06-05T05:40:44,610 copying biorefineries/fattyalcohols/utils.py -> build/lib/biorefineries/fattyalcohols 2025-06-05T05:40:44,613 copying biorefineries/fattyalcohols/_process_specifications.py -> build/lib/biorefineries/fattyalcohols 2025-06-05T05:40:44,615 copying biorefineries/fattyalcohols/__init__.py -> build/lib/biorefineries/fattyalcohols 2025-06-05T05:40:44,618 copying biorefineries/fattyalcohols/_fattyalcohol_production.py -> build/lib/biorefineries/fattyalcohols 2025-06-05T05:40:44,620 copying biorefineries/fattyalcohols/_system.py -> build/lib/biorefineries/fattyalcohols 2025-06-05T05:40:44,623 copying biorefineries/fattyalcohols/_chemicals.py -> build/lib/biorefineries/fattyalcohols 2025-06-05T05:40:44,625 copying biorefineries/fattyalcohols/README.rst -> build/lib/biorefineries/fattyalcohols 2025-06-05T05:40:44,627 copying biorefineries/fattyalcohols/chemicals.yaml -> build/lib/biorefineries/fattyalcohols 2025-06-05T05:40:44,630 copying biorefineries/fattyalcohols/_tea.py -> build/lib/biorefineries/fattyalcohols 2025-06-05T05:40:44,632 copying biorefineries/fattyalcohols/streams.yaml -> build/lib/biorefineries/fattyalcohols 2025-06-05T05:40:44,634 creating build/lib/biorefineries/fattyalcohols/units 2025-06-05T05:40:44,636 copying biorefineries/fattyalcohols/units/__init__.py -> build/lib/biorefineries/fattyalcohols/units 2025-06-05T05:40:44,639 copying biorefineries/fattyalcohols/units/fatty_alcohol_bioreactor.py -> build/lib/biorefineries/fattyalcohols/units 2025-06-05T05:40:44,641 copying biorefineries/fattyalcohols/units/slle_centrifuge.py -> build/lib/biorefineries/fattyalcohols/units 2025-06-05T05:40:44,644 creating build/lib/biorefineries/LAOs 2025-06-05T05:40:44,645 copying biorefineries/LAOs/utils.py -> build/lib/biorefineries/LAOs 2025-06-05T05:40:44,648 copying biorefineries/LAOs/analysis.ipynb -> build/lib/biorefineries/LAOs 2025-06-05T05:40:44,701 copying biorefineries/LAOs/_process_specifications.py -> build/lib/biorefineries/LAOs 2025-06-05T05:40:44,704 copying biorefineries/LAOs/__init__.py -> build/lib/biorefineries/LAOs 2025-06-05T05:40:44,706 copying biorefineries/LAOs/_system.py -> build/lib/biorefineries/LAOs 2025-06-05T05:40:44,709 copying biorefineries/LAOs/_chemicals.py -> build/lib/biorefineries/LAOs 2025-06-05T05:40:44,711 copying biorefineries/LAOs/README.rst -> build/lib/biorefineries/LAOs 2025-06-05T05:40:44,714 copying biorefineries/LAOs/chemicals.yaml -> build/lib/biorefineries/LAOs 2025-06-05T05:40:44,716 copying biorefineries/LAOs/_tea.py -> build/lib/biorefineries/LAOs 2025-06-05T05:40:44,719 copying biorefineries/LAOs/streams.yaml -> build/lib/biorefineries/LAOs 2025-06-05T05:40:44,721 creating build/lib/biorefineries/LAOs/units 2025-06-05T05:40:44,722 copying biorefineries/LAOs/units/adiabatic_fixedbed_gas_reactor.py -> build/lib/biorefineries/LAOs/units 2025-06-05T05:40:44,726 copying biorefineries/LAOs/units/__init__.py -> build/lib/biorefineries/LAOs/units 2025-06-05T05:40:44,729 copying biorefineries/LAOs/units/nitrogen_generation_package.py -> build/lib/biorefineries/LAOs/units 2025-06-05T05:40:44,733 copying biorefineries/LAOs/units/surge_tank.py -> build/lib/biorefineries/LAOs/units 2025-06-05T05:40:44,736 creating build/lib/biorefineries/abm 2025-06-05T05:40:44,738 copying biorefineries/abm/corn.py -> build/lib/biorefineries/abm 2025-06-05T05:40:44,742 copying biorefineries/abm/abm_yield_example.py -> build/lib/biorefineries/abm 2025-06-05T05:40:44,745 copying biorefineries/abm/cornstover.py -> build/lib/biorefineries/abm 2025-06-05T05:40:44,749 copying biorefineries/abm/breakdown.py -> build/lib/biorefineries/abm 2025-06-05T05:40:44,752 creating build/lib/biorefineries/gas_fermentation 2025-06-05T05:40:44,754 copying biorefineries/gas_fermentation/README.md -> build/lib/biorefineries/gas_fermentation 2025-06-05T05:40:44,757 copying biorefineries/gas_fermentation/chemicals.py -> build/lib/biorefineries/gas_fermentation 2025-06-05T05:40:44,761 copying biorefineries/gas_fermentation/__init__.py -> build/lib/biorefineries/gas_fermentation 2025-06-05T05:40:44,764 copying biorefineries/gas_fermentation/tests.py -> build/lib/biorefineries/gas_fermentation 2025-06-05T05:40:44,767 copying biorefineries/gas_fermentation/data.py -> build/lib/biorefineries/gas_fermentation 2025-06-05T05:40:44,771 copying biorefineries/gas_fermentation/biorefinery.py -> build/lib/biorefineries/gas_fermentation 2025-06-05T05:40:44,775 copying biorefineries/gas_fermentation/process_settings.py -> build/lib/biorefineries/gas_fermentation 2025-06-05T05:40:44,779 copying biorefineries/gas_fermentation/plots.py -> build/lib/biorefineries/gas_fermentation 2025-06-05T05:40:44,783 copying biorefineries/gas_fermentation/uncertainty.py -> build/lib/biorefineries/gas_fermentation 2025-06-05T05:40:44,787 copying biorefineries/gas_fermentation/units.py -> build/lib/biorefineries/gas_fermentation 2025-06-05T05:40:44,791 copying biorefineries/gas_fermentation/tables.py -> build/lib/biorefineries/gas_fermentation 2025-06-05T05:40:44,794 copying biorefineries/gas_fermentation/systems.py -> build/lib/biorefineries/gas_fermentation 2025-06-05T05:40:44,799 creating build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:44,800 copying biorefineries/gas_fermentation/images/spearman.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:44,812 copying biorefineries/gas_fermentation/images/dewatering_comparison_no_cc_kde.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:44,823 copying biorefineries/gas_fermentation/images/kde.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:44,831 copying biorefineries/gas_fermentation/images/dewatering_comparison_no_cc_kde.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:44,842 copying biorefineries/gas_fermentation/images/all fermentation-glucose growth_kde.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:44,849 copying biorefineries/gas_fermentation/images/AcOH_titer_AcEster_yield_contours.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:44,853 copying biorefineries/gas_fermentation/images/MSP_CI_kde.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:44,861 copying biorefineries/gas_fermentation/images/spearman_all fermentation-acetate growth.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:44,868 copying biorefineries/gas_fermentation/images/carbon_capture_comparison_no_dewatering_kde.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:44,877 copying biorefineries/gas_fermentation/images/impact_of_length_to_diameter.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:44,891 copying biorefineries/gas_fermentation/images/oleochemical_yield_contours.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:44,897 copying biorefineries/gas_fermentation/images/preliminary_flowsheet_with_auxiliaries.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:44,901 copying biorefineries/gas_fermentation/images/dewatering_comparison_cc_kde.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:44,910 copying biorefineries/gas_fermentation/images/impact.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:44,914 copying biorefineries/gas_fermentation/images/impact.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:44,918 copying biorefineries/gas_fermentation/images/carbon_capture_comparison_no_dewatering_kde.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:44,929 copying biorefineries/gas_fermentation/images/AcOH_contours.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:44,934 copying biorefineries/gas_fermentation/images/AcEster_contours.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:44,938 copying biorefineries/gas_fermentation/images/configuration_kde.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:44,948 copying biorefineries/gas_fermentation/images/monte_carlo_across_bioreactor_yield.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:44,958 copying biorefineries/gas_fermentation/images/spearman.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:44,961 copying biorefineries/gas_fermentation/images/H2_contours.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:44,965 copying biorefineries/gas_fermentation/images/sensitivity.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:44,969 copying biorefineries/gas_fermentation/images/montecarlo_absolute.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:44,974 copying biorefineries/gas_fermentation/images/montecarlo_absolute.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:44,980 copying biorefineries/gas_fermentation/images/uncertainty.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:44,983 copying biorefineries/gas_fermentation/images/sensitivity.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:44,986 copying biorefineries/gas_fermentation/images/preliminary_contour.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:44,990 copying biorefineries/gas_fermentation/images/configuration_kde.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:45,001 copying biorefineries/gas_fermentation/images/carbon_capture_comparison_dewatering_kde.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:45,048 copying biorefineries/gas_fermentation/images/spearman_all_scenarios_LCA.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:45,052 copying biorefineries/gas_fermentation/images/preliminary_flowsheet.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:45,055 copying biorefineries/gas_fermentation/images/monte_carlo_across_bioreactor_yield.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:45,058 copying biorefineries/gas_fermentation/images/spearman_all_scenarios_LCA.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:45,064 copying biorefineries/gas_fermentation/images/impact_of_length_to_diameter.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:45,068 copying biorefineries/gas_fermentation/images/AcOH_titer_AcEster_yield_contours.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:45,079 copying biorefineries/gas_fermentation/images/spearman_all_scenarios_TEA.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:45,083 copying biorefineries/gas_fermentation/images/all fermentation-glucose growth_kde.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:45,087 copying biorefineries/gas_fermentation/images/carbon_capture_comparison_dewatering_kde.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:45,095 copying biorefineries/gas_fermentation/images/kde.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:45,103 copying biorefineries/gas_fermentation/images/MSP_CI_kde.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:45,111 copying biorefineries/gas_fermentation/images/spearman_all_scenarios_TEA.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:45,120 copying biorefineries/gas_fermentation/images/oleochemical_yield_contours.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:45,143 copying biorefineries/gas_fermentation/images/dewatering_comparison_cc_kde.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:45,152 copying biorefineries/gas_fermentation/images/spearman_all fermentation-acetate growth.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-05T05:40:45,157 creating build/lib/biorefineries/gas_fermentation/results 2025-06-05T05:40:45,158 copying biorefineries/gas_fermentation/results/all fermentation-acetate growth_1000 -> build/lib/biorefineries/gas_fermentation/results 2025-06-05T05:40:45,163 copying biorefineries/gas_fermentation/results/MSP_GWP_oleochemical_yield.npy -> build/lib/biorefineries/gas_fermentation/results 2025-06-05T05:40:45,165 copying biorefineries/gas_fermentation/results/all fermentation-glucose growth_spearman.xlsx -> build/lib/biorefineries/gas_fermentation/results 2025-06-05T05:40:45,168 copying biorefineries/gas_fermentation/results/all fermentation-glucose growth_monte_carlo.xlsx -> build/lib/biorefineries/gas_fermentation/results 2025-06-05T05:40:45,176 copying biorefineries/gas_fermentation/results/all fermentation-acetate growth_spearman.xlsx -> build/lib/biorefineries/gas_fermentation/results 2025-06-05T05:40:45,179 copying biorefineries/gas_fermentation/results/all fermentation-glucose growth_monte_carlo_across_bioreactor_yield.xlsx -> build/lib/biorefineries/gas_fermentation/results 2025-06-05T05:40:45,185 copying biorefineries/gas_fermentation/results/all fermentation-acetate growth_monte_carlo.xlsx -> build/lib/biorefineries/gas_fermentation/results 2025-06-05T05:40:45,194 copying biorefineries/gas_fermentation/results/all fermentation-glucose growth_1000 -> build/lib/biorefineries/gas_fermentation/results 2025-06-05T05:40:45,200 creating build/lib/biorefineries/gas_fermentation/notebooks 2025-06-05T05:40:45,201 copying biorefineries/gas_fermentation/notebooks/arpa_e_project.py -> build/lib/biorefineries/gas_fermentation/notebooks 2025-06-05T05:40:45,204 creating build/lib/biorefineries/tests 2025-06-05T05:40:45,205 copying biorefineries/tests/run_readmes.py -> build/lib/biorefineries/tests 2025-06-05T05:40:45,207 copying biorefineries/tests/__init__.py -> build/lib/biorefineries/tests 2025-06-05T05:40:45,209 copying biorefineries/tests/test_biorefineries.py -> build/lib/biorefineries/tests 2025-06-05T05:40:45,239 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-06-05T05:40:45,239 !! 2025-06-05T05:40:45,241 ******************************************************************************** 2025-06-05T05:40:45,241 Please avoid running ``setup.py`` directly. 2025-06-05T05:40:45,241 Instead, use pypa/build, pypa/installer or other 2025-06-05T05:40:45,242 standards-based tools. 2025-06-05T05:40:45,243 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-06-05T05:40:45,244 or your builds will no longer be supported. 2025-06-05T05:40:45,245 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-06-05T05:40:45,245 ******************************************************************************** 2025-06-05T05:40:45,246 !! 2025-06-05T05:40:45,247 self.initialize_options() 2025-06-05T05:40:45,268 installing to build/bdist.linux-armv7l/wheel 2025-06-05T05:40:45,269 running install 2025-06-05T05:40:45,293 running install_lib 2025-06-05T05:40:45,319 creating build/bdist.linux-armv7l/wheel 2025-06-05T05:40:45,322 creating build/bdist.linux-armv7l/wheel/biorefineries 2025-06-05T05:40:45,323 creating build/bdist.linux-armv7l/wheel/biorefineries/abm 2025-06-05T05:40:45,324 copying build/lib/biorefineries/abm/corn.py -> build/bdist.linux-armv7l/wheel/./biorefineries/abm 2025-06-05T05:40:45,327 copying build/lib/biorefineries/abm/abm_yield_example.py -> build/bdist.linux-armv7l/wheel/./biorefineries/abm 2025-06-05T05:40:45,329 copying build/lib/biorefineries/abm/cornstover.py -> build/bdist.linux-armv7l/wheel/./biorefineries/abm 2025-06-05T05:40:45,331 copying build/lib/biorefineries/abm/breakdown.py -> build/bdist.linux-armv7l/wheel/./biorefineries/abm 2025-06-05T05:40:45,333 creating build/bdist.linux-armv7l/wheel/biorefineries/tests 2025-06-05T05:40:45,334 copying build/lib/biorefineries/tests/run_readmes.py -> build/bdist.linux-armv7l/wheel/./biorefineries/tests 2025-06-05T05:40:45,337 copying build/lib/biorefineries/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/tests 2025-06-05T05:40:45,338 copying build/lib/biorefineries/tests/test_biorefineries.py -> build/bdist.linux-armv7l/wheel/./biorefineries/tests 2025-06-05T05:40:45,342 creating build/bdist.linux-armv7l/wheel/biorefineries/lipidcane 2025-06-05T05:40:45,343 copying build/lib/biorefineries/lipidcane/_feedstock_analysis.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-06-05T05:40:45,345 copying build/lib/biorefineries/lipidcane/_process_settings.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-06-05T05:40:45,347 copying build/lib/biorefineries/lipidcane/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-06-05T05:40:45,349 copying build/lib/biorefineries/lipidcane/_system.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-06-05T05:40:45,351 copying build/lib/biorefineries/lipidcane/_chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-06-05T05:40:45,353 copying build/lib/biorefineries/lipidcane/model.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-06-05T05:40:45,356 copying build/lib/biorefineries/lipidcane/_plot_spearman.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-06-05T05:40:45,358 copying build/lib/biorefineries/lipidcane/_webapp_model.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-06-05T05:40:45,360 copying build/lib/biorefineries/lipidcane/README.rst -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-06-05T05:40:45,362 copying build/lib/biorefineries/lipidcane/sankey_plot.ipynb -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-06-05T05:40:45,420 copying build/lib/biorefineries/lipidcane/_plot_uncertainty.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-06-05T05:40:45,422 copying build/lib/biorefineries/lipidcane/_tea.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-06-05T05:40:45,424 copying build/lib/biorefineries/lipidcane/_analysis.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-06-05T05:40:45,427 creating build/bdist.linux-armv7l/wheel/biorefineries/cane 2025-06-05T05:40:45,428 copying build/lib/biorefineries/cane/evaluation.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-05T05:40:45,430 copying build/lib/biorefineries/cane/README.md -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-05T05:40:45,433 copying build/lib/biorefineries/cane/uncertainty_plots.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-05T05:40:45,437 copying build/lib/biorefineries/cane/feature_mockups.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-05T05:40:45,439 copying build/lib/biorefineries/cane/chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-05T05:40:45,442 copying build/lib/biorefineries/cane/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-05T05:40:45,443 copying build/lib/biorefineries/cane/streams.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-05T05:40:45,446 creating build/bdist.linux-armv7l/wheel/biorefineries/cane/data 2025-06-05T05:40:45,447 copying build/lib/biorefineries/cane/data/RIN_prices_2022.csv -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/data 2025-06-05T05:40:45,456 copying build/lib/biorefineries/cane/data/cane_composition_data_full.xlsx -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/data 2025-06-05T05:40:45,461 copying build/lib/biorefineries/cane/data/RIN_prices_2023.csv -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/data 2025-06-05T05:40:45,468 copying build/lib/biorefineries/cane/data/price_distributions_2022.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/data 2025-06-05T05:40:45,471 copying build/lib/biorefineries/cane/data/cane_composition_data.xlsx -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/data 2025-06-05T05:40:45,473 copying build/lib/biorefineries/cane/data/microbial_oil_baseline.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/data 2025-06-05T05:40:45,475 copying build/lib/biorefineries/cane/data/price_distributions_2023.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/data 2025-06-05T05:40:45,477 copying build/lib/biorefineries/cane/data/lca_characterization_factors.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/data 2025-06-05T05:40:45,479 copying build/lib/biorefineries/cane/biorefinery.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-05T05:40:45,483 copying build/lib/biorefineries/cane/process_settings.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-05T05:40:45,486 copying build/lib/biorefineries/cane/configurations_biomass_yield_analysis.npy -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-05T05:40:45,489 copying build/lib/biorefineries/cane/units.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-05T05:40:45,491 copying build/lib/biorefineries/cane/rename_soon.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-05T05:40:45,493 copying build/lib/biorefineries/cane/oil_extraction.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-05T05:40:45,495 copying build/lib/biorefineries/cane/tables.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-05T05:40:45,497 copying build/lib/biorefineries/cane/contour_plots.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-05T05:40:45,500 copying build/lib/biorefineries/cane/results.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-05T05:40:45,504 creating build/bdist.linux-armv7l/wheel/biorefineries/cane/systems 2025-06-05T05:40:45,505 copying build/lib/biorefineries/cane/systems/juicing.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-06-05T05:40:45,507 copying build/lib/biorefineries/cane/systems/lipid_extraction.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-06-05T05:40:45,510 creating build/bdist.linux-armv7l/wheel/biorefineries/cane/systems/oilcane 2025-06-05T05:40:45,511 copying build/lib/biorefineries/cane/systems/oilcane/cellulosic_biodiesel_ethanol.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems/oilcane 2025-06-05T05:40:45,513 copying build/lib/biorefineries/cane/systems/oilcane/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems/oilcane 2025-06-05T05:40:45,515 copying build/lib/biorefineries/cane/systems/oilcane/biodiesel_ethanol.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems/oilcane 2025-06-05T05:40:45,517 copying build/lib/biorefineries/cane/systems/oilcane/cellulosic_crude_oil_ethanol.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems/oilcane 2025-06-05T05:40:45,519 copying build/lib/biorefineries/cane/systems/oilcane/crude_oil_ethanol.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems/oilcane 2025-06-05T05:40:45,521 copying build/lib/biorefineries/cane/systems/cellulosic_biodiesel.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-06-05T05:40:45,524 copying build/lib/biorefineries/cane/systems/pretreatment.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-06-05T05:40:45,526 copying build/lib/biorefineries/cane/systems/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-06-05T05:40:45,528 copying build/lib/biorefineries/cane/systems/biodiesel.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-06-05T05:40:45,530 copying build/lib/biorefineries/cane/systems/biodiesel_actag.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-06-05T05:40:45,533 copying build/lib/biorefineries/cane/systems/sugar.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-06-05T05:40:45,536 copying build/lib/biorefineries/cane/systems/bagasse.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-06-05T05:40:45,538 copying build/lib/biorefineries/cane/systems/cellulosic_biodiesel_actag.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-06-05T05:40:45,541 copying build/lib/biorefineries/cane/systems/fermentation.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-06-05T05:40:45,545 creating build/bdist.linux-armv7l/wheel/biorefineries/cane/systems/sugarcane 2025-06-05T05:40:45,546 copying build/lib/biorefineries/cane/systems/sugarcane/sugar_ethanol.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems/sugarcane 2025-06-05T05:40:45,549 copying build/lib/biorefineries/cane/systems/sugarcane/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems/sugarcane 2025-06-05T05:40:45,551 copying build/lib/biorefineries/cane/systems/sugarcane/cellulosic_ethanol.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems/sugarcane 2025-06-05T05:40:45,554 copying build/lib/biorefineries/cane/systems/sugarcane/ethanol.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems/sugarcane 2025-06-05T05:40:45,557 copying build/lib/biorefineries/cane/systems/lipidcane.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-06-05T05:40:45,560 copying build/lib/biorefineries/cane/composition.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-05T05:40:45,563 copying build/lib/biorefineries/cane/parse_configuration.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-05T05:40:45,566 creating build/bdist.linux-armv7l/wheel/biorefineries/corn 2025-06-05T05:40:45,567 copying build/lib/biorefineries/corn/utils.py -> build/bdist.linux-armv7l/wheel/./biorefineries/corn 2025-06-05T05:40:45,570 copying build/lib/biorefineries/corn/tea.py -> build/bdist.linux-armv7l/wheel/./biorefineries/corn 2025-06-05T05:40:45,572 copying build/lib/biorefineries/corn/README.md -> build/bdist.linux-armv7l/wheel/./biorefineries/corn 2025-06-05T05:40:45,575 copying build/lib/biorefineries/corn/chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/corn 2025-06-05T05:40:45,577 copying build/lib/biorefineries/corn/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/corn 2025-06-05T05:40:45,580 copying build/lib/biorefineries/corn/biorefinery.py -> build/bdist.linux-armv7l/wheel/./biorefineries/corn 2025-06-05T05:40:45,582 copying build/lib/biorefineries/corn/process_settings.py -> build/bdist.linux-armv7l/wheel/./biorefineries/corn 2025-06-05T05:40:45,585 copying build/lib/biorefineries/corn/units.py -> build/bdist.linux-armv7l/wheel/./biorefineries/corn 2025-06-05T05:40:45,587 copying build/lib/biorefineries/corn/systems.py -> build/bdist.linux-armv7l/wheel/./biorefineries/corn 2025-06-05T05:40:45,591 creating build/bdist.linux-armv7l/wheel/biorefineries/cellulosic 2025-06-05T05:40:45,593 copying build/lib/biorefineries/cellulosic/chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic 2025-06-05T05:40:45,596 copying build/lib/biorefineries/cellulosic/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic 2025-06-05T05:40:45,598 copying build/lib/biorefineries/cellulosic/streams.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic 2025-06-05T05:40:45,600 copying build/lib/biorefineries/cellulosic/biorefinery.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic 2025-06-05T05:40:45,603 copying build/lib/biorefineries/cellulosic/process_settings.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic 2025-06-05T05:40:45,605 copying build/lib/biorefineries/cellulosic/units.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic 2025-06-05T05:40:45,609 creating build/bdist.linux-armv7l/wheel/biorefineries/cellulosic/systems 2025-06-05T05:40:45,611 creating build/bdist.linux-armv7l/wheel/biorefineries/cellulosic/systems/pretreatment 2025-06-05T05:40:45,613 copying build/lib/biorefineries/cellulosic/systems/pretreatment/ammonia_fiber_expansion.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems/pretreatment 2025-06-05T05:40:45,616 copying build/lib/biorefineries/cellulosic/systems/pretreatment/hot_water.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems/pretreatment 2025-06-05T05:40:45,618 copying build/lib/biorefineries/cellulosic/systems/pretreatment/alkaline.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems/pretreatment 2025-06-05T05:40:45,620 copying build/lib/biorefineries/cellulosic/systems/pretreatment/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems/pretreatment 2025-06-05T05:40:45,623 copying build/lib/biorefineries/cellulosic/systems/pretreatment/dilute_acid.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems/pretreatment 2025-06-05T05:40:45,626 copying build/lib/biorefineries/cellulosic/systems/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems 2025-06-05T05:40:45,628 copying build/lib/biorefineries/cellulosic/systems/cellulosic_ethanol.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems 2025-06-05T05:40:45,631 creating build/bdist.linux-armv7l/wheel/biorefineries/cellulosic/systems/fermentation 2025-06-05T05:40:45,632 copying build/lib/biorefineries/cellulosic/systems/fermentation/saccharification.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems/fermentation 2025-06-05T05:40:45,634 copying build/lib/biorefineries/cellulosic/systems/fermentation/integrated_bioprocess.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems/fermentation 2025-06-05T05:40:45,637 copying build/lib/biorefineries/cellulosic/systems/fermentation/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems/fermentation 2025-06-05T05:40:45,638 copying build/lib/biorefineries/cellulosic/systems/fermentation/general_interface.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems/fermentation 2025-06-05T05:40:45,641 copying build/lib/biorefineries/cellulosic/systems/fermentation/cofermentation.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems/fermentation 2025-06-05T05:40:45,643 copying build/lib/biorefineries/cellulosic/systems/fermentation/simultaneous_saccharification_cofermentation.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems/fermentation 2025-06-05T05:40:45,646 creating build/bdist.linux-armv7l/wheel/biorefineries/lactic 2025-06-05T05:40:45,647 copying build/lib/biorefineries/lactic/utils.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic 2025-06-05T05:40:45,650 creating build/bdist.linux-armv7l/wheel/biorefineries/lactic/analyses 2025-06-05T05:40:45,651 copying build/lib/biorefineries/lactic/analyses/2_fermentation_TRY.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic/analyses 2025-06-05T05:40:45,653 copying build/lib/biorefineries/lactic/analyses/3_feedstock_carb-price.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic/analyses 2025-06-05T05:40:45,655 copying build/lib/biorefineries/lactic/analyses/1_uncertainties.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic/analyses 2025-06-05T05:40:45,658 copying build/lib/biorefineries/lactic/_profile.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic 2025-06-05T05:40:45,660 copying build/lib/biorefineries/lactic/_process_settings.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic 2025-06-05T05:40:45,662 copying build/lib/biorefineries/lactic/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic 2025-06-05T05:40:45,664 copying build/lib/biorefineries/lactic/_chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic 2025-06-05T05:40:45,667 copying build/lib/biorefineries/lactic/models.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic 2025-06-05T05:40:45,669 copying build/lib/biorefineries/lactic/README.rst -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic 2025-06-05T05:40:45,671 copying build/lib/biorefineries/lactic/_units.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic 2025-06-05T05:40:45,675 copying build/lib/biorefineries/lactic/_processes.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic 2025-06-05T05:40:45,678 copying build/lib/biorefineries/lactic/_tea.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic 2025-06-05T05:40:45,680 copying build/lib/biorefineries/lactic/systems.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic 2025-06-05T05:40:45,682 creating build/bdist.linux-armv7l/wheel/biorefineries/oilcane 2025-06-05T05:40:45,684 copying build/lib/biorefineries/oilcane/utils.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-05T05:40:45,686 copying build/lib/biorefineries/oilcane/_tables.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-05T05:40:45,689 copying build/lib/biorefineries/oilcane/README.md -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-05T05:40:45,691 copying build/lib/biorefineries/oilcane/_contour_plots.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-05T05:40:45,694 copying build/lib/biorefineries/oilcane/_feature_mockups.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-05T05:40:45,696 copying build/lib/biorefineries/oilcane/_evaluation.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-05T05:40:45,698 copying build/lib/biorefineries/oilcane/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-05T05:40:45,700 copying build/lib/biorefineries/oilcane/_chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-05T05:40:45,702 copying build/lib/biorefineries/oilcane/lca_benchmarks.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-05T05:40:45,704 copying build/lib/biorefineries/oilcane/_parse_configuration.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-05T05:40:45,705 copying build/lib/biorefineries/oilcane/sankey_energy.ipynb -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-05T05:40:45,785 copying build/lib/biorefineries/oilcane/_load_data.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-05T05:40:45,787 copying build/lib/biorefineries/oilcane/webapp_model.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-05T05:40:45,789 copying build/lib/biorefineries/oilcane/sankey_plot.ipynb -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-05T05:40:45,792 copying build/lib/biorefineries/oilcane/units.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-05T05:40:45,794 copying build/lib/biorefineries/oilcane/_uncertainty_plots.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-05T05:40:45,798 copying build/lib/biorefineries/oilcane/_line_plots.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-05T05:40:45,800 copying build/lib/biorefineries/oilcane/_tea.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-05T05:40:45,802 copying build/lib/biorefineries/oilcane/systems.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-05T05:40:45,804 creating build/bdist.linux-armv7l/wheel/biorefineries/gas_fermentation 2025-06-05T05:40:45,805 copying build/lib/biorefineries/gas_fermentation/README.md -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation 2025-06-05T05:40:45,808 creating build/bdist.linux-armv7l/wheel/biorefineries/gas_fermentation/results 2025-06-05T05:40:45,809 copying build/lib/biorefineries/gas_fermentation/results/all fermentation-acetate growth_1000 -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/results 2025-06-05T05:40:45,814 copying build/lib/biorefineries/gas_fermentation/results/MSP_GWP_oleochemical_yield.npy -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/results 2025-06-05T05:40:45,816 copying build/lib/biorefineries/gas_fermentation/results/all fermentation-glucose growth_spearman.xlsx -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/results 2025-06-05T05:40:45,818 copying build/lib/biorefineries/gas_fermentation/results/all fermentation-glucose growth_monte_carlo.xlsx -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/results 2025-06-05T05:40:45,826 copying build/lib/biorefineries/gas_fermentation/results/all fermentation-acetate growth_spearman.xlsx -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/results 2025-06-05T05:40:45,829 copying build/lib/biorefineries/gas_fermentation/results/all fermentation-glucose growth_monte_carlo_across_bioreactor_yield.xlsx -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/results 2025-06-05T05:40:45,833 copying build/lib/biorefineries/gas_fermentation/results/all fermentation-acetate growth_monte_carlo.xlsx -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/results 2025-06-05T05:40:45,841 copying build/lib/biorefineries/gas_fermentation/results/all fermentation-glucose growth_1000 -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/results 2025-06-05T05:40:45,849 copying build/lib/biorefineries/gas_fermentation/chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation 2025-06-05T05:40:45,851 copying build/lib/biorefineries/gas_fermentation/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation 2025-06-05T05:40:45,852 copying build/lib/biorefineries/gas_fermentation/tests.py -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation 2025-06-05T05:40:45,854 copying build/lib/biorefineries/gas_fermentation/data.py -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation 2025-06-05T05:40:45,856 copying build/lib/biorefineries/gas_fermentation/biorefinery.py -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation 2025-06-05T05:40:45,859 creating build/bdist.linux-armv7l/wheel/biorefineries/gas_fermentation/notebooks 2025-06-05T05:40:45,860 copying build/lib/biorefineries/gas_fermentation/notebooks/arpa_e_project.py -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/notebooks 2025-06-05T05:40:45,862 copying build/lib/biorefineries/gas_fermentation/process_settings.py -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation 2025-06-05T05:40:45,864 copying build/lib/biorefineries/gas_fermentation/plots.py -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation 2025-06-05T05:40:45,866 copying build/lib/biorefineries/gas_fermentation/uncertainty.py -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation 2025-06-05T05:40:45,869 copying build/lib/biorefineries/gas_fermentation/units.py -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation 2025-06-05T05:40:45,873 creating build/bdist.linux-armv7l/wheel/biorefineries/gas_fermentation/images 2025-06-05T05:40:45,874 copying build/lib/biorefineries/gas_fermentation/images/spearman.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:45,883 copying build/lib/biorefineries/gas_fermentation/images/dewatering_comparison_no_cc_kde.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:45,891 copying build/lib/biorefineries/gas_fermentation/images/kde.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:45,899 copying build/lib/biorefineries/gas_fermentation/images/dewatering_comparison_no_cc_kde.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:45,910 copying build/lib/biorefineries/gas_fermentation/images/all fermentation-glucose growth_kde.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:45,917 copying build/lib/biorefineries/gas_fermentation/images/AcOH_titer_AcEster_yield_contours.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:45,921 copying build/lib/biorefineries/gas_fermentation/images/MSP_CI_kde.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:45,929 copying build/lib/biorefineries/gas_fermentation/images/spearman_all fermentation-acetate growth.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:45,937 copying build/lib/biorefineries/gas_fermentation/images/carbon_capture_comparison_no_dewatering_kde.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:45,947 copying build/lib/biorefineries/gas_fermentation/images/impact_of_length_to_diameter.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:45,959 copying build/lib/biorefineries/gas_fermentation/images/oleochemical_yield_contours.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:45,964 copying build/lib/biorefineries/gas_fermentation/images/preliminary_flowsheet_with_auxiliaries.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:45,967 copying build/lib/biorefineries/gas_fermentation/images/dewatering_comparison_cc_kde.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:45,974 copying build/lib/biorefineries/gas_fermentation/images/impact.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:45,978 copying build/lib/biorefineries/gas_fermentation/images/impact.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:45,981 copying build/lib/biorefineries/gas_fermentation/images/carbon_capture_comparison_no_dewatering_kde.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:45,989 copying build/lib/biorefineries/gas_fermentation/images/AcOH_contours.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:45,992 copying build/lib/biorefineries/gas_fermentation/images/AcEster_contours.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:45,996 copying build/lib/biorefineries/gas_fermentation/images/configuration_kde.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:46,003 copying build/lib/biorefineries/gas_fermentation/images/monte_carlo_across_bioreactor_yield.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:46,011 copying build/lib/biorefineries/gas_fermentation/images/spearman.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:46,014 copying build/lib/biorefineries/gas_fermentation/images/H2_contours.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:46,018 copying build/lib/biorefineries/gas_fermentation/images/sensitivity.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:46,021 copying build/lib/biorefineries/gas_fermentation/images/montecarlo_absolute.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:46,026 copying build/lib/biorefineries/gas_fermentation/images/montecarlo_absolute.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:46,032 copying build/lib/biorefineries/gas_fermentation/images/uncertainty.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:46,035 copying build/lib/biorefineries/gas_fermentation/images/sensitivity.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:46,038 copying build/lib/biorefineries/gas_fermentation/images/preliminary_contour.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:46,041 copying build/lib/biorefineries/gas_fermentation/images/configuration_kde.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:46,051 copying build/lib/biorefineries/gas_fermentation/images/carbon_capture_comparison_dewatering_kde.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:46,059 copying build/lib/biorefineries/gas_fermentation/images/spearman_all_scenarios_LCA.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:46,062 copying build/lib/biorefineries/gas_fermentation/images/preliminary_flowsheet.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:46,066 copying build/lib/biorefineries/gas_fermentation/images/monte_carlo_across_bioreactor_yield.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:46,069 copying build/lib/biorefineries/gas_fermentation/images/spearman_all_scenarios_LCA.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:46,078 copying build/lib/biorefineries/gas_fermentation/images/impact_of_length_to_diameter.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:46,082 copying build/lib/biorefineries/gas_fermentation/images/AcOH_titer_AcEster_yield_contours.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:46,093 copying build/lib/biorefineries/gas_fermentation/images/spearman_all_scenarios_TEA.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:46,096 copying build/lib/biorefineries/gas_fermentation/images/all fermentation-glucose growth_kde.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:46,101 copying build/lib/biorefineries/gas_fermentation/images/carbon_capture_comparison_dewatering_kde.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:46,109 copying build/lib/biorefineries/gas_fermentation/images/kde.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:46,117 copying build/lib/biorefineries/gas_fermentation/images/MSP_CI_kde.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:46,124 copying build/lib/biorefineries/gas_fermentation/images/spearman_all_scenarios_TEA.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:46,131 copying build/lib/biorefineries/gas_fermentation/images/oleochemical_yield_contours.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:46,149 copying build/lib/biorefineries/gas_fermentation/images/dewatering_comparison_cc_kde.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:46,161 copying build/lib/biorefineries/gas_fermentation/images/spearman_all fermentation-acetate growth.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-05T05:40:46,165 copying build/lib/biorefineries/gas_fermentation/tables.py -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation 2025-06-05T05:40:46,168 copying build/lib/biorefineries/gas_fermentation/systems.py -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation 2025-06-05T05:40:46,171 copying build/lib/biorefineries/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries 2025-06-05T05:40:46,174 creating build/bdist.linux-armv7l/wheel/biorefineries/ethanol 2025-06-05T05:40:46,175 copying build/lib/biorefineries/ethanol/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/ethanol 2025-06-05T05:40:46,177 copying build/lib/biorefineries/ethanol/streams.py -> build/bdist.linux-armv7l/wheel/./biorefineries/ethanol 2025-06-05T05:40:46,180 copying build/lib/biorefineries/ethanol/systems.py -> build/bdist.linux-armv7l/wheel/./biorefineries/ethanol 2025-06-05T05:40:46,183 creating build/bdist.linux-armv7l/wheel/biorefineries/biodiesel 2025-06-05T05:40:46,184 copying build/lib/biorefineries/biodiesel/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/biodiesel 2025-06-05T05:40:46,187 copying build/lib/biorefineries/biodiesel/streams.py -> build/bdist.linux-armv7l/wheel/./biorefineries/biodiesel 2025-06-05T05:40:46,189 creating build/bdist.linux-armv7l/wheel/biorefineries/biodiesel/units 2025-06-05T05:40:46,191 copying build/lib/biorefineries/biodiesel/units/transesterification.py -> build/bdist.linux-armv7l/wheel/./biorefineries/biodiesel/units 2025-06-05T05:40:46,193 copying build/lib/biorefineries/biodiesel/units/glycerolysis_reactor.py -> build/bdist.linux-armv7l/wheel/./biorefineries/biodiesel/units 2025-06-05T05:40:46,196 copying build/lib/biorefineries/biodiesel/units/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/biodiesel/units 2025-06-05T05:40:46,198 copying build/lib/biorefineries/biodiesel/units/skimming_tank.py -> build/bdist.linux-armv7l/wheel/./biorefineries/biodiesel/units 2025-06-05T05:40:46,201 copying build/lib/biorefineries/biodiesel/systems.py -> build/bdist.linux-armv7l/wheel/./biorefineries/biodiesel 2025-06-05T05:40:46,204 creating build/bdist.linux-armv7l/wheel/biorefineries/tea 2025-06-05T05:40:46,206 copying build/lib/biorefineries/tea/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/tea 2025-06-05T05:40:46,208 copying build/lib/biorefineries/tea/conventional_ethanol_tea.py -> build/bdist.linux-armv7l/wheel/./biorefineries/tea 2025-06-05T05:40:46,211 copying build/lib/biorefineries/tea/cellulosic_ethanol_tea.py -> build/bdist.linux-armv7l/wheel/./biorefineries/tea 2025-06-05T05:40:46,214 creating build/bdist.linux-armv7l/wheel/biorefineries/cornstover 2025-06-05T05:40:46,216 copying build/lib/biorefineries/cornstover/_plot_single_point.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-05T05:40:46,219 copying build/lib/biorefineries/cornstover/_process_settings.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-05T05:40:46,221 copying build/lib/biorefineries/cornstover/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-05T05:40:46,223 copying build/lib/biorefineries/cornstover/_chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-05T05:40:46,226 copying build/lib/biorefineries/cornstover/model.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-05T05:40:46,228 copying build/lib/biorefineries/cornstover/_legacy_code.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-05T05:40:46,231 copying build/lib/biorefineries/cornstover/_plot_spearman.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-05T05:40:46,233 copying build/lib/biorefineries/cornstover/_sankey.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-05T05:40:46,235 copying build/lib/biorefineries/cornstover/README.rst -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-05T05:40:46,238 copying build/lib/biorefineries/cornstover/webapp_model.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-05T05:40:46,241 copying build/lib/biorefineries/cornstover/_plot_bars.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-05T05:40:46,244 copying build/lib/biorefineries/cornstover/units.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-05T05:40:46,246 copying build/lib/biorefineries/cornstover/_plot_uncertainty.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-05T05:40:46,249 copying build/lib/biorefineries/cornstover/_switchgrass.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-05T05:40:46,251 copying build/lib/biorefineries/cornstover/_tea.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-05T05:40:46,253 copying build/lib/biorefineries/cornstover/_analysis.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-05T05:40:46,255 copying build/lib/biorefineries/cornstover/systems.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-05T05:40:46,258 creating build/bdist.linux-armv7l/wheel/biorefineries/LAOs 2025-06-05T05:40:46,260 copying build/lib/biorefineries/LAOs/utils.py -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs 2025-06-05T05:40:46,262 copying build/lib/biorefineries/LAOs/analysis.ipynb -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs 2025-06-05T05:40:46,325 copying build/lib/biorefineries/LAOs/_process_specifications.py -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs 2025-06-05T05:40:46,328 copying build/lib/biorefineries/LAOs/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs 2025-06-05T05:40:46,330 copying build/lib/biorefineries/LAOs/_system.py -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs 2025-06-05T05:40:46,332 copying build/lib/biorefineries/LAOs/_chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs 2025-06-05T05:40:46,334 copying build/lib/biorefineries/LAOs/README.rst -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs 2025-06-05T05:40:46,337 creating build/bdist.linux-armv7l/wheel/biorefineries/LAOs/units 2025-06-05T05:40:46,339 copying build/lib/biorefineries/LAOs/units/adiabatic_fixedbed_gas_reactor.py -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs/units 2025-06-05T05:40:46,341 copying build/lib/biorefineries/LAOs/units/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs/units 2025-06-05T05:40:46,343 copying build/lib/biorefineries/LAOs/units/nitrogen_generation_package.py -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs/units 2025-06-05T05:40:46,345 copying build/lib/biorefineries/LAOs/units/surge_tank.py -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs/units 2025-06-05T05:40:46,348 copying build/lib/biorefineries/LAOs/chemicals.yaml -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs 2025-06-05T05:40:46,350 copying build/lib/biorefineries/LAOs/_tea.py -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs 2025-06-05T05:40:46,352 copying build/lib/biorefineries/LAOs/streams.yaml -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs 2025-06-05T05:40:46,355 creating build/bdist.linux-armv7l/wheel/biorefineries/milk 2025-06-05T05:40:46,356 copying build/lib/biorefineries/milk/README.md -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-06-05T05:40:46,359 creating build/bdist.linux-armv7l/wheel/biorefineries/milk/results 2025-06-05T05:40:46,361 copying build/lib/biorefineries/milk/results/MSP_GWP_titer_productivity_AcEster_GlucoseMedia.npy -> build/bdist.linux-armv7l/wheel/./biorefineries/milk/results 2025-06-05T05:40:46,364 copying build/lib/biorefineries/milk/results/MSP_GWP_titer_productivity_AcEster_UFPermeate_GlucoseMedia.npy -> build/bdist.linux-armv7l/wheel/./biorefineries/milk/results 2025-06-05T05:40:46,367 copying build/lib/biorefineries/milk/results/MSP_GWP_titer_productivity_AcEster_UFPermeate.npy -> build/bdist.linux-armv7l/wheel/./biorefineries/milk/results 2025-06-05T05:40:46,370 copying build/lib/biorefineries/milk/chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-06-05T05:40:46,373 copying build/lib/biorefineries/milk/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-06-05T05:40:46,375 copying build/lib/biorefineries/milk/tests.py -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-06-05T05:40:46,378 copying build/lib/biorefineries/milk/data.py -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-06-05T05:40:46,381 copying build/lib/biorefineries/milk/biorefinery.py -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-06-05T05:40:46,384 copying build/lib/biorefineries/milk/process_settings.py -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-06-05T05:40:46,387 copying build/lib/biorefineries/milk/plots.py -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-06-05T05:40:46,390 copying build/lib/biorefineries/milk/uncertainty.py -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-06-05T05:40:46,394 copying build/lib/biorefineries/milk/units.py -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-06-05T05:40:46,396 copying build/lib/biorefineries/milk/GalactoOligoSaccharideProcess.xlsx -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-06-05T05:40:46,434 creating build/bdist.linux-armv7l/wheel/biorefineries/milk/images 2025-06-05T05:40:46,436 copying build/lib/biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate_GlucoseMedia.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/milk/images 2025-06-05T05:40:46,440 copying build/lib/biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/milk/images 2025-06-05T05:40:46,444 copying build/lib/biorefineries/milk/images/MSP_across_yield_productivity_GlucoseMedia.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/milk/images 2025-06-05T05:40:46,449 copying build/lib/biorefineries/milk/images/MSP_across_yield_productivity_GlucoseMedia.png -> build/bdist.linux-armv7l/wheel/./biorefineries/milk/images 2025-06-05T05:40:46,456 copying build/lib/biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate_GlucoseMedia.png -> build/bdist.linux-armv7l/wheel/./biorefineries/milk/images 2025-06-05T05:40:46,464 copying build/lib/biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate.png -> build/bdist.linux-armv7l/wheel/./biorefineries/milk/images 2025-06-05T05:40:46,472 copying build/lib/biorefineries/milk/systems.py -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-06-05T05:40:46,475 creating build/bdist.linux-armv7l/wheel/biorefineries/sugarcane 2025-06-05T05:40:46,476 copying build/lib/biorefineries/sugarcane/_process_settings.py -> build/bdist.linux-armv7l/wheel/./biorefineries/sugarcane 2025-06-05T05:40:46,478 copying build/lib/biorefineries/sugarcane/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/sugarcane 2025-06-05T05:40:46,480 copying build/lib/biorefineries/sugarcane/_chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/sugarcane 2025-06-05T05:40:46,481 copying build/lib/biorefineries/sugarcane/model.py -> build/bdist.linux-armv7l/wheel/./biorefineries/sugarcane 2025-06-05T05:40:46,483 copying build/lib/biorefineries/sugarcane/README.rst -> build/bdist.linux-armv7l/wheel/./biorefineries/sugarcane 2025-06-05T05:40:46,485 copying build/lib/biorefineries/sugarcane/_tea.py -> build/bdist.linux-armv7l/wheel/./biorefineries/sugarcane 2025-06-05T05:40:46,486 copying build/lib/biorefineries/sugarcane/systems.py -> build/bdist.linux-armv7l/wheel/./biorefineries/sugarcane 2025-06-05T05:40:46,489 creating build/bdist.linux-armv7l/wheel/biorefineries/fattyalcohols 2025-06-05T05:40:46,490 copying build/lib/biorefineries/fattyalcohols/utils.py -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols 2025-06-05T05:40:46,492 copying build/lib/biorefineries/fattyalcohols/_process_specifications.py -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols 2025-06-05T05:40:46,494 copying build/lib/biorefineries/fattyalcohols/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols 2025-06-05T05:40:46,495 copying build/lib/biorefineries/fattyalcohols/_fattyalcohol_production.py -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols 2025-06-05T05:40:46,498 copying build/lib/biorefineries/fattyalcohols/_system.py -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols 2025-06-05T05:40:46,499 copying build/lib/biorefineries/fattyalcohols/_chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols 2025-06-05T05:40:46,501 copying build/lib/biorefineries/fattyalcohols/README.rst -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols 2025-06-05T05:40:46,503 creating build/bdist.linux-armv7l/wheel/biorefineries/fattyalcohols/units 2025-06-05T05:40:46,505 copying build/lib/biorefineries/fattyalcohols/units/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols/units 2025-06-05T05:40:46,506 copying build/lib/biorefineries/fattyalcohols/units/fatty_alcohol_bioreactor.py -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols/units 2025-06-05T05:40:46,509 copying build/lib/biorefineries/fattyalcohols/units/slle_centrifuge.py -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols/units 2025-06-05T05:40:46,511 copying build/lib/biorefineries/fattyalcohols/chemicals.yaml -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols 2025-06-05T05:40:46,513 copying build/lib/biorefineries/fattyalcohols/_tea.py -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols 2025-06-05T05:40:46,514 copying build/lib/biorefineries/fattyalcohols/streams.yaml -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols 2025-06-05T05:40:46,516 running install_egg_info 2025-06-05T05:40:46,549 running egg_info 2025-06-05T05:40:46,575 writing biorefineries.egg-info/PKG-INFO 2025-06-05T05:40:46,578 writing dependency_links to biorefineries.egg-info/dependency_links.txt 2025-06-05T05:40:46,580 writing requirements to biorefineries.egg-info/requires.txt 2025-06-05T05:40:46,581 writing top-level names to biorefineries.egg-info/top_level.txt 2025-06-05T05:40:46,644 reading manifest file 'biorefineries.egg-info/SOURCES.txt' 2025-06-05T05:40:46,660 adding license file 'LICENSE.txt' 2025-06-05T05:40:46,674 writing manifest file 'biorefineries.egg-info/SOURCES.txt' 2025-06-05T05:40:46,676 Copying biorefineries.egg-info to build/bdist.linux-armv7l/wheel/./biorefineries-2.34.5-py3.11.egg-info 2025-06-05T05:40:46,686 running install_scripts 2025-06-05T05:40:46,697 creating build/bdist.linux-armv7l/wheel/biorefineries-2.34.5.dist-info/WHEEL 2025-06-05T05:40:46,700 creating '/tmp/pip-wheel-2xg0cb50/biorefineries-2.34.5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-06-05T05:40:46,702 adding 'biorefineries/__init__.py' 2025-06-05T05:40:46,704 adding 'biorefineries/LAOs/README.rst' 2025-06-05T05:40:46,706 adding 'biorefineries/LAOs/__init__.py' 2025-06-05T05:40:46,707 adding 'biorefineries/LAOs/_chemicals.py' 2025-06-05T05:40:46,709 adding 'biorefineries/LAOs/_process_specifications.py' 2025-06-05T05:40:46,711 adding 'biorefineries/LAOs/_system.py' 2025-06-05T05:40:46,712 adding 'biorefineries/LAOs/_tea.py' 2025-06-05T05:40:47,152 adding 'biorefineries/LAOs/analysis.ipynb' 2025-06-05T05:40:47,176 adding 'biorefineries/LAOs/chemicals.yaml' 2025-06-05T05:40:47,177 adding 'biorefineries/LAOs/streams.yaml' 2025-06-05T05:40:47,178 adding 'biorefineries/LAOs/utils.py' 2025-06-05T05:40:47,180 adding 'biorefineries/LAOs/units/__init__.py' 2025-06-05T05:40:47,181 adding 'biorefineries/LAOs/units/adiabatic_fixedbed_gas_reactor.py' 2025-06-05T05:40:47,182 adding 'biorefineries/LAOs/units/nitrogen_generation_package.py' 2025-06-05T05:40:47,184 adding 'biorefineries/LAOs/units/surge_tank.py' 2025-06-05T05:40:47,186 adding 'biorefineries/abm/abm_yield_example.py' 2025-06-05T05:40:47,187 adding 'biorefineries/abm/breakdown.py' 2025-06-05T05:40:47,188 adding 'biorefineries/abm/corn.py' 2025-06-05T05:40:47,190 adding 'biorefineries/abm/cornstover.py' 2025-06-05T05:40:47,192 adding 'biorefineries/biodiesel/__init__.py' 2025-06-05T05:40:47,193 adding 'biorefineries/biodiesel/streams.py' 2025-06-05T05:40:47,195 adding 'biorefineries/biodiesel/systems.py' 2025-06-05T05:40:47,197 adding 'biorefineries/biodiesel/units/__init__.py' 2025-06-05T05:40:47,199 adding 'biorefineries/biodiesel/units/glycerolysis_reactor.py' 2025-06-05T05:40:47,200 adding 'biorefineries/biodiesel/units/skimming_tank.py' 2025-06-05T05:40:47,201 adding 'biorefineries/biodiesel/units/transesterification.py' 2025-06-05T05:40:47,204 adding 'biorefineries/cane/README.md' 2025-06-05T05:40:47,205 adding 'biorefineries/cane/__init__.py' 2025-06-05T05:40:47,213 adding 'biorefineries/cane/biorefinery.py' 2025-06-05T05:40:47,216 adding 'biorefineries/cane/chemicals.py' 2025-06-05T05:40:47,218 adding 'biorefineries/cane/composition.py' 2025-06-05T05:40:47,223 adding 'biorefineries/cane/configurations_biomass_yield_analysis.npy' 2025-06-05T05:40:47,228 adding 'biorefineries/cane/contour_plots.py' 2025-06-05T05:40:47,231 adding 'biorefineries/cane/evaluation.py' 2025-06-05T05:40:47,233 adding 'biorefineries/cane/feature_mockups.py' 2025-06-05T05:40:47,234 adding 'biorefineries/cane/oil_extraction.py' 2025-06-05T05:40:47,236 adding 'biorefineries/cane/parse_configuration.py' 2025-06-05T05:40:47,237 adding 'biorefineries/cane/process_settings.py' 2025-06-05T05:40:47,238 adding 'biorefineries/cane/rename_soon.py' 2025-06-05T05:40:47,240 adding 'biorefineries/cane/results.py' 2025-06-05T05:40:47,242 adding 'biorefineries/cane/streams.py' 2025-06-05T05:40:47,243 adding 'biorefineries/cane/tables.py' 2025-06-05T05:40:47,251 adding 'biorefineries/cane/uncertainty_plots.py' 2025-06-05T05:40:47,253 adding 'biorefineries/cane/units.py' 2025-06-05T05:40:47,281 adding 'biorefineries/cane/data/RIN_prices_2022.csv' 2025-06-05T05:40:47,300 adding 'biorefineries/cane/data/RIN_prices_2023.csv' 2025-06-05T05:40:47,302 adding 'biorefineries/cane/data/cane_composition_data.xlsx' 2025-06-05T05:40:47,305 adding 'biorefineries/cane/data/cane_composition_data_full.xlsx' 2025-06-05T05:40:47,306 adding 'biorefineries/cane/data/lca_characterization_factors.py' 2025-06-05T05:40:47,308 adding 'biorefineries/cane/data/microbial_oil_baseline.py' 2025-06-05T05:40:47,309 adding 'biorefineries/cane/data/price_distributions_2022.py' 2025-06-05T05:40:47,311 adding 'biorefineries/cane/data/price_distributions_2023.py' 2025-06-05T05:40:47,313 adding 'biorefineries/cane/systems/__init__.py' 2025-06-05T05:40:47,314 adding 'biorefineries/cane/systems/bagasse.py' 2025-06-05T05:40:47,316 adding 'biorefineries/cane/systems/biodiesel.py' 2025-06-05T05:40:47,317 adding 'biorefineries/cane/systems/biodiesel_actag.py' 2025-06-05T05:40:47,319 adding 'biorefineries/cane/systems/cellulosic_biodiesel.py' 2025-06-05T05:40:47,320 adding 'biorefineries/cane/systems/cellulosic_biodiesel_actag.py' 2025-06-05T05:40:47,323 adding 'biorefineries/cane/systems/fermentation.py' 2025-06-05T05:40:47,325 adding 'biorefineries/cane/systems/juicing.py' 2025-06-05T05:40:47,326 adding 'biorefineries/cane/systems/lipid_extraction.py' 2025-06-05T05:40:47,328 adding 'biorefineries/cane/systems/lipidcane.py' 2025-06-05T05:40:47,329 adding 'biorefineries/cane/systems/pretreatment.py' 2025-06-05T05:40:47,330 adding 'biorefineries/cane/systems/sugar.py' 2025-06-05T05:40:47,332 adding 'biorefineries/cane/systems/oilcane/__init__.py' 2025-06-05T05:40:47,334 adding 'biorefineries/cane/systems/oilcane/biodiesel_ethanol.py' 2025-06-05T05:40:47,335 adding 'biorefineries/cane/systems/oilcane/cellulosic_biodiesel_ethanol.py' 2025-06-05T05:40:47,336 adding 'biorefineries/cane/systems/oilcane/cellulosic_crude_oil_ethanol.py' 2025-06-05T05:40:47,338 adding 'biorefineries/cane/systems/oilcane/crude_oil_ethanol.py' 2025-06-05T05:40:47,341 adding 'biorefineries/cane/systems/sugarcane/__init__.py' 2025-06-05T05:40:47,342 adding 'biorefineries/cane/systems/sugarcane/cellulosic_ethanol.py' 2025-06-05T05:40:47,344 adding 'biorefineries/cane/systems/sugarcane/ethanol.py' 2025-06-05T05:40:47,345 adding 'biorefineries/cane/systems/sugarcane/sugar_ethanol.py' 2025-06-05T05:40:47,347 adding 'biorefineries/cellulosic/__init__.py' 2025-06-05T05:40:47,349 adding 'biorefineries/cellulosic/biorefinery.py' 2025-06-05T05:40:47,350 adding 'biorefineries/cellulosic/chemicals.py' 2025-06-05T05:40:47,352 adding 'biorefineries/cellulosic/process_settings.py' 2025-06-05T05:40:47,353 adding 'biorefineries/cellulosic/streams.py' 2025-06-05T05:40:47,357 adding 'biorefineries/cellulosic/units.py' 2025-06-05T05:40:47,359 adding 'biorefineries/cellulosic/systems/__init__.py' 2025-06-05T05:40:47,360 adding 'biorefineries/cellulosic/systems/cellulosic_ethanol.py' 2025-06-05T05:40:47,362 adding 'biorefineries/cellulosic/systems/fermentation/__init__.py' 2025-06-05T05:40:47,364 adding 'biorefineries/cellulosic/systems/fermentation/cofermentation.py' 2025-06-05T05:40:47,366 adding 'biorefineries/cellulosic/systems/fermentation/general_interface.py' 2025-06-05T05:40:47,368 adding 'biorefineries/cellulosic/systems/fermentation/integrated_bioprocess.py' 2025-06-05T05:40:47,369 adding 'biorefineries/cellulosic/systems/fermentation/saccharification.py' 2025-06-05T05:40:47,371 adding 'biorefineries/cellulosic/systems/fermentation/simultaneous_saccharification_cofermentation.py' 2025-06-05T05:40:47,372 adding 'biorefineries/cellulosic/systems/pretreatment/__init__.py' 2025-06-05T05:40:47,374 adding 'biorefineries/cellulosic/systems/pretreatment/alkaline.py' 2025-06-05T05:40:47,375 adding 'biorefineries/cellulosic/systems/pretreatment/ammonia_fiber_expansion.py' 2025-06-05T05:40:47,377 adding 'biorefineries/cellulosic/systems/pretreatment/dilute_acid.py' 2025-06-05T05:40:47,378 adding 'biorefineries/cellulosic/systems/pretreatment/hot_water.py' 2025-06-05T05:40:47,380 adding 'biorefineries/corn/README.md' 2025-06-05T05:40:47,381 adding 'biorefineries/corn/__init__.py' 2025-06-05T05:40:47,382 adding 'biorefineries/corn/biorefinery.py' 2025-06-05T05:40:47,384 adding 'biorefineries/corn/chemicals.py' 2025-06-05T05:40:47,385 adding 'biorefineries/corn/process_settings.py' 2025-06-05T05:40:47,387 adding 'biorefineries/corn/systems.py' 2025-06-05T05:40:47,388 adding 'biorefineries/corn/tea.py' 2025-06-05T05:40:47,390 adding 'biorefineries/corn/units.py' 2025-06-05T05:40:47,392 adding 'biorefineries/corn/utils.py' 2025-06-05T05:40:47,394 adding 'biorefineries/cornstover/README.rst' 2025-06-05T05:40:47,395 adding 'biorefineries/cornstover/__init__.py' 2025-06-05T05:40:47,396 adding 'biorefineries/cornstover/_analysis.py' 2025-06-05T05:40:47,397 adding 'biorefineries/cornstover/_chemicals.py' 2025-06-05T05:40:47,399 adding 'biorefineries/cornstover/_legacy_code.py' 2025-06-05T05:40:47,400 adding 'biorefineries/cornstover/_plot_bars.py' 2025-06-05T05:40:47,402 adding 'biorefineries/cornstover/_plot_single_point.py' 2025-06-05T05:40:47,403 adding 'biorefineries/cornstover/_plot_spearman.py' 2025-06-05T05:40:47,406 adding 'biorefineries/cornstover/_plot_uncertainty.py' 2025-06-05T05:40:47,407 adding 'biorefineries/cornstover/_process_settings.py' 2025-06-05T05:40:47,408 adding 'biorefineries/cornstover/_sankey.py' 2025-06-05T05:40:47,410 adding 'biorefineries/cornstover/_switchgrass.py' 2025-06-05T05:40:47,411 adding 'biorefineries/cornstover/_tea.py' 2025-06-05T05:40:47,412 adding 'biorefineries/cornstover/model.py' 2025-06-05T05:40:47,413 adding 'biorefineries/cornstover/systems.py' 2025-06-05T05:40:47,414 adding 'biorefineries/cornstover/units.py' 2025-06-05T05:40:47,416 adding 'biorefineries/cornstover/webapp_model.py' 2025-06-05T05:40:47,418 adding 'biorefineries/ethanol/__init__.py' 2025-06-05T05:40:47,419 adding 'biorefineries/ethanol/streams.py' 2025-06-05T05:40:47,420 adding 'biorefineries/ethanol/systems.py' 2025-06-05T05:40:47,422 adding 'biorefineries/fattyalcohols/README.rst' 2025-06-05T05:40:47,423 adding 'biorefineries/fattyalcohols/__init__.py' 2025-06-05T05:40:47,424 adding 'biorefineries/fattyalcohols/_chemicals.py' 2025-06-05T05:40:47,426 adding 'biorefineries/fattyalcohols/_fattyalcohol_production.py' 2025-06-05T05:40:47,427 adding 'biorefineries/fattyalcohols/_process_specifications.py' 2025-06-05T05:40:47,429 adding 'biorefineries/fattyalcohols/_system.py' 2025-06-05T05:40:47,430 adding 'biorefineries/fattyalcohols/_tea.py' 2025-06-05T05:40:47,431 adding 'biorefineries/fattyalcohols/chemicals.yaml' 2025-06-05T05:40:47,432 adding 'biorefineries/fattyalcohols/streams.yaml' 2025-06-05T05:40:47,433 adding 'biorefineries/fattyalcohols/utils.py' 2025-06-05T05:40:47,435 adding 'biorefineries/fattyalcohols/units/__init__.py' 2025-06-05T05:40:47,437 adding 'biorefineries/fattyalcohols/units/fatty_alcohol_bioreactor.py' 2025-06-05T05:40:47,438 adding 'biorefineries/fattyalcohols/units/slle_centrifuge.py' 2025-06-05T05:40:47,440 adding 'biorefineries/gas_fermentation/README.md' 2025-06-05T05:40:47,441 adding 'biorefineries/gas_fermentation/__init__.py' 2025-06-05T05:40:47,444 adding 'biorefineries/gas_fermentation/biorefinery.py' 2025-06-05T05:40:47,445 adding 'biorefineries/gas_fermentation/chemicals.py' 2025-06-05T05:40:47,447 adding 'biorefineries/gas_fermentation/data.py' 2025-06-05T05:40:47,448 adding 'biorefineries/gas_fermentation/plots.py' 2025-06-05T05:40:47,450 adding 'biorefineries/gas_fermentation/process_settings.py' 2025-06-05T05:40:47,453 adding 'biorefineries/gas_fermentation/systems.py' 2025-06-05T05:40:47,455 adding 'biorefineries/gas_fermentation/tables.py' 2025-06-05T05:40:47,456 adding 'biorefineries/gas_fermentation/tests.py' 2025-06-05T05:40:47,461 adding 'biorefineries/gas_fermentation/uncertainty.py' 2025-06-05T05:40:47,463 adding 'biorefineries/gas_fermentation/units.py' 2025-06-05T05:40:47,471 adding 'biorefineries/gas_fermentation/images/AcEster_contours.svg' 2025-06-05T05:40:47,478 adding 'biorefineries/gas_fermentation/images/AcOH_contours.svg' 2025-06-05T05:40:47,546 adding 'biorefineries/gas_fermentation/images/AcOH_titer_AcEster_yield_contours.png' 2025-06-05T05:40:47,557 adding 'biorefineries/gas_fermentation/images/AcOH_titer_AcEster_yield_contours.svg' 2025-06-05T05:40:47,563 adding 'biorefineries/gas_fermentation/images/H2_contours.svg' 2025-06-05T05:40:47,607 adding 'biorefineries/gas_fermentation/images/MSP_CI_kde.png' 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'biorefineries/gas_fermentation/images/monte_carlo_across_bioreactor_yield.png' 2025-06-05T05:40:48,286 adding 'biorefineries/gas_fermentation/images/monte_carlo_across_bioreactor_yield.svg' 2025-06-05T05:40:48,314 adding 'biorefineries/gas_fermentation/images/montecarlo_absolute.png' 2025-06-05T05:40:48,332 adding 'biorefineries/gas_fermentation/images/montecarlo_absolute.svg' 2025-06-05T05:40:48,466 adding 'biorefineries/gas_fermentation/images/oleochemical_yield_contours.png' 2025-06-05T05:40:48,484 adding 'biorefineries/gas_fermentation/images/oleochemical_yield_contours.svg' 2025-06-05T05:40:48,490 adding 'biorefineries/gas_fermentation/images/preliminary_contour.png' 2025-06-05T05:40:48,493 adding 'biorefineries/gas_fermentation/images/preliminary_flowsheet.svg' 2025-06-05T05:40:48,496 adding 'biorefineries/gas_fermentation/images/preliminary_flowsheet_with_auxiliaries.svg' 2025-06-05T05:40:48,503 adding 'biorefineries/gas_fermentation/images/sensitivity.png' 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2025-06-05T05:40:48,691 adding 'biorefineries/gas_fermentation/notebooks/arpa_e_project.py' 2025-06-05T05:40:48,694 adding 'biorefineries/gas_fermentation/results/MSP_GWP_oleochemical_yield.npy' 2025-06-05T05:40:48,712 adding 'biorefineries/gas_fermentation/results/all fermentation-acetate growth_1000' 2025-06-05T05:40:48,751 adding 'biorefineries/gas_fermentation/results/all fermentation-acetate growth_monte_carlo.xlsx' 2025-06-05T05:40:48,755 adding 'biorefineries/gas_fermentation/results/all fermentation-acetate growth_spearman.xlsx' 2025-06-05T05:40:48,772 adding 'biorefineries/gas_fermentation/results/all fermentation-glucose growth_1000' 2025-06-05T05:40:48,811 adding 'biorefineries/gas_fermentation/results/all fermentation-glucose growth_monte_carlo.xlsx' 2025-06-05T05:40:48,828 adding 'biorefineries/gas_fermentation/results/all fermentation-glucose growth_monte_carlo_across_bioreactor_yield.xlsx' 2025-06-05T05:40:48,830 adding 'biorefineries/gas_fermentation/results/all fermentation-glucose growth_spearman.xlsx' 2025-06-05T05:40:48,833 adding 'biorefineries/lactic/README.rst' 2025-06-05T05:40:48,835 adding 'biorefineries/lactic/__init__.py' 2025-06-05T05:40:48,838 adding 'biorefineries/lactic/_chemicals.py' 2025-06-05T05:40:48,840 adding 'biorefineries/lactic/_process_settings.py' 2025-06-05T05:40:48,844 adding 'biorefineries/lactic/_processes.py' 2025-06-05T05:40:48,845 adding 'biorefineries/lactic/_profile.py' 2025-06-05T05:40:48,847 adding 'biorefineries/lactic/_tea.py' 2025-06-05T05:40:48,853 adding 'biorefineries/lactic/_units.py' 2025-06-05T05:40:48,856 adding 'biorefineries/lactic/models.py' 2025-06-05T05:40:48,858 adding 'biorefineries/lactic/systems.py' 2025-06-05T05:40:48,860 adding 'biorefineries/lactic/utils.py' 2025-06-05T05:40:48,862 adding 'biorefineries/lactic/analyses/1_uncertainties.py' 2025-06-05T05:40:48,863 adding 'biorefineries/lactic/analyses/2_fermentation_TRY.py' 2025-06-05T05:40:48,865 adding 'biorefineries/lactic/analyses/3_feedstock_carb-price.py' 2025-06-05T05:40:48,867 adding 'biorefineries/lipidcane/README.rst' 2025-06-05T05:40:48,869 adding 'biorefineries/lipidcane/__init__.py' 2025-06-05T05:40:48,870 adding 'biorefineries/lipidcane/_analysis.py' 2025-06-05T05:40:48,871 adding 'biorefineries/lipidcane/_chemicals.py' 2025-06-05T05:40:48,873 adding 'biorefineries/lipidcane/_feedstock_analysis.py' 2025-06-05T05:40:48,874 adding 'biorefineries/lipidcane/_plot_spearman.py' 2025-06-05T05:40:48,876 adding 'biorefineries/lipidcane/_plot_uncertainty.py' 2025-06-05T05:40:48,877 adding 'biorefineries/lipidcane/_process_settings.py' 2025-06-05T05:40:48,878 adding 'biorefineries/lipidcane/_system.py' 2025-06-05T05:40:48,880 adding 'biorefineries/lipidcane/_tea.py' 2025-06-05T05:40:48,881 adding 'biorefineries/lipidcane/_webapp_model.py' 2025-06-05T05:40:48,883 adding 'biorefineries/lipidcane/model.py' 2025-06-05T05:40:49,319 adding 'biorefineries/lipidcane/sankey_plot.ipynb' 2025-06-05T05:40:49,520 adding 'biorefineries/milk/GalactoOligoSaccharideProcess.xlsx' 2025-06-05T05:40:49,531 adding 'biorefineries/milk/README.md' 2025-06-05T05:40:49,533 adding 'biorefineries/milk/__init__.py' 2025-06-05T05:40:49,535 adding 'biorefineries/milk/biorefinery.py' 2025-06-05T05:40:49,537 adding 'biorefineries/milk/chemicals.py' 2025-06-05T05:40:49,538 adding 'biorefineries/milk/data.py' 2025-06-05T05:40:49,539 adding 'biorefineries/milk/plots.py' 2025-06-05T05:40:49,540 adding 'biorefineries/milk/process_settings.py' 2025-06-05T05:40:49,542 adding 'biorefineries/milk/systems.py' 2025-06-05T05:40:49,543 adding 'biorefineries/milk/tests.py' 2025-06-05T05:40:49,547 adding 'biorefineries/milk/uncertainty.py' 2025-06-05T05:40:49,548 adding 'biorefineries/milk/units.py' 2025-06-05T05:40:49,593 adding 'biorefineries/milk/images/MSP_across_yield_productivity_GlucoseMedia.png' 2025-06-05T05:40:49,602 adding 'biorefineries/milk/images/MSP_across_yield_productivity_GlucoseMedia.svg' 2025-06-05T05:40:49,647 adding 'biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate.png' 2025-06-05T05:40:49,656 adding 'biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate.svg' 2025-06-05T05:40:49,720 adding 'biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate_GlucoseMedia.png' 2025-06-05T05:40:49,731 adding 'biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate_GlucoseMedia.svg' 2025-06-05T05:40:49,733 adding 'biorefineries/milk/results/MSP_GWP_titer_productivity_AcEster_GlucoseMedia.npy' 2025-06-05T05:40:49,735 adding 'biorefineries/milk/results/MSP_GWP_titer_productivity_AcEster_UFPermeate.npy' 2025-06-05T05:40:49,737 adding 'biorefineries/milk/results/MSP_GWP_titer_productivity_AcEster_UFPermeate_GlucoseMedia.npy' 2025-06-05T05:40:49,739 adding 'biorefineries/oilcane/README.md' 2025-06-05T05:40:49,741 adding 'biorefineries/oilcane/__init__.py' 2025-06-05T05:40:49,742 adding 'biorefineries/oilcane/_chemicals.py' 2025-06-05T05:40:49,744 adding 'biorefineries/oilcane/_contour_plots.py' 2025-06-05T05:40:49,746 adding 'biorefineries/oilcane/_evaluation.py' 2025-06-05T05:40:49,747 adding 'biorefineries/oilcane/_feature_mockups.py' 2025-06-05T05:40:49,748 adding 'biorefineries/oilcane/_line_plots.py' 2025-06-05T05:40:49,750 adding 'biorefineries/oilcane/_load_data.py' 2025-06-05T05:40:49,752 adding 'biorefineries/oilcane/_parse_configuration.py' 2025-06-05T05:40:49,753 adding 'biorefineries/oilcane/_tables.py' 2025-06-05T05:40:49,754 adding 'biorefineries/oilcane/_tea.py' 2025-06-05T05:40:49,760 adding 'biorefineries/oilcane/_uncertainty_plots.py' 2025-06-05T05:40:49,762 adding 'biorefineries/oilcane/lca_benchmarks.py' 2025-06-05T05:40:50,226 adding 'biorefineries/oilcane/sankey_energy.ipynb' 2025-06-05T05:40:50,254 adding 'biorefineries/oilcane/sankey_plot.ipynb' 2025-06-05T05:40:50,256 adding 'biorefineries/oilcane/systems.py' 2025-06-05T05:40:50,257 adding 'biorefineries/oilcane/units.py' 2025-06-05T05:40:50,259 adding 'biorefineries/oilcane/utils.py' 2025-06-05T05:40:50,260 adding 'biorefineries/oilcane/webapp_model.py' 2025-06-05T05:40:50,263 adding 'biorefineries/sugarcane/README.rst' 2025-06-05T05:40:50,264 adding 'biorefineries/sugarcane/__init__.py' 2025-06-05T05:40:50,265 adding 'biorefineries/sugarcane/_chemicals.py' 2025-06-05T05:40:50,266 adding 'biorefineries/sugarcane/_process_settings.py' 2025-06-05T05:40:50,267 adding 'biorefineries/sugarcane/_tea.py' 2025-06-05T05:40:50,269 adding 'biorefineries/sugarcane/model.py' 2025-06-05T05:40:50,270 adding 'biorefineries/sugarcane/systems.py' 2025-06-05T05:40:50,272 adding 'biorefineries/tea/__init__.py' 2025-06-05T05:40:50,273 adding 'biorefineries/tea/cellulosic_ethanol_tea.py' 2025-06-05T05:40:50,275 adding 'biorefineries/tea/conventional_ethanol_tea.py' 2025-06-05T05:40:50,277 adding 'biorefineries/tests/__init__.py' 2025-06-05T05:40:50,278 adding 'biorefineries/tests/run_readmes.py' 2025-06-05T05:40:50,281 adding 'biorefineries/tests/test_biorefineries.py' 2025-06-05T05:40:50,284 adding 'biorefineries-2.34.5.dist-info/licenses/LICENSE.txt' 2025-06-05T05:40:50,285 adding 'biorefineries-2.34.5.dist-info/METADATA' 2025-06-05T05:40:50,286 adding 'biorefineries-2.34.5.dist-info/WHEEL' 2025-06-05T05:40:50,287 adding 'biorefineries-2.34.5.dist-info/top_level.txt' 2025-06-05T05:40:50,291 adding 'biorefineries-2.34.5.dist-info/RECORD' 2025-06-05T05:40:50,473 removing build/bdist.linux-armv7l/wheel 2025-06-05T05:40:50,665 Building wheel for biorefineries (setup.py): finished with status 'done' 2025-06-05T05:40:50,803 Created wheel for biorefineries: filename=biorefineries-2.34.5-py3-none-any.whl size=13660579 sha256=eaae67b3d0d7f8539359463d4ac65f66c3c70226926963e19c763fbc07d8f9db 2025-06-05T05:40:50,804 Stored in directory: /tmp/pip-ephem-wheel-cache-ka1_9kod/wheels/ec/e0/6f/3e3bd8372d9b9c94fac1d831cf23bb5c8c61e6c7f038ce79e9 2025-06-05T05:40:50,828 Successfully built biorefineries 2025-06-05T05:40:51,136 Removed build tracker: '/tmp/pip-build-tracker-l9yu112n'