2025-06-07T18:06:23,924 Created temporary directory: /tmp/pip-build-tracker-n66e5sam
2025-06-07T18:06:23,925 Initialized build tracking at /tmp/pip-build-tracker-n66e5sam
2025-06-07T18:06:23,925 Created build tracker: /tmp/pip-build-tracker-n66e5sam
2025-06-07T18:06:23,926 Entered build tracker: /tmp/pip-build-tracker-n66e5sam
2025-06-07T18:06:23,927 Created temporary directory: /tmp/pip-wheel-j_m_325m
2025-06-07T18:06:23,931 Created temporary directory: /tmp/pip-ephem-wheel-cache-cv2ktr23
2025-06-07T18:06:23,987 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-06-07T18:06:23,990 2 location(s) to search for versions of nextflow:
2025-06-07T18:06:23,990 * https://pypi.org/simple/nextflow/
2025-06-07T18:06:23,990 * https://www.piwheels.org/simple/nextflow/
2025-06-07T18:06:23,991 Fetching project page and analyzing links: https://pypi.org/simple/nextflow/
2025-06-07T18:06:23,991 Getting page https://pypi.org/simple/nextflow/
2025-06-07T18:06:23,993 Found index url https://pypi.org/simple/
2025-06-07T18:06:24,221 Fetched page https://pypi.org/simple/nextflow/ as application/vnd.pypi.simple.v1+json
2025-06-07T18:06:24,229   Found link https://files.pythonhosted.org/packages/d9/3d/162f93ee2c674b19e07782850b8e1044168c3615a9e3e3a9a2d75ad45e8a/nextflow-22.10.1.tar.gz (from https://pypi.org/simple/nextflow/), version: 22.10.1
2025-06-07T18:06:24,230   Found link https://files.pythonhosted.org/packages/0b/00/f6d3c8d84864605147aa79ec17f763fd394f9cfaded672101e3d07bc0345/nextflow-22.10.6.tar.gz (from https://pypi.org/simple/nextflow/), version: 22.10.6
2025-06-07T18:06:24,231   Found link https://files.pythonhosted.org/packages/f5/e8/e0882a1aad0b30b3ac760ae69914ffe986706f12d6539a1c0a08759d0e2b/nextflow-22.10.7.tar.gz (from https://pypi.org/simple/nextflow/), version: 22.10.7
2025-06-07T18:06:24,233   Found link https://files.pythonhosted.org/packages/d5/eb/d7cd6b33724ea6c37f8dfd4ed4354a06ed66e8a87bb6c50cca26afa3d210/nextflow-23.4.1.tar.gz (from https://pypi.org/simple/nextflow/), version: 23.4.1
2025-06-07T18:06:24,234   Found link https://files.pythonhosted.org/packages/77/eb/6f5e7d09188ac1fedc1b20c5bb3c679302cda22398c49682f8f3213565db/nextflow-23.4.2.tar.gz (from https://pypi.org/simple/nextflow/), version: 23.4.2
2025-06-07T18:06:24,235   Found link https://files.pythonhosted.org/packages/37/0f/cd4e2d76402ebd60994753df846a4581fe1cd2c5c8ecfad4a0758328edf9/nextflow-23.4.3.tar.gz (from https://pypi.org/simple/nextflow/), version: 23.4.3
2025-06-07T18:06:24,236   Found link https://files.pythonhosted.org/packages/7f/a1/ef4e714fdc8de1cf27f285565feea47eec4c85b96fc9063a07fe8215ef83/nextflow-23.4.4.tar.gz (from https://pypi.org/simple/nextflow/), version: 23.4.4
2025-06-07T18:06:24,238   Found link https://files.pythonhosted.org/packages/5d/28/eb02b1a65c49e3b2dffd9d42e711e0544ee9db637cd4ca43b0c1a64e0eb4/nextflow-23.10.0.tar.gz (from https://pypi.org/simple/nextflow/), version: 23.10.0
2025-06-07T18:06:24,239   Found link https://files.pythonhosted.org/packages/83/af/626ea17fa51a5397849f286ffb2c88e661e1498078b337287c8deee86ba6/nextflow-23.10.1.tar.gz (from https://pypi.org/simple/nextflow/), version: 23.10.1
2025-06-07T18:06:24,240   Found link https://files.pythonhosted.org/packages/c4/9b/9cfb11bf3e9f51644b177c1ef2c635b11e96aedea5a40fd5839d197de7bd/nextflow-24.4.1.tar.gz (from https://pypi.org/simple/nextflow/), version: 24.4.1
2025-06-07T18:06:24,241   Found link https://files.pythonhosted.org/packages/e3/bd/c2bbb7c09b5c88d1521f40025c5ddec825b5c789f374242afbffba08c84b/nextflow-24.4.2.tar.gz (from https://pypi.org/simple/nextflow/), version: 24.4.2
2025-06-07T18:06:24,241   Found link https://files.pythonhosted.org/packages/5d/f7/65b3d0d6efa2d1dc0a74295b0bafac940349fb553ff77aecc2b19341206c/nextflow-24.4.3.tar.gz (from https://pypi.org/simple/nextflow/), version: 24.4.3
2025-06-07T18:06:24,242   Found link https://files.pythonhosted.org/packages/0e/b6/cecfb82e6f67273377507d12df3bed4ac8ddc31a5761c98ce8ab3edf4454/nextflow-24.4.4.tar.gz (from https://pypi.org/simple/nextflow/), version: 24.4.4
2025-06-07T18:06:24,243   Found link https://files.pythonhosted.org/packages/29/52/547b169dda8bf4f6586ee7c81cb6a3fd74ac87ec0cf7d1f23afb417103b0/nextflow-24.10.0.tar.gz (from https://pypi.org/simple/nextflow/), version: 24.10.0
2025-06-07T18:06:24,244   Found link https://files.pythonhosted.org/packages/bc/d7/bc5630f756cafca449c5417b0eb5f7681240355648ca5921dc58c7e070a8/nextflow-24.10.1.tar.gz (from https://pypi.org/simple/nextflow/), version: 24.10.1
2025-06-07T18:06:24,244   Found link https://files.pythonhosted.org/packages/32/2c/5431a119fc06d69c27010b0ac7d75c876c6e50e62e86df336c499b7a2c42/nextflow-24.10.2.tar.gz (from https://pypi.org/simple/nextflow/), version: 24.10.2
2025-06-07T18:06:24,245   Found link https://files.pythonhosted.org/packages/d8/70/658e28cc6c6d748a6928242c945fff4c67bd899371e7fcf11efe6157dfe5/nextflow-24.10.3.tar.gz (from https://pypi.org/simple/nextflow/), version: 24.10.3
2025-06-07T18:06:24,245   Found link https://files.pythonhosted.org/packages/ad/db/ad2476c9143c0b97433f4a25e131fc688e22937299f2e26d88436b543bdd/nextflow-24.10.4.tar.gz (from https://pypi.org/simple/nextflow/), version: 24.10.4
2025-06-07T18:06:24,246   Found link https://files.pythonhosted.org/packages/9c/e3/198614b09b818bfd34c93c12cc0cf0d64c0564abe782da5926a121a03953/nextflow-24.10.5.tar.gz (from https://pypi.org/simple/nextflow/), version: 24.10.5
2025-06-07T18:06:24,247   Found link https://files.pythonhosted.org/packages/20/01/e7b5496d393768cdbb2b411667143e18967acd11bce422c74d8408e87920/nextflow-24.10.6.tar.gz (from https://pypi.org/simple/nextflow/), version: 24.10.6
2025-06-07T18:06:24,247   Found link https://files.pythonhosted.org/packages/ee/b8/7e58d579482fb167fa63e166b8415bf763e07ecb1cf81ed1a56a50438a34/nextflow-25.4.2.tar.gz (from https://pypi.org/simple/nextflow/), version: 25.4.2
2025-06-07T18:06:24,248   Found link https://files.pythonhosted.org/packages/54/e2/2eec0a6a051dba0399c7e551b1c57a23195ef0f7473cf23c6c49f8bf8519/nextflow-25.4.3.tar.gz (from https://pypi.org/simple/nextflow/), version: 25.4.3
2025-06-07T18:06:24,248   Found link https://files.pythonhosted.org/packages/24/32/5601f3200f50cb2a55ca7bbddabd19c847a28df6837ce471ec1359ddb547/nextflow-25.4.4.tar.gz (from https://pypi.org/simple/nextflow/), version: 25.4.4
2025-06-07T18:06:24,249   Found link https://files.pythonhosted.org/packages/41/84/d3b4acdbed60bec196312c206722cee3c7bc151ff9d8e853506602eb2d99/nextflow-25.4.6.tar.gz (from https://pypi.org/simple/nextflow/), version: 25.4.6
2025-06-07T18:06:24,250 Fetching project page and analyzing links: https://www.piwheels.org/simple/nextflow/
2025-06-07T18:06:24,251 Getting page https://www.piwheels.org/simple/nextflow/
2025-06-07T18:06:24,252 Found index url https://www.piwheels.org/simple/
2025-06-07T18:06:24,405 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/nextflow/
2025-06-07T18:06:25,064 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/nextflow/
2025-06-07T18:06:26,233 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/nextflow/
2025-06-07T18:06:28,413 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/nextflow/
2025-06-07T18:06:32,584 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/nextflow/
2025-06-07T18:06:32,769 Could not fetch URL https://www.piwheels.org/simple/nextflow/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/nextflow/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping
2025-06-07T18:06:32,771 Skipping link: not a file: https://www.piwheels.org/simple/nextflow/
2025-06-07T18:06:32,771 Skipping link: not a file: https://pypi.org/simple/nextflow/
2025-06-07T18:06:32,794 Given no hashes to check 1 links for project 'nextflow': discarding no candidates
2025-06-07T18:06:32,795 Collecting nextflow==25.4.2
2025-06-07T18:06:32,798   Created temporary directory: /tmp/pip-unpack-vvge8drk
2025-06-07T18:06:33,208   Downloading nextflow-25.4.2.tar.gz (7.7 kB)
2025-06-07T18:06:33,247   Added nextflow==25.4.2 from https://files.pythonhosted.org/packages/ee/b8/7e58d579482fb167fa63e166b8415bf763e07ecb1cf81ed1a56a50438a34/nextflow-25.4.2.tar.gz to build tracker '/tmp/pip-build-tracker-n66e5sam'
2025-06-07T18:06:33,249   Running setup.py (path:/tmp/pip-wheel-j_m_325m/nextflow_18d352c25ca546078b461832bdbae7c6/setup.py) egg_info for package nextflow
2025-06-07T18:06:33,250   Created temporary directory: /tmp/pip-pip-egg-info-3uxgadpg
2025-06-07T18:06:33,251   Preparing metadata (setup.py): started
2025-06-07T18:06:33,252   Running command python setup.py egg_info
2025-06-07T18:06:34,149   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:332: InformationOnly: Normalizing '25.04.2' to '25.4.2'
2025-06-07T18:06:34,149     self.metadata.version = self._normalize_version(self.metadata.version)
2025-06-07T18:06:34,151   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-06-07T18:06:34,151   !!

2025-06-07T18:06:34,152           ********************************************************************************
2025-06-07T18:06:34,153           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-06-07T18:06:34,154           License :: OSI Approved :: Apache Software License

2025-06-07T18:06:34,156           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-06-07T18:06:34,156           ********************************************************************************

2025-06-07T18:06:34,157   !!
2025-06-07T18:06:34,158     self._finalize_license_expression()
2025-06-07T18:06:34,181   running egg_info
2025-06-07T18:06:34,211   creating /tmp/pip-pip-egg-info-3uxgadpg/nextflow.egg-info
2025-06-07T18:06:34,212   writing /tmp/pip-pip-egg-info-3uxgadpg/nextflow.egg-info/PKG-INFO
2025-06-07T18:06:34,215   writing dependency_links to /tmp/pip-pip-egg-info-3uxgadpg/nextflow.egg-info/dependency_links.txt
2025-06-07T18:06:34,218   writing top-level names to /tmp/pip-pip-egg-info-3uxgadpg/nextflow.egg-info/top_level.txt
2025-06-07T18:06:34,219   writing manifest file '/tmp/pip-pip-egg-info-3uxgadpg/nextflow.egg-info/SOURCES.txt'
2025-06-07T18:06:34,306   reading manifest file '/tmp/pip-pip-egg-info-3uxgadpg/nextflow.egg-info/SOURCES.txt'
2025-06-07T18:06:34,310   writing manifest file '/tmp/pip-pip-egg-info-3uxgadpg/nextflow.egg-info/SOURCES.txt'
2025-06-07T18:06:34,415   Preparing metadata (setup.py): finished with status 'done'
2025-06-07T18:06:34,419   Source in /tmp/pip-wheel-j_m_325m/nextflow_18d352c25ca546078b461832bdbae7c6 has version 25.4.2, which satisfies requirement nextflow==25.4.2 from https://files.pythonhosted.org/packages/ee/b8/7e58d579482fb167fa63e166b8415bf763e07ecb1cf81ed1a56a50438a34/nextflow-25.4.2.tar.gz
2025-06-07T18:06:34,420   Removed nextflow==25.4.2 from https://files.pythonhosted.org/packages/ee/b8/7e58d579482fb167fa63e166b8415bf763e07ecb1cf81ed1a56a50438a34/nextflow-25.4.2.tar.gz from build tracker '/tmp/pip-build-tracker-n66e5sam'
2025-06-07T18:06:34,424 Created temporary directory: /tmp/pip-unpack-f8sh9lnz
2025-06-07T18:06:34,426 Created temporary directory: /tmp/pip-unpack-8kfo8uly
2025-06-07T18:06:34,426 Building wheels for collected packages: nextflow
2025-06-07T18:06:34,430   Created temporary directory: /tmp/pip-wheel-wnlzlzyl
2025-06-07T18:06:34,431   DEPRECATION: Building 'nextflow' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'nextflow'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-06-07T18:06:34,433   Building wheel for nextflow (setup.py): started
2025-06-07T18:06:34,434   Destination directory: /tmp/pip-wheel-wnlzlzyl
2025-06-07T18:06:34,434   Running command python setup.py bdist_wheel
2025-06-07T18:06:35,279   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:332: InformationOnly: Normalizing '25.04.2' to '25.4.2'
2025-06-07T18:06:35,279     self.metadata.version = self._normalize_version(self.metadata.version)
2025-06-07T18:06:35,281   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-06-07T18:06:35,281   !!

2025-06-07T18:06:35,282           ********************************************************************************
2025-06-07T18:06:35,283           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-06-07T18:06:35,284           License :: OSI Approved :: Apache Software License

2025-06-07T18:06:35,285           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-06-07T18:06:35,286           ********************************************************************************

2025-06-07T18:06:35,287   !!
2025-06-07T18:06:35,288     self._finalize_license_expression()
2025-06-07T18:06:35,288   running bdist_wheel
2025-06-07T18:06:35,423   running build
2025-06-07T18:06:35,424   running build_scripts
2025-06-07T18:06:35,425   creating build/scripts-3.11
2025-06-07T18:06:35,427   copying launcher/nextflow -> build/scripts-3.11
2025-06-07T18:06:35,429   changing mode of build/scripts-3.11/nextflow from 644 to 755
2025-06-07T18:06:35,461   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-06-07T18:06:35,461   !!

2025-06-07T18:06:35,462           ********************************************************************************
2025-06-07T18:06:35,463           Please avoid running ``setup.py`` directly.
2025-06-07T18:06:35,464           Instead, use pypa/build, pypa/installer or other
2025-06-07T18:06:35,464           standards-based tools.

2025-06-07T18:06:35,465           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-06-07T18:06:35,466           or your builds will no longer be supported.

2025-06-07T18:06:35,467           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-06-07T18:06:35,468           ********************************************************************************

2025-06-07T18:06:35,469   !!
2025-06-07T18:06:35,470     self.initialize_options()
2025-06-07T18:06:35,492   installing to build/bdist.linux-armv7l/wheel
2025-06-07T18:06:35,493   running install
2025-06-07T18:06:35,518   running install_egg_info
2025-06-07T18:06:35,578   running egg_info
2025-06-07T18:06:35,605   writing nextflow.egg-info/PKG-INFO
2025-06-07T18:06:35,608   writing dependency_links to nextflow.egg-info/dependency_links.txt
2025-06-07T18:06:35,610   writing top-level names to nextflow.egg-info/top_level.txt
2025-06-07T18:06:35,640   reading manifest file 'nextflow.egg-info/SOURCES.txt'
2025-06-07T18:06:35,646   writing manifest file 'nextflow.egg-info/SOURCES.txt'
2025-06-07T18:06:35,648   Copying nextflow.egg-info to build/bdist.linux-armv7l/wheel/./nextflow-25.4.2-py3.11.egg-info
2025-06-07T18:06:35,659   running install_scripts
2025-06-07T18:06:35,660   creating build/bdist.linux-armv7l/wheel/nextflow-25.4.2.data/scripts
2025-06-07T18:06:35,662   copying build/scripts-3.11/nextflow -> build/bdist.linux-armv7l/wheel/nextflow-25.4.2.data/scripts
2025-06-07T18:06:35,665   changing mode of build/bdist.linux-armv7l/wheel/nextflow-25.4.2.data/scripts/nextflow to 755
2025-06-07T18:06:35,675   creating build/bdist.linux-armv7l/wheel/nextflow-25.4.2.dist-info/WHEEL
2025-06-07T18:06:35,678   creating '/tmp/pip-wheel-wnlzlzyl/nextflow-25.4.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-06-07T18:06:35,683   adding 'nextflow-25.4.2.data/scripts/nextflow'
2025-06-07T18:06:35,685   adding 'nextflow-25.4.2.dist-info/METADATA'
2025-06-07T18:06:35,686   adding 'nextflow-25.4.2.dist-info/WHEEL'
2025-06-07T18:06:35,687   adding 'nextflow-25.4.2.dist-info/top_level.txt'
2025-06-07T18:06:35,688   adding 'nextflow-25.4.2.dist-info/RECORD'
2025-06-07T18:06:35,690   removing build/bdist.linux-armv7l/wheel
2025-06-07T18:06:35,800   Building wheel for nextflow (setup.py): finished with status 'done'
2025-06-07T18:06:35,803   Created wheel for nextflow: filename=nextflow-25.4.2-py3-none-any.whl size=7855 sha256=ad4644169d92d94a8483af9489ab3ae01ca438e46b4d2eb6178fec59ede33b56
2025-06-07T18:06:35,804   Stored in directory: /tmp/pip-ephem-wheel-cache-cv2ktr23/wheels/52/23/9b/6626911365f99f1e8e365f6f91c192ca3018bd09ef2d3d0188
2025-06-07T18:06:35,813 Successfully built nextflow
2025-06-07T18:06:35,817 Removed build tracker: '/tmp/pip-build-tracker-n66e5sam'