2025-06-07T03:39:17,935 Created temporary directory: /tmp/pip-build-tracker-n2t29am0
2025-06-07T03:39:17,936 Initialized build tracking at /tmp/pip-build-tracker-n2t29am0
2025-06-07T03:39:17,937 Created build tracker: /tmp/pip-build-tracker-n2t29am0
2025-06-07T03:39:17,937 Entered build tracker: /tmp/pip-build-tracker-n2t29am0
2025-06-07T03:39:17,938 Created temporary directory: /tmp/pip-wheel-jvoiyqip
2025-06-07T03:39:17,942 Created temporary directory: /tmp/pip-ephem-wheel-cache-swad8qxx
2025-06-07T03:39:17,992 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-06-07T03:39:17,995 2 location(s) to search for versions of strucgap:
2025-06-07T03:39:17,995 * https://pypi.org/simple/strucgap/
2025-06-07T03:39:17,995 * https://www.piwheels.org/simple/strucgap/
2025-06-07T03:39:17,995 Fetching project page and analyzing links: https://pypi.org/simple/strucgap/
2025-06-07T03:39:17,996 Getting page https://pypi.org/simple/strucgap/
2025-06-07T03:39:17,998 Found index url https://pypi.org/simple/
2025-06-07T03:39:18,218 Fetched page https://pypi.org/simple/strucgap/ as application/vnd.pypi.simple.v1+json
2025-06-07T03:39:18,221   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/d4/cf/908ee965464dceab500051b070d301fc648f14f165918a250643f754312c/strucgap-1.0.1-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-07T03:39:18,222   Found link https://files.pythonhosted.org/packages/e4/ed/c84c67d5cb18aa5d6c871bc5abb254e198230535214a7cf8f003ecf813ae/strucgap-1.0.1.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.1
2025-06-07T03:39:18,223   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/e6/0a/417b6b5e0043e5a5e92598e60b289e11bbf3a1921db8a06967ac26c821ab/strucgap-1.0.2-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-07T03:39:18,223   Found link https://files.pythonhosted.org/packages/80/b5/c0a8aca19ac9b3b37852926dab5aef22813bfb7db17e022907b7513751cd/strucgap-1.0.2.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.2
2025-06-07T03:39:18,224   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/6c/8a/8046fc9d7585c40b76f94bcc0f51462b26b460ef72eaba283adc359b1414/strucgap-1.0.3-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-07T03:39:18,225   Found link https://files.pythonhosted.org/packages/36/64/97df6dbf736d30b1ed5a0f11b09513d266c5451783575b47fadd5ba720f7/strucgap-1.0.3.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.3
2025-06-07T03:39:18,226   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/4c/cf/29374aca5d9a6e4dcb92da71d7c737883fea9dc0c784add2f46b047bcdb3/strucgap-1.0.4-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-07T03:39:18,227   Found link https://files.pythonhosted.org/packages/f7/a4/54678a7f65da22ad9bf8c1fbc22ff415a1c4c59b190aa2cc0ab02bc71a27/strucgap-1.0.4.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.4
2025-06-07T03:39:18,227   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/3e/0a/acfe362babd9946aee23c5c9b973b22704fdd4625b21d3aefc3158469a8f/strucgap-1.0.5-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-07T03:39:18,228   Found link https://files.pythonhosted.org/packages/31/14/c9640736615f7b3cd7300f1146d0f6c3c707a24e604b663635e89fb72f74/strucgap-1.0.5.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.5
2025-06-07T03:39:18,229   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/19/2b/a229156141e4f96b442c92afa912d9dc7ff7ca93d4fd40498b412eb2e492/strucgap-1.0.6-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-07T03:39:18,229   Found link https://files.pythonhosted.org/packages/47/e1/49002ee8fee4ea83a29298aeadb5da1cad51e30702a716412b435796e909/strucgap-1.0.6.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.6
2025-06-07T03:39:18,230   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/f5/96/a6e1a5e8ddaa8319d34850b3a6ee7abc4cb4a45cab48147b26c76a355af2/strucgap-1.0.7-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-07T03:39:18,231   Found link https://files.pythonhosted.org/packages/61/54/ca1a7a265a6b1ab75b75bd1d707aa4d66a91f69dd4491dbcd23a5b1d96bc/strucgap-1.0.7.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.7
2025-06-07T03:39:18,231   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/a5/9d/28f80481e570ce67b245dc87afdefa13a5a3200a6f53baccfdd8d7683250/strucgap-1.0.8-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-07T03:39:18,232   Found link https://files.pythonhosted.org/packages/f3/20/5427f3d9632c77f35f2d3d0565ebdf4c63366100b5c96fa50ebdfcc6a8a2/strucgap-1.0.8.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.8
2025-06-07T03:39:18,233 Fetching project page and analyzing links: https://www.piwheels.org/simple/strucgap/
2025-06-07T03:39:18,233 Getting page https://www.piwheels.org/simple/strucgap/
2025-06-07T03:39:18,235 Found index url https://www.piwheels.org/simple/
2025-06-07T03:39:18,384 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/strucgap/
2025-06-07T03:39:19,035 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/strucgap/
2025-06-07T03:39:20,187 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/strucgap/
2025-06-07T03:39:22,402 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/strucgap/
2025-06-07T03:39:26,615 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/strucgap/
2025-06-07T03:39:26,832 Could not fetch URL https://www.piwheels.org/simple/strucgap/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/strucgap/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping
2025-06-07T03:39:26,834 Skipping link: not a file: https://www.piwheels.org/simple/strucgap/
2025-06-07T03:39:26,834 Skipping link: not a file: https://pypi.org/simple/strucgap/
2025-06-07T03:39:26,853 Given no hashes to check 1 links for project 'strucgap': discarding no candidates
2025-06-07T03:39:26,854 Collecting strucgap==1.0.1
2025-06-07T03:39:26,857   Created temporary directory: /tmp/pip-unpack-dhgtpuqo
2025-06-07T03:39:27,080   Downloading strucgap-1.0.1.tar.gz (110 kB)
2025-06-07T03:39:27,209   Added strucgap==1.0.1 from https://files.pythonhosted.org/packages/e4/ed/c84c67d5cb18aa5d6c871bc5abb254e198230535214a7cf8f003ecf813ae/strucgap-1.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-n2t29am0'
2025-06-07T03:39:27,211   Running setup.py (path:/tmp/pip-wheel-jvoiyqip/strucgap_f713deb325944c56833eccd81219db1d/setup.py) egg_info for package strucgap
2025-06-07T03:39:27,212   Created temporary directory: /tmp/pip-pip-egg-info-3oh1o2rr
2025-06-07T03:39:27,213   Preparing metadata (setup.py): started
2025-06-07T03:39:27,214   Running command python setup.py egg_info
2025-06-07T03:39:28,099   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-06-07T03:39:28,099   !!

2025-06-07T03:39:28,100           ********************************************************************************
2025-06-07T03:39:28,101           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-06-07T03:39:28,101           License :: OSI Approved :: MIT License

2025-06-07T03:39:28,102           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-06-07T03:39:28,103           ********************************************************************************

2025-06-07T03:39:28,104   !!
2025-06-07T03:39:28,104     self._finalize_license_expression()
2025-06-07T03:39:28,129   running egg_info
2025-06-07T03:39:28,155   creating /tmp/pip-pip-egg-info-3oh1o2rr/strucgap.egg-info
2025-06-07T03:39:28,156   writing /tmp/pip-pip-egg-info-3oh1o2rr/strucgap.egg-info/PKG-INFO
2025-06-07T03:39:28,160   writing dependency_links to /tmp/pip-pip-egg-info-3oh1o2rr/strucgap.egg-info/dependency_links.txt
2025-06-07T03:39:28,162   writing requirements to /tmp/pip-pip-egg-info-3oh1o2rr/strucgap.egg-info/requires.txt
2025-06-07T03:39:28,163   writing top-level names to /tmp/pip-pip-egg-info-3oh1o2rr/strucgap.egg-info/top_level.txt
2025-06-07T03:39:28,164   writing manifest file '/tmp/pip-pip-egg-info-3oh1o2rr/strucgap.egg-info/SOURCES.txt'
2025-06-07T03:39:28,250   reading manifest file '/tmp/pip-pip-egg-info-3oh1o2rr/strucgap.egg-info/SOURCES.txt'
2025-06-07T03:39:28,254   writing manifest file '/tmp/pip-pip-egg-info-3oh1o2rr/strucgap.egg-info/SOURCES.txt'
2025-06-07T03:39:28,358   Preparing metadata (setup.py): finished with status 'done'
2025-06-07T03:39:28,363   Source in /tmp/pip-wheel-jvoiyqip/strucgap_f713deb325944c56833eccd81219db1d has version 1.0.1, which satisfies requirement strucgap==1.0.1 from https://files.pythonhosted.org/packages/e4/ed/c84c67d5cb18aa5d6c871bc5abb254e198230535214a7cf8f003ecf813ae/strucgap-1.0.1.tar.gz
2025-06-07T03:39:28,364   Removed strucgap==1.0.1 from https://files.pythonhosted.org/packages/e4/ed/c84c67d5cb18aa5d6c871bc5abb254e198230535214a7cf8f003ecf813ae/strucgap-1.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-n2t29am0'
2025-06-07T03:39:28,373 Created temporary directory: /tmp/pip-unpack-muiuqcp4
2025-06-07T03:39:28,374 Created temporary directory: /tmp/pip-unpack-rfal3n43
2025-06-07T03:39:28,375 Building wheels for collected packages: strucgap
2025-06-07T03:39:28,379   Created temporary directory: /tmp/pip-wheel-d6ok5q4i
2025-06-07T03:39:28,380   DEPRECATION: Building 'strucgap' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'strucgap'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-06-07T03:39:28,381   Building wheel for strucgap (setup.py): started
2025-06-07T03:39:28,382   Destination directory: /tmp/pip-wheel-d6ok5q4i
2025-06-07T03:39:28,383   Running command python setup.py bdist_wheel
2025-06-07T03:39:29,199   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-06-07T03:39:29,199   !!

2025-06-07T03:39:29,200           ********************************************************************************
2025-06-07T03:39:29,201           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-06-07T03:39:29,202           License :: OSI Approved :: MIT License

2025-06-07T03:39:29,203           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-06-07T03:39:29,204           ********************************************************************************

2025-06-07T03:39:29,204   !!
2025-06-07T03:39:29,205     self._finalize_license_expression()
2025-06-07T03:39:29,205   running bdist_wheel
2025-06-07T03:39:29,339   running build
2025-06-07T03:39:29,339   running build_py
2025-06-07T03:39:29,368   creating build/lib/strucgap
2025-06-07T03:39:29,370   copying strucgap/datavisualization.py -> build/lib/strucgap
2025-06-07T03:39:29,378   copying strucgap/glycanstructure.py -> build/lib/strucgap
2025-06-07T03:39:29,383   copying strucgap/preprocess.py -> build/lib/strucgap
2025-06-07T03:39:29,386   copying strucgap/__init__.py -> build/lib/strucgap
2025-06-07T03:39:29,388   copying strucgap/glyconetwork.py -> build/lib/strucgap
2025-06-07T03:39:29,393   copying strucgap/functionannotation.py -> build/lib/strucgap
2025-06-07T03:39:29,398   copying strucgap/glycopeptidequant.py -> build/lib/strucgap
2025-06-07T03:39:29,402   copying strucgap/insighttracker.py -> build/lib/strucgap
2025-06-07T03:39:29,405   copying strucgap/glycosite.py -> build/lib/strucgap
2025-06-07T03:39:29,435   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-06-07T03:39:29,435   !!

2025-06-07T03:39:29,436           ********************************************************************************
2025-06-07T03:39:29,437           Please avoid running ``setup.py`` directly.
2025-06-07T03:39:29,438           Instead, use pypa/build, pypa/installer or other
2025-06-07T03:39:29,438           standards-based tools.

2025-06-07T03:39:29,439           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-06-07T03:39:29,440           or your builds will no longer be supported.

2025-06-07T03:39:29,441           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-06-07T03:39:29,442           ********************************************************************************

2025-06-07T03:39:29,443   !!
2025-06-07T03:39:29,444     self.initialize_options()
2025-06-07T03:39:29,462   installing to build/bdist.linux-armv7l/wheel
2025-06-07T03:39:29,463   running install
2025-06-07T03:39:29,486   running install_lib
2025-06-07T03:39:29,512   creating build/bdist.linux-armv7l/wheel
2025-06-07T03:39:29,514   creating build/bdist.linux-armv7l/wheel/strucgap
2025-06-07T03:39:29,515   copying build/lib/strucgap/datavisualization.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-07T03:39:29,522   copying build/lib/strucgap/glycanstructure.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-07T03:39:29,526   copying build/lib/strucgap/preprocess.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-07T03:39:29,530   copying build/lib/strucgap/__init__.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-07T03:39:29,531   copying build/lib/strucgap/glyconetwork.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-07T03:39:29,535   copying build/lib/strucgap/functionannotation.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-07T03:39:29,540   copying build/lib/strucgap/glycopeptidequant.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-07T03:39:29,545   copying build/lib/strucgap/insighttracker.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-07T03:39:29,548   copying build/lib/strucgap/glycosite.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-07T03:39:29,551   running install_egg_info
2025-06-07T03:39:29,584   running egg_info
2025-06-07T03:39:29,613   writing strucgap.egg-info/PKG-INFO
2025-06-07T03:39:29,616   writing dependency_links to strucgap.egg-info/dependency_links.txt
2025-06-07T03:39:29,618   writing requirements to strucgap.egg-info/requires.txt
2025-06-07T03:39:29,619   writing top-level names to strucgap.egg-info/top_level.txt
2025-06-07T03:39:29,648   reading manifest file 'strucgap.egg-info/SOURCES.txt'
2025-06-07T03:39:29,653   writing manifest file 'strucgap.egg-info/SOURCES.txt'
2025-06-07T03:39:29,655   Copying strucgap.egg-info to build/bdist.linux-armv7l/wheel/./strucgap-1.0.1-py3.11.egg-info
2025-06-07T03:39:29,664   running install_scripts
2025-06-07T03:39:29,673   creating build/bdist.linux-armv7l/wheel/strucgap-1.0.1.dist-info/WHEEL
2025-06-07T03:39:29,675   creating '/tmp/pip-wheel-d6ok5q4i/strucgap-1.0.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-06-07T03:39:29,678   adding 'strucgap/__init__.py'
2025-06-07T03:39:29,703   adding 'strucgap/datavisualization.py'
2025-06-07T03:39:29,714   adding 'strucgap/functionannotation.py'
2025-06-07T03:39:29,721   adding 'strucgap/glycanstructure.py'
2025-06-07T03:39:29,727   adding 'strucgap/glyconetwork.py'
2025-06-07T03:39:29,735   adding 'strucgap/glycopeptidequant.py'
2025-06-07T03:39:29,738   adding 'strucgap/glycosite.py'
2025-06-07T03:39:29,741   adding 'strucgap/insighttracker.py'
2025-06-07T03:39:29,745   adding 'strucgap/preprocess.py'
2025-06-07T03:39:29,747   adding 'strucgap-1.0.1.dist-info/METADATA'
2025-06-07T03:39:29,748   adding 'strucgap-1.0.1.dist-info/WHEEL'
2025-06-07T03:39:29,749   adding 'strucgap-1.0.1.dist-info/top_level.txt'
2025-06-07T03:39:29,750   adding 'strucgap-1.0.1.dist-info/RECORD'
2025-06-07T03:39:29,753   removing build/bdist.linux-armv7l/wheel
2025-06-07T03:39:29,863   Building wheel for strucgap (setup.py): finished with status 'done'
2025-06-07T03:39:29,866   Created wheel for strucgap: filename=strucgap-1.0.1-py3-none-any.whl size=117649 sha256=d66e2cf28b23dbff3f48dd4ad5cffb86f163c508b1381b82853347d327fa9c77
2025-06-07T03:39:29,867   Stored in directory: /tmp/pip-ephem-wheel-cache-swad8qxx/wheels/f7/2a/c9/6562306163b2640ab1403b6df38796f345d31b6a7e5d1c9f06
2025-06-07T03:39:29,878 Successfully built strucgap
2025-06-07T03:39:29,885 Removed build tracker: '/tmp/pip-build-tracker-n2t29am0'