2025-06-07T05:15:49,166 Created temporary directory: /tmp/pip-build-tracker-__sxbxi4 2025-06-07T05:15:49,167 Initialized build tracking at /tmp/pip-build-tracker-__sxbxi4 2025-06-07T05:15:49,168 Created build tracker: /tmp/pip-build-tracker-__sxbxi4 2025-06-07T05:15:49,168 Entered build tracker: /tmp/pip-build-tracker-__sxbxi4 2025-06-07T05:15:49,169 Created temporary directory: /tmp/pip-wheel-jb60ndx9 2025-06-07T05:15:49,173 Created temporary directory: /tmp/pip-ephem-wheel-cache-beffrayq 2025-06-07T05:15:49,223 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-06-07T05:15:49,225 2 location(s) to search for versions of rcsb-workflow: 2025-06-07T05:15:49,225 * https://pypi.org/simple/rcsb-workflow/ 2025-06-07T05:15:49,225 * https://www.piwheels.org/simple/rcsb-workflow/ 2025-06-07T05:15:49,226 Fetching project page and analyzing links: https://pypi.org/simple/rcsb-workflow/ 2025-06-07T05:15:49,227 Getting page https://pypi.org/simple/rcsb-workflow/ 2025-06-07T05:15:49,229 Found index url https://pypi.org/simple/ 2025-06-07T05:15:49,528 Fetched page https://pypi.org/simple/rcsb-workflow/ as application/vnd.pypi.simple.v1+json 2025-06-07T05:15:49,535 Skipping link: No binaries permitted for rcsb-workflow: https://files.pythonhosted.org/packages/78/d0/23a8be8725a48eddd981f46bd8687593b205a5ed6abf17fb9334a294586e/rcsb.workflow-0.10-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-workflow/) 2025-06-07T05:15:49,535 Found link https://files.pythonhosted.org/packages/cb/7d/aa1db48a899f79509fad6f390290d0f694147b18b17fa6e72c19941339b1/rcsb.workflow-0.10.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.10 2025-06-07T05:15:49,536 Skipping link: No binaries permitted for rcsb-workflow: https://files.pythonhosted.org/packages/75/b4/d5f90585e059bcaa41921139c1cddc229672c48dfadcf54fc051592d7cb4/rcsb.workflow-0.12-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-workflow/) 2025-06-07T05:15:49,536 Found link https://files.pythonhosted.org/packages/5e/a1/8b0645289b2fd41a36c059dc0394a913e713acbf9ca72645f72d85e44f51/rcsb.workflow-0.12.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.12 2025-06-07T05:15:49,537 Skipping link: No binaries permitted for rcsb-workflow: https://files.pythonhosted.org/packages/fd/31/e5a6269e92556d5a488d1a849661b150065107a2634466c3c4ecc5ea6911/rcsb.workflow-0.13-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-workflow/) 2025-06-07T05:15:49,538 Found link https://files.pythonhosted.org/packages/ef/34/1490a3d7c1675c3be838c9795bbb4441bad3d7c2cc2d404c0597c24d99a7/rcsb.workflow-0.13.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.13 2025-06-07T05:15:49,538 Skipping link: No binaries permitted for rcsb-workflow: https://files.pythonhosted.org/packages/5a/7c/08087b77aa0ba0210b46ba55eeaa64f8b312763d2d110cafe929b987822a/rcsb.workflow-0.14-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-workflow/) 2025-06-07T05:15:49,539 Found link https://files.pythonhosted.org/packages/7e/5d/886edcf1fa3d92668615e4c84eeefa13c0562b8c57eee8b9445c2389dc57/rcsb.workflow-0.14.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.14 2025-06-07T05:15:49,540 Skipping link: No binaries permitted for rcsb-workflow: https://files.pythonhosted.org/packages/7b/49/bafc398f998f86f9a0133cc39c3df3c063ae32ee3d7fdf966ce773265a75/rcsb.workflow-0.15-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-workflow/) 2025-06-07T05:15:49,540 Found link https://files.pythonhosted.org/packages/63/aa/7faa15131f6fe3338b48cd47d3eeda07a0940c1ecbf4a054055334036794/rcsb.workflow-0.15.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.15 2025-06-07T05:15:49,541 Skipping link: No binaries permitted for rcsb-workflow: https://files.pythonhosted.org/packages/9c/89/2fe54d22c10106e969e38d8e110ac3de2a4819d0c6dd5d6ca86c6b9d6e6b/rcsb.workflow-0.16-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-workflow/) 2025-06-07T05:15:49,542 Found link https://files.pythonhosted.org/packages/db/a0/0001e1c66b7baac6d5ce53e0e4947ee90a062e9c14e4a174a588fb28c752/rcsb.workflow-0.16.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.16 2025-06-07T05:15:49,542 Skipping link: No binaries permitted for rcsb-workflow: https://files.pythonhosted.org/packages/13/41/360fbe2e9d98738569bb1669788e88fe2496ac2aa96c348b507d78ba5302/rcsb.workflow-0.17-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-workflow/) 2025-06-07T05:15:49,543 Found link https://files.pythonhosted.org/packages/f7/84/117d8d973206bad4f7f09427a0948cda7a52c81b46fc8c5c136d318ababe/rcsb.workflow-0.17.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.17 2025-06-07T05:15:49,544 Skipping link: No binaries permitted for rcsb-workflow: https://files.pythonhosted.org/packages/9f/2d/22fab9fdfc355a038ea5469206dba54d72350058ee260f628810d9d562de/rcsb.workflow-0.18-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-workflow/) 2025-06-07T05:15:49,544 Found link https://files.pythonhosted.org/packages/9f/de/e28f9b191c36c65c1c047f13222db60c9a22e4a564827a6b62bc46310aa4/rcsb.workflow-0.18.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.18 2025-06-07T05:15:49,545 Skipping link: No binaries permitted for rcsb-workflow: https://files.pythonhosted.org/packages/e9/f5/63a371d2bad0c8e7dcc5e9c6a9ef328495cb55611c224aab98997d3cccea/rcsb.workflow-0.19-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-workflow/) 2025-06-07T05:15:49,545 Found link https://files.pythonhosted.org/packages/96/e7/15b34e1266afd513f55ab9e38206b67a4f3b505385827211ce8244dceec3/rcsb.workflow-0.19.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.19 2025-06-07T05:15:49,546 Found link https://files.pythonhosted.org/packages/72/d7/0cc0e87ef7bb02f1d913c3322c1b0ad919d4c96432da9328c79922d63e41/rcsb.workflow-0.24.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.24 2025-06-07T05:15:49,547 Found link https://files.pythonhosted.org/packages/e9/04/2a67edfea6414ac39d2921cb2cb7c8ebcb7b800fdf66c7e785b8f812b830/rcsb.workflow-0.25.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.25 2025-06-07T05:15:49,547 Found link https://files.pythonhosted.org/packages/8f/f0/5b6f0fc64d5bc178f6597fa6d91bc5ad28b3dae3d7a750c7df050491bbe6/rcsb.workflow-0.26.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.26 2025-06-07T05:15:49,548 Skipping link: No binaries permitted for rcsb-workflow: https://files.pythonhosted.org/packages/e3/35/7106e9d7b08a6e341b13c2a02fac24a9f27d00fe5e6dcd4f2f8bdac75874/rcsb.workflow-0.27-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-workflow/) 2025-06-07T05:15:49,549 Found link https://files.pythonhosted.org/packages/aa/6d/ec6c45876c6f64ab576050f94cdbcecc7b50c5aa1579866ef3128386af1a/rcsb.workflow-0.27.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.27 2025-06-07T05:15:49,549 Found link https://files.pythonhosted.org/packages/aa/f8/1d07a82cc9c9da539f84a2d929183bf5766ce1327b9900b3ed91f56086e1/rcsb.workflow-0.28.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.28 2025-06-07T05:15:49,550 Found link https://files.pythonhosted.org/packages/36/d1/10c24a304b299747a2c758deb94af3e3d48a5a6f1a063bfac855fecad364/rcsb.workflow-0.29.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.29 2025-06-07T05:15:49,551 Skipping link: No binaries permitted for rcsb-workflow: https://files.pythonhosted.org/packages/8d/41/7c57f896c290efd93fc06f7d319d9ce07978470ab67f27d495502b38ec3c/rcsb.workflow-0.30-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-workflow/) 2025-06-07T05:15:49,551 Found link https://files.pythonhosted.org/packages/2b/be/9bf4d5113ef7cf0bc5676030bfa1cc866d18de3d0c19b35ea3a5b6827cfc/rcsb.workflow-0.30.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.30 2025-06-07T05:15:49,552 Skipping link: No binaries permitted for rcsb-workflow: https://files.pythonhosted.org/packages/49/09/13a43a51091be0e1a1a3e5511641aa8ac8859b7ea015b83bf658ea3ded1f/rcsb.workflow-0.31-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-workflow/) 2025-06-07T05:15:49,553 Found link https://files.pythonhosted.org/packages/bb/b3/6d3bbea706b3092da6fd71f287626913459e391d5351942c94b5f8f50da7/rcsb.workflow-0.31.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.31 2025-06-07T05:15:49,553 Found link https://files.pythonhosted.org/packages/fa/f0/2c9a3b00f52449824589626f4af66a8ff6392dbad2224aaaf5d4609030dd/rcsb.workflow-0.32.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.32 2025-06-07T05:15:49,554 Found link https://files.pythonhosted.org/packages/22/36/148bce85b9617781eca089db3245f6c27626265000990ff2ec4bfd46b125/rcsb.workflow-0.33.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.33 2025-06-07T05:15:49,555 Found link https://files.pythonhosted.org/packages/3e/25/cd2964043223eb759af7822046efb07a6bfd7076629d070034f92c2530f9/rcsb.workflow-0.34.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.34 2025-06-07T05:15:49,555 Found link https://files.pythonhosted.org/packages/31/b6/d56e884444570ba6b27f9bc990ea107760f7dbb50466ffefb77f21dd33ca/rcsb.workflow-0.35.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.35 2025-06-07T05:15:49,556 Found link https://files.pythonhosted.org/packages/52/92/1b314438799ed8bd6300d0be7dd03d2e16ed792abce55bc05a23f36608b1/rcsb.workflow-0.36.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.36 2025-06-07T05:15:49,556 Found link https://files.pythonhosted.org/packages/02/74/ca633488c03152fff2454f2304e9687626680f2856e1bc4802b19f536668/rcsb.workflow-0.37.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.37 2025-06-07T05:15:49,557 Found link https://files.pythonhosted.org/packages/fa/97/2b988fac338477a8a2b7b18703a7bcde60776b9764990276a41c17d40945/rcsb.workflow-0.38.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.38 2025-06-07T05:15:49,557 Found link https://files.pythonhosted.org/packages/19/79/c471f5d3efd5df300de1a34a66e12315b5d46dc72e30f2da9f6033209824/rcsb.workflow-0.39.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.39 2025-06-07T05:15:49,558 Found link https://files.pythonhosted.org/packages/b8/fb/710f1f8d97bb4444d315608b0dc5cffe16ec5b8144e7640389c9fe88f470/rcsb.workflow-0.40.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.40 2025-06-07T05:15:49,559 Found link https://files.pythonhosted.org/packages/26/39/030a8fe7429ad7beb26495df5efb8e46a003c6adc7c839c4646b142c4901/rcsb.workflow-0.41.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.41 2025-06-07T05:15:49,559 Found link https://files.pythonhosted.org/packages/b9/c3/3a12ae847a2c9b25e63731a021abc469c899fdefbc79d0efcd4b31b993d5/rcsb.workflow-0.42.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.42 2025-06-07T05:15:49,560 Found link https://files.pythonhosted.org/packages/38/43/fd5706cf2ed00c42c1f1d3078ac3c1b931b82ffbca7d41cdca296fd45df4/rcsb_workflow-0.43.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.43 2025-06-07T05:15:49,561 Found link https://files.pythonhosted.org/packages/7e/92/704d1de8467ed03ca9ad48752e590b583988d9498ca281b0e5efcb47fb6c/rcsb_workflow-0.44.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.44 2025-06-07T05:15:49,562 Found link https://files.pythonhosted.org/packages/6e/1c/3cccb3cd1e24e1a806347e1512a5170fc156414a3a70757372a3779d8f53/rcsb_workflow-0.45.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.45 2025-06-07T05:15:49,562 Found link https://files.pythonhosted.org/packages/f7/82/07272db3b851695019c8e4ee561326410caf6a625cd743d4017cddb4bbfe/rcsb_workflow-0.46.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.46 2025-06-07T05:15:49,563 Found link https://files.pythonhosted.org/packages/67/ba/977800fb227edf8fdcccb81d6fc2f34233cf26055202c1e91ba18742af19/rcsb_workflow-0.47.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.47 2025-06-07T05:15:49,563 Found link https://files.pythonhosted.org/packages/82/a8/8ee22802b00ee2c7cba6f4e725ad465001f6cc558a35e6d410ce81aef581/rcsb_workflow-0.48.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.48 2025-06-07T05:15:49,564 Found link https://files.pythonhosted.org/packages/6d/1f/633b0272c0b6417aa5f8be73903b866b1deb616b6f4d7564a3c614c0a84b/rcsb_workflow-0.49.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.49 2025-06-07T05:15:49,565 Found link https://files.pythonhosted.org/packages/80/bd/836b64ad2452a6c96b5ae31fac22079fa7081e27a7ac370747aef9dc448e/rcsb_workflow-0.50.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.50 2025-06-07T05:15:49,565 Found link https://files.pythonhosted.org/packages/24/4b/54aebde52046d97a766bf8e53d41be6a54c939fbbecf19f5091cfb410106/rcsb_workflow-0.51.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.51 2025-06-07T05:15:49,566 Found link https://files.pythonhosted.org/packages/8d/3c/11c205c6f583b87f0f82d9f449ca88e0f15fc26fb4fa9b86363ee481eac7/rcsb_workflow-0.52.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.52 2025-06-07T05:15:49,567 Found link https://files.pythonhosted.org/packages/aa/3f/1a26bdff8ab2aef5839fcccab0f3ce5e27e46660764dd8a1276cbbf3e111/rcsb_workflow-0.53.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.53 2025-06-07T05:15:49,567 Found link https://files.pythonhosted.org/packages/f5/9b/c27f5e9b2a3183d5b87731d8cb368669721ad60def6b261f2410e67ae75a/rcsb_workflow-0.54.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.54 2025-06-07T05:15:49,568 Found link https://files.pythonhosted.org/packages/3d/5a/bb1d98659d40d9ed9bd8b9947e8d94489333bcf501bff134e03cc83a4782/rcsb_workflow-0.55.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.55 2025-06-07T05:15:49,568 Found link https://files.pythonhosted.org/packages/60/6a/8d79c33c81564acc4fb99e2d614a7103978fd8023b74957208a4895b0feb/rcsb_workflow-0.56.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.56 2025-06-07T05:15:49,569 Found link https://files.pythonhosted.org/packages/92/15/a4340fd88050a6f11eed6f359bd468e0fa87fe628696986bd9a3e389c982/rcsb_workflow-0.57.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.57 2025-06-07T05:15:49,570 Found link https://files.pythonhosted.org/packages/28/be/8eca04af4129cb68fefc96cc9c79253285fb8aaae20f4f45c18fc23922fb/rcsb_workflow-0.58.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.58 2025-06-07T05:15:49,570 Found link https://files.pythonhosted.org/packages/37/c5/d27df93f8c3f6b83960402a2b5f37a088fef0179082a121194a7a82de58c/rcsb_workflow-0.59.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.59 2025-06-07T05:15:49,571 Fetching project page and analyzing links: https://www.piwheels.org/simple/rcsb-workflow/ 2025-06-07T05:15:49,572 Getting page https://www.piwheels.org/simple/rcsb-workflow/ 2025-06-07T05:15:49,573 Found index url https://www.piwheels.org/simple/ 2025-06-07T05:15:49,723 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/rcsb-workflow/ 2025-06-07T05:15:50,371 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/rcsb-workflow/ 2025-06-07T05:15:51,578 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/rcsb-workflow/ 2025-06-07T05:15:53,774 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/rcsb-workflow/ 2025-06-07T05:15:57,987 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/rcsb-workflow/ 2025-06-07T05:15:58,200 Could not fetch URL https://www.piwheels.org/simple/rcsb-workflow/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/rcsb-workflow/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping 2025-06-07T05:15:58,202 Skipping link: not a file: https://www.piwheels.org/simple/rcsb-workflow/ 2025-06-07T05:15:58,203 Skipping link: not a file: https://pypi.org/simple/rcsb-workflow/ 2025-06-07T05:15:58,225 Given no hashes to check 1 links for project 'rcsb-workflow': discarding no candidates 2025-06-07T05:15:58,226 Collecting rcsb-workflow==0.54 2025-06-07T05:15:58,229 Created temporary directory: /tmp/pip-unpack-oetwro7s 2025-06-07T05:15:58,460 Downloading rcsb_workflow-0.54.tar.gz (33 kB) 2025-06-07T05:15:58,539 Added rcsb-workflow==0.54 from https://files.pythonhosted.org/packages/f5/9b/c27f5e9b2a3183d5b87731d8cb368669721ad60def6b261f2410e67ae75a/rcsb_workflow-0.54.tar.gz to build tracker '/tmp/pip-build-tracker-__sxbxi4' 2025-06-07T05:15:58,542 Running setup.py (path:/tmp/pip-wheel-jb60ndx9/rcsb-workflow_812463375b7640028d7c86fa18294bca/setup.py) egg_info for package rcsb-workflow 2025-06-07T05:15:58,542 Created temporary directory: /tmp/pip-pip-egg-info-qd89mau6 2025-06-07T05:15:58,543 Preparing metadata (setup.py): started 2025-06-07T05:15:58,544 Running command python setup.py egg_info 2025-06-07T05:15:59,148 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-06-07T05:15:59,148 warnings.warn(msg) 2025-06-07T05:15:59,149 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-06-07T05:15:59,149 warnings.warn(msg) 2025-06-07T05:15:59,462 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-06-07T05:15:59,462 !! 2025-06-07T05:15:59,463 ******************************************************************************** 2025-06-07T05:15:59,464 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-06-07T05:15:59,465 License :: OSI Approved :: Apache Software License 2025-06-07T05:15:59,466 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-07T05:15:59,467 ******************************************************************************** 2025-06-07T05:15:59,468 !! 2025-06-07T05:15:59,469 self._finalize_license_expression() 2025-06-07T05:15:59,490 running egg_info 2025-06-07T05:15:59,517 creating /tmp/pip-pip-egg-info-qd89mau6/rcsb.workflow.egg-info 2025-06-07T05:15:59,518 writing /tmp/pip-pip-egg-info-qd89mau6/rcsb.workflow.egg-info/PKG-INFO 2025-06-07T05:15:59,523 writing dependency_links to /tmp/pip-pip-egg-info-qd89mau6/rcsb.workflow.egg-info/dependency_links.txt 2025-06-07T05:15:59,524 writing entry points to /tmp/pip-pip-egg-info-qd89mau6/rcsb.workflow.egg-info/entry_points.txt 2025-06-07T05:15:59,526 writing requirements to /tmp/pip-pip-egg-info-qd89mau6/rcsb.workflow.egg-info/requires.txt 2025-06-07T05:15:59,528 writing top-level names to /tmp/pip-pip-egg-info-qd89mau6/rcsb.workflow.egg-info/top_level.txt 2025-06-07T05:15:59,529 writing manifest file '/tmp/pip-pip-egg-info-qd89mau6/rcsb.workflow.egg-info/SOURCES.txt' 2025-06-07T05:15:59,629 reading manifest file '/tmp/pip-pip-egg-info-qd89mau6/rcsb.workflow.egg-info/SOURCES.txt' 2025-06-07T05:15:59,631 reading manifest template 'MANIFEST.in' 2025-06-07T05:15:59,632 adding license file 'LICENSE' 2025-06-07T05:15:59,635 writing manifest file '/tmp/pip-pip-egg-info-qd89mau6/rcsb.workflow.egg-info/SOURCES.txt' 2025-06-07T05:15:59,742 Preparing metadata (setup.py): finished with status 'done' 2025-06-07T05:15:59,746 Source in /tmp/pip-wheel-jb60ndx9/rcsb-workflow_812463375b7640028d7c86fa18294bca has version 0.54, which satisfies requirement rcsb-workflow==0.54 from https://files.pythonhosted.org/packages/f5/9b/c27f5e9b2a3183d5b87731d8cb368669721ad60def6b261f2410e67ae75a/rcsb_workflow-0.54.tar.gz 2025-06-07T05:15:59,747 Removed rcsb-workflow==0.54 from https://files.pythonhosted.org/packages/f5/9b/c27f5e9b2a3183d5b87731d8cb368669721ad60def6b261f2410e67ae75a/rcsb_workflow-0.54.tar.gz from build tracker '/tmp/pip-build-tracker-__sxbxi4' 2025-06-07T05:15:59,755 Created temporary directory: /tmp/pip-unpack-7j7hy776 2025-06-07T05:15:59,756 Created temporary directory: /tmp/pip-unpack-rajd7qpa 2025-06-07T05:15:59,756 Building wheels for collected packages: rcsb-workflow 2025-06-07T05:15:59,761 Created temporary directory: /tmp/pip-wheel-wckeipkq 2025-06-07T05:15:59,761 DEPRECATION: Building 'rcsb-workflow' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'rcsb-workflow'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-06-07T05:15:59,763 Building wheel for rcsb-workflow (setup.py): started 2025-06-07T05:15:59,764 Destination directory: /tmp/pip-wheel-wckeipkq 2025-06-07T05:15:59,764 Running command python setup.py bdist_wheel 2025-06-07T05:16:00,298 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-06-07T05:16:00,298 warnings.warn(msg) 2025-06-07T05:16:00,299 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-06-07T05:16:00,299 warnings.warn(msg) 2025-06-07T05:16:00,590 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-06-07T05:16:00,591 !! 2025-06-07T05:16:00,592 ******************************************************************************** 2025-06-07T05:16:00,593 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-06-07T05:16:00,594 License :: OSI Approved :: Apache Software License 2025-06-07T05:16:00,595 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-07T05:16:00,596 ******************************************************************************** 2025-06-07T05:16:00,597 !! 2025-06-07T05:16:00,597 self._finalize_license_expression() 2025-06-07T05:16:00,598 running bdist_wheel 2025-06-07T05:16:00,674 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:135: SetuptoolsDeprecationWarning: bdist_wheel.universal is deprecated 2025-06-07T05:16:00,674 !! 2025-06-07T05:16:00,675 ******************************************************************************** 2025-06-07T05:16:00,676 With Python 2.7 end-of-life, support for building universal wheels 2025-06-07T05:16:00,677 (i.e., wheels that support both Python 2 and Python 3) 2025-06-07T05:16:00,677 is being obviated. 2025-06-07T05:16:00,678 Please discontinue using this option, or if you still need it, 2025-06-07T05:16:00,678 file an issue with pypa/setuptools describing your use case. 2025-06-07T05:16:00,680 By 2025-Aug-30, you need to update your project and remove deprecated calls 2025-06-07T05:16:00,680 or your builds will no longer be supported. 2025-06-07T05:16:00,681 ******************************************************************************** 2025-06-07T05:16:00,682 !! 2025-06-07T05:16:00,683 self.finalize_options() 2025-06-07T05:16:00,729 running build 2025-06-07T05:16:00,730 running build_py 2025-06-07T05:16:00,760 creating build/lib/rcsb 2025-06-07T05:16:00,762 copying rcsb/__init__.py -> build/lib/rcsb 2025-06-07T05:16:00,764 creating build/lib/rcsb/workflow 2025-06-07T05:16:00,765 copying rcsb/workflow/__init__.py -> build/lib/rcsb/workflow 2025-06-07T05:16:00,767 creating build/lib/rcsb/workflow/wuw 2025-06-07T05:16:00,768 copying rcsb/workflow/wuw/ExDbWorkflow.py -> build/lib/rcsb/workflow/wuw 2025-06-07T05:16:00,771 copying rcsb/workflow/wuw/BcifWorkflow.py -> build/lib/rcsb/workflow/wuw 2025-06-07T05:16:00,773 copying rcsb/workflow/wuw/__init__.py -> build/lib/rcsb/workflow/wuw 2025-06-07T05:16:00,774 copying rcsb/workflow/wuw/PdbCsmImageWorkflow.py -> build/lib/rcsb/workflow/wuw 2025-06-07T05:16:00,777 creating build/lib/rcsb/workflow/bcif 2025-06-07T05:16:00,778 copying rcsb/workflow/bcif/__init__.py -> build/lib/rcsb/workflow/bcif 2025-06-07T05:16:00,780 copying rcsb/workflow/bcif/task_functions.py -> build/lib/rcsb/workflow/bcif 2025-06-07T05:16:00,783 creating build/lib/rcsb/workflow/chem 2025-06-07T05:16:00,784 copying rcsb/workflow/chem/ChemCompImageWorkflow.py -> build/lib/rcsb/workflow/chem 2025-06-07T05:16:00,786 copying rcsb/workflow/chem/__init__.py -> build/lib/rcsb/workflow/chem 2025-06-07T05:16:00,787 copying rcsb/workflow/chem/ChemCompSearchIndexWorkflow.py -> build/lib/rcsb/workflow/chem 2025-06-07T05:16:00,790 copying rcsb/workflow/chem/ChemCompFileWorkflow.py -> build/lib/rcsb/workflow/chem 2025-06-07T05:16:00,792 creating build/lib/rcsb/workflow/targets 2025-06-07T05:16:00,793 copying rcsb/workflow/targets/ProteinTargetSequenceExecutionWorkflow.py -> build/lib/rcsb/workflow/targets 2025-06-07T05:16:00,796 copying rcsb/workflow/targets/ProteinTargetSequenceWorkflow.py -> build/lib/rcsb/workflow/targets 2025-06-07T05:16:00,798 copying rcsb/workflow/targets/__init__.py -> build/lib/rcsb/workflow/targets 2025-06-07T05:16:00,800 creating build/lib/rcsb/workflow/cli 2025-06-07T05:16:00,801 copying rcsb/workflow/cli/BcifExec.py -> build/lib/rcsb/workflow/cli 2025-06-07T05:16:00,804 copying rcsb/workflow/cli/__init__.py -> build/lib/rcsb/workflow/cli 2025-06-07T05:16:00,805 copying rcsb/workflow/cli/ImgExec.py -> build/lib/rcsb/workflow/cli 2025-06-07T05:16:00,807 copying rcsb/workflow/cli/ExDbExec.py -> build/lib/rcsb/workflow/cli 2025-06-07T05:16:00,849 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-06-07T05:16:00,850 !! 2025-06-07T05:16:00,851 ******************************************************************************** 2025-06-07T05:16:00,852 Please avoid running ``setup.py`` directly. 2025-06-07T05:16:00,852 Instead, use pypa/build, pypa/installer or other 2025-06-07T05:16:00,853 standards-based tools. 2025-06-07T05:16:00,854 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-06-07T05:16:00,854 or your builds will no longer be supported. 2025-06-07T05:16:00,855 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-06-07T05:16:00,856 ******************************************************************************** 2025-06-07T05:16:00,857 !! 2025-06-07T05:16:00,858 self.initialize_options() 2025-06-07T05:16:00,878 installing to build/bdist.linux-armv7l/wheel 2025-06-07T05:16:00,878 running install 2025-06-07T05:16:00,902 running install_lib 2025-06-07T05:16:00,930 creating build/bdist.linux-armv7l/wheel 2025-06-07T05:16:00,932 creating build/bdist.linux-armv7l/wheel/rcsb 2025-06-07T05:16:00,934 creating build/bdist.linux-armv7l/wheel/rcsb/workflow 2025-06-07T05:16:00,936 creating build/bdist.linux-armv7l/wheel/rcsb/workflow/wuw 2025-06-07T05:16:00,937 copying build/lib/rcsb/workflow/wuw/ExDbWorkflow.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/wuw 2025-06-07T05:16:00,940 copying build/lib/rcsb/workflow/wuw/BcifWorkflow.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/wuw 2025-06-07T05:16:00,942 copying build/lib/rcsb/workflow/wuw/__init__.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/wuw 2025-06-07T05:16:00,943 copying build/lib/rcsb/workflow/wuw/PdbCsmImageWorkflow.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/wuw 2025-06-07T05:16:00,946 creating build/bdist.linux-armv7l/wheel/rcsb/workflow/bcif 2025-06-07T05:16:00,947 copying build/lib/rcsb/workflow/bcif/__init__.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/bcif 2025-06-07T05:16:00,949 copying build/lib/rcsb/workflow/bcif/task_functions.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/bcif 2025-06-07T05:16:00,951 copying build/lib/rcsb/workflow/__init__.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow 2025-06-07T05:16:00,953 creating build/bdist.linux-armv7l/wheel/rcsb/workflow/chem 2025-06-07T05:16:00,954 copying build/lib/rcsb/workflow/chem/ChemCompImageWorkflow.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/chem 2025-06-07T05:16:00,957 copying build/lib/rcsb/workflow/chem/__init__.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/chem 2025-06-07T05:16:00,958 copying build/lib/rcsb/workflow/chem/ChemCompSearchIndexWorkflow.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/chem 2025-06-07T05:16:00,960 copying build/lib/rcsb/workflow/chem/ChemCompFileWorkflow.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/chem 2025-06-07T05:16:00,963 creating build/bdist.linux-armv7l/wheel/rcsb/workflow/targets 2025-06-07T05:16:00,964 copying build/lib/rcsb/workflow/targets/ProteinTargetSequenceExecutionWorkflow.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/targets 2025-06-07T05:16:00,967 copying build/lib/rcsb/workflow/targets/ProteinTargetSequenceWorkflow.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/targets 2025-06-07T05:16:00,970 copying build/lib/rcsb/workflow/targets/__init__.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/targets 2025-06-07T05:16:00,972 creating build/bdist.linux-armv7l/wheel/rcsb/workflow/cli 2025-06-07T05:16:00,973 copying build/lib/rcsb/workflow/cli/BcifExec.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/cli 2025-06-07T05:16:00,975 copying build/lib/rcsb/workflow/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/cli 2025-06-07T05:16:00,977 copying build/lib/rcsb/workflow/cli/ImgExec.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/cli 2025-06-07T05:16:00,979 copying build/lib/rcsb/workflow/cli/ExDbExec.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/cli 2025-06-07T05:16:00,982 copying build/lib/rcsb/__init__.py -> build/bdist.linux-armv7l/wheel/./rcsb 2025-06-07T05:16:00,983 running install_egg_info 2025-06-07T05:16:01,018 running egg_info 2025-06-07T05:16:01,046 writing rcsb.workflow.egg-info/PKG-INFO 2025-06-07T05:16:01,050 writing dependency_links to rcsb.workflow.egg-info/dependency_links.txt 2025-06-07T05:16:01,052 writing entry points to rcsb.workflow.egg-info/entry_points.txt 2025-06-07T05:16:01,054 writing requirements to rcsb.workflow.egg-info/requires.txt 2025-06-07T05:16:01,055 writing top-level names to rcsb.workflow.egg-info/top_level.txt 2025-06-07T05:16:01,097 reading manifest file 'rcsb.workflow.egg-info/SOURCES.txt' 2025-06-07T05:16:01,100 reading manifest template 'MANIFEST.in' 2025-06-07T05:16:01,101 adding license file 'LICENSE' 2025-06-07T05:16:01,105 writing manifest file 'rcsb.workflow.egg-info/SOURCES.txt' 2025-06-07T05:16:01,106 Copying rcsb.workflow.egg-info to build/bdist.linux-armv7l/wheel/./rcsb.workflow-0.54-py3.11.egg-info 2025-06-07T05:16:01,120 running install_scripts 2025-06-07T05:16:01,134 creating build/bdist.linux-armv7l/wheel/rcsb_workflow-0.54.dist-info/WHEEL 2025-06-07T05:16:01,137 creating '/tmp/pip-wheel-wckeipkq/rcsb_workflow-0.54-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-06-07T05:16:01,139 adding 'rcsb/__init__.py' 2025-06-07T05:16:01,141 adding 'rcsb/workflow/__init__.py' 2025-06-07T05:16:01,143 adding 'rcsb/workflow/bcif/__init__.py' 2025-06-07T05:16:01,145 adding 'rcsb/workflow/bcif/task_functions.py' 2025-06-07T05:16:01,147 adding 'rcsb/workflow/chem/ChemCompFileWorkflow.py' 2025-06-07T05:16:01,148 adding 'rcsb/workflow/chem/ChemCompImageWorkflow.py' 2025-06-07T05:16:01,150 adding 'rcsb/workflow/chem/ChemCompSearchIndexWorkflow.py' 2025-06-07T05:16:01,151 adding 'rcsb/workflow/chem/__init__.py' 2025-06-07T05:16:01,153 adding 'rcsb/workflow/cli/BcifExec.py' 2025-06-07T05:16:01,155 adding 'rcsb/workflow/cli/ExDbExec.py' 2025-06-07T05:16:01,156 adding 'rcsb/workflow/cli/ImgExec.py' 2025-06-07T05:16:01,157 adding 'rcsb/workflow/cli/__init__.py' 2025-06-07T05:16:01,160 adding 'rcsb/workflow/targets/ProteinTargetSequenceExecutionWorkflow.py' 2025-06-07T05:16:01,163 adding 'rcsb/workflow/targets/ProteinTargetSequenceWorkflow.py' 2025-06-07T05:16:01,164 adding 'rcsb/workflow/targets/__init__.py' 2025-06-07T05:16:01,166 adding 'rcsb/workflow/wuw/BcifWorkflow.py' 2025-06-07T05:16:01,168 adding 'rcsb/workflow/wuw/ExDbWorkflow.py' 2025-06-07T05:16:01,170 adding 'rcsb/workflow/wuw/PdbCsmImageWorkflow.py' 2025-06-07T05:16:01,171 adding 'rcsb/workflow/wuw/__init__.py' 2025-06-07T05:16:01,174 adding 'rcsb_workflow-0.54.dist-info/licenses/LICENSE' 2025-06-07T05:16:01,175 adding 'rcsb_workflow-0.54.dist-info/METADATA' 2025-06-07T05:16:01,176 adding 'rcsb_workflow-0.54.dist-info/WHEEL' 2025-06-07T05:16:01,177 adding 'rcsb_workflow-0.54.dist-info/entry_points.txt' 2025-06-07T05:16:01,178 adding 'rcsb_workflow-0.54.dist-info/top_level.txt' 2025-06-07T05:16:01,179 adding 'rcsb_workflow-0.54.dist-info/RECORD' 2025-06-07T05:16:01,181 removing build/bdist.linux-armv7l/wheel 2025-06-07T05:16:01,300 Building wheel for rcsb-workflow (setup.py): finished with status 'done' 2025-06-07T05:16:01,303 Created wheel for rcsb-workflow: filename=rcsb_workflow-0.54-py2.py3-none-any.whl size=38334 sha256=e3d42595b62decd5ddaf378cd23655bde73b6fdb14baa283754abcdd2167495a 2025-06-07T05:16:01,304 Stored in directory: /tmp/pip-ephem-wheel-cache-beffrayq/wheels/9c/4a/d5/8c40b8501d8e4dc3bc199722d462cac459bce011670101e587 2025-06-07T05:16:01,316 Successfully built rcsb-workflow 2025-06-07T05:16:01,320 Removed build tracker: '/tmp/pip-build-tracker-__sxbxi4'