2025-06-07T03:43:05,272 Created temporary directory: /tmp/pip-build-tracker-yaonb3ge
2025-06-07T03:43:05,273 Initialized build tracking at /tmp/pip-build-tracker-yaonb3ge
2025-06-07T03:43:05,274 Created build tracker: /tmp/pip-build-tracker-yaonb3ge
2025-06-07T03:43:05,274 Entered build tracker: /tmp/pip-build-tracker-yaonb3ge
2025-06-07T03:43:05,275 Created temporary directory: /tmp/pip-wheel-_jpzn471
2025-06-07T03:43:05,279 Created temporary directory: /tmp/pip-ephem-wheel-cache-k7mweu8w
2025-06-07T03:43:05,335 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-06-07T03:43:05,338 2 location(s) to search for versions of strucgap:
2025-06-07T03:43:05,338 * https://pypi.org/simple/strucgap/
2025-06-07T03:43:05,338 * https://www.piwheels.org/simple/strucgap/
2025-06-07T03:43:05,339 Fetching project page and analyzing links: https://pypi.org/simple/strucgap/
2025-06-07T03:43:05,339 Getting page https://pypi.org/simple/strucgap/
2025-06-07T03:43:05,341 Found index url https://pypi.org/simple/
2025-06-07T03:43:05,498 Fetched page https://pypi.org/simple/strucgap/ as application/vnd.pypi.simple.v1+json
2025-06-07T03:43:05,501   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/d4/cf/908ee965464dceab500051b070d301fc648f14f165918a250643f754312c/strucgap-1.0.1-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-07T03:43:05,502   Found link https://files.pythonhosted.org/packages/e4/ed/c84c67d5cb18aa5d6c871bc5abb254e198230535214a7cf8f003ecf813ae/strucgap-1.0.1.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.1
2025-06-07T03:43:05,503   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/e6/0a/417b6b5e0043e5a5e92598e60b289e11bbf3a1921db8a06967ac26c821ab/strucgap-1.0.2-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-07T03:43:05,504   Found link https://files.pythonhosted.org/packages/80/b5/c0a8aca19ac9b3b37852926dab5aef22813bfb7db17e022907b7513751cd/strucgap-1.0.2.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.2
2025-06-07T03:43:05,505   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/6c/8a/8046fc9d7585c40b76f94bcc0f51462b26b460ef72eaba283adc359b1414/strucgap-1.0.3-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-07T03:43:05,505   Found link https://files.pythonhosted.org/packages/36/64/97df6dbf736d30b1ed5a0f11b09513d266c5451783575b47fadd5ba720f7/strucgap-1.0.3.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.3
2025-06-07T03:43:05,506   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/4c/cf/29374aca5d9a6e4dcb92da71d7c737883fea9dc0c784add2f46b047bcdb3/strucgap-1.0.4-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-07T03:43:05,507   Found link https://files.pythonhosted.org/packages/f7/a4/54678a7f65da22ad9bf8c1fbc22ff415a1c4c59b190aa2cc0ab02bc71a27/strucgap-1.0.4.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.4
2025-06-07T03:43:05,508   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/3e/0a/acfe362babd9946aee23c5c9b973b22704fdd4625b21d3aefc3158469a8f/strucgap-1.0.5-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-07T03:43:05,508   Found link https://files.pythonhosted.org/packages/31/14/c9640736615f7b3cd7300f1146d0f6c3c707a24e604b663635e89fb72f74/strucgap-1.0.5.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.5
2025-06-07T03:43:05,509   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/19/2b/a229156141e4f96b442c92afa912d9dc7ff7ca93d4fd40498b412eb2e492/strucgap-1.0.6-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-07T03:43:05,510   Found link https://files.pythonhosted.org/packages/47/e1/49002ee8fee4ea83a29298aeadb5da1cad51e30702a716412b435796e909/strucgap-1.0.6.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.6
2025-06-07T03:43:05,510   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/f5/96/a6e1a5e8ddaa8319d34850b3a6ee7abc4cb4a45cab48147b26c76a355af2/strucgap-1.0.7-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-07T03:43:05,511   Found link https://files.pythonhosted.org/packages/61/54/ca1a7a265a6b1ab75b75bd1d707aa4d66a91f69dd4491dbcd23a5b1d96bc/strucgap-1.0.7.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.7
2025-06-07T03:43:05,512   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/a5/9d/28f80481e570ce67b245dc87afdefa13a5a3200a6f53baccfdd8d7683250/strucgap-1.0.8-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-07T03:43:05,512   Found link https://files.pythonhosted.org/packages/f3/20/5427f3d9632c77f35f2d3d0565ebdf4c63366100b5c96fa50ebdfcc6a8a2/strucgap-1.0.8.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.8
2025-06-07T03:43:05,513 Fetching project page and analyzing links: https://www.piwheels.org/simple/strucgap/
2025-06-07T03:43:05,514 Getting page https://www.piwheels.org/simple/strucgap/
2025-06-07T03:43:05,515 Found index url https://www.piwheels.org/simple/
2025-06-07T03:43:05,677 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/strucgap/
2025-06-07T03:43:06,349 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/strucgap/
2025-06-07T03:43:07,517 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/strucgap/
2025-06-07T03:43:09,703 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/strucgap/
2025-06-07T03:43:13,877 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/strucgap/
2025-06-07T03:43:14,054 Could not fetch URL https://www.piwheels.org/simple/strucgap/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/strucgap/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping
2025-06-07T03:43:14,056 Skipping link: not a file: https://www.piwheels.org/simple/strucgap/
2025-06-07T03:43:14,057 Skipping link: not a file: https://pypi.org/simple/strucgap/
2025-06-07T03:43:14,080 Given no hashes to check 1 links for project 'strucgap': discarding no candidates
2025-06-07T03:43:14,082 Collecting strucgap==1.0.2
2025-06-07T03:43:14,085   Created temporary directory: /tmp/pip-unpack-bqraoogz
2025-06-07T03:43:14,309   Downloading strucgap-1.0.2.tar.gz (110 kB)
2025-06-07T03:43:14,442   Added strucgap==1.0.2 from https://files.pythonhosted.org/packages/80/b5/c0a8aca19ac9b3b37852926dab5aef22813bfb7db17e022907b7513751cd/strucgap-1.0.2.tar.gz to build tracker '/tmp/pip-build-tracker-yaonb3ge'
2025-06-07T03:43:14,444   Running setup.py (path:/tmp/pip-wheel-_jpzn471/strucgap_214b872cc39e47f783b45c6bdfbe9f8a/setup.py) egg_info for package strucgap
2025-06-07T03:43:14,445   Created temporary directory: /tmp/pip-pip-egg-info-9npyogtm
2025-06-07T03:43:14,446   Preparing metadata (setup.py): started
2025-06-07T03:43:14,447   Running command python setup.py egg_info
2025-06-07T03:43:15,368   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-06-07T03:43:15,368   !!

2025-06-07T03:43:15,369           ********************************************************************************
2025-06-07T03:43:15,369           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-06-07T03:43:15,370           License :: OSI Approved :: MIT License

2025-06-07T03:43:15,371           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-06-07T03:43:15,372           ********************************************************************************

2025-06-07T03:43:15,373   !!
2025-06-07T03:43:15,373     self._finalize_license_expression()
2025-06-07T03:43:15,398   running egg_info
2025-06-07T03:43:15,426   creating /tmp/pip-pip-egg-info-9npyogtm/strucgap.egg-info
2025-06-07T03:43:15,427   writing /tmp/pip-pip-egg-info-9npyogtm/strucgap.egg-info/PKG-INFO
2025-06-07T03:43:15,430   writing dependency_links to /tmp/pip-pip-egg-info-9npyogtm/strucgap.egg-info/dependency_links.txt
2025-06-07T03:43:15,433   writing requirements to /tmp/pip-pip-egg-info-9npyogtm/strucgap.egg-info/requires.txt
2025-06-07T03:43:15,434   writing top-level names to /tmp/pip-pip-egg-info-9npyogtm/strucgap.egg-info/top_level.txt
2025-06-07T03:43:15,435   writing manifest file '/tmp/pip-pip-egg-info-9npyogtm/strucgap.egg-info/SOURCES.txt'
2025-06-07T03:43:15,524   reading manifest file '/tmp/pip-pip-egg-info-9npyogtm/strucgap.egg-info/SOURCES.txt'
2025-06-07T03:43:15,528   writing manifest file '/tmp/pip-pip-egg-info-9npyogtm/strucgap.egg-info/SOURCES.txt'
2025-06-07T03:43:15,634   Preparing metadata (setup.py): finished with status 'done'
2025-06-07T03:43:15,638   Source in /tmp/pip-wheel-_jpzn471/strucgap_214b872cc39e47f783b45c6bdfbe9f8a has version 1.0.2, which satisfies requirement strucgap==1.0.2 from https://files.pythonhosted.org/packages/80/b5/c0a8aca19ac9b3b37852926dab5aef22813bfb7db17e022907b7513751cd/strucgap-1.0.2.tar.gz
2025-06-07T03:43:15,639   Removed strucgap==1.0.2 from https://files.pythonhosted.org/packages/80/b5/c0a8aca19ac9b3b37852926dab5aef22813bfb7db17e022907b7513751cd/strucgap-1.0.2.tar.gz from build tracker '/tmp/pip-build-tracker-yaonb3ge'
2025-06-07T03:43:15,649 Created temporary directory: /tmp/pip-unpack-8k5ydcpu
2025-06-07T03:43:15,650 Created temporary directory: /tmp/pip-unpack-q4yu68w7
2025-06-07T03:43:15,650 Building wheels for collected packages: strucgap
2025-06-07T03:43:15,655   Created temporary directory: /tmp/pip-wheel-8tf7tv_t
2025-06-07T03:43:15,656   DEPRECATION: Building 'strucgap' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'strucgap'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-06-07T03:43:15,658   Building wheel for strucgap (setup.py): started
2025-06-07T03:43:15,659   Destination directory: /tmp/pip-wheel-8tf7tv_t
2025-06-07T03:43:15,660   Running command python setup.py bdist_wheel
2025-06-07T03:43:16,487   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-06-07T03:43:16,487   !!

2025-06-07T03:43:16,488           ********************************************************************************
2025-06-07T03:43:16,489           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-06-07T03:43:16,490           License :: OSI Approved :: MIT License

2025-06-07T03:43:16,491           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-06-07T03:43:16,492           ********************************************************************************

2025-06-07T03:43:16,493   !!
2025-06-07T03:43:16,493     self._finalize_license_expression()
2025-06-07T03:43:16,494   running bdist_wheel
2025-06-07T03:43:16,627   running build
2025-06-07T03:43:16,627   running build_py
2025-06-07T03:43:16,658   creating build/lib/strucgap
2025-06-07T03:43:16,660   copying strucgap/glycanstructure.py -> build/lib/strucgap
2025-06-07T03:43:16,664   copying strucgap/datavisualization.py -> build/lib/strucgap
2025-06-07T03:43:16,677   copying strucgap/glyconetwork.py -> build/lib/strucgap
2025-06-07T03:43:16,682   copying strucgap/glycopeptidequant.py -> build/lib/strucgap
2025-06-07T03:43:16,688   copying strucgap/__init__.py -> build/lib/strucgap
2025-06-07T03:43:16,690   copying strucgap/glycosite.py -> build/lib/strucgap
2025-06-07T03:43:16,693   copying strucgap/insighttracker.py -> build/lib/strucgap
2025-06-07T03:43:16,695   copying strucgap/functionannotation.py -> build/lib/strucgap
2025-06-07T03:43:16,701   copying strucgap/preprocess.py -> build/lib/strucgap
2025-06-07T03:43:16,734   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-06-07T03:43:16,734   !!

2025-06-07T03:43:16,735           ********************************************************************************
2025-06-07T03:43:16,736           Please avoid running ``setup.py`` directly.
2025-06-07T03:43:16,737           Instead, use pypa/build, pypa/installer or other
2025-06-07T03:43:16,737           standards-based tools.

2025-06-07T03:43:16,739           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-06-07T03:43:16,739           or your builds will no longer be supported.

2025-06-07T03:43:16,740           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-06-07T03:43:16,741           ********************************************************************************

2025-06-07T03:43:16,742   !!
2025-06-07T03:43:16,743     self.initialize_options()
2025-06-07T03:43:16,763   installing to build/bdist.linux-armv7l/wheel
2025-06-07T03:43:16,764   running install
2025-06-07T03:43:16,789   running install_lib
2025-06-07T03:43:16,815   creating build/bdist.linux-armv7l/wheel
2025-06-07T03:43:16,817   creating build/bdist.linux-armv7l/wheel/strucgap
2025-06-07T03:43:16,819   copying build/lib/strucgap/glycanstructure.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-07T03:43:16,823   copying build/lib/strucgap/datavisualization.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-07T03:43:16,831   copying build/lib/strucgap/glyconetwork.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-07T03:43:16,836   copying build/lib/strucgap/glycopeptidequant.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-07T03:43:16,842   copying build/lib/strucgap/__init__.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-07T03:43:16,844   copying build/lib/strucgap/glycosite.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-07T03:43:16,846   copying build/lib/strucgap/insighttracker.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-07T03:43:16,849   copying build/lib/strucgap/functionannotation.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-07T03:43:16,853   copying build/lib/strucgap/preprocess.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-07T03:43:16,856   running install_egg_info
2025-06-07T03:43:16,893   running egg_info
2025-06-07T03:43:16,922   writing strucgap.egg-info/PKG-INFO
2025-06-07T03:43:16,925   writing dependency_links to strucgap.egg-info/dependency_links.txt
2025-06-07T03:43:16,928   writing requirements to strucgap.egg-info/requires.txt
2025-06-07T03:43:16,929   writing top-level names to strucgap.egg-info/top_level.txt
2025-06-07T03:43:16,960   reading manifest file 'strucgap.egg-info/SOURCES.txt'
2025-06-07T03:43:16,965   writing manifest file 'strucgap.egg-info/SOURCES.txt'
2025-06-07T03:43:16,967   Copying strucgap.egg-info to build/bdist.linux-armv7l/wheel/./strucgap-1.0.2-py3.11.egg-info
2025-06-07T03:43:16,976   running install_scripts
2025-06-07T03:43:16,985   creating build/bdist.linux-armv7l/wheel/strucgap-1.0.2.dist-info/WHEEL
2025-06-07T03:43:16,988   creating '/tmp/pip-wheel-8tf7tv_t/strucgap-1.0.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-06-07T03:43:16,991   adding 'strucgap/__init__.py'
2025-06-07T03:43:17,019   adding 'strucgap/datavisualization.py'
2025-06-07T03:43:17,029   adding 'strucgap/functionannotation.py'
2025-06-07T03:43:17,036   adding 'strucgap/glycanstructure.py'
2025-06-07T03:43:17,043   adding 'strucgap/glyconetwork.py'
2025-06-07T03:43:17,050   adding 'strucgap/glycopeptidequant.py'
2025-06-07T03:43:17,053   adding 'strucgap/glycosite.py'
2025-06-07T03:43:17,056   adding 'strucgap/insighttracker.py'
2025-06-07T03:43:17,059   adding 'strucgap/preprocess.py'
2025-06-07T03:43:17,061   adding 'strucgap-1.0.2.dist-info/METADATA'
2025-06-07T03:43:17,062   adding 'strucgap-1.0.2.dist-info/WHEEL'
2025-06-07T03:43:17,063   adding 'strucgap-1.0.2.dist-info/top_level.txt'
2025-06-07T03:43:17,064   adding 'strucgap-1.0.2.dist-info/RECORD'
2025-06-07T03:43:17,067   removing build/bdist.linux-armv7l/wheel
2025-06-07T03:43:17,178   Building wheel for strucgap (setup.py): finished with status 'done'
2025-06-07T03:43:17,182   Created wheel for strucgap: filename=strucgap-1.0.2-py3-none-any.whl size=117807 sha256=b44495f332c79761e21ffc84f3d85eaeceba3e142bf43c42937e35de10d3f4a4
2025-06-07T03:43:17,183   Stored in directory: /tmp/pip-ephem-wheel-cache-k7mweu8w/wheels/57/ff/c0/49998f9044526ac2499a63eb7fa13253b787e60d46b412cf06
2025-06-07T03:43:17,193 Successfully built strucgap
2025-06-07T03:43:17,203 Removed build tracker: '/tmp/pip-build-tracker-yaonb3ge'