2025-06-07T07:34:08,024 Created temporary directory: /tmp/pip-build-tracker-sp76gvi5 2025-06-07T07:34:08,025 Initialized build tracking at /tmp/pip-build-tracker-sp76gvi5 2025-06-07T07:34:08,025 Created build tracker: /tmp/pip-build-tracker-sp76gvi5 2025-06-07T07:34:08,026 Entered build tracker: /tmp/pip-build-tracker-sp76gvi5 2025-06-07T07:34:08,026 Created temporary directory: /tmp/pip-wheel-g3_e3hg3 2025-06-07T07:34:08,030 Created temporary directory: /tmp/pip-ephem-wheel-cache-w0uzcpls 2025-06-07T07:34:08,085 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-06-07T07:34:08,087 2 location(s) to search for versions of exprmat: 2025-06-07T07:34:08,087 * https://pypi.org/simple/exprmat/ 2025-06-07T07:34:08,087 * https://www.piwheels.org/simple/exprmat/ 2025-06-07T07:34:08,088 Fetching project page and analyzing links: https://pypi.org/simple/exprmat/ 2025-06-07T07:34:08,089 Getting page https://pypi.org/simple/exprmat/ 2025-06-07T07:34:08,090 Found index url https://pypi.org/simple/ 2025-06-07T07:34:08,260 Fetched page https://pypi.org/simple/exprmat/ as application/vnd.pypi.simple.v1+json 2025-06-07T07:34:08,295 Found link https://files.pythonhosted.org/packages/8b/79/30356bc459af9759eed2497e026fb925564a64efe3c3e5f4e6b7e21e69e6/exprmat-0.1.3.tar.gz (from https://pypi.org/simple/exprmat/), version: 0.1.3 2025-06-07T07:34:08,296 Found link https://files.pythonhosted.org/packages/8c/65/8debe5009aded68fc1f32ff56530597549abc17542ea60ecc73471531710/exprmat-0.1.4.tar.gz (from https://pypi.org/simple/exprmat/), version: 0.1.4 2025-06-07T07:34:08,297 Found link https://files.pythonhosted.org/packages/13/3b/5bd0fa300de2b56be98e38ee8d6a99fb3296fcfad7d22855465f683d0623/exprmat-0.1.5.tar.gz (from https://pypi.org/simple/exprmat/), version: 0.1.5 2025-06-07T07:34:08,297 Found link https://files.pythonhosted.org/packages/b8/ea/f550690252b92e8d2adbd47321e440c1e85f7ae08c1201f3e9a75f9d07ce/exprmat-0.1.6.tar.gz (from https://pypi.org/simple/exprmat/), version: 0.1.6 2025-06-07T07:34:08,298 Found link https://files.pythonhosted.org/packages/ae/f0/e1119c8764155e289c4b34f0b7e67545e4e6734d199754a98c17ca1b84b8/exprmat-0.1.7.tar.gz (from https://pypi.org/simple/exprmat/), version: 0.1.7 2025-06-07T07:34:08,299 Found link https://files.pythonhosted.org/packages/96/1c/d7efe1418baff4eb3dfe998853c49fff43ddd91f0b334f26ba0a3c073d61/exprmat-0.1.8.tar.gz (from https://pypi.org/simple/exprmat/), version: 0.1.8 2025-06-07T07:34:08,300 Found link https://files.pythonhosted.org/packages/ec/22/cac8ddd7bb4caa53dfa7d1e9d59315459e8ebae90313216ce76d850c487f/exprmat-0.1.9.tar.gz (from https://pypi.org/simple/exprmat/), version: 0.1.9 2025-06-07T07:34:08,301 Found link https://files.pythonhosted.org/packages/6a/dc/3a5a91c41d9a327455e70ceb7518ee4498e49a70a364404bb262c7f84fb7/exprmat-0.1.10.tar.gz (from https://pypi.org/simple/exprmat/), version: 0.1.10 2025-06-07T07:34:08,301 Found link https://files.pythonhosted.org/packages/b3/aa/39b0183dffb550e3d6997173faedb034baad93de3a98242dbe0de42e6ca4/exprmat-0.1.12.tar.gz (from https://pypi.org/simple/exprmat/), version: 0.1.12 2025-06-07T07:34:08,302 Found link https://files.pythonhosted.org/packages/ac/2b/b7cce6b59b4d18a21bca981c217f957e81ba0360de965369282a97b4930b/exprmat-0.1.13.tar.gz (from https://pypi.org/simple/exprmat/), version: 0.1.13 2025-06-07T07:34:08,303 Found link https://files.pythonhosted.org/packages/49/df/07be7ca3a96b19e651a238f7ba0955a706eefe8dfc45c874a8876cc71d5f/exprmat-0.1.15.tar.gz (from https://pypi.org/simple/exprmat/), version: 0.1.15 2025-06-07T07:34:08,303 Found link https://files.pythonhosted.org/packages/b4/0e/76c2e124a227cafdf7645e5a0e29bcf96891b07db59a44faf37b0ab7fd65/exprmat-0.1.16.tar.gz (from https://pypi.org/simple/exprmat/), version: 0.1.16 2025-06-07T07:34:08,304 Found link 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https://files.pythonhosted.org/packages/48/ea/aa18c5cd93b462ff12e9ecae89f5ce35eb96df2649cc4ebf0df08c448847/exprmat-0.1.39-cp312-cp312-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/exprmat/) (requires-python:<3.13,>=3.9) 2025-06-07T07:34:08,447 Skipping link: No binaries permitted for exprmat: https://files.pythonhosted.org/packages/95/df/fef6035b59b9c77f0c2d921d6ff4132bb0f6643bff6e4cebd2b16aded008/exprmat-0.1.39-cp312-cp312-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/exprmat/) (requires-python:<3.13,>=3.9) 2025-06-07T07:34:08,447 Skipping link: No binaries permitted for exprmat: https://files.pythonhosted.org/packages/f7/af/421dbc757a4682889b08b42c82ca0febf05f7ccdbdaf3e65627995ceae8c/exprmat-0.1.39-cp39-cp39-manylinux_2_28_aarch64.whl (from https://pypi.org/simple/exprmat/) (requires-python:<3.13,>=3.9) 2025-06-07T07:34:08,448 Skipping link: No binaries permitted for exprmat: https://files.pythonhosted.org/packages/52/73/189a438d870b135ab83e632bc0ebcb4b1a0b820a0783157f5acc9c0bfd3b/exprmat-0.1.39-cp39-cp39-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/exprmat/) (requires-python:<3.13,>=3.9) 2025-06-07T07:34:08,449 Skipping link: No binaries permitted for exprmat: https://files.pythonhosted.org/packages/cf/e8/6d240c035b7b8c122f84e414eeacdc5f0f192a182bc8fbdcd66378b9870a/exprmat-0.1.39-cp39-cp39-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/exprmat/) (requires-python:<3.13,>=3.9) 2025-06-07T07:34:08,449 Skipping link: No binaries permitted for exprmat: https://files.pythonhosted.org/packages/39/50/04f4db227a112f878af9a8b32b8d7b478cf9b4ca41036a7a0ca9fd18490a/exprmat-0.1.39-cp39-cp39-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/exprmat/) (requires-python:<3.13,>=3.9) 2025-06-07T07:34:08,450 Found link https://files.pythonhosted.org/packages/8b/83/816782887aca00f4a4db45e57d540c6c6128bfbe9e4bb47ea46e2980bd36/exprmat-0.1.39.tar.gz (from https://pypi.org/simple/exprmat/) (requires-python:<3.13,>=3.9), version: 0.1.39 2025-06-07T07:34:08,451 Fetching project page and analyzing links: https://www.piwheels.org/simple/exprmat/ 2025-06-07T07:34:08,452 Getting page https://www.piwheels.org/simple/exprmat/ 2025-06-07T07:34:08,453 Found index url https://www.piwheels.org/simple/ 2025-06-07T07:34:08,619 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/exprmat/ 2025-06-07T07:34:09,324 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/exprmat/ 2025-06-07T07:34:10,493 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/exprmat/ 2025-06-07T07:34:12,666 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/exprmat/ 2025-06-07T07:34:16,835 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/exprmat/ 2025-06-07T07:34:17,010 Could not fetch URL https://www.piwheels.org/simple/exprmat/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/exprmat/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping 2025-06-07T07:34:17,012 Skipping link: not a file: https://www.piwheels.org/simple/exprmat/ 2025-06-07T07:34:17,013 Skipping link: not a file: https://pypi.org/simple/exprmat/ 2025-06-07T07:34:17,041 Given no hashes to check 1 links for project 'exprmat': discarding no candidates 2025-06-07T07:34:17,049 Collecting exprmat==0.1.5 2025-06-07T07:34:17,058 Created temporary directory: /tmp/pip-unpack-j4cf2bx7 2025-06-07T07:34:17,607 Downloading exprmat-0.1.5.tar.gz (5.7 MB) 2025-06-07T07:34:18,851 Added exprmat==0.1.5 from https://files.pythonhosted.org/packages/13/3b/5bd0fa300de2b56be98e38ee8d6a99fb3296fcfad7d22855465f683d0623/exprmat-0.1.5.tar.gz to build tracker '/tmp/pip-build-tracker-sp76gvi5' 2025-06-07T07:34:18,854 Running setup.py (path:/tmp/pip-wheel-g3_e3hg3/exprmat_e744ebb759dc499f8bd4f7cc63392b51/setup.py) egg_info for package exprmat 2025-06-07T07:34:18,855 Created temporary directory: /tmp/pip-pip-egg-info-tzvny74_ 2025-06-07T07:34:18,855 Preparing metadata (setup.py): started 2025-06-07T07:34:18,856 Running command python setup.py egg_info 2025-06-07T07:34:19,768 running egg_info 2025-06-07T07:34:19,796 creating /tmp/pip-pip-egg-info-tzvny74_/exprmat.egg-info 2025-06-07T07:34:19,797 writing /tmp/pip-pip-egg-info-tzvny74_/exprmat.egg-info/PKG-INFO 2025-06-07T07:34:19,801 writing dependency_links to /tmp/pip-pip-egg-info-tzvny74_/exprmat.egg-info/dependency_links.txt 2025-06-07T07:34:19,805 writing requirements to /tmp/pip-pip-egg-info-tzvny74_/exprmat.egg-info/requires.txt 2025-06-07T07:34:19,806 writing top-level names to /tmp/pip-pip-egg-info-tzvny74_/exprmat.egg-info/top_level.txt 2025-06-07T07:34:19,807 writing manifest file '/tmp/pip-pip-egg-info-tzvny74_/exprmat.egg-info/SOURCES.txt' 2025-06-07T07:34:20,144 reading manifest file '/tmp/pip-pip-egg-info-tzvny74_/exprmat.egg-info/SOURCES.txt' 2025-06-07T07:34:20,149 writing manifest file '/tmp/pip-pip-egg-info-tzvny74_/exprmat.egg-info/SOURCES.txt' 2025-06-07T07:34:20,254 Preparing metadata (setup.py): finished with status 'done' 2025-06-07T07:34:20,259 Source in /tmp/pip-wheel-g3_e3hg3/exprmat_e744ebb759dc499f8bd4f7cc63392b51 has version 0.1.5, which satisfies requirement exprmat==0.1.5 from https://files.pythonhosted.org/packages/13/3b/5bd0fa300de2b56be98e38ee8d6a99fb3296fcfad7d22855465f683d0623/exprmat-0.1.5.tar.gz 2025-06-07T07:34:20,260 Removed exprmat==0.1.5 from https://files.pythonhosted.org/packages/13/3b/5bd0fa300de2b56be98e38ee8d6a99fb3296fcfad7d22855465f683d0623/exprmat-0.1.5.tar.gz from build tracker '/tmp/pip-build-tracker-sp76gvi5' 2025-06-07T07:34:20,267 Created temporary directory: /tmp/pip-unpack-b7c1li49 2025-06-07T07:34:20,268 Created temporary directory: /tmp/pip-unpack-vb2_0nm_ 2025-06-07T07:34:20,269 Building wheels for collected packages: exprmat 2025-06-07T07:34:20,273 Created temporary directory: /tmp/pip-wheel-y3pqf1uv 2025-06-07T07:34:20,274 DEPRECATION: Building 'exprmat' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'exprmat'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-06-07T07:34:20,276 Building wheel for exprmat (setup.py): started 2025-06-07T07:34:20,277 Destination directory: /tmp/pip-wheel-y3pqf1uv 2025-06-07T07:34:20,278 Running command python setup.py bdist_wheel 2025-06-07T07:34:21,124 running bdist_wheel 2025-06-07T07:34:21,259 running build 2025-06-07T07:34:21,260 running build_py 2025-06-07T07:34:21,290 creating build/lib/exprmat 2025-06-07T07:34:21,293 copying exprmat/__init__.py -> build/lib/exprmat 2025-06-07T07:34:21,295 copying exprmat/utils.py -> build/lib/exprmat 2025-06-07T07:34:21,297 copying exprmat/configuration.py -> build/lib/exprmat 2025-06-07T07:34:21,299 copying exprmat/ansi.py -> build/lib/exprmat 2025-06-07T07:34:21,302 creating build/lib/exprmat/descriptive 2025-06-07T07:34:21,303 copying exprmat/descriptive/__init__.py -> build/lib/exprmat/descriptive 2025-06-07T07:34:21,305 copying exprmat/descriptive/de.py -> build/lib/exprmat/descriptive 2025-06-07T07:34:21,307 copying exprmat/descriptive/kde.py -> build/lib/exprmat/descriptive 2025-06-07T07:34:21,310 creating build/lib/exprmat/reader 2025-06-07T07:34:21,311 copying exprmat/reader/__init__.py -> build/lib/exprmat/reader 2025-06-07T07:34:21,313 copying exprmat/reader/experiment.py -> build/lib/exprmat/reader 2025-06-07T07:34:21,316 copying exprmat/reader/matcher.py -> build/lib/exprmat/reader 2025-06-07T07:34:21,319 copying exprmat/reader/metadata.py -> build/lib/exprmat/reader 2025-06-07T07:34:21,322 creating build/lib/exprmat/clustering 2025-06-07T07:34:21,323 copying exprmat/clustering/__init__.py -> build/lib/exprmat/clustering 2025-06-07T07:34:21,325 copying exprmat/clustering/utils.py -> build/lib/exprmat/clustering 2025-06-07T07:34:21,328 copying exprmat/clustering/spectral.py -> build/lib/exprmat/clustering 2025-06-07T07:34:21,329 copying exprmat/clustering/leiden.py -> build/lib/exprmat/clustering 2025-06-07T07:34:21,332 creating build/lib/exprmat/preprocessing 2025-06-07T07:34:21,333 copying exprmat/preprocessing/__init__.py -> build/lib/exprmat/preprocessing 2025-06-07T07:34:21,335 copying exprmat/preprocessing/filter.py -> build/lib/exprmat/preprocessing 2025-06-07T07:34:21,338 copying exprmat/preprocessing/sparse.py -> build/lib/exprmat/preprocessing 2025-06-07T07:34:21,340 copying exprmat/preprocessing/linear.py -> build/lib/exprmat/preprocessing 2025-06-07T07:34:21,342 copying exprmat/preprocessing/uniform.py -> build/lib/exprmat/preprocessing 2025-06-07T07:34:21,344 copying exprmat/preprocessing/plot.py -> build/lib/exprmat/preprocessing 2025-06-07T07:34:21,346 copying exprmat/preprocessing/normal.py -> build/lib/exprmat/preprocessing 2025-06-07T07:34:21,348 copying exprmat/preprocessing/integrate.py -> build/lib/exprmat/preprocessing 2025-06-07T07:34:21,351 copying exprmat/preprocessing/qc.py -> build/lib/exprmat/preprocessing 2025-06-07T07:34:21,354 creating build/lib/exprmat/reduction 2025-06-07T07:34:21,355 copying exprmat/reduction/__init__.py -> build/lib/exprmat/reduction 2025-06-07T07:34:21,358 copying exprmat/reduction/pca.py -> build/lib/exprmat/reduction 2025-06-07T07:34:21,360 copying exprmat/reduction/nn.py -> build/lib/exprmat/reduction 2025-06-07T07:34:21,363 copying exprmat/reduction/mde.py -> build/lib/exprmat/reduction 2025-06-07T07:34:21,365 copying exprmat/reduction/plot.py -> build/lib/exprmat/reduction 2025-06-07T07:34:21,368 copying exprmat/reduction/umap.py -> build/lib/exprmat/reduction 2025-06-07T07:34:21,370 copying exprmat/reduction/forceatlas.py -> build/lib/exprmat/reduction 2025-06-07T07:34:21,372 copying exprmat/reduction/pumap.py -> build/lib/exprmat/reduction 2025-06-07T07:34:21,375 copying exprmat/reduction/tsne.py -> build/lib/exprmat/reduction 2025-06-07T07:34:21,378 creating build/lib/exprmat/plotting 2025-06-07T07:34:21,379 copying exprmat/plotting/__init__.py -> build/lib/exprmat/plotting 2025-06-07T07:34:21,381 copying exprmat/plotting/expression.py -> build/lib/exprmat/plotting 2025-06-07T07:34:21,383 copying exprmat/plotting/de.py -> build/lib/exprmat/plotting 2025-06-07T07:34:21,386 copying exprmat/plotting/cnv.py -> build/lib/exprmat/plotting 2025-06-07T07:34:21,388 copying exprmat/plotting/palettes.py -> build/lib/exprmat/plotting 2025-06-07T07:34:21,394 creating build/lib/exprmat/data 2025-06-07T07:34:21,395 copying exprmat/data/__init__.py -> build/lib/exprmat/data 2025-06-07T07:34:21,397 copying exprmat/data/finders.py -> build/lib/exprmat/data 2025-06-07T07:34:21,400 copying exprmat/data/gff.py -> build/lib/exprmat/data 2025-06-07T07:34:21,402 copying exprmat/data/delim.py -> build/lib/exprmat/data 2025-06-07T07:34:21,404 copying exprmat/data/ranges.py -> build/lib/exprmat/data 2025-06-07T07:34:21,407 copying exprmat/data/private.py -> build/lib/exprmat/data 2025-06-07T07:34:21,409 creating build/lib/exprmat/cnv 2025-06-07T07:34:21,411 copying exprmat/cnv/__init__.py -> build/lib/exprmat/cnv 2025-06-07T07:34:21,413 copying exprmat/cnv/cnvscore.py -> build/lib/exprmat/cnv 2025-06-07T07:34:21,415 copying exprmat/cnv/infercnv.py -> build/lib/exprmat/cnv 2025-06-07T07:34:21,418 creating build/lib/exprmat/preprocessing/doublets 2025-06-07T07:34:21,419 copying exprmat/preprocessing/doublets/composite.py -> build/lib/exprmat/preprocessing/doublets 2025-06-07T07:34:21,421 copying exprmat/preprocessing/doublets/__init__.py -> build/lib/exprmat/preprocessing/doublets 2025-06-07T07:34:21,423 copying exprmat/preprocessing/doublets/scrublet.py -> build/lib/exprmat/preprocessing/doublets 2025-06-07T07:34:21,426 creating build/lib/exprmat/preprocessing/sctransform 2025-06-07T07:34:21,427 copying exprmat/preprocessing/sctransform/__init__.py -> build/lib/exprmat/preprocessing/sctransform 2025-06-07T07:34:21,429 copying exprmat/preprocessing/sctransform/residual.py -> build/lib/exprmat/preprocessing/sctransform 2025-06-07T07:34:21,431 copying exprmat/preprocessing/sctransform/estimate.py -> build/lib/exprmat/preprocessing/sctransform 2025-06-07T07:34:21,433 copying exprmat/preprocessing/sctransform/transform.py -> build/lib/exprmat/preprocessing/sctransform 2025-06-07T07:34:21,436 copying exprmat/preprocessing/sctransform/ksmooth.py -> build/lib/exprmat/preprocessing/sctransform 2025-06-07T07:34:21,446 creating build/lib/exprmat/data/mmu 2025-06-07T07:34:21,447 copying exprmat/data/mmu/genome.tsv.gz -> build/lib/exprmat/data/mmu 2025-06-07T07:34:21,500 creating build/lib/exprmat/data/hsa 2025-06-07T07:34:21,501 copying exprmat/data/hsa/genome.tsv.gz -> build/lib/exprmat/data/hsa 2025-06-07T07:34:21,583 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-06-07T07:34:21,583 !! 2025-06-07T07:34:21,585 ******************************************************************************** 2025-06-07T07:34:21,585 Please avoid running ``setup.py`` directly. 2025-06-07T07:34:21,586 Instead, use pypa/build, pypa/installer or other 2025-06-07T07:34:21,587 standards-based tools. 2025-06-07T07:34:21,588 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-06-07T07:34:21,588 or your builds will no longer be supported. 2025-06-07T07:34:21,590 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-06-07T07:34:21,590 ******************************************************************************** 2025-06-07T07:34:21,592 !! 2025-06-07T07:34:21,592 self.initialize_options() 2025-06-07T07:34:21,614 installing to build/bdist.linux-armv7l/wheel 2025-06-07T07:34:21,614 running install 2025-06-07T07:34:21,639 running install_lib 2025-06-07T07:34:21,666 creating build/bdist.linux-armv7l/wheel 2025-06-07T07:34:21,668 creating build/bdist.linux-armv7l/wheel/exprmat 2025-06-07T07:34:21,670 creating build/bdist.linux-armv7l/wheel/exprmat/descriptive 2025-06-07T07:34:21,671 copying build/lib/exprmat/descriptive/__init__.py -> build/bdist.linux-armv7l/wheel/./exprmat/descriptive 2025-06-07T07:34:21,673 copying build/lib/exprmat/descriptive/de.py -> build/bdist.linux-armv7l/wheel/./exprmat/descriptive 2025-06-07T07:34:21,675 copying build/lib/exprmat/descriptive/kde.py -> build/bdist.linux-armv7l/wheel/./exprmat/descriptive 2025-06-07T07:34:21,677 copying build/lib/exprmat/__init__.py -> build/bdist.linux-armv7l/wheel/./exprmat 2025-06-07T07:34:21,679 creating build/bdist.linux-armv7l/wheel/exprmat/reader 2025-06-07T07:34:21,681 copying build/lib/exprmat/reader/__init__.py -> build/bdist.linux-armv7l/wheel/./exprmat/reader 2025-06-07T07:34:21,683 copying build/lib/exprmat/reader/experiment.py -> build/bdist.linux-armv7l/wheel/./exprmat/reader 2025-06-07T07:34:21,686 copying build/lib/exprmat/reader/matcher.py -> build/bdist.linux-armv7l/wheel/./exprmat/reader 2025-06-07T07:34:21,689 copying build/lib/exprmat/reader/metadata.py -> build/bdist.linux-armv7l/wheel/./exprmat/reader 2025-06-07T07:34:21,692 creating build/bdist.linux-armv7l/wheel/exprmat/clustering 2025-06-07T07:34:21,693 copying build/lib/exprmat/clustering/__init__.py -> build/bdist.linux-armv7l/wheel/./exprmat/clustering 2025-06-07T07:34:21,695 copying build/lib/exprmat/clustering/utils.py -> build/bdist.linux-armv7l/wheel/./exprmat/clustering 2025-06-07T07:34:21,697 copying build/lib/exprmat/clustering/spectral.py -> build/bdist.linux-armv7l/wheel/./exprmat/clustering 2025-06-07T07:34:21,699 copying build/lib/exprmat/clustering/leiden.py -> build/bdist.linux-armv7l/wheel/./exprmat/clustering 2025-06-07T07:34:21,701 copying build/lib/exprmat/utils.py -> build/bdist.linux-armv7l/wheel/./exprmat 2025-06-07T07:34:21,704 creating build/bdist.linux-armv7l/wheel/exprmat/preprocessing 2025-06-07T07:34:21,705 copying build/lib/exprmat/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./exprmat/preprocessing 2025-06-07T07:34:21,708 creating build/bdist.linux-armv7l/wheel/exprmat/preprocessing/doublets 2025-06-07T07:34:21,710 copying build/lib/exprmat/preprocessing/doublets/composite.py -> build/bdist.linux-armv7l/wheel/./exprmat/preprocessing/doublets 2025-06-07T07:34:21,712 copying build/lib/exprmat/preprocessing/doublets/__init__.py -> build/bdist.linux-armv7l/wheel/./exprmat/preprocessing/doublets 2025-06-07T07:34:21,714 copying build/lib/exprmat/preprocessing/doublets/scrublet.py -> build/bdist.linux-armv7l/wheel/./exprmat/preprocessing/doublets 2025-06-07T07:34:21,717 copying build/lib/exprmat/preprocessing/filter.py -> build/bdist.linux-armv7l/wheel/./exprmat/preprocessing 2025-06-07T07:34:21,720 copying build/lib/exprmat/preprocessing/sparse.py -> build/bdist.linux-armv7l/wheel/./exprmat/preprocessing 2025-06-07T07:34:21,722 copying build/lib/exprmat/preprocessing/linear.py -> build/bdist.linux-armv7l/wheel/./exprmat/preprocessing 2025-06-07T07:34:21,724 copying build/lib/exprmat/preprocessing/uniform.py -> build/bdist.linux-armv7l/wheel/./exprmat/preprocessing 2025-06-07T07:34:21,726 copying build/lib/exprmat/preprocessing/plot.py -> build/bdist.linux-armv7l/wheel/./exprmat/preprocessing 2025-06-07T07:34:21,728 creating build/bdist.linux-armv7l/wheel/exprmat/preprocessing/sctransform 2025-06-07T07:34:21,729 copying build/lib/exprmat/preprocessing/sctransform/__init__.py -> build/bdist.linux-armv7l/wheel/./exprmat/preprocessing/sctransform 2025-06-07T07:34:21,731 copying build/lib/exprmat/preprocessing/sctransform/residual.py -> build/bdist.linux-armv7l/wheel/./exprmat/preprocessing/sctransform 2025-06-07T07:34:21,733 copying build/lib/exprmat/preprocessing/sctransform/estimate.py -> build/bdist.linux-armv7l/wheel/./exprmat/preprocessing/sctransform 2025-06-07T07:34:21,735 copying build/lib/exprmat/preprocessing/sctransform/transform.py -> build/bdist.linux-armv7l/wheel/./exprmat/preprocessing/sctransform 2025-06-07T07:34:21,738 copying build/lib/exprmat/preprocessing/sctransform/ksmooth.py -> build/bdist.linux-armv7l/wheel/./exprmat/preprocessing/sctransform 2025-06-07T07:34:21,740 copying build/lib/exprmat/preprocessing/normal.py -> build/bdist.linux-armv7l/wheel/./exprmat/preprocessing 2025-06-07T07:34:21,742 copying build/lib/exprmat/preprocessing/integrate.py -> build/bdist.linux-armv7l/wheel/./exprmat/preprocessing 2025-06-07T07:34:21,745 copying build/lib/exprmat/preprocessing/qc.py -> build/bdist.linux-armv7l/wheel/./exprmat/preprocessing 2025-06-07T07:34:21,748 creating build/bdist.linux-armv7l/wheel/exprmat/reduction 2025-06-07T07:34:21,749 copying build/lib/exprmat/reduction/__init__.py -> build/bdist.linux-armv7l/wheel/./exprmat/reduction 2025-06-07T07:34:21,752 copying build/lib/exprmat/reduction/pca.py -> build/bdist.linux-armv7l/wheel/./exprmat/reduction 2025-06-07T07:34:21,754 copying build/lib/exprmat/reduction/nn.py -> build/bdist.linux-armv7l/wheel/./exprmat/reduction 2025-06-07T07:34:21,757 copying build/lib/exprmat/reduction/mde.py -> build/bdist.linux-armv7l/wheel/./exprmat/reduction 2025-06-07T07:34:21,759 copying build/lib/exprmat/reduction/plot.py -> build/bdist.linux-armv7l/wheel/./exprmat/reduction 2025-06-07T07:34:21,762 copying build/lib/exprmat/reduction/umap.py -> build/bdist.linux-armv7l/wheel/./exprmat/reduction 2025-06-07T07:34:21,764 copying build/lib/exprmat/reduction/forceatlas.py -> build/bdist.linux-armv7l/wheel/./exprmat/reduction 2025-06-07T07:34:21,766 copying build/lib/exprmat/reduction/pumap.py -> build/bdist.linux-armv7l/wheel/./exprmat/reduction 2025-06-07T07:34:21,769 copying build/lib/exprmat/reduction/tsne.py -> build/bdist.linux-armv7l/wheel/./exprmat/reduction 2025-06-07T07:34:21,771 creating build/bdist.linux-armv7l/wheel/exprmat/plotting 2025-06-07T07:34:21,772 copying build/lib/exprmat/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./exprmat/plotting 2025-06-07T07:34:21,774 copying build/lib/exprmat/plotting/expression.py -> build/bdist.linux-armv7l/wheel/./exprmat/plotting 2025-06-07T07:34:21,776 copying build/lib/exprmat/plotting/de.py -> build/bdist.linux-armv7l/wheel/./exprmat/plotting 2025-06-07T07:34:21,779 copying build/lib/exprmat/plotting/cnv.py -> build/bdist.linux-armv7l/wheel/./exprmat/plotting 2025-06-07T07:34:21,781 copying build/lib/exprmat/plotting/palettes.py -> build/bdist.linux-armv7l/wheel/./exprmat/plotting 2025-06-07T07:34:21,786 copying build/lib/exprmat/configuration.py -> build/bdist.linux-armv7l/wheel/./exprmat 2025-06-07T07:34:21,788 copying build/lib/exprmat/ansi.py -> build/bdist.linux-armv7l/wheel/./exprmat 2025-06-07T07:34:21,791 creating build/bdist.linux-armv7l/wheel/exprmat/data 2025-06-07T07:34:21,792 creating build/bdist.linux-armv7l/wheel/exprmat/data/mmu 2025-06-07T07:34:21,793 copying build/lib/exprmat/data/mmu/genome.tsv.gz -> build/bdist.linux-armv7l/wheel/./exprmat/data/mmu 2025-06-07T07:34:21,846 copying build/lib/exprmat/data/__init__.py -> build/bdist.linux-armv7l/wheel/./exprmat/data 2025-06-07T07:34:21,848 creating build/bdist.linux-armv7l/wheel/exprmat/data/hsa 2025-06-07T07:34:21,849 copying build/lib/exprmat/data/hsa/genome.tsv.gz -> build/bdist.linux-armv7l/wheel/./exprmat/data/hsa 2025-06-07T07:34:21,892 copying build/lib/exprmat/data/finders.py -> build/bdist.linux-armv7l/wheel/./exprmat/data 2025-06-07T07:34:21,894 copying build/lib/exprmat/data/gff.py -> build/bdist.linux-armv7l/wheel/./exprmat/data 2025-06-07T07:34:21,896 copying build/lib/exprmat/data/delim.py -> build/bdist.linux-armv7l/wheel/./exprmat/data 2025-06-07T07:34:21,898 copying build/lib/exprmat/data/ranges.py -> build/bdist.linux-armv7l/wheel/./exprmat/data 2025-06-07T07:34:21,900 copying build/lib/exprmat/data/private.py -> build/bdist.linux-armv7l/wheel/./exprmat/data 2025-06-07T07:34:21,902 creating build/bdist.linux-armv7l/wheel/exprmat/cnv 2025-06-07T07:34:21,903 copying build/lib/exprmat/cnv/__init__.py -> build/bdist.linux-armv7l/wheel/./exprmat/cnv 2025-06-07T07:34:21,905 copying build/lib/exprmat/cnv/cnvscore.py -> build/bdist.linux-armv7l/wheel/./exprmat/cnv 2025-06-07T07:34:21,907 copying build/lib/exprmat/cnv/infercnv.py -> build/bdist.linux-armv7l/wheel/./exprmat/cnv 2025-06-07T07:34:21,909 running install_egg_info 2025-06-07T07:34:21,951 running egg_info 2025-06-07T07:34:21,979 writing exprmat.egg-info/PKG-INFO 2025-06-07T07:34:21,982 writing dependency_links to exprmat.egg-info/dependency_links.txt 2025-06-07T07:34:21,984 writing requirements to exprmat.egg-info/requires.txt 2025-06-07T07:34:21,985 writing top-level names to exprmat.egg-info/top_level.txt 2025-06-07T07:34:22,027 reading manifest file 'exprmat.egg-info/SOURCES.txt' 2025-06-07T07:34:22,038 writing manifest file 'exprmat.egg-info/SOURCES.txt' 2025-06-07T07:34:22,039 Copying exprmat.egg-info to build/bdist.linux-armv7l/wheel/./exprmat-0.1.5-py3.11.egg-info 2025-06-07T07:34:22,053 running install_scripts 2025-06-07T07:34:22,069 creating build/bdist.linux-armv7l/wheel/exprmat-0.1.5.dist-info/WHEEL 2025-06-07T07:34:22,072 creating '/tmp/pip-wheel-y3pqf1uv/exprmat-0.1.5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-06-07T07:34:22,075 adding 'exprmat/__init__.py' 2025-06-07T07:34:22,076 adding 'exprmat/ansi.py' 2025-06-07T07:34:22,078 adding 'exprmat/configuration.py' 2025-06-07T07:34:22,080 adding 'exprmat/utils.py' 2025-06-07T07:34:22,082 adding 'exprmat/clustering/__init__.py' 2025-06-07T07:34:22,083 adding 'exprmat/clustering/leiden.py' 2025-06-07T07:34:22,085 adding 'exprmat/clustering/spectral.py' 2025-06-07T07:34:22,086 adding 'exprmat/clustering/utils.py' 2025-06-07T07:34:22,088 adding 'exprmat/cnv/__init__.py' 2025-06-07T07:34:22,090 adding 'exprmat/cnv/cnvscore.py' 2025-06-07T07:34:22,093 adding 'exprmat/cnv/infercnv.py' 2025-06-07T07:34:22,095 adding 'exprmat/data/__init__.py' 2025-06-07T07:34:22,096 adding 'exprmat/data/delim.py' 2025-06-07T07:34:22,098 adding 'exprmat/data/finders.py' 2025-06-07T07:34:22,099 adding 'exprmat/data/gff.py' 2025-06-07T07:34:22,101 adding 'exprmat/data/private.py' 2025-06-07T07:34:22,102 adding 'exprmat/data/ranges.py' 2025-06-07T07:34:22,397 adding 'exprmat/data/hsa/genome.tsv.gz' 2025-06-07T07:34:22,751 adding 'exprmat/data/mmu/genome.tsv.gz' 2025-06-07T07:34:22,770 adding 'exprmat/descriptive/__init__.py' 2025-06-07T07:34:22,772 adding 'exprmat/descriptive/de.py' 2025-06-07T07:34:22,773 adding 'exprmat/descriptive/kde.py' 2025-06-07T07:34:22,775 adding 'exprmat/plotting/__init__.py' 2025-06-07T07:34:22,776 adding 'exprmat/plotting/cnv.py' 2025-06-07T07:34:22,778 adding 'exprmat/plotting/de.py' 2025-06-07T07:34:22,779 adding 'exprmat/plotting/expression.py' 2025-06-07T07:34:22,794 adding 'exprmat/plotting/palettes.py' 2025-06-07T07:34:22,796 adding 'exprmat/preprocessing/__init__.py' 2025-06-07T07:34:22,799 adding 'exprmat/preprocessing/filter.py' 2025-06-07T07:34:22,802 adding 'exprmat/preprocessing/integrate.py' 2025-06-07T07:34:22,803 adding 'exprmat/preprocessing/linear.py' 2025-06-07T07:34:22,804 adding 'exprmat/preprocessing/normal.py' 2025-06-07T07:34:22,805 adding 'exprmat/preprocessing/plot.py' 2025-06-07T07:34:22,807 adding 'exprmat/preprocessing/qc.py' 2025-06-07T07:34:22,809 adding 'exprmat/preprocessing/sparse.py' 2025-06-07T07:34:22,810 adding 'exprmat/preprocessing/uniform.py' 2025-06-07T07:34:22,811 adding 'exprmat/preprocessing/doublets/__init__.py' 2025-06-07T07:34:22,813 adding 'exprmat/preprocessing/doublets/composite.py' 2025-06-07T07:34:22,816 adding 'exprmat/preprocessing/doublets/scrublet.py' 2025-06-07T07:34:22,818 adding 'exprmat/preprocessing/sctransform/__init__.py' 2025-06-07T07:34:22,819 adding 'exprmat/preprocessing/sctransform/estimate.py' 2025-06-07T07:34:22,821 adding 'exprmat/preprocessing/sctransform/ksmooth.py' 2025-06-07T07:34:22,822 adding 'exprmat/preprocessing/sctransform/residual.py' 2025-06-07T07:34:22,824 adding 'exprmat/preprocessing/sctransform/transform.py' 2025-06-07T07:34:22,826 adding 'exprmat/reader/__init__.py' 2025-06-07T07:34:22,831 adding 'exprmat/reader/experiment.py' 2025-06-07T07:34:22,834 adding 'exprmat/reader/matcher.py' 2025-06-07T07:34:22,836 adding 'exprmat/reader/metadata.py' 2025-06-07T07:34:22,838 adding 'exprmat/reduction/__init__.py' 2025-06-07T07:34:22,839 adding 'exprmat/reduction/forceatlas.py' 2025-06-07T07:34:22,841 adding 'exprmat/reduction/mde.py' 2025-06-07T07:34:22,843 adding 'exprmat/reduction/nn.py' 2025-06-07T07:34:22,845 adding 'exprmat/reduction/pca.py' 2025-06-07T07:34:22,847 adding 'exprmat/reduction/plot.py' 2025-06-07T07:34:22,850 adding 'exprmat/reduction/pumap.py' 2025-06-07T07:34:22,851 adding 'exprmat/reduction/tsne.py' 2025-06-07T07:34:22,852 adding 'exprmat/reduction/umap.py' 2025-06-07T07:34:22,855 adding 'exprmat-0.1.5.dist-info/.ipynb_checkpoints/requires-checkpoint.txt' 2025-06-07T07:34:22,856 adding 'exprmat-0.1.5.dist-info/METADATA' 2025-06-07T07:34:22,857 adding 'exprmat-0.1.5.dist-info/WHEEL' 2025-06-07T07:34:22,858 adding 'exprmat-0.1.5.dist-info/top_level.txt' 2025-06-07T07:34:22,860 adding 'exprmat-0.1.5.dist-info/RECORD' 2025-06-07T07:34:22,929 removing build/bdist.linux-armv7l/wheel 2025-06-07T07:34:23,060 Building wheel for exprmat (setup.py): finished with status 'done' 2025-06-07T07:34:23,125 Created wheel for exprmat: filename=exprmat-0.1.5-py3-none-any.whl size=5716858 sha256=ba2833ff0a5915d943282ee7bd5ed1f52b4bc6faf698a2042baf1916765ff3ee 2025-06-07T07:34:23,126 Stored in directory: /tmp/pip-ephem-wheel-cache-w0uzcpls/wheels/19/78/30/5bbec701748c44999e85c6349cfc03579f3dfdf1cc48a2ec55 2025-06-07T07:34:23,140 Successfully built exprmat 2025-06-07T07:34:23,290 Removed build tracker: '/tmp/pip-build-tracker-sp76gvi5'