2025-06-07T10:18:09,201 Created temporary directory: /tmp/pip-build-tracker-25fmabiz
2025-06-07T10:18:09,202 Initialized build tracking at /tmp/pip-build-tracker-25fmabiz
2025-06-07T10:18:09,203 Created build tracker: /tmp/pip-build-tracker-25fmabiz
2025-06-07T10:18:09,203 Entered build tracker: /tmp/pip-build-tracker-25fmabiz
2025-06-07T10:18:09,204 Created temporary directory: /tmp/pip-wheel-vp2w7jea
2025-06-07T10:18:09,208 Created temporary directory: /tmp/pip-ephem-wheel-cache-fzcvuxz3
2025-06-07T10:18:09,260 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-06-07T10:18:09,263 2 location(s) to search for versions of strucgap:
2025-06-07T10:18:09,263 * https://pypi.org/simple/strucgap/
2025-06-07T10:18:09,263 * https://www.piwheels.org/simple/strucgap/
2025-06-07T10:18:09,263 Fetching project page and analyzing links: https://pypi.org/simple/strucgap/
2025-06-07T10:18:09,264 Getting page https://pypi.org/simple/strucgap/
2025-06-07T10:18:09,266 Found index url https://pypi.org/simple/
2025-06-07T10:18:09,416 Fetched page https://pypi.org/simple/strucgap/ as application/vnd.pypi.simple.v1+json
2025-06-07T10:18:09,419   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/d4/cf/908ee965464dceab500051b070d301fc648f14f165918a250643f754312c/strucgap-1.0.1-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-07T10:18:09,420   Found link https://files.pythonhosted.org/packages/e4/ed/c84c67d5cb18aa5d6c871bc5abb254e198230535214a7cf8f003ecf813ae/strucgap-1.0.1.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.1
2025-06-07T10:18:09,421   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/e6/0a/417b6b5e0043e5a5e92598e60b289e11bbf3a1921db8a06967ac26c821ab/strucgap-1.0.2-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-07T10:18:09,421   Found link https://files.pythonhosted.org/packages/80/b5/c0a8aca19ac9b3b37852926dab5aef22813bfb7db17e022907b7513751cd/strucgap-1.0.2.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.2
2025-06-07T10:18:09,422   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/6c/8a/8046fc9d7585c40b76f94bcc0f51462b26b460ef72eaba283adc359b1414/strucgap-1.0.3-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-07T10:18:09,423   Found link https://files.pythonhosted.org/packages/36/64/97df6dbf736d30b1ed5a0f11b09513d266c5451783575b47fadd5ba720f7/strucgap-1.0.3.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.3
2025-06-07T10:18:09,424   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/4c/cf/29374aca5d9a6e4dcb92da71d7c737883fea9dc0c784add2f46b047bcdb3/strucgap-1.0.4-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-07T10:18:09,425   Found link https://files.pythonhosted.org/packages/f7/a4/54678a7f65da22ad9bf8c1fbc22ff415a1c4c59b190aa2cc0ab02bc71a27/strucgap-1.0.4.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.4
2025-06-07T10:18:09,426   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/3e/0a/acfe362babd9946aee23c5c9b973b22704fdd4625b21d3aefc3158469a8f/strucgap-1.0.5-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-07T10:18:09,426   Found link https://files.pythonhosted.org/packages/31/14/c9640736615f7b3cd7300f1146d0f6c3c707a24e604b663635e89fb72f74/strucgap-1.0.5.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.5
2025-06-07T10:18:09,427   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/19/2b/a229156141e4f96b442c92afa912d9dc7ff7ca93d4fd40498b412eb2e492/strucgap-1.0.6-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-07T10:18:09,428   Found link https://files.pythonhosted.org/packages/47/e1/49002ee8fee4ea83a29298aeadb5da1cad51e30702a716412b435796e909/strucgap-1.0.6.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.6
2025-06-07T10:18:09,429   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/f5/96/a6e1a5e8ddaa8319d34850b3a6ee7abc4cb4a45cab48147b26c76a355af2/strucgap-1.0.7-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-07T10:18:09,430   Found link https://files.pythonhosted.org/packages/61/54/ca1a7a265a6b1ab75b75bd1d707aa4d66a91f69dd4491dbcd23a5b1d96bc/strucgap-1.0.7.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.7
2025-06-07T10:18:09,430   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/a5/9d/28f80481e570ce67b245dc87afdefa13a5a3200a6f53baccfdd8d7683250/strucgap-1.0.8-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-07T10:18:09,431   Found link https://files.pythonhosted.org/packages/f3/20/5427f3d9632c77f35f2d3d0565ebdf4c63366100b5c96fa50ebdfcc6a8a2/strucgap-1.0.8.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.8
2025-06-07T10:18:09,431 Fetching project page and analyzing links: https://www.piwheels.org/simple/strucgap/
2025-06-07T10:18:09,432 Getting page https://www.piwheels.org/simple/strucgap/
2025-06-07T10:18:09,434 Found index url https://www.piwheels.org/simple/
2025-06-07T10:18:09,592 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/strucgap/
2025-06-07T10:18:10,253 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/strucgap/
2025-06-07T10:18:11,418 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/strucgap/
2025-06-07T10:18:13,590 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/strucgap/
2025-06-07T10:18:17,766 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/strucgap/
2025-06-07T10:18:17,940 Could not fetch URL https://www.piwheels.org/simple/strucgap/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/strucgap/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping
2025-06-07T10:18:17,942 Skipping link: not a file: https://www.piwheels.org/simple/strucgap/
2025-06-07T10:18:17,942 Skipping link: not a file: https://pypi.org/simple/strucgap/
2025-06-07T10:18:17,965 Given no hashes to check 1 links for project 'strucgap': discarding no candidates
2025-06-07T10:18:17,967 Collecting strucgap==1.0.3
2025-06-07T10:18:17,969   Created temporary directory: /tmp/pip-unpack-7n_peq1u
2025-06-07T10:18:18,194   Downloading strucgap-1.0.3.tar.gz (111 kB)
2025-06-07T10:18:18,344   Added strucgap==1.0.3 from https://files.pythonhosted.org/packages/36/64/97df6dbf736d30b1ed5a0f11b09513d266c5451783575b47fadd5ba720f7/strucgap-1.0.3.tar.gz to build tracker '/tmp/pip-build-tracker-25fmabiz'
2025-06-07T10:18:18,346   Running setup.py (path:/tmp/pip-wheel-vp2w7jea/strucgap_e24e9cb9ba114ce3901e006b37bba437/setup.py) egg_info for package strucgap
2025-06-07T10:18:18,348   Created temporary directory: /tmp/pip-pip-egg-info-yg5wrg3u
2025-06-07T10:18:18,348   Preparing metadata (setup.py): started
2025-06-07T10:18:18,350   Running command python setup.py egg_info
2025-06-07T10:18:19,257   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-06-07T10:18:19,257   !!

2025-06-07T10:18:19,258           ********************************************************************************
2025-06-07T10:18:19,259           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-06-07T10:18:19,260           License :: OSI Approved :: MIT License

2025-06-07T10:18:19,261           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-06-07T10:18:19,261           ********************************************************************************

2025-06-07T10:18:19,262   !!
2025-06-07T10:18:19,263     self._finalize_license_expression()
2025-06-07T10:18:19,287   running egg_info
2025-06-07T10:18:19,316   creating /tmp/pip-pip-egg-info-yg5wrg3u/strucgap.egg-info
2025-06-07T10:18:19,317   writing /tmp/pip-pip-egg-info-yg5wrg3u/strucgap.egg-info/PKG-INFO
2025-06-07T10:18:19,320   writing dependency_links to /tmp/pip-pip-egg-info-yg5wrg3u/strucgap.egg-info/dependency_links.txt
2025-06-07T10:18:19,323   writing requirements to /tmp/pip-pip-egg-info-yg5wrg3u/strucgap.egg-info/requires.txt
2025-06-07T10:18:19,324   writing top-level names to /tmp/pip-pip-egg-info-yg5wrg3u/strucgap.egg-info/top_level.txt
2025-06-07T10:18:19,325   writing manifest file '/tmp/pip-pip-egg-info-yg5wrg3u/strucgap.egg-info/SOURCES.txt'
2025-06-07T10:18:19,417   reading manifest file '/tmp/pip-pip-egg-info-yg5wrg3u/strucgap.egg-info/SOURCES.txt'
2025-06-07T10:18:19,421   writing manifest file '/tmp/pip-pip-egg-info-yg5wrg3u/strucgap.egg-info/SOURCES.txt'
2025-06-07T10:18:19,526   Preparing metadata (setup.py): finished with status 'done'
2025-06-07T10:18:19,531   Source in /tmp/pip-wheel-vp2w7jea/strucgap_e24e9cb9ba114ce3901e006b37bba437 has version 1.0.3, which satisfies requirement strucgap==1.0.3 from https://files.pythonhosted.org/packages/36/64/97df6dbf736d30b1ed5a0f11b09513d266c5451783575b47fadd5ba720f7/strucgap-1.0.3.tar.gz
2025-06-07T10:18:19,532   Removed strucgap==1.0.3 from https://files.pythonhosted.org/packages/36/64/97df6dbf736d30b1ed5a0f11b09513d266c5451783575b47fadd5ba720f7/strucgap-1.0.3.tar.gz from build tracker '/tmp/pip-build-tracker-25fmabiz'
2025-06-07T10:18:19,541 Created temporary directory: /tmp/pip-unpack-y3l3lr53
2025-06-07T10:18:19,543 Created temporary directory: /tmp/pip-unpack-oogld1tw
2025-06-07T10:18:19,543 Building wheels for collected packages: strucgap
2025-06-07T10:18:19,548   Created temporary directory: /tmp/pip-wheel-s2ho65bn
2025-06-07T10:18:19,549   DEPRECATION: Building 'strucgap' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'strucgap'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-06-07T10:18:19,550   Building wheel for strucgap (setup.py): started
2025-06-07T10:18:19,552   Destination directory: /tmp/pip-wheel-s2ho65bn
2025-06-07T10:18:19,552   Running command python setup.py bdist_wheel
2025-06-07T10:18:20,409   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-06-07T10:18:20,409   !!

2025-06-07T10:18:20,411           ********************************************************************************
2025-06-07T10:18:20,411           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-06-07T10:18:20,413           License :: OSI Approved :: MIT License

2025-06-07T10:18:20,414           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-06-07T10:18:20,414           ********************************************************************************

2025-06-07T10:18:20,415   !!
2025-06-07T10:18:20,416     self._finalize_license_expression()
2025-06-07T10:18:20,416   running bdist_wheel
2025-06-07T10:18:20,552   running build
2025-06-07T10:18:20,553   running build_py
2025-06-07T10:18:20,584   creating build/lib/strucgap
2025-06-07T10:18:20,586   copying strucgap/glycopeptidequant.py -> build/lib/strucgap
2025-06-07T10:18:20,591   copying strucgap/datavisualization.py -> build/lib/strucgap
2025-06-07T10:18:20,599   copying strucgap/functionannotation.py -> build/lib/strucgap
2025-06-07T10:18:20,604   copying strucgap/insighttracker.py -> build/lib/strucgap
2025-06-07T10:18:20,607   copying strucgap/glycosite.py -> build/lib/strucgap
2025-06-07T10:18:20,610   copying strucgap/preprocess.py -> build/lib/strucgap
2025-06-07T10:18:20,613   copying strucgap/__init__.py -> build/lib/strucgap
2025-06-07T10:18:20,615   copying strucgap/glycanstructure.py -> build/lib/strucgap
2025-06-07T10:18:20,620   copying strucgap/glyconetwork.py -> build/lib/strucgap
2025-06-07T10:18:20,657   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-06-07T10:18:20,658   !!

2025-06-07T10:18:20,659           ********************************************************************************
2025-06-07T10:18:20,659           Please avoid running ``setup.py`` directly.
2025-06-07T10:18:20,660           Instead, use pypa/build, pypa/installer or other
2025-06-07T10:18:20,661           standards-based tools.

2025-06-07T10:18:20,662           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-06-07T10:18:20,663           or your builds will no longer be supported.

2025-06-07T10:18:20,664           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-06-07T10:18:20,665           ********************************************************************************

2025-06-07T10:18:20,666   !!
2025-06-07T10:18:20,666     self.initialize_options()
2025-06-07T10:18:20,690   installing to build/bdist.linux-armv7l/wheel
2025-06-07T10:18:20,691   running install
2025-06-07T10:18:20,716   running install_lib
2025-06-07T10:18:20,743   creating build/bdist.linux-armv7l/wheel
2025-06-07T10:18:20,746   creating build/bdist.linux-armv7l/wheel/strucgap
2025-06-07T10:18:20,747   copying build/lib/strucgap/glycopeptidequant.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-07T10:18:20,752   copying build/lib/strucgap/datavisualization.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-07T10:18:20,761   copying build/lib/strucgap/functionannotation.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-07T10:18:20,766   copying build/lib/strucgap/insighttracker.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-07T10:18:20,769   copying build/lib/strucgap/glycosite.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-07T10:18:20,773   copying build/lib/strucgap/preprocess.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-07T10:18:20,776   copying build/lib/strucgap/__init__.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-07T10:18:20,778   copying build/lib/strucgap/glycanstructure.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-07T10:18:20,784   copying build/lib/strucgap/glyconetwork.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-07T10:18:20,788   running install_egg_info
2025-06-07T10:18:20,826   running egg_info
2025-06-07T10:18:20,856   writing strucgap.egg-info/PKG-INFO
2025-06-07T10:18:20,860   writing dependency_links to strucgap.egg-info/dependency_links.txt
2025-06-07T10:18:20,863   writing requirements to strucgap.egg-info/requires.txt
2025-06-07T10:18:20,864   writing top-level names to strucgap.egg-info/top_level.txt
2025-06-07T10:18:20,896   reading manifest file 'strucgap.egg-info/SOURCES.txt'
2025-06-07T10:18:20,902   writing manifest file 'strucgap.egg-info/SOURCES.txt'
2025-06-07T10:18:20,903   Copying strucgap.egg-info to build/bdist.linux-armv7l/wheel/./strucgap-1.0.3-py3.11.egg-info
2025-06-07T10:18:20,913   running install_scripts
2025-06-07T10:18:20,923   creating build/bdist.linux-armv7l/wheel/strucgap-1.0.3.dist-info/WHEEL
2025-06-07T10:18:20,926   creating '/tmp/pip-wheel-s2ho65bn/strucgap-1.0.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-06-07T10:18:20,929   adding 'strucgap/__init__.py'
2025-06-07T10:18:20,959   adding 'strucgap/datavisualization.py'
2025-06-07T10:18:20,969   adding 'strucgap/functionannotation.py'
2025-06-07T10:18:20,976   adding 'strucgap/glycanstructure.py'
2025-06-07T10:18:20,983   adding 'strucgap/glyconetwork.py'
2025-06-07T10:18:20,991   adding 'strucgap/glycopeptidequant.py'
2025-06-07T10:18:20,994   adding 'strucgap/glycosite.py'
2025-06-07T10:18:20,997   adding 'strucgap/insighttracker.py'
2025-06-07T10:18:21,000   adding 'strucgap/preprocess.py'
2025-06-07T10:18:21,002   adding 'strucgap-1.0.3.dist-info/METADATA'
2025-06-07T10:18:21,003   adding 'strucgap-1.0.3.dist-info/WHEEL'
2025-06-07T10:18:21,004   adding 'strucgap-1.0.3.dist-info/top_level.txt'
2025-06-07T10:18:21,005   adding 'strucgap-1.0.3.dist-info/RECORD'
2025-06-07T10:18:21,008   removing build/bdist.linux-armv7l/wheel
2025-06-07T10:18:21,118   Building wheel for strucgap (setup.py): finished with status 'done'
2025-06-07T10:18:21,122   Created wheel for strucgap: filename=strucgap-1.0.3-py3-none-any.whl size=118872 sha256=3a86c403e2e59f166ea5f0a7e14760197aabf21323578464f3afecc83f53fdaa
2025-06-07T10:18:21,123   Stored in directory: /tmp/pip-ephem-wheel-cache-fzcvuxz3/wheels/a9/2e/1b/fa941a89dcfb46ddd7d1732c2f13fb2fee7ea28ea17658c2e8
2025-06-07T10:18:21,134 Successfully built strucgap
2025-06-07T10:18:21,141 Removed build tracker: '/tmp/pip-build-tracker-25fmabiz'