2025-06-05T20:18:08,730 Created temporary directory: /tmp/pip-build-tracker-tm2p4api 2025-06-05T20:18:08,732 Initialized build tracking at /tmp/pip-build-tracker-tm2p4api 2025-06-05T20:18:08,732 Created build tracker: /tmp/pip-build-tracker-tm2p4api 2025-06-05T20:18:08,733 Entered build tracker: /tmp/pip-build-tracker-tm2p4api 2025-06-05T20:18:08,734 Created temporary directory: /tmp/pip-wheel-02ord8s5 2025-06-05T20:18:08,739 Created temporary directory: /tmp/pip-ephem-wheel-cache-8ti0ghsl 2025-06-05T20:18:08,798 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-06-05T20:18:08,800 2 location(s) to search for versions of dxpy: 2025-06-05T20:18:08,800 * https://pypi.org/simple/dxpy/ 2025-06-05T20:18:08,800 * https://www.piwheels.org/simple/dxpy/ 2025-06-05T20:18:08,801 Fetching project page and analyzing links: https://pypi.org/simple/dxpy/ 2025-06-05T20:18:08,802 Getting page https://pypi.org/simple/dxpy/ 2025-06-05T20:18:08,803 Found index url 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https://files.pythonhosted.org/packages/02/35/cd50421a8cb3b207650a77ca711cd411b45f48b6f619332e6ec0fd0f4d4e/dxpy-0.378.0.tar.gz (from https://pypi.org/simple/dxpy/) (requires-python:>=3.8), version: 0.378.0 2025-06-05T20:18:09,292 Found link https://files.pythonhosted.org/packages/31/1e/1829a6f87458a719d471c1bf49d73c024240da81b4993a153008a2d43768/dxpy-0.379.0.tar.gz (from https://pypi.org/simple/dxpy/) (requires-python:>=3.8), version: 0.379.0 2025-06-05T20:18:09,293 Found link https://files.pythonhosted.org/packages/07/44/dfea2b1b83c418a2c6291bc4d490044d5a74316fb2201bd38fd8809dec3a/dxpy-0.380.0.tar.gz (from https://pypi.org/simple/dxpy/) (requires-python:>=3.8), version: 0.380.0 2025-06-05T20:18:09,294 Found link https://files.pythonhosted.org/packages/10/14/eaaa19a8970127db18dfd3c091cd995a5e2adeac2dadcc5d343dceba6867/dxpy-0.381.0.tar.gz (from https://pypi.org/simple/dxpy/) (requires-python:>=3.8), version: 0.381.0 2025-06-05T20:18:09,295 Found link https://files.pythonhosted.org/packages/d3/78/beb59a5be6be5014d53eb794aa0e73c60e857ab501c4186174853823670c/dxpy-0.382.0.tar.gz (from https://pypi.org/simple/dxpy/) (requires-python:>=3.8), version: 0.382.0 2025-06-05T20:18:09,295 Found link https://files.pythonhosted.org/packages/fc/22/74984b062b32a812e86db7c9c6ae1057452557b1a5964ef8f3cc4cb80beb/dxpy-0.383.1.tar.gz (from https://pypi.org/simple/dxpy/) (requires-python:>=3.8), version: 0.383.1 2025-06-05T20:18:09,296 Found link https://files.pythonhosted.org/packages/c9/b8/4b61ec5171f3a0cd807d01457bfc9dcc234e1cfb5a7db2de1267a84c7a19/dxpy-0.384.0.tar.gz (from https://pypi.org/simple/dxpy/) (requires-python:>=3.8), version: 0.384.0 2025-06-05T20:18:09,297 Found link https://files.pythonhosted.org/packages/18/8a/6266c7959fad535dc6168b59a62a4b7a6d0b2a217707ada2c2c4fb7d5e44/dxpy-0.385.0.tar.gz (from https://pypi.org/simple/dxpy/) (requires-python:>=3.8), version: 0.385.0 2025-06-05T20:18:09,298 Found link https://files.pythonhosted.org/packages/90/34/f6361dc1c72a5a6ba83f3c65ddceed00a986bd92bf7add1603c3d76de3b9/dxpy-0.386.0.tar.gz (from https://pypi.org/simple/dxpy/) (requires-python:>=3.8), version: 0.386.0 2025-06-05T20:18:09,298 Found link https://files.pythonhosted.org/packages/7b/62/689f254efb4b4419b1121611c1b32d7bbe000ad950f8eee685e9f996b81a/dxpy-0.387.0.tar.gz (from https://pypi.org/simple/dxpy/) (requires-python:>=3.8), version: 0.387.0 2025-06-05T20:18:09,299 Found link https://files.pythonhosted.org/packages/ec/84/aee7bf4106e7641d70689fdc1c7cf941e426a363c853b1262e98ee90075f/dxpy-0.388.0.tar.gz (from https://pypi.org/simple/dxpy/) (requires-python:>=3.8), version: 0.388.0 2025-06-05T20:18:09,300 Found link https://files.pythonhosted.org/packages/39/17/e55b1ee5fc501969d027159eddad0f0ac7d01ad6a9ef57f7975fa4465ff2/dxpy-0.389.0.tar.gz (from https://pypi.org/simple/dxpy/) (requires-python:>=3.8), version: 0.389.0 2025-06-05T20:18:09,300 Found link https://files.pythonhosted.org/packages/58/76/aee8362d203193e8280b7cdecc075d175ea6fefad83d771b2f8f7eb0ef8c/dxpy-0.390.0.tar.gz (from https://pypi.org/simple/dxpy/) (requires-python:>=3.8), version: 0.390.0 2025-06-05T20:18:09,301 Found link https://files.pythonhosted.org/packages/5a/4b/84f73f96807c37b6a1f182c43c1f92e5c6c2a0a4213e9e77b4fd8e6e1a95/dxpy-0.391.0.tar.gz (from https://pypi.org/simple/dxpy/) (requires-python:>=3.8), version: 0.391.0 2025-06-05T20:18:09,302 Found link https://files.pythonhosted.org/packages/b7/69/fff81f942f2d8344c6a8a46488508dccb918680fe91c0606b09e3688b0c5/dxpy-0.392.0.tar.gz (from https://pypi.org/simple/dxpy/) (requires-python:>=3.8), version: 0.392.0 2025-06-05T20:18:09,302 Found link https://files.pythonhosted.org/packages/bb/7a/b076c1fff212bc51fab34e4d25e1e6f3dfc7412a6dd8067163f6c3750b1d/dxpy-0.393.0.tar.gz (from https://pypi.org/simple/dxpy/) (requires-python:>=3.8), version: 0.393.0 2025-06-05T20:18:09,303 Found link https://files.pythonhosted.org/packages/a3/01/2a986db11c0668393c19cbbbef70ed54b8f6172bc825b9228adfd38417cf/dxpy-0.394.0.tar.gz (from https://pypi.org/simple/dxpy/) (requires-python:>=3.8), version: 0.394.0 2025-06-05T20:18:09,304 Found link https://files.pythonhosted.org/packages/67/28/232465b4bb241c5cd9fb20f8dc66cf469a9bc3757430e58e62897c0ee016/dxpy-0.395.0.tar.gz (from https://pypi.org/simple/dxpy/) (requires-python:>=3.8), version: 0.395.0 2025-06-05T20:18:09,304 Found link https://files.pythonhosted.org/packages/47/32/d7f0c7b81b65024f44d2d595336122bf4a0ae8420d74f5b3a005931a6640/dxpy-0.396.0.tar.gz (from https://pypi.org/simple/dxpy/) (requires-python:>=3.8), version: 0.396.0 2025-06-05T20:18:09,305 Found link https://files.pythonhosted.org/packages/7e/92/8f47cadffcb8de2af7f8062b95adcdda96b1f84aa6feadc32dc112228cc6/dxpy-0.397.0.tar.gz (from https://pypi.org/simple/dxpy/) (requires-python:>=3.8), version: 0.397.0 2025-06-05T20:18:09,306 Fetching project page and analyzing links: https://www.piwheels.org/simple/dxpy/ 2025-06-05T20:18:09,307 Getting page https://www.piwheels.org/simple/dxpy/ 2025-06-05T20:18:09,308 Found index url https://www.piwheels.org/simple/ 2025-06-05T20:18:09,466 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/dxpy/ 2025-06-05T20:18:10,124 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/dxpy/ 2025-06-05T20:18:11,295 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/dxpy/ 2025-06-05T20:18:13,463 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/dxpy/ 2025-06-05T20:18:17,638 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/dxpy/ 2025-06-05T20:18:17,810 Could not fetch URL https://www.piwheels.org/simple/dxpy/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/dxpy/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping 2025-06-05T20:18:17,812 Skipping link: not a file: https://www.piwheels.org/simple/dxpy/ 2025-06-05T20:18:17,812 Skipping link: not a file: https://pypi.org/simple/dxpy/ 2025-06-05T20:18:17,875 Given no hashes to check 1 links for project 'dxpy': discarding no candidates 2025-06-05T20:18:17,878 Collecting dxpy==0.395.0 2025-06-05T20:18:17,880 Created temporary directory: /tmp/pip-unpack-skibg2xn 2025-06-05T20:18:18,124 Downloading dxpy-0.395.0.tar.gz (614 kB) 2025-06-05T20:18:18,786 Added dxpy==0.395.0 from https://files.pythonhosted.org/packages/67/28/232465b4bb241c5cd9fb20f8dc66cf469a9bc3757430e58e62897c0ee016/dxpy-0.395.0.tar.gz to build tracker '/tmp/pip-build-tracker-tm2p4api' 2025-06-05T20:18:18,789 Running setup.py (path:/tmp/pip-wheel-02ord8s5/dxpy_dd2d180e21a64928b421abf387e98748/setup.py) egg_info for package dxpy 2025-06-05T20:18:18,790 Created temporary directory: /tmp/pip-pip-egg-info-2klxjt46 2025-06-05T20:18:18,791 Preparing metadata (setup.py): started 2025-06-05T20:18:18,792 Running command python setup.py egg_info 2025-06-05T20:18:19,411 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-06-05T20:18:19,412 warnings.warn(msg) 2025-06-05T20:18:19,412 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-06-05T20:18:19,413 warnings.warn(msg) 2025-06-05T20:18:19,733 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-06-05T20:18:19,734 !! 2025-06-05T20:18:19,735 ******************************************************************************** 2025-06-05T20:18:19,735 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-06-05T20:18:19,737 License :: OSI Approved :: Apache Software License 2025-06-05T20:18:19,738 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-05T20:18:19,738 ******************************************************************************** 2025-06-05T20:18:19,739 !! 2025-06-05T20:18:19,740 self._finalize_license_expression() 2025-06-05T20:18:19,765 running egg_info 2025-06-05T20:18:19,793 creating /tmp/pip-pip-egg-info-2klxjt46/dxpy.egg-info 2025-06-05T20:18:19,794 writing /tmp/pip-pip-egg-info-2klxjt46/dxpy.egg-info/PKG-INFO 2025-06-05T20:18:19,800 writing dependency_links to /tmp/pip-pip-egg-info-2klxjt46/dxpy.egg-info/dependency_links.txt 2025-06-05T20:18:19,801 writing entry points to /tmp/pip-pip-egg-info-2klxjt46/dxpy.egg-info/entry_points.txt 2025-06-05T20:18:19,806 writing requirements to /tmp/pip-pip-egg-info-2klxjt46/dxpy.egg-info/requires.txt 2025-06-05T20:18:19,807 writing top-level names to /tmp/pip-pip-egg-info-2klxjt46/dxpy.egg-info/top_level.txt 2025-06-05T20:18:19,809 writing manifest file '/tmp/pip-pip-egg-info-2klxjt46/dxpy.egg-info/SOURCES.txt' 2025-06-05T20:18:19,951 reading manifest file '/tmp/pip-pip-egg-info-2klxjt46/dxpy.egg-info/SOURCES.txt' 2025-06-05T20:18:19,953 reading manifest template 'MANIFEST.in' 2025-06-05T20:18:19,977 writing manifest file '/tmp/pip-pip-egg-info-2klxjt46/dxpy.egg-info/SOURCES.txt' 2025-06-05T20:18:20,085 Preparing metadata (setup.py): finished with status 'done' 2025-06-05T20:18:20,089 Source in /tmp/pip-wheel-02ord8s5/dxpy_dd2d180e21a64928b421abf387e98748 has version 0.395.0, which satisfies requirement dxpy==0.395.0 from https://files.pythonhosted.org/packages/67/28/232465b4bb241c5cd9fb20f8dc66cf469a9bc3757430e58e62897c0ee016/dxpy-0.395.0.tar.gz 2025-06-05T20:18:20,090 Removed dxpy==0.395.0 from https://files.pythonhosted.org/packages/67/28/232465b4bb241c5cd9fb20f8dc66cf469a9bc3757430e58e62897c0ee016/dxpy-0.395.0.tar.gz from build tracker '/tmp/pip-build-tracker-tm2p4api' 2025-06-05T20:18:20,101 Created temporary directory: /tmp/pip-unpack-yq2dhifq 2025-06-05T20:18:20,103 Created temporary directory: /tmp/pip-unpack-0v_moh8s 2025-06-05T20:18:20,103 Building wheels for collected packages: dxpy 2025-06-05T20:18:20,107 Created temporary directory: /tmp/pip-wheel-8t7ze42c 2025-06-05T20:18:20,108 DEPRECATION: Building 'dxpy' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'dxpy'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-06-05T20:18:20,110 Building wheel for dxpy (setup.py): started 2025-06-05T20:18:20,111 Destination directory: /tmp/pip-wheel-8t7ze42c 2025-06-05T20:18:20,111 Running command python setup.py bdist_wheel 2025-06-05T20:18:20,666 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-06-05T20:18:20,667 warnings.warn(msg) 2025-06-05T20:18:20,667 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-06-05T20:18:20,668 warnings.warn(msg) 2025-06-05T20:18:20,975 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-06-05T20:18:20,975 !! 2025-06-05T20:18:20,977 ******************************************************************************** 2025-06-05T20:18:20,977 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-06-05T20:18:20,979 License :: OSI Approved :: Apache Software License 2025-06-05T20:18:20,980 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-05T20:18:20,981 ******************************************************************************** 2025-06-05T20:18:20,982 !! 2025-06-05T20:18:20,982 self._finalize_license_expression() 2025-06-05T20:18:20,983 running bdist_wheel 2025-06-05T20:18:21,063 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:135: SetuptoolsDeprecationWarning: bdist_wheel.universal is deprecated 2025-06-05T20:18:21,064 !! 2025-06-05T20:18:21,065 ******************************************************************************** 2025-06-05T20:18:21,066 With Python 2.7 end-of-life, support for building universal wheels 2025-06-05T20:18:21,066 (i.e., wheels that support both Python 2 and Python 3) 2025-06-05T20:18:21,067 is being obviated. 2025-06-05T20:18:21,068 Please discontinue using this option, or if you still need it, 2025-06-05T20:18:21,068 file an issue with pypa/setuptools describing your use case. 2025-06-05T20:18:21,070 By 2025-Aug-30, you need to update your project and remove deprecated calls 2025-06-05T20:18:21,071 or your builds will no longer be supported. 2025-06-05T20:18:21,071 ******************************************************************************** 2025-06-05T20:18:21,072 !! 2025-06-05T20:18:21,073 self.finalize_options() 2025-06-05T20:18:21,124 running build 2025-06-05T20:18:21,125 running build_py 2025-06-05T20:18:21,157 creating build/lib/dxpy 2025-06-05T20:18:21,160 copying dxpy/api.py -> build/lib/dxpy 2025-06-05T20:18:21,164 copying dxpy/exceptions.py -> build/lib/dxpy 2025-06-05T20:18:21,166 copying dxpy/app_categories.py -> build/lib/dxpy 2025-06-05T20:18:21,168 copying dxpy/dxlog.py -> build/lib/dxpy 2025-06-05T20:18:21,170 copying dxpy/toolkit_version.py -> build/lib/dxpy 2025-06-05T20:18:21,172 copying dxpy/__init__.py -> build/lib/dxpy 2025-06-05T20:18:21,176 copying dxpy/ssh_tunnel_app_support.py -> build/lib/dxpy 2025-06-05T20:18:21,178 copying dxpy/compat.py -> build/lib/dxpy 2025-06-05T20:18:21,180 copying dxpy/app_builder.py -> build/lib/dxpy 2025-06-05T20:18:21,183 copying dxpy/system_requirements.py -> build/lib/dxpy 2025-06-05T20:18:21,185 copying dxpy/workflow_builder.py -> build/lib/dxpy 2025-06-05T20:18:21,188 copying dxpy/asset_builder.py -> build/lib/dxpy 2025-06-05T20:18:21,191 copying dxpy/executable_builder.py -> build/lib/dxpy 2025-06-05T20:18:21,194 creating build/lib/dxpy/scripts 2025-06-05T20:18:21,196 copying dxpy/scripts/__init__.py -> build/lib/dxpy/scripts 2025-06-05T20:18:21,198 copying dxpy/scripts/dx_build_app.py -> build/lib/dxpy/scripts 2025-06-05T20:18:21,202 copying dxpy/scripts/dx.py -> build/lib/dxpy/scripts 2025-06-05T20:18:21,211 copying dxpy/scripts/dx_build_applet.py -> build/lib/dxpy/scripts 2025-06-05T20:18:21,213 copying dxpy/scripts/dx_app_wizard.py -> build/lib/dxpy/scripts 2025-06-05T20:18:21,217 creating build/lib/dxpy/templating 2025-06-05T20:18:21,218 copying dxpy/templating/bash.py -> build/lib/dxpy/templating 2025-06-05T20:18:21,220 copying dxpy/templating/__init__.py -> build/lib/dxpy/templating 2025-06-05T20:18:21,222 copying dxpy/templating/python.py -> build/lib/dxpy/templating 2025-06-05T20:18:21,224 copying dxpy/templating/utils.py -> build/lib/dxpy/templating 2025-06-05T20:18:21,228 creating build/lib/dxpy/dx_extract_utils 2025-06-05T20:18:21,229 copying dxpy/dx_extract_utils/__init__.py -> build/lib/dxpy/dx_extract_utils 2025-06-05T20:18:21,231 copying dxpy/dx_extract_utils/input_validation_somatic.py -> build/lib/dxpy/dx_extract_utils 2025-06-05T20:18:21,234 copying dxpy/dx_extract_utils/input_validation.py -> build/lib/dxpy/dx_extract_utils 2025-06-05T20:18:21,237 copying dxpy/dx_extract_utils/filter_to_payload.py -> build/lib/dxpy/dx_extract_utils 2025-06-05T20:18:21,240 copying dxpy/dx_extract_utils/germline_utils.py -> build/lib/dxpy/dx_extract_utils 2025-06-05T20:18:21,243 copying dxpy/dx_extract_utils/cohort_filter_payload.py -> build/lib/dxpy/dx_extract_utils 2025-06-05T20:18:21,245 copying dxpy/dx_extract_utils/retrieve_bins.py -> build/lib/dxpy/dx_extract_utils 2025-06-05T20:18:21,247 copying dxpy/dx_extract_utils/somatic_filter_payload.py -> build/lib/dxpy/dx_extract_utils 2025-06-05T20:18:21,250 creating build/lib/dxpy/nextflow 2025-06-05T20:18:21,252 copying dxpy/nextflow/nextflow_builder.py -> build/lib/dxpy/nextflow 2025-06-05T20:18:21,254 copying dxpy/nextflow/ImageRef.py -> build/lib/dxpy/nextflow 2025-06-05T20:18:21,257 copying dxpy/nextflow/collect_images.py -> build/lib/dxpy/nextflow 2025-06-05T20:18:21,259 copying dxpy/nextflow/ImageRefFactory.py -> build/lib/dxpy/nextflow 2025-06-05T20:18:21,261 copying dxpy/nextflow/__init__.py -> build/lib/dxpy/nextflow 2025-06-05T20:18:21,262 copying dxpy/nextflow/nextflow_templates.py -> build/lib/dxpy/nextflow 2025-06-05T20:18:21,265 copying dxpy/nextflow/nextflow_utils.py -> build/lib/dxpy/nextflow 2025-06-05T20:18:21,268 creating build/lib/dxpy/packages 2025-06-05T20:18:21,269 copying dxpy/packages/__init__.py -> build/lib/dxpy/packages 2025-06-05T20:18:21,272 creating build/lib/dxpy/bindings 2025-06-05T20:18:21,273 copying dxpy/bindings/dxapp.py -> build/lib/dxpy/bindings 2025-06-05T20:18:21,276 copying dxpy/bindings/dxdataobject_functions.py -> build/lib/dxpy/bindings 2025-06-05T20:18:21,279 copying dxpy/bindings/dxrecord.py -> build/lib/dxpy/bindings 2025-06-05T20:18:21,281 copying dxpy/bindings/mount_all_inputs.py -> build/lib/dxpy/bindings 2025-06-05T20:18:21,283 copying dxpy/bindings/dxfile_functions.py -> build/lib/dxpy/bindings 2025-06-05T20:18:21,287 copying dxpy/bindings/__init__.py -> build/lib/dxpy/bindings 2025-06-05T20:18:21,290 copying dxpy/bindings/dxapp_container_functions.py -> build/lib/dxpy/bindings 2025-06-05T20:18:21,292 copying dxpy/bindings/dxdatabase.py -> build/lib/dxpy/bindings 2025-06-05T20:18:21,295 copying dxpy/bindings/dxjob.py -> build/lib/dxpy/bindings 2025-06-05T20:18:21,298 copying dxpy/bindings/dxdatabase_functions.py -> build/lib/dxpy/bindings 2025-06-05T20:18:21,301 copying dxpy/bindings/download_all_inputs.py -> build/lib/dxpy/bindings 2025-06-05T20:18:21,303 copying dxpy/bindings/dxworkflow.py -> build/lib/dxpy/bindings 2025-06-05T20:18:21,306 copying dxpy/bindings/dxfile.py -> build/lib/dxpy/bindings 2025-06-05T20:18:21,310 copying dxpy/bindings/dxproject.py -> build/lib/dxpy/bindings 2025-06-05T20:18:21,313 copying dxpy/bindings/dxanalysis.py -> build/lib/dxpy/bindings 2025-06-05T20:18:21,316 copying dxpy/bindings/auth.py -> build/lib/dxpy/bindings 2025-06-05T20:18:21,318 copying dxpy/bindings/dxapplet.py -> build/lib/dxpy/bindings 2025-06-05T20:18:21,322 copying dxpy/bindings/search.py -> build/lib/dxpy/bindings 2025-06-05T20:18:21,326 copying dxpy/bindings/dxglobalworkflow.py -> build/lib/dxpy/bindings 2025-06-05T20:18:21,330 creating build/lib/dxpy/utils 2025-06-05T20:18:21,332 copying dxpy/utils/executable_unbuilder.py -> build/lib/dxpy/utils 2025-06-05T20:18:21,335 copying dxpy/utils/genomic_utils.py -> build/lib/dxpy/utils 2025-06-05T20:18:21,337 copying dxpy/utils/__init__.py -> build/lib/dxpy/utils 2025-06-05T20:18:21,340 copying dxpy/utils/config.py -> build/lib/dxpy/utils 2025-06-05T20:18:21,343 copying dxpy/utils/batch_utils.py -> build/lib/dxpy/utils 2025-06-05T20:18:21,346 copying dxpy/utils/pretty_print.py -> build/lib/dxpy/utils 2025-06-05T20:18:21,349 copying dxpy/utils/printing.py -> build/lib/dxpy/utils 2025-06-05T20:18:21,352 copying dxpy/utils/completer.py -> build/lib/dxpy/utils 2025-06-05T20:18:21,355 copying dxpy/utils/file_load_utils.py -> build/lib/dxpy/utils 2025-06-05T20:18:21,358 copying dxpy/utils/version.py -> build/lib/dxpy/utils 2025-06-05T20:18:21,360 copying dxpy/utils/job_log_client.py -> build/lib/dxpy/utils 2025-06-05T20:18:21,363 copying dxpy/utils/file_handle.py -> build/lib/dxpy/utils 2025-06-05T20:18:21,366 copying dxpy/utils/pathmatch.py -> build/lib/dxpy/utils 2025-06-05T20:18:21,368 copying dxpy/utils/exec_utils.py -> build/lib/dxpy/utils 2025-06-05T20:18:21,372 copying dxpy/utils/resolver.py -> build/lib/dxpy/utils 2025-06-05T20:18:21,376 copying dxpy/utils/spelling_corrector.py -> build/lib/dxpy/utils 2025-06-05T20:18:21,378 copying dxpy/utils/local_exec_utils.py -> build/lib/dxpy/utils 2025-06-05T20:18:21,381 copying dxpy/utils/describe.py -> build/lib/dxpy/utils 2025-06-05T20:18:21,386 creating build/lib/dxpy/cli 2025-06-05T20:18:21,388 copying dxpy/cli/__init__.py -> build/lib/dxpy/cli 2025-06-05T20:18:21,390 copying dxpy/cli/help_messages.py -> build/lib/dxpy/cli 2025-06-05T20:18:21,392 copying dxpy/cli/org.py -> build/lib/dxpy/cli 2025-06-05T20:18:21,395 copying dxpy/cli/output_handling.py -> build/lib/dxpy/cli 2025-06-05T20:18:21,398 copying dxpy/cli/workflow.py -> build/lib/dxpy/cli 2025-06-05T20:18:21,401 copying dxpy/cli/cp.py -> build/lib/dxpy/cli 2025-06-05T20:18:21,404 copying dxpy/cli/download.py -> build/lib/dxpy/cli 2025-06-05T20:18:21,408 copying dxpy/cli/parsers.py -> build/lib/dxpy/cli 2025-06-05T20:18:21,412 copying dxpy/cli/dataset_utilities.py -> build/lib/dxpy/cli 2025-06-05T20:18:21,419 copying dxpy/cli/exec_io.py -> build/lib/dxpy/cli 2025-06-05T20:18:21,424 creating build/lib/dxpy/bindings/apollo 2025-06-05T20:18:21,425 copying dxpy/bindings/apollo/__init__.py -> build/lib/dxpy/bindings/apollo 2025-06-05T20:18:21,427 copying dxpy/bindings/apollo/dataset.py -> build/lib/dxpy/bindings/apollo 2025-06-05T20:18:21,429 copying dxpy/bindings/apollo/vizclient.py -> build/lib/dxpy/bindings/apollo 2025-06-05T20:18:21,432 copying dxpy/bindings/apollo/cmd_line_options_validator.py -> build/lib/dxpy/bindings/apollo 2025-06-05T20:18:21,434 copying dxpy/bindings/apollo/vizserver_filters_from_json_parser.py -> build/lib/dxpy/bindings/apollo 2025-06-05T20:18:21,437 copying dxpy/bindings/apollo/json_validation_by_schema.py -> build/lib/dxpy/bindings/apollo 2025-06-05T20:18:21,439 copying dxpy/bindings/apollo/vizserver_payload_builder.py -> build/lib/dxpy/bindings/apollo 2025-06-05T20:18:21,441 copying dxpy/bindings/apollo/data_transformations.py -> build/lib/dxpy/bindings/apollo 2025-06-05T20:18:21,443 creating build/lib/dxpy/bindings/apollo/schemas 2025-06-05T20:18:21,445 copying dxpy/bindings/apollo/schemas/__init__.py -> build/lib/dxpy/bindings/apollo/schemas 2025-06-05T20:18:21,446 copying dxpy/bindings/apollo/schemas/input_arguments_validation_schemas.py -> build/lib/dxpy/bindings/apollo/schemas 2025-06-05T20:18:21,449 copying dxpy/bindings/apollo/schemas/assay_filtering_conditions.py -> build/lib/dxpy/bindings/apollo/schemas 2025-06-05T20:18:21,451 copying dxpy/bindings/apollo/schemas/assay_filtering_json_schemas.py -> build/lib/dxpy/bindings/apollo/schemas 2025-06-05T20:18:21,466 creating build/lib/dxpy/templating/templates 2025-06-05T20:18:21,467 copying dxpy/templating/templates/Readme.md -> build/lib/dxpy/templating/templates 2025-06-05T20:18:21,469 creating build/lib/dxpy/templating/templates/python/parallelized 2025-06-05T20:18:21,471 copying dxpy/templating/templates/python/parallelized/dxapp.json -> build/lib/dxpy/templating/templates/python/parallelized 2025-06-05T20:18:21,473 creating build/lib/dxpy/templating/templates/python/parallelized/src 2025-06-05T20:18:21,474 copying dxpy/templating/templates/python/parallelized/src/code.py -> build/lib/dxpy/templating/templates/python/parallelized/src 2025-06-05T20:18:21,476 creating build/lib/dxpy/templating/templates/python/parallelized/test 2025-06-05T20:18:21,477 copying dxpy/templating/templates/python/parallelized/test/test.py -> build/lib/dxpy/templating/templates/python/parallelized/test 2025-06-05T20:18:21,480 creating build/lib/dxpy/templating/templates/python/scatter-process-gather 2025-06-05T20:18:21,481 copying dxpy/templating/templates/python/scatter-process-gather/dxapp.json -> build/lib/dxpy/templating/templates/python/scatter-process-gather 2025-06-05T20:18:21,483 creating build/lib/dxpy/templating/templates/python/scatter-process-gather/src 2025-06-05T20:18:21,484 copying dxpy/templating/templates/python/scatter-process-gather/src/code.py -> build/lib/dxpy/templating/templates/python/scatter-process-gather/src 2025-06-05T20:18:21,487 creating build/lib/dxpy/templating/templates/python/scatter-process-gather/test 2025-06-05T20:18:21,488 copying dxpy/templating/templates/python/scatter-process-gather/test/test.py -> build/lib/dxpy/templating/templates/python/scatter-process-gather/test 2025-06-05T20:18:21,491 creating build/lib/dxpy/templating/templates/python/basic 2025-06-05T20:18:21,492 copying dxpy/templating/templates/python/basic/dxapp.json -> build/lib/dxpy/templating/templates/python/basic 2025-06-05T20:18:21,494 creating build/lib/dxpy/templating/templates/python/basic/src 2025-06-05T20:18:21,495 copying dxpy/templating/templates/python/basic/src/code.py -> build/lib/dxpy/templating/templates/python/basic/src 2025-06-05T20:18:21,498 creating build/lib/dxpy/templating/templates/python/basic/test 2025-06-05T20:18:21,499 copying dxpy/templating/templates/python/basic/test/test.py -> build/lib/dxpy/templating/templates/python/basic/test 2025-06-05T20:18:21,501 creating build/lib/dxpy/templating/templates/bash/parallelized 2025-06-05T20:18:21,503 copying dxpy/templating/templates/bash/parallelized/dxapp.json -> build/lib/dxpy/templating/templates/bash/parallelized 2025-06-05T20:18:21,506 creating build/lib/dxpy/templating/templates/bash/parallelized/src 2025-06-05T20:18:21,507 copying dxpy/templating/templates/bash/parallelized/src/code.sh -> build/lib/dxpy/templating/templates/bash/parallelized/src 2025-06-05T20:18:21,509 creating build/lib/dxpy/templating/templates/bash/scatter-process-gather 2025-06-05T20:18:21,511 copying dxpy/templating/templates/bash/scatter-process-gather/dxapp.json -> build/lib/dxpy/templating/templates/bash/scatter-process-gather 2025-06-05T20:18:21,513 creating build/lib/dxpy/templating/templates/bash/scatter-process-gather/src 2025-06-05T20:18:21,514 copying dxpy/templating/templates/bash/scatter-process-gather/src/code.sh -> build/lib/dxpy/templating/templates/bash/scatter-process-gather/src 2025-06-05T20:18:21,517 creating build/lib/dxpy/templating/templates/bash/basic 2025-06-05T20:18:21,518 copying dxpy/templating/templates/bash/basic/dxapp.json -> build/lib/dxpy/templating/templates/bash/basic 2025-06-05T20:18:21,520 creating build/lib/dxpy/templating/templates/bash/basic/src 2025-06-05T20:18:21,521 copying dxpy/templating/templates/bash/basic/src/code.sh -> build/lib/dxpy/templating/templates/bash/basic/src 2025-06-05T20:18:21,523 creating build/lib/dxpy/templating/templates/nextflow 2025-06-05T20:18:21,524 copying dxpy/templating/templates/nextflow/dxapp.json -> build/lib/dxpy/templating/templates/nextflow 2025-06-05T20:18:21,527 creating build/lib/dxpy/templating/templates/nextflow/src 2025-06-05T20:18:21,528 copying dxpy/templating/templates/nextflow/src/nextflow.sh -> build/lib/dxpy/templating/templates/nextflow/src 2025-06-05T20:18:21,531 copying dxpy/dx_extract_utils/return_columns_genotype.json -> build/lib/dxpy/dx_extract_utils 2025-06-05T20:18:21,534 copying dxpy/dx_extract_utils/return_columns_genotype_only.json -> build/lib/dxpy/dx_extract_utils 2025-06-05T20:18:21,536 copying dxpy/dx_extract_utils/retrieve_allele_schema.json -> build/lib/dxpy/dx_extract_utils 2025-06-05T20:18:21,539 copying dxpy/dx_extract_utils/retrieve_annotation_schema.json -> build/lib/dxpy/dx_extract_utils 2025-06-05T20:18:21,541 copying dxpy/dx_extract_utils/Homo_sapiens_genes_manifest_vep.json -> build/lib/dxpy/dx_extract_utils 2025-06-05T20:18:21,544 copying dxpy/dx_extract_utils/column_conversion.json -> build/lib/dxpy/dx_extract_utils 2025-06-05T20:18:21,546 copying dxpy/dx_extract_utils/return_columns_allele.json -> build/lib/dxpy/dx_extract_utils 2025-06-05T20:18:21,549 copying dxpy/dx_extract_utils/Homo_sapiens_genes_manifest_staging_vep.json -> build/lib/dxpy/dx_extract_utils 2025-06-05T20:18:21,551 copying dxpy/dx_extract_utils/Homo_sapiens_genes_manifest_staging.json -> build/lib/dxpy/dx_extract_utils 2025-06-05T20:18:21,554 copying dxpy/dx_extract_utils/return_columns_annotation.json -> build/lib/dxpy/dx_extract_utils 2025-06-05T20:18:21,556 copying dxpy/dx_extract_utils/Homo_sapiens_genes_manifest.json -> build/lib/dxpy/dx_extract_utils 2025-06-05T20:18:21,558 copying dxpy/dx_extract_utils/column_conditions.json -> build/lib/dxpy/dx_extract_utils 2025-06-05T20:18:21,561 copying dxpy/dx_extract_utils/retrieve_genotype_schema.json -> build/lib/dxpy/dx_extract_utils 2025-06-05T20:18:21,564 copying dxpy/nextflow/awscli_assets.staging.json -> build/lib/dxpy/nextflow 2025-06-05T20:18:21,567 copying dxpy/nextflow/nextflow_assets.json -> build/lib/dxpy/nextflow 2025-06-05T20:18:21,570 copying dxpy/nextflow/nextaur_assets.json -> build/lib/dxpy/nextflow 2025-06-05T20:18:21,573 copying dxpy/nextflow/nextflow_assets.staging.json -> build/lib/dxpy/nextflow 2025-06-05T20:18:21,577 copying dxpy/nextflow/awscli_assets.json -> build/lib/dxpy/nextflow 2025-06-05T20:18:21,580 copying dxpy/nextflow/nextaur_assets.staging.json -> build/lib/dxpy/nextflow 2025-06-05T20:18:21,591 running build_scripts 2025-06-05T20:18:21,592 creating build/scripts-3.11 2025-06-05T20:18:21,593 copying and adjusting /tmp/pip-wheel-02ord8s5/dxpy_dd2d180e21a64928b421abf387e98748/scripts/dx-fetch-bundled-depends -> build/scripts-3.11 2025-06-05T20:18:21,595 copying and adjusting /tmp/pip-wheel-02ord8s5/dxpy_dd2d180e21a64928b421abf387e98748/scripts/dx-mount-all-inputs -> build/scripts-3.11 2025-06-05T20:18:21,597 copying and adjusting /tmp/pip-wheel-02ord8s5/dxpy_dd2d180e21a64928b421abf387e98748/scripts/dx-jobutil-dxlink -> build/scripts-3.11 2025-06-05T20:18:21,599 copying and adjusting /tmp/pip-wheel-02ord8s5/dxpy_dd2d180e21a64928b421abf387e98748/scripts/dx-clone-asset -> build/scripts-3.11 2025-06-05T20:18:21,602 copying and adjusting /tmp/pip-wheel-02ord8s5/dxpy_dd2d180e21a64928b421abf387e98748/scripts/dx-generate-dxapp -> build/scripts-3.11 2025-06-05T20:18:21,604 copying and adjusting /tmp/pip-wheel-02ord8s5/dxpy_dd2d180e21a64928b421abf387e98748/scripts/dx-log-stream -> build/scripts-3.11 2025-06-05T20:18:21,606 copying and adjusting /tmp/pip-wheel-02ord8s5/dxpy_dd2d180e21a64928b421abf387e98748/scripts/dx-docker -> build/scripts-3.11 2025-06-05T20:18:21,609 copying and adjusting /tmp/pip-wheel-02ord8s5/dxpy_dd2d180e21a64928b421abf387e98748/scripts/dx-print-bash-vars -> build/scripts-3.11 2025-06-05T20:18:21,611 copying and adjusting /tmp/pip-wheel-02ord8s5/dxpy_dd2d180e21a64928b421abf387e98748/scripts/dx-jobutil-new-job -> build/scripts-3.11 2025-06-05T20:18:21,613 copying and adjusting /tmp/pip-wheel-02ord8s5/dxpy_dd2d180e21a64928b421abf387e98748/scripts/dx-jobutil-add-output -> build/scripts-3.11 2025-06-05T20:18:21,615 copying and adjusting /tmp/pip-wheel-02ord8s5/dxpy_dd2d180e21a64928b421abf387e98748/scripts/dx-notebook-reconnect -> build/scripts-3.11 2025-06-05T20:18:21,617 copying and adjusting /tmp/pip-wheel-02ord8s5/dxpy_dd2d180e21a64928b421abf387e98748/scripts/dx-download-all-inputs -> build/scripts-3.11 2025-06-05T20:18:21,619 copying and adjusting /tmp/pip-wheel-02ord8s5/dxpy_dd2d180e21a64928b421abf387e98748/scripts/dx-upload-all-outputs -> build/scripts-3.11 2025-06-05T20:18:21,621 copying and adjusting /tmp/pip-wheel-02ord8s5/dxpy_dd2d180e21a64928b421abf387e98748/scripts/dx-jobutil-report-error -> build/scripts-3.11 2025-06-05T20:18:21,623 copying and adjusting /tmp/pip-wheel-02ord8s5/dxpy_dd2d180e21a64928b421abf387e98748/scripts/dx-jobutil-get-identity-token -> build/scripts-3.11 2025-06-05T20:18:21,625 copying and adjusting /tmp/pip-wheel-02ord8s5/dxpy_dd2d180e21a64928b421abf387e98748/scripts/dx-jobutil-parse-link -> build/scripts-3.11 2025-06-05T20:18:21,626 changing mode of build/scripts-3.11/dx-fetch-bundled-depends from 644 to 755 2025-06-05T20:18:21,627 changing mode of build/scripts-3.11/dx-mount-all-inputs from 644 to 755 2025-06-05T20:18:21,627 changing mode of build/scripts-3.11/dx-jobutil-dxlink from 644 to 755 2025-06-05T20:18:21,628 changing mode of build/scripts-3.11/dx-clone-asset from 644 to 755 2025-06-05T20:18:21,628 changing mode of build/scripts-3.11/dx-generate-dxapp from 644 to 755 2025-06-05T20:18:21,629 changing mode of build/scripts-3.11/dx-log-stream from 644 to 755 2025-06-05T20:18:21,630 changing mode of build/scripts-3.11/dx-docker from 644 to 755 2025-06-05T20:18:21,630 changing mode of build/scripts-3.11/dx-print-bash-vars from 644 to 755 2025-06-05T20:18:21,631 changing mode of build/scripts-3.11/dx-jobutil-new-job from 644 to 755 2025-06-05T20:18:21,631 changing mode of build/scripts-3.11/dx-jobutil-add-output from 644 to 755 2025-06-05T20:18:21,632 changing mode of build/scripts-3.11/dx-notebook-reconnect from 644 to 755 2025-06-05T20:18:21,632 changing mode of build/scripts-3.11/dx-download-all-inputs from 644 to 755 2025-06-05T20:18:21,633 changing mode of build/scripts-3.11/dx-upload-all-outputs from 644 to 755 2025-06-05T20:18:21,634 changing mode of build/scripts-3.11/dx-jobutil-report-error from 644 to 755 2025-06-05T20:18:21,634 changing mode of build/scripts-3.11/dx-jobutil-get-identity-token from 644 to 755 2025-06-05T20:18:21,635 changing mode of build/scripts-3.11/dx-jobutil-parse-link from 644 to 755 2025-06-05T20:18:21,663 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-06-05T20:18:21,664 !! 2025-06-05T20:18:21,665 ******************************************************************************** 2025-06-05T20:18:21,666 Please avoid running ``setup.py`` directly. 2025-06-05T20:18:21,666 Instead, use pypa/build, pypa/installer or other 2025-06-05T20:18:21,667 standards-based tools. 2025-06-05T20:18:21,668 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-06-05T20:18:21,668 or your builds will no longer be supported. 2025-06-05T20:18:21,669 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-06-05T20:18:21,669 ******************************************************************************** 2025-06-05T20:18:21,670 !! 2025-06-05T20:18:21,671 self.initialize_options() 2025-06-05T20:18:21,691 installing to build/bdist.linux-armv7l/wheel 2025-06-05T20:18:21,692 running install 2025-06-05T20:18:21,717 running install_lib 2025-06-05T20:18:21,744 creating build/bdist.linux-armv7l/wheel 2025-06-05T20:18:21,747 creating build/bdist.linux-armv7l/wheel/dxpy 2025-06-05T20:18:21,748 copying build/lib/dxpy/api.py -> build/bdist.linux-armv7l/wheel/./dxpy 2025-06-05T20:18:21,752 copying build/lib/dxpy/exceptions.py -> build/bdist.linux-armv7l/wheel/./dxpy 2025-06-05T20:18:21,754 copying build/lib/dxpy/app_categories.py -> build/bdist.linux-armv7l/wheel/./dxpy 2025-06-05T20:18:21,756 copying build/lib/dxpy/dxlog.py -> build/bdist.linux-armv7l/wheel/./dxpy 2025-06-05T20:18:21,758 creating build/bdist.linux-armv7l/wheel/dxpy/scripts 2025-06-05T20:18:21,759 copying build/lib/dxpy/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/./dxpy/scripts 2025-06-05T20:18:21,761 copying build/lib/dxpy/scripts/dx_build_app.py -> build/bdist.linux-armv7l/wheel/./dxpy/scripts 2025-06-05T20:18:21,765 copying build/lib/dxpy/scripts/dx.py -> build/bdist.linux-armv7l/wheel/./dxpy/scripts 2025-06-05T20:18:21,773 copying build/lib/dxpy/scripts/dx_build_applet.py -> build/bdist.linux-armv7l/wheel/./dxpy/scripts 2025-06-05T20:18:21,775 copying build/lib/dxpy/scripts/dx_app_wizard.py -> build/bdist.linux-armv7l/wheel/./dxpy/scripts 2025-06-05T20:18:21,778 copying build/lib/dxpy/toolkit_version.py -> build/bdist.linux-armv7l/wheel/./dxpy 2025-06-05T20:18:21,780 copying build/lib/dxpy/__init__.py -> build/bdist.linux-armv7l/wheel/./dxpy 2025-06-05T20:18:21,783 copying build/lib/dxpy/ssh_tunnel_app_support.py -> build/bdist.linux-armv7l/wheel/./dxpy 2025-06-05T20:18:21,786 copying build/lib/dxpy/compat.py -> build/bdist.linux-armv7l/wheel/./dxpy 2025-06-05T20:18:21,789 creating build/bdist.linux-armv7l/wheel/dxpy/templating 2025-06-05T20:18:21,790 copying build/lib/dxpy/templating/bash.py -> build/bdist.linux-armv7l/wheel/./dxpy/templating 2025-06-05T20:18:21,792 copying build/lib/dxpy/templating/__init__.py -> build/bdist.linux-armv7l/wheel/./dxpy/templating 2025-06-05T20:18:21,794 copying build/lib/dxpy/templating/python.py -> build/bdist.linux-armv7l/wheel/./dxpy/templating 2025-06-05T20:18:21,798 creating build/bdist.linux-armv7l/wheel/dxpy/templating/templates 2025-06-05T20:18:21,799 creating build/bdist.linux-armv7l/wheel/dxpy/templating/templates/python 2025-06-05T20:18:21,801 creating build/bdist.linux-armv7l/wheel/dxpy/templating/templates/python/parallelized 2025-06-05T20:18:21,803 creating build/bdist.linux-armv7l/wheel/dxpy/templating/templates/python/parallelized/src 2025-06-05T20:18:21,804 copying build/lib/dxpy/templating/templates/python/parallelized/src/code.py -> build/bdist.linux-armv7l/wheel/./dxpy/templating/templates/python/parallelized/src 2025-06-05T20:18:21,807 copying build/lib/dxpy/templating/templates/python/parallelized/dxapp.json -> build/bdist.linux-armv7l/wheel/./dxpy/templating/templates/python/parallelized 2025-06-05T20:18:21,809 creating build/bdist.linux-armv7l/wheel/dxpy/templating/templates/python/parallelized/test 2025-06-05T20:18:21,810 copying build/lib/dxpy/templating/templates/python/parallelized/test/test.py -> build/bdist.linux-armv7l/wheel/./dxpy/templating/templates/python/parallelized/test 2025-06-05T20:18:21,813 creating build/bdist.linux-armv7l/wheel/dxpy/templating/templates/python/scatter-process-gather 2025-06-05T20:18:21,815 creating build/bdist.linux-armv7l/wheel/dxpy/templating/templates/python/scatter-process-gather/src 2025-06-05T20:18:21,817 copying build/lib/dxpy/templating/templates/python/scatter-process-gather/src/code.py -> build/bdist.linux-armv7l/wheel/./dxpy/templating/templates/python/scatter-process-gather/src 2025-06-05T20:18:21,819 copying build/lib/dxpy/templating/templates/python/scatter-process-gather/dxapp.json -> build/bdist.linux-armv7l/wheel/./dxpy/templating/templates/python/scatter-process-gather 2025-06-05T20:18:21,822 creating build/bdist.linux-armv7l/wheel/dxpy/templating/templates/python/scatter-process-gather/test 2025-06-05T20:18:21,823 copying build/lib/dxpy/templating/templates/python/scatter-process-gather/test/test.py -> build/bdist.linux-armv7l/wheel/./dxpy/templating/templates/python/scatter-process-gather/test 2025-06-05T20:18:21,826 creating build/bdist.linux-armv7l/wheel/dxpy/templating/templates/python/basic 2025-06-05T20:18:21,827 creating build/bdist.linux-armv7l/wheel/dxpy/templating/templates/python/basic/src 2025-06-05T20:18:21,831 copying build/lib/dxpy/templating/templates/python/basic/src/code.py -> build/bdist.linux-armv7l/wheel/./dxpy/templating/templates/python/basic/src 2025-06-05T20:18:21,833 copying build/lib/dxpy/templating/templates/python/basic/dxapp.json -> build/bdist.linux-armv7l/wheel/./dxpy/templating/templates/python/basic 2025-06-05T20:18:21,836 creating build/bdist.linux-armv7l/wheel/dxpy/templating/templates/python/basic/test 2025-06-05T20:18:21,837 copying build/lib/dxpy/templating/templates/python/basic/test/test.py -> build/bdist.linux-armv7l/wheel/./dxpy/templating/templates/python/basic/test 2025-06-05T20:18:21,840 creating build/bdist.linux-armv7l/wheel/dxpy/templating/templates/bash 2025-06-05T20:18:21,842 creating build/bdist.linux-armv7l/wheel/dxpy/templating/templates/bash/parallelized 2025-06-05T20:18:21,844 creating build/bdist.linux-armv7l/wheel/dxpy/templating/templates/bash/parallelized/src 2025-06-05T20:18:21,845 copying build/lib/dxpy/templating/templates/bash/parallelized/src/code.sh -> build/bdist.linux-armv7l/wheel/./dxpy/templating/templates/bash/parallelized/src 2025-06-05T20:18:21,848 copying build/lib/dxpy/templating/templates/bash/parallelized/dxapp.json -> build/bdist.linux-armv7l/wheel/./dxpy/templating/templates/bash/parallelized 2025-06-05T20:18:21,850 creating build/bdist.linux-armv7l/wheel/dxpy/templating/templates/bash/scatter-process-gather 2025-06-05T20:18:21,852 creating build/bdist.linux-armv7l/wheel/dxpy/templating/templates/bash/scatter-process-gather/src 2025-06-05T20:18:21,853 copying build/lib/dxpy/templating/templates/bash/scatter-process-gather/src/code.sh -> build/bdist.linux-armv7l/wheel/./dxpy/templating/templates/bash/scatter-process-gather/src 2025-06-05T20:18:21,856 copying build/lib/dxpy/templating/templates/bash/scatter-process-gather/dxapp.json -> build/bdist.linux-armv7l/wheel/./dxpy/templating/templates/bash/scatter-process-gather 2025-06-05T20:18:21,859 creating build/bdist.linux-armv7l/wheel/dxpy/templating/templates/bash/basic 2025-06-05T20:18:21,860 creating build/bdist.linux-armv7l/wheel/dxpy/templating/templates/bash/basic/src 2025-06-05T20:18:21,862 copying build/lib/dxpy/templating/templates/bash/basic/src/code.sh -> build/bdist.linux-armv7l/wheel/./dxpy/templating/templates/bash/basic/src 2025-06-05T20:18:21,864 copying build/lib/dxpy/templating/templates/bash/basic/dxapp.json -> build/bdist.linux-armv7l/wheel/./dxpy/templating/templates/bash/basic 2025-06-05T20:18:21,866 creating build/bdist.linux-armv7l/wheel/dxpy/templating/templates/nextflow 2025-06-05T20:18:21,868 creating build/bdist.linux-armv7l/wheel/dxpy/templating/templates/nextflow/src 2025-06-05T20:18:21,870 copying build/lib/dxpy/templating/templates/nextflow/src/nextflow.sh -> build/bdist.linux-armv7l/wheel/./dxpy/templating/templates/nextflow/src 2025-06-05T20:18:21,873 copying build/lib/dxpy/templating/templates/nextflow/dxapp.json -> build/bdist.linux-armv7l/wheel/./dxpy/templating/templates/nextflow 2025-06-05T20:18:21,875 copying build/lib/dxpy/templating/templates/Readme.md -> build/bdist.linux-armv7l/wheel/./dxpy/templating/templates 2025-06-05T20:18:21,877 copying build/lib/dxpy/templating/utils.py -> build/bdist.linux-armv7l/wheel/./dxpy/templating 2025-06-05T20:18:21,880 copying build/lib/dxpy/app_builder.py -> build/bdist.linux-armv7l/wheel/./dxpy 2025-06-05T20:18:21,883 copying build/lib/dxpy/system_requirements.py -> build/bdist.linux-armv7l/wheel/./dxpy 2025-06-05T20:18:21,886 creating build/bdist.linux-armv7l/wheel/dxpy/dx_extract_utils 2025-06-05T20:18:21,888 copying build/lib/dxpy/dx_extract_utils/return_columns_genotype.json -> build/bdist.linux-armv7l/wheel/./dxpy/dx_extract_utils 2025-06-05T20:18:21,890 copying build/lib/dxpy/dx_extract_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./dxpy/dx_extract_utils 2025-06-05T20:18:21,891 copying build/lib/dxpy/dx_extract_utils/input_validation_somatic.py -> build/bdist.linux-armv7l/wheel/./dxpy/dx_extract_utils 2025-06-05T20:18:21,894 copying build/lib/dxpy/dx_extract_utils/input_validation.py -> build/bdist.linux-armv7l/wheel/./dxpy/dx_extract_utils 2025-06-05T20:18:21,896 copying build/lib/dxpy/dx_extract_utils/return_columns_genotype_only.json -> build/bdist.linux-armv7l/wheel/./dxpy/dx_extract_utils 2025-06-05T20:18:21,898 copying build/lib/dxpy/dx_extract_utils/retrieve_allele_schema.json -> build/bdist.linux-armv7l/wheel/./dxpy/dx_extract_utils 2025-06-05T20:18:21,901 copying build/lib/dxpy/dx_extract_utils/filter_to_payload.py -> build/bdist.linux-armv7l/wheel/./dxpy/dx_extract_utils 2025-06-05T20:18:21,903 copying build/lib/dxpy/dx_extract_utils/retrieve_annotation_schema.json -> build/bdist.linux-armv7l/wheel/./dxpy/dx_extract_utils 2025-06-05T20:18:21,905 copying build/lib/dxpy/dx_extract_utils/Homo_sapiens_genes_manifest_vep.json -> build/bdist.linux-armv7l/wheel/./dxpy/dx_extract_utils 2025-06-05T20:18:21,907 copying build/lib/dxpy/dx_extract_utils/column_conversion.json -> build/bdist.linux-armv7l/wheel/./dxpy/dx_extract_utils 2025-06-05T20:18:21,910 copying build/lib/dxpy/dx_extract_utils/germline_utils.py -> build/bdist.linux-armv7l/wheel/./dxpy/dx_extract_utils 2025-06-05T20:18:21,912 copying build/lib/dxpy/dx_extract_utils/return_columns_allele.json -> build/bdist.linux-armv7l/wheel/./dxpy/dx_extract_utils 2025-06-05T20:18:21,914 copying build/lib/dxpy/dx_extract_utils/Homo_sapiens_genes_manifest_staging_vep.json -> build/bdist.linux-armv7l/wheel/./dxpy/dx_extract_utils 2025-06-05T20:18:21,916 copying build/lib/dxpy/dx_extract_utils/cohort_filter_payload.py -> build/bdist.linux-armv7l/wheel/./dxpy/dx_extract_utils 2025-06-05T20:18:21,919 copying build/lib/dxpy/dx_extract_utils/Homo_sapiens_genes_manifest_staging.json -> build/bdist.linux-armv7l/wheel/./dxpy/dx_extract_utils 2025-06-05T20:18:21,921 copying build/lib/dxpy/dx_extract_utils/retrieve_bins.py -> build/bdist.linux-armv7l/wheel/./dxpy/dx_extract_utils 2025-06-05T20:18:21,923 copying build/lib/dxpy/dx_extract_utils/return_columns_annotation.json -> build/bdist.linux-armv7l/wheel/./dxpy/dx_extract_utils 2025-06-05T20:18:21,924 copying build/lib/dxpy/dx_extract_utils/somatic_filter_payload.py -> build/bdist.linux-armv7l/wheel/./dxpy/dx_extract_utils 2025-06-05T20:18:21,927 copying build/lib/dxpy/dx_extract_utils/Homo_sapiens_genes_manifest.json -> build/bdist.linux-armv7l/wheel/./dxpy/dx_extract_utils 2025-06-05T20:18:21,929 copying build/lib/dxpy/dx_extract_utils/column_conditions.json -> build/bdist.linux-armv7l/wheel/./dxpy/dx_extract_utils 2025-06-05T20:18:21,931 copying build/lib/dxpy/dx_extract_utils/retrieve_genotype_schema.json -> build/bdist.linux-armv7l/wheel/./dxpy/dx_extract_utils 2025-06-05T20:18:21,934 creating build/bdist.linux-armv7l/wheel/dxpy/nextflow 2025-06-05T20:18:21,936 copying build/lib/dxpy/nextflow/nextflow_builder.py -> build/bdist.linux-armv7l/wheel/./dxpy/nextflow 2025-06-05T20:18:21,939 copying build/lib/dxpy/nextflow/awscli_assets.staging.json -> build/bdist.linux-armv7l/wheel/./dxpy/nextflow 2025-06-05T20:18:21,941 copying build/lib/dxpy/nextflow/ImageRef.py -> build/bdist.linux-armv7l/wheel/./dxpy/nextflow 2025-06-05T20:18:21,943 copying build/lib/dxpy/nextflow/collect_images.py -> build/bdist.linux-armv7l/wheel/./dxpy/nextflow 2025-06-05T20:18:21,946 copying build/lib/dxpy/nextflow/ImageRefFactory.py -> build/bdist.linux-armv7l/wheel/./dxpy/nextflow 2025-06-05T20:18:21,947 copying build/lib/dxpy/nextflow/__init__.py -> build/bdist.linux-armv7l/wheel/./dxpy/nextflow 2025-06-05T20:18:21,949 copying build/lib/dxpy/nextflow/nextflow_assets.json -> build/bdist.linux-armv7l/wheel/./dxpy/nextflow 2025-06-05T20:18:21,951 copying build/lib/dxpy/nextflow/nextflow_templates.py -> build/bdist.linux-armv7l/wheel/./dxpy/nextflow 2025-06-05T20:18:21,953 copying build/lib/dxpy/nextflow/nextaur_assets.json -> build/bdist.linux-armv7l/wheel/./dxpy/nextflow 2025-06-05T20:18:21,955 copying build/lib/dxpy/nextflow/nextflow_assets.staging.json -> build/bdist.linux-armv7l/wheel/./dxpy/nextflow 2025-06-05T20:18:21,957 copying build/lib/dxpy/nextflow/nextflow_utils.py -> build/bdist.linux-armv7l/wheel/./dxpy/nextflow 2025-06-05T20:18:21,960 copying build/lib/dxpy/nextflow/awscli_assets.json -> build/bdist.linux-armv7l/wheel/./dxpy/nextflow 2025-06-05T20:18:21,961 copying build/lib/dxpy/nextflow/nextaur_assets.staging.json -> build/bdist.linux-armv7l/wheel/./dxpy/nextflow 2025-06-05T20:18:21,964 creating build/bdist.linux-armv7l/wheel/dxpy/packages 2025-06-05T20:18:21,965 copying build/lib/dxpy/packages/__init__.py -> build/bdist.linux-armv7l/wheel/./dxpy/packages 2025-06-05T20:18:21,968 creating build/bdist.linux-armv7l/wheel/dxpy/bindings 2025-06-05T20:18:21,969 copying build/lib/dxpy/bindings/dxapp.py -> build/bdist.linux-armv7l/wheel/./dxpy/bindings 2025-06-05T20:18:21,972 copying build/lib/dxpy/bindings/dxdataobject_functions.py -> build/bdist.linux-armv7l/wheel/./dxpy/bindings 2025-06-05T20:18:21,975 copying build/lib/dxpy/bindings/dxrecord.py -> build/bdist.linux-armv7l/wheel/./dxpy/bindings 2025-06-05T20:18:21,977 copying build/lib/dxpy/bindings/mount_all_inputs.py -> build/bdist.linux-armv7l/wheel/./dxpy/bindings 2025-06-05T20:18:21,980 copying build/lib/dxpy/bindings/dxfile_functions.py -> build/bdist.linux-armv7l/wheel/./dxpy/bindings 2025-06-05T20:18:21,983 copying build/lib/dxpy/bindings/__init__.py -> build/bdist.linux-armv7l/wheel/./dxpy/bindings 2025-06-05T20:18:21,985 copying build/lib/dxpy/bindings/dxapp_container_functions.py -> build/bdist.linux-armv7l/wheel/./dxpy/bindings 2025-06-05T20:18:21,988 copying build/lib/dxpy/bindings/dxdatabase.py -> build/bdist.linux-armv7l/wheel/./dxpy/bindings 2025-06-05T20:18:21,990 copying build/lib/dxpy/bindings/dxjob.py -> build/bdist.linux-armv7l/wheel/./dxpy/bindings 2025-06-05T20:18:21,994 creating build/bdist.linux-armv7l/wheel/dxpy/bindings/apollo 2025-06-05T20:18:21,995 copying build/lib/dxpy/bindings/apollo/__init__.py -> build/bdist.linux-armv7l/wheel/./dxpy/bindings/apollo 2025-06-05T20:18:21,997 creating build/bdist.linux-armv7l/wheel/dxpy/bindings/apollo/schemas 2025-06-05T20:18:21,998 copying build/lib/dxpy/bindings/apollo/schemas/__init__.py -> build/bdist.linux-armv7l/wheel/./dxpy/bindings/apollo/schemas 2025-06-05T20:18:22,000 copying build/lib/dxpy/bindings/apollo/schemas/input_arguments_validation_schemas.py -> build/bdist.linux-armv7l/wheel/./dxpy/bindings/apollo/schemas 2025-06-05T20:18:22,002 copying build/lib/dxpy/bindings/apollo/schemas/assay_filtering_conditions.py -> build/bdist.linux-armv7l/wheel/./dxpy/bindings/apollo/schemas 2025-06-05T20:18:22,004 copying build/lib/dxpy/bindings/apollo/schemas/assay_filtering_json_schemas.py -> build/bdist.linux-armv7l/wheel/./dxpy/bindings/apollo/schemas 2025-06-05T20:18:22,006 copying build/lib/dxpy/bindings/apollo/dataset.py -> build/bdist.linux-armv7l/wheel/./dxpy/bindings/apollo 2025-06-05T20:18:22,009 copying build/lib/dxpy/bindings/apollo/vizclient.py -> build/bdist.linux-armv7l/wheel/./dxpy/bindings/apollo 2025-06-05T20:18:22,011 copying build/lib/dxpy/bindings/apollo/cmd_line_options_validator.py -> build/bdist.linux-armv7l/wheel/./dxpy/bindings/apollo 2025-06-05T20:18:22,013 copying build/lib/dxpy/bindings/apollo/vizserver_filters_from_json_parser.py -> build/bdist.linux-armv7l/wheel/./dxpy/bindings/apollo 2025-06-05T20:18:22,016 copying build/lib/dxpy/bindings/apollo/json_validation_by_schema.py -> build/bdist.linux-armv7l/wheel/./dxpy/bindings/apollo 2025-06-05T20:18:22,019 copying build/lib/dxpy/bindings/apollo/vizserver_payload_builder.py -> build/bdist.linux-armv7l/wheel/./dxpy/bindings/apollo 2025-06-05T20:18:22,021 copying build/lib/dxpy/bindings/apollo/data_transformations.py -> build/bdist.linux-armv7l/wheel/./dxpy/bindings/apollo 2025-06-05T20:18:22,023 copying build/lib/dxpy/bindings/dxdatabase_functions.py -> build/bdist.linux-armv7l/wheel/./dxpy/bindings 2025-06-05T20:18:22,026 copying build/lib/dxpy/bindings/download_all_inputs.py -> build/bdist.linux-armv7l/wheel/./dxpy/bindings 2025-06-05T20:18:22,028 copying build/lib/dxpy/bindings/dxworkflow.py -> build/bdist.linux-armv7l/wheel/./dxpy/bindings 2025-06-05T20:18:22,031 copying build/lib/dxpy/bindings/dxfile.py -> build/bdist.linux-armv7l/wheel/./dxpy/bindings 2025-06-05T20:18:22,034 copying build/lib/dxpy/bindings/dxproject.py -> build/bdist.linux-armv7l/wheel/./dxpy/bindings 2025-06-05T20:18:22,036 copying build/lib/dxpy/bindings/dxanalysis.py -> build/bdist.linux-armv7l/wheel/./dxpy/bindings 2025-06-05T20:18:22,039 copying build/lib/dxpy/bindings/auth.py -> build/bdist.linux-armv7l/wheel/./dxpy/bindings 2025-06-05T20:18:22,041 copying build/lib/dxpy/bindings/dxapplet.py -> build/bdist.linux-armv7l/wheel/./dxpy/bindings 2025-06-05T20:18:22,043 copying build/lib/dxpy/bindings/search.py -> build/bdist.linux-armv7l/wheel/./dxpy/bindings 2025-06-05T20:18:22,047 copying build/lib/dxpy/bindings/dxglobalworkflow.py -> build/bdist.linux-armv7l/wheel/./dxpy/bindings 2025-06-05T20:18:22,050 creating build/bdist.linux-armv7l/wheel/dxpy/utils 2025-06-05T20:18:22,052 copying build/lib/dxpy/utils/executable_unbuilder.py -> build/bdist.linux-armv7l/wheel/./dxpy/utils 2025-06-05T20:18:22,055 copying build/lib/dxpy/utils/genomic_utils.py -> build/bdist.linux-armv7l/wheel/./dxpy/utils 2025-06-05T20:18:22,056 copying build/lib/dxpy/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./dxpy/utils 2025-06-05T20:18:22,059 copying build/lib/dxpy/utils/config.py -> build/bdist.linux-armv7l/wheel/./dxpy/utils 2025-06-05T20:18:22,062 copying build/lib/dxpy/utils/batch_utils.py -> build/bdist.linux-armv7l/wheel/./dxpy/utils 2025-06-05T20:18:22,064 copying build/lib/dxpy/utils/pretty_print.py -> build/bdist.linux-armv7l/wheel/./dxpy/utils 2025-06-05T20:18:22,067 copying build/lib/dxpy/utils/printing.py -> build/bdist.linux-armv7l/wheel/./dxpy/utils 2025-06-05T20:18:22,069 copying build/lib/dxpy/utils/completer.py -> build/bdist.linux-armv7l/wheel/./dxpy/utils 2025-06-05T20:18:22,072 copying build/lib/dxpy/utils/file_load_utils.py -> build/bdist.linux-armv7l/wheel/./dxpy/utils 2025-06-05T20:18:22,074 copying build/lib/dxpy/utils/version.py -> build/bdist.linux-armv7l/wheel/./dxpy/utils 2025-06-05T20:18:22,076 copying build/lib/dxpy/utils/job_log_client.py -> build/bdist.linux-armv7l/wheel/./dxpy/utils 2025-06-05T20:18:22,079 copying build/lib/dxpy/utils/file_handle.py -> build/bdist.linux-armv7l/wheel/./dxpy/utils 2025-06-05T20:18:22,081 copying build/lib/dxpy/utils/pathmatch.py -> build/bdist.linux-armv7l/wheel/./dxpy/utils 2025-06-05T20:18:22,083 copying build/lib/dxpy/utils/exec_utils.py -> build/bdist.linux-armv7l/wheel/./dxpy/utils 2025-06-05T20:18:22,086 copying build/lib/dxpy/utils/resolver.py -> build/bdist.linux-armv7l/wheel/./dxpy/utils 2025-06-05T20:18:22,090 copying build/lib/dxpy/utils/spelling_corrector.py -> build/bdist.linux-armv7l/wheel/./dxpy/utils 2025-06-05T20:18:22,092 copying build/lib/dxpy/utils/local_exec_utils.py -> build/bdist.linux-armv7l/wheel/./dxpy/utils 2025-06-05T20:18:22,096 copying build/lib/dxpy/utils/describe.py -> build/bdist.linux-armv7l/wheel/./dxpy/utils 2025-06-05T20:18:22,099 copying build/lib/dxpy/workflow_builder.py -> build/bdist.linux-armv7l/wheel/./dxpy 2025-06-05T20:18:22,102 copying build/lib/dxpy/asset_builder.py -> build/bdist.linux-armv7l/wheel/./dxpy 2025-06-05T20:18:22,105 creating build/bdist.linux-armv7l/wheel/dxpy/cli 2025-06-05T20:18:22,106 copying build/lib/dxpy/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./dxpy/cli 2025-06-05T20:18:22,108 copying build/lib/dxpy/cli/help_messages.py -> build/bdist.linux-armv7l/wheel/./dxpy/cli 2025-06-05T20:18:22,110 copying build/lib/dxpy/cli/org.py -> build/bdist.linux-armv7l/wheel/./dxpy/cli 2025-06-05T20:18:22,112 copying build/lib/dxpy/cli/output_handling.py -> build/bdist.linux-armv7l/wheel/./dxpy/cli 2025-06-05T20:18:22,115 copying build/lib/dxpy/cli/workflow.py -> build/bdist.linux-armv7l/wheel/./dxpy/cli 2025-06-05T20:18:22,117 copying build/lib/dxpy/cli/cp.py -> build/bdist.linux-armv7l/wheel/./dxpy/cli 2025-06-05T20:18:22,120 copying build/lib/dxpy/cli/download.py -> build/bdist.linux-armv7l/wheel/./dxpy/cli 2025-06-05T20:18:22,122 copying build/lib/dxpy/cli/parsers.py -> build/bdist.linux-armv7l/wheel/./dxpy/cli 2025-06-05T20:18:22,125 copying build/lib/dxpy/cli/dataset_utilities.py -> build/bdist.linux-armv7l/wheel/./dxpy/cli 2025-06-05T20:18:22,130 copying build/lib/dxpy/cli/exec_io.py -> build/bdist.linux-armv7l/wheel/./dxpy/cli 2025-06-05T20:18:22,133 copying build/lib/dxpy/executable_builder.py -> build/bdist.linux-armv7l/wheel/./dxpy 2025-06-05T20:18:22,135 running install_egg_info 2025-06-05T20:18:22,176 running egg_info 2025-06-05T20:18:22,205 writing dxpy.egg-info/PKG-INFO 2025-06-05T20:18:22,210 writing dependency_links to dxpy.egg-info/dependency_links.txt 2025-06-05T20:18:22,212 writing entry points to dxpy.egg-info/entry_points.txt 2025-06-05T20:18:22,217 writing requirements to dxpy.egg-info/requires.txt 2025-06-05T20:18:22,218 writing top-level names to dxpy.egg-info/top_level.txt 2025-06-05T20:18:22,269 reading manifest file 'dxpy.egg-info/SOURCES.txt' 2025-06-05T20:18:22,280 reading manifest template 'MANIFEST.in' 2025-06-05T20:18:22,306 writing manifest file 'dxpy.egg-info/SOURCES.txt' 2025-06-05T20:18:22,308 Copying dxpy.egg-info to build/bdist.linux-armv7l/wheel/./dxpy-0.395.0-py3.11.egg-info 2025-06-05T20:18:22,322 running install_scripts 2025-06-05T20:18:22,323 creating build/bdist.linux-armv7l/wheel/dxpy-0.395.0.data/scripts 2025-06-05T20:18:22,325 copying build/scripts-3.11/dx-fetch-bundled-depends -> build/bdist.linux-armv7l/wheel/dxpy-0.395.0.data/scripts 2025-06-05T20:18:22,327 copying build/scripts-3.11/dx-mount-all-inputs -> build/bdist.linux-armv7l/wheel/dxpy-0.395.0.data/scripts 2025-06-05T20:18:22,329 copying build/scripts-3.11/dx-jobutil-dxlink -> build/bdist.linux-armv7l/wheel/dxpy-0.395.0.data/scripts 2025-06-05T20:18:22,331 copying build/scripts-3.11/dx-clone-asset -> build/bdist.linux-armv7l/wheel/dxpy-0.395.0.data/scripts 2025-06-05T20:18:22,333 copying build/scripts-3.11/dx-generate-dxapp -> build/bdist.linux-armv7l/wheel/dxpy-0.395.0.data/scripts 2025-06-05T20:18:22,336 copying build/scripts-3.11/dx-log-stream -> build/bdist.linux-armv7l/wheel/dxpy-0.395.0.data/scripts 2025-06-05T20:18:22,338 copying build/scripts-3.11/dx-docker -> build/bdist.linux-armv7l/wheel/dxpy-0.395.0.data/scripts 2025-06-05T20:18:22,341 copying build/scripts-3.11/dx-print-bash-vars -> build/bdist.linux-armv7l/wheel/dxpy-0.395.0.data/scripts 2025-06-05T20:18:22,343 copying build/scripts-3.11/dx-jobutil-new-job -> build/bdist.linux-armv7l/wheel/dxpy-0.395.0.data/scripts 2025-06-05T20:18:22,346 copying build/scripts-3.11/dx-jobutil-add-output -> build/bdist.linux-armv7l/wheel/dxpy-0.395.0.data/scripts 2025-06-05T20:18:22,349 copying build/scripts-3.11/dx-notebook-reconnect -> build/bdist.linux-armv7l/wheel/dxpy-0.395.0.data/scripts 2025-06-05T20:18:22,351 copying build/scripts-3.11/dx-download-all-inputs -> build/bdist.linux-armv7l/wheel/dxpy-0.395.0.data/scripts 2025-06-05T20:18:22,353 copying build/scripts-3.11/dx-upload-all-outputs -> build/bdist.linux-armv7l/wheel/dxpy-0.395.0.data/scripts 2025-06-05T20:18:22,355 copying build/scripts-3.11/dx-jobutil-report-error -> build/bdist.linux-armv7l/wheel/dxpy-0.395.0.data/scripts 2025-06-05T20:18:22,357 copying build/scripts-3.11/dx-jobutil-get-identity-token -> build/bdist.linux-armv7l/wheel/dxpy-0.395.0.data/scripts 2025-06-05T20:18:22,359 copying build/scripts-3.11/dx-jobutil-parse-link -> build/bdist.linux-armv7l/wheel/dxpy-0.395.0.data/scripts 2025-06-05T20:18:22,361 changing mode of build/bdist.linux-armv7l/wheel/dxpy-0.395.0.data/scripts/dx-fetch-bundled-depends to 755 2025-06-05T20:18:22,361 changing mode of build/bdist.linux-armv7l/wheel/dxpy-0.395.0.data/scripts/dx-mount-all-inputs to 755 2025-06-05T20:18:22,362 changing mode of build/bdist.linux-armv7l/wheel/dxpy-0.395.0.data/scripts/dx-jobutil-dxlink to 755 2025-06-05T20:18:22,362 changing mode of build/bdist.linux-armv7l/wheel/dxpy-0.395.0.data/scripts/dx-clone-asset to 755 2025-06-05T20:18:22,363 changing mode of build/bdist.linux-armv7l/wheel/dxpy-0.395.0.data/scripts/dx-generate-dxapp to 755 2025-06-05T20:18:22,364 changing mode of build/bdist.linux-armv7l/wheel/dxpy-0.395.0.data/scripts/dx-log-stream to 755 2025-06-05T20:18:22,364 changing mode of build/bdist.linux-armv7l/wheel/dxpy-0.395.0.data/scripts/dx-docker to 755 2025-06-05T20:18:22,365 changing mode of build/bdist.linux-armv7l/wheel/dxpy-0.395.0.data/scripts/dx-print-bash-vars to 755 2025-06-05T20:18:22,365 changing mode of build/bdist.linux-armv7l/wheel/dxpy-0.395.0.data/scripts/dx-jobutil-new-job to 755 2025-06-05T20:18:22,366 changing mode of build/bdist.linux-armv7l/wheel/dxpy-0.395.0.data/scripts/dx-jobutil-add-output to 755 2025-06-05T20:18:22,367 changing mode of build/bdist.linux-armv7l/wheel/dxpy-0.395.0.data/scripts/dx-notebook-reconnect to 755 2025-06-05T20:18:22,367 changing mode of build/bdist.linux-armv7l/wheel/dxpy-0.395.0.data/scripts/dx-download-all-inputs to 755 2025-06-05T20:18:22,368 changing mode of build/bdist.linux-armv7l/wheel/dxpy-0.395.0.data/scripts/dx-upload-all-outputs to 755 2025-06-05T20:18:22,368 changing mode of build/bdist.linux-armv7l/wheel/dxpy-0.395.0.data/scripts/dx-jobutil-report-error to 755 2025-06-05T20:18:22,369 changing mode of build/bdist.linux-armv7l/wheel/dxpy-0.395.0.data/scripts/dx-jobutil-get-identity-token to 755 2025-06-05T20:18:22,370 changing mode of build/bdist.linux-armv7l/wheel/dxpy-0.395.0.data/scripts/dx-jobutil-parse-link to 755 2025-06-05T20:18:22,379 creating build/bdist.linux-armv7l/wheel/dxpy-0.395.0.dist-info/WHEEL 2025-06-05T20:18:22,382 creating '/tmp/pip-wheel-8t7ze42c/dxpy-0.395.0-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-06-05T20:18:22,391 adding 'dxpy/__init__.py' 2025-06-05T20:18:22,396 adding 'dxpy/api.py' 2025-06-05T20:18:22,402 adding 'dxpy/app_builder.py' 2025-06-05T20:18:22,404 adding 'dxpy/app_categories.py' 2025-06-05T20:18:22,406 adding 'dxpy/asset_builder.py' 2025-06-05T20:18:22,408 adding 'dxpy/compat.py' 2025-06-05T20:18:22,410 adding 'dxpy/dxlog.py' 2025-06-05T20:18:22,412 adding 'dxpy/exceptions.py' 2025-06-05T20:18:22,414 adding 'dxpy/executable_builder.py' 2025-06-05T20:18:22,416 adding 'dxpy/ssh_tunnel_app_support.py' 2025-06-05T20:18:22,418 adding 'dxpy/system_requirements.py' 2025-06-05T20:18:22,419 adding 'dxpy/toolkit_version.py' 2025-06-05T20:18:22,424 adding 'dxpy/workflow_builder.py' 2025-06-05T20:18:22,428 adding 'dxpy/bindings/__init__.py' 2025-06-05T20:18:22,429 adding 'dxpy/bindings/auth.py' 2025-06-05T20:18:22,432 adding 'dxpy/bindings/download_all_inputs.py' 2025-06-05T20:18:22,433 adding 'dxpy/bindings/dxanalysis.py' 2025-06-05T20:18:22,436 adding 'dxpy/bindings/dxapp.py' 2025-06-05T20:18:22,437 adding 'dxpy/bindings/dxapp_container_functions.py' 2025-06-05T20:18:22,440 adding 'dxpy/bindings/dxapplet.py' 2025-06-05T20:18:22,443 adding 'dxpy/bindings/dxdatabase.py' 2025-06-05T20:18:22,445 adding 'dxpy/bindings/dxdatabase_functions.py' 2025-06-05T20:18:22,447 adding 'dxpy/bindings/dxdataobject_functions.py' 2025-06-05T20:18:22,452 adding 'dxpy/bindings/dxfile.py' 2025-06-05T20:18:22,457 adding 'dxpy/bindings/dxfile_functions.py' 2025-06-05T20:18:22,459 adding 'dxpy/bindings/dxglobalworkflow.py' 2025-06-05T20:18:22,461 adding 'dxpy/bindings/dxjob.py' 2025-06-05T20:18:22,464 adding 'dxpy/bindings/dxproject.py' 2025-06-05T20:18:22,465 adding 'dxpy/bindings/dxrecord.py' 2025-06-05T20:18:22,469 adding 'dxpy/bindings/dxworkflow.py' 2025-06-05T20:18:22,470 adding 'dxpy/bindings/mount_all_inputs.py' 2025-06-05T20:18:22,475 adding 'dxpy/bindings/search.py' 2025-06-05T20:18:22,477 adding 'dxpy/bindings/apollo/__init__.py' 2025-06-05T20:18:22,478 adding 'dxpy/bindings/apollo/cmd_line_options_validator.py' 2025-06-05T20:18:22,480 adding 'dxpy/bindings/apollo/data_transformations.py' 2025-06-05T20:18:22,481 adding 'dxpy/bindings/apollo/dataset.py' 2025-06-05T20:18:22,483 adding 'dxpy/bindings/apollo/json_validation_by_schema.py' 2025-06-05T20:18:22,484 adding 'dxpy/bindings/apollo/vizclient.py' 2025-06-05T20:18:22,487 adding 'dxpy/bindings/apollo/vizserver_filters_from_json_parser.py' 2025-06-05T20:18:22,488 adding 'dxpy/bindings/apollo/vizserver_payload_builder.py' 2025-06-05T20:18:22,490 adding 'dxpy/bindings/apollo/schemas/__init__.py' 2025-06-05T20:18:22,491 adding 'dxpy/bindings/apollo/schemas/assay_filtering_conditions.py' 2025-06-05T20:18:22,492 adding 'dxpy/bindings/apollo/schemas/assay_filtering_json_schemas.py' 2025-06-05T20:18:22,494 adding 'dxpy/bindings/apollo/schemas/input_arguments_validation_schemas.py' 2025-06-05T20:18:22,496 adding 'dxpy/cli/__init__.py' 2025-06-05T20:18:22,498 adding 'dxpy/cli/cp.py' 2025-06-05T20:18:22,510 adding 'dxpy/cli/dataset_utilities.py' 2025-06-05T20:18:22,513 adding 'dxpy/cli/download.py' 2025-06-05T20:18:22,518 adding 'dxpy/cli/exec_io.py' 2025-06-05T20:18:22,520 adding 'dxpy/cli/help_messages.py' 2025-06-05T20:18:22,522 adding 'dxpy/cli/org.py' 2025-06-05T20:18:22,523 adding 'dxpy/cli/output_handling.py' 2025-06-05T20:18:22,527 adding 'dxpy/cli/parsers.py' 2025-06-05T20:18:22,529 adding 'dxpy/cli/workflow.py' 2025-06-05T20:18:22,531 adding 'dxpy/dx_extract_utils/Homo_sapiens_genes_manifest.json' 2025-06-05T20:18:22,532 adding 'dxpy/dx_extract_utils/Homo_sapiens_genes_manifest_staging.json' 2025-06-05T20:18:22,533 adding 'dxpy/dx_extract_utils/Homo_sapiens_genes_manifest_staging_vep.json' 2025-06-05T20:18:22,535 adding 'dxpy/dx_extract_utils/Homo_sapiens_genes_manifest_vep.json' 2025-06-05T20:18:22,536 adding 'dxpy/dx_extract_utils/__init__.py' 2025-06-05T20:18:22,537 adding 'dxpy/dx_extract_utils/cohort_filter_payload.py' 2025-06-05T20:18:22,539 adding 'dxpy/dx_extract_utils/column_conditions.json' 2025-06-05T20:18:22,540 adding 'dxpy/dx_extract_utils/column_conversion.json' 2025-06-05T20:18:22,542 adding 'dxpy/dx_extract_utils/filter_to_payload.py' 2025-06-05T20:18:22,544 adding 'dxpy/dx_extract_utils/germline_utils.py' 2025-06-05T20:18:22,547 adding 'dxpy/dx_extract_utils/input_validation.py' 2025-06-05T20:18:22,548 adding 'dxpy/dx_extract_utils/input_validation_somatic.py' 2025-06-05T20:18:22,549 adding 'dxpy/dx_extract_utils/retrieve_allele_schema.json' 2025-06-05T20:18:22,551 adding 'dxpy/dx_extract_utils/retrieve_annotation_schema.json' 2025-06-05T20:18:22,552 adding 'dxpy/dx_extract_utils/retrieve_bins.py' 2025-06-05T20:18:22,553 adding 'dxpy/dx_extract_utils/retrieve_genotype_schema.json' 2025-06-05T20:18:22,555 adding 'dxpy/dx_extract_utils/return_columns_allele.json' 2025-06-05T20:18:22,556 adding 'dxpy/dx_extract_utils/return_columns_annotation.json' 2025-06-05T20:18:22,557 adding 'dxpy/dx_extract_utils/return_columns_genotype.json' 2025-06-05T20:18:22,558 adding 'dxpy/dx_extract_utils/return_columns_genotype_only.json' 2025-06-05T20:18:22,560 adding 'dxpy/dx_extract_utils/somatic_filter_payload.py' 2025-06-05T20:18:22,563 adding 'dxpy/nextflow/ImageRef.py' 2025-06-05T20:18:22,564 adding 'dxpy/nextflow/ImageRefFactory.py' 2025-06-05T20:18:22,565 adding 'dxpy/nextflow/__init__.py' 2025-06-05T20:18:22,566 adding 'dxpy/nextflow/awscli_assets.json' 2025-06-05T20:18:22,568 adding 'dxpy/nextflow/awscli_assets.staging.json' 2025-06-05T20:18:22,569 adding 'dxpy/nextflow/collect_images.py' 2025-06-05T20:18:22,570 adding 'dxpy/nextflow/nextaur_assets.json' 2025-06-05T20:18:22,571 adding 'dxpy/nextflow/nextaur_assets.staging.json' 2025-06-05T20:18:22,573 adding 'dxpy/nextflow/nextflow_assets.json' 2025-06-05T20:18:22,574 adding 'dxpy/nextflow/nextflow_assets.staging.json' 2025-06-05T20:18:22,576 adding 'dxpy/nextflow/nextflow_builder.py' 2025-06-05T20:18:22,577 adding 'dxpy/nextflow/nextflow_templates.py' 2025-06-05T20:18:22,579 adding 'dxpy/nextflow/nextflow_utils.py' 2025-06-05T20:18:22,581 adding 'dxpy/packages/__init__.py' 2025-06-05T20:18:22,582 adding 'dxpy/scripts/__init__.py' 2025-06-05T20:18:22,629 adding 'dxpy/scripts/dx.py' 2025-06-05T20:18:22,634 adding 'dxpy/scripts/dx_app_wizard.py' 2025-06-05T20:18:22,641 adding 'dxpy/scripts/dx_build_app.py' 2025-06-05T20:18:22,643 adding 'dxpy/scripts/dx_build_applet.py' 2025-06-05T20:18:22,644 adding 'dxpy/templating/__init__.py' 2025-06-05T20:18:22,646 adding 'dxpy/templating/bash.py' 2025-06-05T20:18:22,647 adding 'dxpy/templating/python.py' 2025-06-05T20:18:22,650 adding 'dxpy/templating/utils.py' 2025-06-05T20:18:22,652 adding 'dxpy/templating/templates/Readme.md' 2025-06-05T20:18:22,654 adding 'dxpy/templating/templates/bash/basic/dxapp.json' 2025-06-05T20:18:22,655 adding 'dxpy/templating/templates/bash/basic/src/code.sh' 2025-06-05T20:18:22,657 adding 'dxpy/templating/templates/bash/parallelized/dxapp.json' 2025-06-05T20:18:22,659 adding 'dxpy/templating/templates/bash/parallelized/src/code.sh' 2025-06-05T20:18:22,661 adding 'dxpy/templating/templates/bash/scatter-process-gather/dxapp.json' 2025-06-05T20:18:22,663 adding 'dxpy/templating/templates/bash/scatter-process-gather/src/code.sh' 2025-06-05T20:18:22,665 adding 'dxpy/templating/templates/nextflow/dxapp.json' 2025-06-05T20:18:22,669 adding 'dxpy/templating/templates/nextflow/src/nextflow.sh' 2025-06-05T20:18:22,671 adding 'dxpy/templating/templates/python/basic/dxapp.json' 2025-06-05T20:18:22,673 adding 'dxpy/templating/templates/python/basic/src/code.py' 2025-06-05T20:18:22,675 adding 'dxpy/templating/templates/python/basic/test/test.py' 2025-06-05T20:18:22,677 adding 'dxpy/templating/templates/python/parallelized/dxapp.json' 2025-06-05T20:18:22,679 adding 'dxpy/templating/templates/python/parallelized/src/code.py' 2025-06-05T20:18:22,681 adding 'dxpy/templating/templates/python/parallelized/test/test.py' 2025-06-05T20:18:22,682 adding 'dxpy/templating/templates/python/scatter-process-gather/dxapp.json' 2025-06-05T20:18:22,685 adding 'dxpy/templating/templates/python/scatter-process-gather/src/code.py' 2025-06-05T20:18:22,687 adding 'dxpy/templating/templates/python/scatter-process-gather/test/test.py' 2025-06-05T20:18:22,690 adding 'dxpy/utils/__init__.py' 2025-06-05T20:18:22,692 adding 'dxpy/utils/batch_utils.py' 2025-06-05T20:18:22,695 adding 'dxpy/utils/completer.py' 2025-06-05T20:18:22,697 adding 'dxpy/utils/config.py' 2025-06-05T20:18:22,704 adding 'dxpy/utils/describe.py' 2025-06-05T20:18:22,708 adding 'dxpy/utils/exec_utils.py' 2025-06-05T20:18:22,711 adding 'dxpy/utils/executable_unbuilder.py' 2025-06-05T20:18:22,712 adding 'dxpy/utils/file_handle.py' 2025-06-05T20:18:22,715 adding 'dxpy/utils/file_load_utils.py' 2025-06-05T20:18:22,716 adding 'dxpy/utils/genomic_utils.py' 2025-06-05T20:18:22,718 adding 'dxpy/utils/job_log_client.py' 2025-06-05T20:18:22,721 adding 'dxpy/utils/local_exec_utils.py' 2025-06-05T20:18:22,723 adding 'dxpy/utils/pathmatch.py' 2025-06-05T20:18:22,725 adding 'dxpy/utils/pretty_print.py' 2025-06-05T20:18:22,727 adding 'dxpy/utils/printing.py' 2025-06-05T20:18:22,734 adding 'dxpy/utils/resolver.py' 2025-06-05T20:18:22,736 adding 'dxpy/utils/spelling_corrector.py' 2025-06-05T20:18:22,738 adding 'dxpy/utils/version.py' 2025-06-05T20:18:22,741 adding 'dxpy-0.395.0.data/scripts/dx-clone-asset' 2025-06-05T20:18:22,744 adding 'dxpy-0.395.0.data/scripts/dx-docker' 2025-06-05T20:18:22,746 adding 'dxpy-0.395.0.data/scripts/dx-download-all-inputs' 2025-06-05T20:18:22,747 adding 'dxpy-0.395.0.data/scripts/dx-fetch-bundled-depends' 2025-06-05T20:18:22,749 adding 'dxpy-0.395.0.data/scripts/dx-generate-dxapp' 2025-06-05T20:18:22,751 adding 'dxpy-0.395.0.data/scripts/dx-jobutil-add-output' 2025-06-05T20:18:22,752 adding 'dxpy-0.395.0.data/scripts/dx-jobutil-dxlink' 2025-06-05T20:18:22,753 adding 'dxpy-0.395.0.data/scripts/dx-jobutil-get-identity-token' 2025-06-05T20:18:22,755 adding 'dxpy-0.395.0.data/scripts/dx-jobutil-new-job' 2025-06-05T20:18:22,756 adding 'dxpy-0.395.0.data/scripts/dx-jobutil-parse-link' 2025-06-05T20:18:22,757 adding 'dxpy-0.395.0.data/scripts/dx-jobutil-report-error' 2025-06-05T20:18:22,759 adding 'dxpy-0.395.0.data/scripts/dx-log-stream' 2025-06-05T20:18:22,760 adding 'dxpy-0.395.0.data/scripts/dx-mount-all-inputs' 2025-06-05T20:18:22,761 adding 'dxpy-0.395.0.data/scripts/dx-notebook-reconnect' 2025-06-05T20:18:22,763 adding 'dxpy-0.395.0.data/scripts/dx-print-bash-vars' 2025-06-05T20:18:22,765 adding 'dxpy-0.395.0.data/scripts/dx-upload-all-outputs' 2025-06-05T20:18:22,768 adding 'dxpy-0.395.0.dist-info/METADATA' 2025-06-05T20:18:22,769 adding 'dxpy-0.395.0.dist-info/WHEEL' 2025-06-05T20:18:22,770 adding 'dxpy-0.395.0.dist-info/entry_points.txt' 2025-06-05T20:18:22,771 adding 'dxpy-0.395.0.dist-info/top_level.txt' 2025-06-05T20:18:22,774 adding 'dxpy-0.395.0.dist-info/RECORD' 2025-06-05T20:18:22,783 removing build/bdist.linux-armv7l/wheel 2025-06-05T20:18:22,946 Building wheel for dxpy (setup.py): finished with status 'done' 2025-06-05T20:18:22,954 Created wheel for dxpy: filename=dxpy-0.395.0-py2.py3-none-any.whl size=520633 sha256=8e6f7ed4dc5e96d5e00e516db21227a9bd712ffbcd150b1637e63b8141af6233 2025-06-05T20:18:22,955 Stored in directory: /tmp/pip-ephem-wheel-cache-8ti0ghsl/wheels/e8/81/93/f591f1c92a2fcb7fb9d3ec8c3801fac31de7e36eb408fb1076 2025-06-05T20:18:22,971 Successfully built dxpy 2025-06-05T20:18:22,988 Removed build tracker: '/tmp/pip-build-tracker-tm2p4api'