2025-06-08T05:13:28,019 Created temporary directory: /tmp/pip-build-tracker-wrtuwlvz 2025-06-08T05:13:28,020 Initialized build tracking at /tmp/pip-build-tracker-wrtuwlvz 2025-06-08T05:13:28,021 Created build tracker: /tmp/pip-build-tracker-wrtuwlvz 2025-06-08T05:13:28,021 Entered build tracker: /tmp/pip-build-tracker-wrtuwlvz 2025-06-08T05:13:28,022 Created temporary directory: /tmp/pip-wheel-10fbzy7j 2025-06-08T05:13:28,026 Created temporary directory: /tmp/pip-ephem-wheel-cache-fzd47_1n 2025-06-08T05:13:28,076 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-06-08T05:13:28,079 2 location(s) to search for versions of ena-upload-cli: 2025-06-08T05:13:28,079 * https://pypi.org/simple/ena-upload-cli/ 2025-06-08T05:13:28,079 * https://www.piwheels.org/simple/ena-upload-cli/ 2025-06-08T05:13:28,080 Fetching project page and analyzing links: https://pypi.org/simple/ena-upload-cli/ 2025-06-08T05:13:28,080 Getting page https://pypi.org/simple/ena-upload-cli/ 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https://files.pythonhosted.org/packages/4c/90/78e29b4036166c16fbc38d56e074a42faa20aee65b9bce871d5b4dfc1712/ena_upload_cli-0.5.3-py3-none-any.whl (from https://pypi.org/simple/ena-upload-cli/) (requires-python:>=3.5) 2025-06-08T05:13:28,434 Found link https://files.pythonhosted.org/packages/8d/00/62d40ac9c2aebd3dd1db4e10e11ab7fd512fa4d66786b9e4e1ac53eac4a9/ena-upload-cli-0.6.0.tar.gz (from https://pypi.org/simple/ena-upload-cli/) (requires-python:>=3.5), version: 0.6.0 2025-06-08T05:13:28,434 Skipping link: No binaries permitted for ena-upload-cli: https://files.pythonhosted.org/packages/06/14/e1cd12cc7995697f9b9a3bc56909267fca92849cd9eea821c9dd591d2bfe/ena_upload_cli-0.6.0-py3-none-any.whl (from https://pypi.org/simple/ena-upload-cli/) (requires-python:>=3.5) 2025-06-08T05:13:28,435 Found link https://files.pythonhosted.org/packages/e1/66/943ec3f97ad07a48dd740b09601bbf09cb8a5af71864a74aff51642ebd27/ena-upload-cli-0.6.1.tar.gz (from https://pypi.org/simple/ena-upload-cli/) (requires-python:>=3.5), version: 0.6.1 2025-06-08T05:13:28,435 Skipping link: No binaries permitted for ena-upload-cli: https://files.pythonhosted.org/packages/9e/64/7444591cdc261e70165b8f65ebd2296da9899874801ddfbe8c209c1de92e/ena_upload_cli-0.6.1-py3-none-any.whl (from https://pypi.org/simple/ena-upload-cli/) (requires-python:>=3.5) 2025-06-08T05:13:28,436 Found link https://files.pythonhosted.org/packages/7e/06/52f3e1ca53d8d982b08b0bacee0d4ffe97c8bbde612115b049dce8f647de/ena-upload-cli-0.6.2.tar.gz (from https://pypi.org/simple/ena-upload-cli/) (requires-python:>=3.5), version: 0.6.2 2025-06-08T05:13:28,437 Skipping link: No binaries permitted for ena-upload-cli: https://files.pythonhosted.org/packages/17/07/3b21370c5456e60426183d7e855a4579d5f4b4bd3d19f4b09aa7cecf17b5/ena_upload_cli-0.6.2-py3-none-any.whl (from https://pypi.org/simple/ena-upload-cli/) (requires-python:>=3.5) 2025-06-08T05:13:28,437 Found link https://files.pythonhosted.org/packages/39/55/eae52be7c98e3bb737de7daa965b363fc407f713385caeb623b32a757bb2/ena-upload-cli-0.6.3.tar.gz (from https://pypi.org/simple/ena-upload-cli/) (requires-python:>=3.5), version: 0.6.3 2025-06-08T05:13:28,438 Skipping link: No binaries permitted for ena-upload-cli: https://files.pythonhosted.org/packages/fb/96/929015f7e4026cb2085c367983ba1dcd5a9d59ed7494de65378008521145/ena_upload_cli-0.6.3-py3-none-any.whl (from https://pypi.org/simple/ena-upload-cli/) (requires-python:>=3.5) 2025-06-08T05:13:28,438 Found link https://files.pythonhosted.org/packages/6a/f7/eac736b077dba44069b2f5cbc9f7411672ce5ce174509a996bf44b3c2898/ena-upload-cli-0.7.0.tar.gz (from https://pypi.org/simple/ena-upload-cli/) (requires-python:>=3.5), version: 0.7.0 2025-06-08T05:13:28,439 Skipping link: No binaries permitted for ena-upload-cli: https://files.pythonhosted.org/packages/5d/1f/635575a1927ae799260b47b179378ab26e377c56365e6a826a3fbebbed04/ena_upload_cli-0.7.0-py3-none-any.whl (from https://pypi.org/simple/ena-upload-cli/) (requires-python:>=3.5) 2025-06-08T05:13:28,440 Found link https://files.pythonhosted.org/packages/e5/03/501cd7940895e47da3a01cabb4ffcdf4368d10ad40040a60d2fd88d721aa/ena-upload-cli-0.7.1.tar.gz (from https://pypi.org/simple/ena-upload-cli/) (requires-python:>=3.7), version: 0.7.1 2025-06-08T05:13:28,441 Skipping link: No binaries permitted for ena-upload-cli: https://files.pythonhosted.org/packages/77/94/21632b699236a8753c45ae319105574c7d9d256da26a34c4c2aeffcc7d8f/ena_upload_cli-0.7.1-py3-none-any.whl (from https://pypi.org/simple/ena-upload-cli/) (requires-python:>=3.7) 2025-06-08T05:13:28,441 Skipping link: No binaries permitted for ena-upload-cli: https://files.pythonhosted.org/packages/66/53/b6a90406a02842a4af4874598e080d1942c982a82026a9ff1a48068ca36a/ena_upload_cli-0.7.2-py3-none-any.whl (from https://pypi.org/simple/ena-upload-cli/) (requires-python:>=3.7) 2025-06-08T05:13:28,442 Found link https://files.pythonhosted.org/packages/23/87/f7b4436d950bdb74e0f9062a57108c67453ccfa33e6d0756a1ed9e89305d/ena_upload_cli-0.7.2.tar.gz (from https://pypi.org/simple/ena-upload-cli/) (requires-python:>=3.7), version: 0.7.2 2025-06-08T05:13:28,442 Skipping link: No binaries permitted for ena-upload-cli: https://files.pythonhosted.org/packages/d1/dc/37d199cfb311b4fd688f488d3f06bf7551412451d356a654eef089b693da/ena_upload_cli-0.7.3-py3-none-any.whl (from https://pypi.org/simple/ena-upload-cli/) (requires-python:>=3.7) 2025-06-08T05:13:28,443 Found link https://files.pythonhosted.org/packages/b3/84/055f1ce0defd54101ea1ba33b38997fc9e92d1658a4bf4a87d73e4fe3caa/ena_upload_cli-0.7.3.tar.gz (from https://pypi.org/simple/ena-upload-cli/) (requires-python:>=3.7), version: 0.7.3 2025-06-08T05:13:28,443 Skipping link: No binaries permitted for ena-upload-cli: https://files.pythonhosted.org/packages/71/32/2d9f8df49c3cfab3562e2e38f9bfb217c1f9fa24df0088ce7e52dafa1be5/ena_upload_cli-0.7.4-py3-none-any.whl (from https://pypi.org/simple/ena-upload-cli/) (requires-python:>=3.7) 2025-06-08T05:13:28,444 Found link https://files.pythonhosted.org/packages/61/76/07b2786e6eab4a82764e5f8303c27ed46ee6a41a2aaaab6d214827db584c/ena_upload_cli-0.7.4.tar.gz (from https://pypi.org/simple/ena-upload-cli/) (requires-python:>=3.7), version: 0.7.4 2025-06-08T05:13:28,444 Skipping link: No binaries permitted for ena-upload-cli: https://files.pythonhosted.org/packages/ef/f6/d96943fe159f70e397b8a26b49f5d20561cdd4fa2ef6b34268d3089b9698/ena_upload_cli-0.7.5-py3-none-any.whl (from https://pypi.org/simple/ena-upload-cli/) (requires-python:>=3.8) 2025-06-08T05:13:28,445 Found link https://files.pythonhosted.org/packages/64/a7/63f323494ec4c4629d09863cc7578d13d276fc677e0c4e63b4923b2ee31d/ena_upload_cli-0.7.5.tar.gz (from https://pypi.org/simple/ena-upload-cli/) (requires-python:>=3.8), version: 0.7.5 2025-06-08T05:13:28,446 Skipping link: No binaries permitted for ena-upload-cli: https://files.pythonhosted.org/packages/30/c0/eab795e29d13a8663c37daddaf27ff2e306f7028bb8a0cb096369622b28d/ena_upload_cli-0.8.0-py3-none-any.whl (from https://pypi.org/simple/ena-upload-cli/) (requires-python:>=3.8) 2025-06-08T05:13:28,446 Found link https://files.pythonhosted.org/packages/38/9c/c1d6bbef35844816505856105e2235181f93c37288a152404d7f2caead9d/ena_upload_cli-0.8.0.tar.gz (from https://pypi.org/simple/ena-upload-cli/) (requires-python:>=3.8), version: 0.8.0 2025-06-08T05:13:28,447 Skipping link: No binaries permitted for ena-upload-cli: https://files.pythonhosted.org/packages/f7/77/b6ff17a0daac4f577b69d63070be15668097eaeff2cd3cd2d5c6809428df/ena_upload_cli-0.9.0-py3-none-any.whl (from https://pypi.org/simple/ena-upload-cli/) (requires-python:>=3.8) 2025-06-08T05:13:28,447 Found link https://files.pythonhosted.org/packages/20/c2/20fdb23ccf602a318e83d27f0852a5cccb428960420e947b6414bed49dc7/ena_upload_cli-0.9.0.tar.gz (from https://pypi.org/simple/ena-upload-cli/) (requires-python:>=3.8), version: 0.9.0 2025-06-08T05:13:28,448 Fetching project page and analyzing links: https://www.piwheels.org/simple/ena-upload-cli/ 2025-06-08T05:13:28,449 Getting page https://www.piwheels.org/simple/ena-upload-cli/ 2025-06-08T05:13:28,450 Found index url https://www.piwheels.org/simple/ 2025-06-08T05:13:28,611 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/ena-upload-cli/ 2025-06-08T05:13:29,261 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/ena-upload-cli/ 2025-06-08T05:13:30,418 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/ena-upload-cli/ 2025-06-08T05:13:32,636 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/ena-upload-cli/ 2025-06-08T05:13:36,853 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/ena-upload-cli/ 2025-06-08T05:13:37,068 Could not fetch URL https://www.piwheels.org/simple/ena-upload-cli/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/ena-upload-cli/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping 2025-06-08T05:13:37,070 Skipping link: not a file: https://www.piwheels.org/simple/ena-upload-cli/ 2025-06-08T05:13:37,070 Skipping link: not a file: https://pypi.org/simple/ena-upload-cli/ 2025-06-08T05:13:37,092 Given no hashes to check 1 links for project 'ena-upload-cli': discarding no candidates 2025-06-08T05:13:37,093 Collecting ena-upload-cli==0.9.0 2025-06-08T05:13:37,096 Created temporary directory: /tmp/pip-unpack-b_gi8zmw 2025-06-08T05:13:37,317 Downloading ena_upload_cli-0.9.0.tar.gz (132 kB) 2025-06-08T05:13:37,634 Added ena-upload-cli==0.9.0 from https://files.pythonhosted.org/packages/20/c2/20fdb23ccf602a318e83d27f0852a5cccb428960420e947b6414bed49dc7/ena_upload_cli-0.9.0.tar.gz to build tracker '/tmp/pip-build-tracker-wrtuwlvz' 2025-06-08T05:13:37,637 Running setup.py (path:/tmp/pip-wheel-10fbzy7j/ena-upload-cli_0d81951f2e134db797d4ea6765457886/setup.py) egg_info for package ena-upload-cli 2025-06-08T05:13:37,638 Created temporary directory: /tmp/pip-pip-egg-info-1v4aecd6 2025-06-08T05:13:37,639 Preparing metadata (setup.py): started 2025-06-08T05:13:37,640 Running command python setup.py egg_info 2025-06-08T05:13:38,520 running egg_info 2025-06-08T05:13:38,547 creating /tmp/pip-pip-egg-info-1v4aecd6/ena_upload_cli.egg-info 2025-06-08T05:13:38,548 writing /tmp/pip-pip-egg-info-1v4aecd6/ena_upload_cli.egg-info/PKG-INFO 2025-06-08T05:13:38,553 writing dependency_links to /tmp/pip-pip-egg-info-1v4aecd6/ena_upload_cli.egg-info/dependency_links.txt 2025-06-08T05:13:38,555 writing entry points to /tmp/pip-pip-egg-info-1v4aecd6/ena_upload_cli.egg-info/entry_points.txt 2025-06-08T05:13:38,556 writing requirements to /tmp/pip-pip-egg-info-1v4aecd6/ena_upload_cli.egg-info/requires.txt 2025-06-08T05:13:38,558 writing top-level names to /tmp/pip-pip-egg-info-1v4aecd6/ena_upload_cli.egg-info/top_level.txt 2025-06-08T05:13:38,559 writing manifest file '/tmp/pip-pip-egg-info-1v4aecd6/ena_upload_cli.egg-info/SOURCES.txt' 2025-06-08T05:13:38,659 reading manifest file '/tmp/pip-pip-egg-info-1v4aecd6/ena_upload_cli.egg-info/SOURCES.txt' 2025-06-08T05:13:38,661 reading manifest template 'MANIFEST.in' 2025-06-08T05:13:38,662 warning: no files found matching 'LICENSE.txt' 2025-06-08T05:13:38,663 adding license file 'LICENSE' 2025-06-08T05:13:38,668 writing manifest file '/tmp/pip-pip-egg-info-1v4aecd6/ena_upload_cli.egg-info/SOURCES.txt' 2025-06-08T05:13:38,773 Preparing metadata (setup.py): finished with status 'done' 2025-06-08T05:13:38,778 Source in /tmp/pip-wheel-10fbzy7j/ena-upload-cli_0d81951f2e134db797d4ea6765457886 has version 0.9.0, which satisfies requirement ena-upload-cli==0.9.0 from https://files.pythonhosted.org/packages/20/c2/20fdb23ccf602a318e83d27f0852a5cccb428960420e947b6414bed49dc7/ena_upload_cli-0.9.0.tar.gz 2025-06-08T05:13:38,778 Removed ena-upload-cli==0.9.0 from https://files.pythonhosted.org/packages/20/c2/20fdb23ccf602a318e83d27f0852a5cccb428960420e947b6414bed49dc7/ena_upload_cli-0.9.0.tar.gz from build tracker '/tmp/pip-build-tracker-wrtuwlvz' 2025-06-08T05:13:38,788 Created temporary directory: /tmp/pip-unpack-ah2zl55y 2025-06-08T05:13:38,789 Created temporary directory: /tmp/pip-unpack-zdk9lwv9 2025-06-08T05:13:38,789 Building wheels for collected packages: ena-upload-cli 2025-06-08T05:13:38,793 Created temporary directory: /tmp/pip-wheel-rdqpbymz 2025-06-08T05:13:38,794 DEPRECATION: Building 'ena-upload-cli' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'ena-upload-cli'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-06-08T05:13:38,795 Building wheel for ena-upload-cli (setup.py): started 2025-06-08T05:13:38,796 Destination directory: /tmp/pip-wheel-rdqpbymz 2025-06-08T05:13:38,797 Running command python setup.py bdist_wheel 2025-06-08T05:13:39,658 running bdist_wheel 2025-06-08T05:13:39,789 running build 2025-06-08T05:13:39,790 running build_py 2025-06-08T05:13:39,821 creating build/lib/tests 2025-06-08T05:13:39,823 copying tests/__init__.py -> build/lib/tests 2025-06-08T05:13:39,825 copying tests/test_ena_objects.py -> build/lib/tests 2025-06-08T05:13:39,828 creating build/lib/ena_upload 2025-06-08T05:13:39,830 copying ena_upload/check_remote.py -> build/lib/ena_upload 2025-06-08T05:13:39,832 copying ena_upload/_version.py -> build/lib/ena_upload 2025-06-08T05:13:39,834 copying ena_upload/__init__.py -> build/lib/ena_upload 2025-06-08T05:13:39,836 copying ena_upload/ena_upload.py -> build/lib/ena_upload 2025-06-08T05:13:39,840 creating build/lib/ena_upload/json_parsing 2025-06-08T05:13:39,842 copying ena_upload/json_parsing/ena_sample.py -> build/lib/ena_upload/json_parsing 2025-06-08T05:13:39,845 copying ena_upload/json_parsing/ena_submission.py -> build/lib/ena_upload/json_parsing 2025-06-08T05:13:39,847 copying ena_upload/json_parsing/ena_experiment.py -> build/lib/ena_upload/json_parsing 2025-06-08T05:13:39,850 copying ena_upload/json_parsing/characteristic.py -> build/lib/ena_upload/json_parsing 2025-06-08T05:13:39,852 copying ena_upload/json_parsing/ena_study.py -> build/lib/ena_upload/json_parsing 2025-06-08T05:13:39,855 copying ena_upload/json_parsing/__init__.py -> build/lib/ena_upload/json_parsing 2025-06-08T05:13:39,857 copying ena_upload/json_parsing/ena_std_lib.py -> build/lib/ena_upload/json_parsing 2025-06-08T05:13:39,859 copying ena_upload/json_parsing/other_material.py -> build/lib/ena_upload/json_parsing 2025-06-08T05:13:39,861 copying ena_upload/json_parsing/ena_run.py -> build/lib/ena_upload/json_parsing 2025-06-08T05:13:39,873 creating build/lib/ena_upload/templates 2025-06-08T05:13:39,874 copying ena_upload/templates/ENA_template_samples_ERC000039.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:39,878 copying ena_upload/templates/ENA_template_samples_ERC000043.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:39,881 copying ena_upload/templates/ENA_template_samples_ERC000029.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:39,884 copying ena_upload/templates/ENA_template_samples_ERC000021.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:39,887 copying ena_upload/templates/ENA_template_samples_ERC000041.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:39,890 copying ena_upload/templates/ENA_template_samples_ERC000037.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:39,893 copying ena_upload/templates/ENA_template_samples_ERC000048.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:39,897 copying ena_upload/templates/ENA_template_LIBRARY_SOURCE.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:39,899 copying ena_upload/templates/ENA_template_samples_ERC000033.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:39,903 copying ena_upload/templates/ENA_template_samples_ERC000027.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:39,907 copying ena_upload/templates/ENA_template_READ_TYPE.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:39,910 copying ena_upload/templates/ENA_template_studies.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:39,913 copying ena_upload/templates/ENA_template_samples_ERC000018.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:39,918 copying ena_upload/templates/ENA_template_samples_ERC000044.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:39,922 copying ena_upload/templates/ENA_template_samples_ERC000056.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:39,927 copying ena_upload/templates/ENA_template_samples_ERC000058.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:39,931 copying ena_upload/templates/ENA_template_FILE.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:39,934 copying ena_upload/templates/ENA_template_samples_ERC000013.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:39,938 copying ena_upload/templates/ENA_template_samples_ERC000047.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:39,942 copying ena_upload/templates/ENA_template_samples_ERC000025.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:39,945 copying ena_upload/templates/ENA_template_samples_ERC000012.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:39,949 copying ena_upload/templates/ENA_template_samples_ERC000011.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:39,953 copying ena_upload/templates/ENA_template_experiments.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:39,956 copying ena_upload/templates/ENA_template_LIBRARY_SELECTION.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:39,959 copying ena_upload/templates/ENA_template_submission.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:39,961 copying ena_upload/templates/ENA_template_samples_ERC000057.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:39,965 copying ena_upload/templates/ENA_template_samples_ERC000028.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:39,969 copying ena_upload/templates/ENA_template_samples_ERC000014.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:39,972 copying ena_upload/templates/ENA_template_samples_ERC000022.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:39,976 copying ena_upload/templates/ENA_template_FASTQFILE.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:39,979 copying ena_upload/templates/ENA_template_samples_ERC000017.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:39,983 copying ena_upload/templates/ENA_template_samples_ERC000020.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:39,987 copying ena_upload/templates/ENA_template_samples_ERC000053.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:39,990 copying ena_upload/templates/ENA_template_samples_ERC000035.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:39,994 copying ena_upload/templates/ENA_template_samples_ERC000038.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:39,997 copying ena_upload/templates/ENA_template_samples_ERC000052.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:40,000 copying ena_upload/templates/ENA_template_samples_ERC000031.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:40,004 copying ena_upload/templates/ENA_template_samples_ERC000055.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:40,008 copying ena_upload/templates/ENA_template_samples_ERC000034.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:40,010 copying ena_upload/templates/ENA_template_samples_ERC000036.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:40,013 copying ena_upload/templates/ENA_template_runs.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:40,015 copying ena_upload/templates/ENA_template_samples_ERC000032.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:40,018 copying ena_upload/templates/ENA_template_samples_ERC000024.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:40,022 copying ena_upload/templates/ENA_template_samples_ERC000023.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:40,025 copying ena_upload/templates/ENA_template_samples_ERC000045.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:40,028 copying ena_upload/templates/ENA_template_samples_ERC000016.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:40,031 copying ena_upload/templates/ENA_template_samples_ERC000019.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:40,035 copying ena_upload/templates/ENA_template_PLATFORM.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:40,038 copying ena_upload/templates/ENA_template_LIBRARY_STRATEGY.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:40,040 copying ena_upload/templates/ENA_template_samples_ERC000050.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:40,043 copying ena_upload/templates/ENA_template_samples_ERC000030.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:40,046 copying ena_upload/templates/ENA_template_samples_ERC000040.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:40,049 copying ena_upload/templates/ENA_template_samples_ERC000015.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:40,052 copying ena_upload/templates/ENA_template_samples_ERC000051.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:40,055 copying ena_upload/templates/ENA_template_samples_ERC000049.xml -> build/lib/ena_upload/templates 2025-06-08T05:13:40,058 copying ena_upload/templates/ENA.project.xsd -> build/lib/ena_upload/templates 2025-06-08T05:13:40,061 copying ena_upload/templates/SRA.sample.xsd -> build/lib/ena_upload/templates 2025-06-08T05:13:40,063 copying ena_upload/templates/SRA.experiment.xsd -> build/lib/ena_upload/templates 2025-06-08T05:13:40,067 copying ena_upload/templates/SRA.run.xsd -> build/lib/ena_upload/templates 2025-06-08T05:13:40,070 copying ena_upload/templates/SRA.submission.xsd -> build/lib/ena_upload/templates 2025-06-08T05:13:40,073 copying ena_upload/templates/SRA.common.xsd -> build/lib/ena_upload/templates 2025-06-08T05:13:40,077 copying ena_upload/templates/SRA.study.xsd -> build/lib/ena_upload/templates 2025-06-08T05:13:40,080 creating build/lib/ena_upload/json_parsing/json_schemas 2025-06-08T05:13:40,081 copying ena_upload/json_parsing/json_schemas/process_schema.json -> build/lib/ena_upload/json_parsing/json_schemas 2025-06-08T05:13:40,084 copying ena_upload/json_parsing/json_schemas/source_schema.json -> build/lib/ena_upload/json_parsing/json_schemas 2025-06-08T05:13:40,086 copying ena_upload/json_parsing/json_schemas/protocol_schema.json -> build/lib/ena_upload/json_parsing/json_schemas 2025-06-08T05:13:40,090 copying ena_upload/json_parsing/json_schemas/person_schema.json -> build/lib/ena_upload/json_parsing/json_schemas 2025-06-08T05:13:40,092 copying ena_upload/json_parsing/json_schemas/comment_schema.json -> build/lib/ena_upload/json_parsing/json_schemas 2025-06-08T05:13:40,094 copying ena_upload/json_parsing/json_schemas/organization_schema.json -> build/lib/ena_upload/json_parsing/json_schemas 2025-06-08T05:13:40,096 copying ena_upload/json_parsing/json_schemas/sample_schema.json -> build/lib/ena_upload/json_parsing/json_schemas 2025-06-08T05:13:40,098 copying ena_upload/json_parsing/json_schemas/material_attribute_schema.json -> build/lib/ena_upload/json_parsing/json_schemas 2025-06-08T05:13:40,101 copying ena_upload/json_parsing/json_schemas/material_attribute_value_schema.json -> build/lib/ena_upload/json_parsing/json_schemas 2025-06-08T05:13:40,104 copying ena_upload/json_parsing/json_schemas/protocol_parameter_schema.json -> build/lib/ena_upload/json_parsing/json_schemas 2025-06-08T05:13:40,107 copying ena_upload/json_parsing/json_schemas/study_schema.json -> build/lib/ena_upload/json_parsing/json_schemas 2025-06-08T05:13:40,109 copying ena_upload/json_parsing/json_schemas/ontology_source_reference_schema.json -> build/lib/ena_upload/json_parsing/json_schemas 2025-06-08T05:13:40,112 copying ena_upload/json_parsing/json_schemas/ontology_annotation_schema.json -> build/lib/ena_upload/json_parsing/json_schemas 2025-06-08T05:13:40,115 copying ena_upload/json_parsing/json_schemas/process_parameter_value_schema.json -> build/lib/ena_upload/json_parsing/json_schemas 2025-06-08T05:13:40,118 copying ena_upload/json_parsing/json_schemas/investigation_schema.json -> build/lib/ena_upload/json_parsing/json_schemas 2025-06-08T05:13:40,120 copying ena_upload/json_parsing/json_schemas/factor_value_schema.json -> build/lib/ena_upload/json_parsing/json_schemas 2025-06-08T05:13:40,123 copying ena_upload/json_parsing/json_schemas/assay_schema.json -> build/lib/ena_upload/json_parsing/json_schemas 2025-06-08T05:13:40,126 copying ena_upload/json_parsing/json_schemas/factor_schema.json -> build/lib/ena_upload/json_parsing/json_schemas 2025-06-08T05:13:40,129 copying ena_upload/json_parsing/json_schemas/publication_schema.json -> build/lib/ena_upload/json_parsing/json_schemas 2025-06-08T05:13:40,132 copying ena_upload/json_parsing/json_schemas/data_schema.json -> build/lib/ena_upload/json_parsing/json_schemas 2025-06-08T05:13:40,134 copying ena_upload/json_parsing/json_schemas/material_schema.json -> build/lib/ena_upload/json_parsing/json_schemas 2025-06-08T05:13:40,166 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-06-08T05:13:40,166 !! 2025-06-08T05:13:40,168 ******************************************************************************** 2025-06-08T05:13:40,168 Please avoid running ``setup.py`` directly. 2025-06-08T05:13:40,169 Instead, use pypa/build, pypa/installer or other 2025-06-08T05:13:40,169 standards-based tools. 2025-06-08T05:13:40,170 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-06-08T05:13:40,171 or your builds will no longer be supported. 2025-06-08T05:13:40,172 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-06-08T05:13:40,173 ******************************************************************************** 2025-06-08T05:13:40,174 !! 2025-06-08T05:13:40,174 self.initialize_options() 2025-06-08T05:13:40,193 installing to build/bdist.linux-armv7l/wheel 2025-06-08T05:13:40,194 running install 2025-06-08T05:13:40,218 running install_lib 2025-06-08T05:13:40,245 creating build/bdist.linux-armv7l/wheel 2025-06-08T05:13:40,247 creating build/bdist.linux-armv7l/wheel/tests 2025-06-08T05:13:40,248 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./tests 2025-06-08T05:13:40,250 copying build/lib/tests/test_ena_objects.py -> build/bdist.linux-armv7l/wheel/./tests 2025-06-08T05:13:40,252 creating build/bdist.linux-armv7l/wheel/ena_upload 2025-06-08T05:13:40,253 copying build/lib/ena_upload/check_remote.py -> build/bdist.linux-armv7l/wheel/./ena_upload 2025-06-08T05:13:40,256 creating build/bdist.linux-armv7l/wheel/ena_upload/json_parsing 2025-06-08T05:13:40,257 copying build/lib/ena_upload/json_parsing/ena_sample.py -> build/bdist.linux-armv7l/wheel/./ena_upload/json_parsing 2025-06-08T05:13:40,259 copying build/lib/ena_upload/json_parsing/ena_submission.py -> build/bdist.linux-armv7l/wheel/./ena_upload/json_parsing 2025-06-08T05:13:40,261 copying build/lib/ena_upload/json_parsing/ena_experiment.py -> build/bdist.linux-armv7l/wheel/./ena_upload/json_parsing 2025-06-08T05:13:40,264 copying build/lib/ena_upload/json_parsing/characteristic.py -> build/bdist.linux-armv7l/wheel/./ena_upload/json_parsing 2025-06-08T05:13:40,266 copying build/lib/ena_upload/json_parsing/ena_study.py -> build/bdist.linux-armv7l/wheel/./ena_upload/json_parsing 2025-06-08T05:13:40,268 copying build/lib/ena_upload/json_parsing/__init__.py -> build/bdist.linux-armv7l/wheel/./ena_upload/json_parsing 2025-06-08T05:13:40,269 copying build/lib/ena_upload/json_parsing/ena_std_lib.py -> build/bdist.linux-armv7l/wheel/./ena_upload/json_parsing 2025-06-08T05:13:40,271 copying build/lib/ena_upload/json_parsing/other_material.py -> build/bdist.linux-armv7l/wheel/./ena_upload/json_parsing 2025-06-08T05:13:40,273 copying build/lib/ena_upload/json_parsing/ena_run.py -> build/bdist.linux-armv7l/wheel/./ena_upload/json_parsing 2025-06-08T05:13:40,276 creating build/bdist.linux-armv7l/wheel/ena_upload/json_parsing/json_schemas 2025-06-08T05:13:40,277 copying build/lib/ena_upload/json_parsing/json_schemas/process_schema.json -> build/bdist.linux-armv7l/wheel/./ena_upload/json_parsing/json_schemas 2025-06-08T05:13:40,279 copying build/lib/ena_upload/json_parsing/json_schemas/source_schema.json -> build/bdist.linux-armv7l/wheel/./ena_upload/json_parsing/json_schemas 2025-06-08T05:13:40,281 copying build/lib/ena_upload/json_parsing/json_schemas/protocol_schema.json -> build/bdist.linux-armv7l/wheel/./ena_upload/json_parsing/json_schemas 2025-06-08T05:13:40,283 copying build/lib/ena_upload/json_parsing/json_schemas/person_schema.json -> build/bdist.linux-armv7l/wheel/./ena_upload/json_parsing/json_schemas 2025-06-08T05:13:40,284 copying build/lib/ena_upload/json_parsing/json_schemas/comment_schema.json -> build/bdist.linux-armv7l/wheel/./ena_upload/json_parsing/json_schemas 2025-06-08T05:13:40,286 copying build/lib/ena_upload/json_parsing/json_schemas/organization_schema.json -> build/bdist.linux-armv7l/wheel/./ena_upload/json_parsing/json_schemas 2025-06-08T05:13:40,288 copying build/lib/ena_upload/json_parsing/json_schemas/sample_schema.json -> build/bdist.linux-armv7l/wheel/./ena_upload/json_parsing/json_schemas 2025-06-08T05:13:40,290 copying build/lib/ena_upload/json_parsing/json_schemas/material_attribute_schema.json -> build/bdist.linux-armv7l/wheel/./ena_upload/json_parsing/json_schemas 2025-06-08T05:13:40,292 copying build/lib/ena_upload/json_parsing/json_schemas/material_attribute_value_schema.json -> build/bdist.linux-armv7l/wheel/./ena_upload/json_parsing/json_schemas 2025-06-08T05:13:40,294 copying build/lib/ena_upload/json_parsing/json_schemas/protocol_parameter_schema.json -> build/bdist.linux-armv7l/wheel/./ena_upload/json_parsing/json_schemas 2025-06-08T05:13:40,296 copying build/lib/ena_upload/json_parsing/json_schemas/study_schema.json -> build/bdist.linux-armv7l/wheel/./ena_upload/json_parsing/json_schemas 2025-06-08T05:13:40,299 copying build/lib/ena_upload/json_parsing/json_schemas/ontology_source_reference_schema.json -> build/bdist.linux-armv7l/wheel/./ena_upload/json_parsing/json_schemas 2025-06-08T05:13:40,300 copying build/lib/ena_upload/json_parsing/json_schemas/ontology_annotation_schema.json -> build/bdist.linux-armv7l/wheel/./ena_upload/json_parsing/json_schemas 2025-06-08T05:13:40,302 copying build/lib/ena_upload/json_parsing/json_schemas/process_parameter_value_schema.json -> build/bdist.linux-armv7l/wheel/./ena_upload/json_parsing/json_schemas 2025-06-08T05:13:40,304 copying build/lib/ena_upload/json_parsing/json_schemas/investigation_schema.json -> build/bdist.linux-armv7l/wheel/./ena_upload/json_parsing/json_schemas 2025-06-08T05:13:40,306 copying build/lib/ena_upload/json_parsing/json_schemas/factor_value_schema.json -> build/bdist.linux-armv7l/wheel/./ena_upload/json_parsing/json_schemas 2025-06-08T05:13:40,308 copying build/lib/ena_upload/json_parsing/json_schemas/assay_schema.json -> build/bdist.linux-armv7l/wheel/./ena_upload/json_parsing/json_schemas 2025-06-08T05:13:40,310 copying build/lib/ena_upload/json_parsing/json_schemas/factor_schema.json -> build/bdist.linux-armv7l/wheel/./ena_upload/json_parsing/json_schemas 2025-06-08T05:13:40,311 copying build/lib/ena_upload/json_parsing/json_schemas/publication_schema.json -> build/bdist.linux-armv7l/wheel/./ena_upload/json_parsing/json_schemas 2025-06-08T05:13:40,313 copying build/lib/ena_upload/json_parsing/json_schemas/data_schema.json -> build/bdist.linux-armv7l/wheel/./ena_upload/json_parsing/json_schemas 2025-06-08T05:13:40,315 copying build/lib/ena_upload/json_parsing/json_schemas/material_schema.json -> build/bdist.linux-armv7l/wheel/./ena_upload/json_parsing/json_schemas 2025-06-08T05:13:40,316 copying build/lib/ena_upload/_version.py -> build/bdist.linux-armv7l/wheel/./ena_upload 2025-06-08T05:13:40,318 copying build/lib/ena_upload/__init__.py -> build/bdist.linux-armv7l/wheel/./ena_upload 2025-06-08T05:13:40,321 creating build/bdist.linux-armv7l/wheel/ena_upload/templates 2025-06-08T05:13:40,322 copying build/lib/ena_upload/templates/ENA_template_samples_ERC000039.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,324 copying build/lib/ena_upload/templates/ENA.project.xsd -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,327 copying build/lib/ena_upload/templates/SRA.sample.xsd -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,329 copying build/lib/ena_upload/templates/ENA_template_samples_ERC000043.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,331 copying build/lib/ena_upload/templates/ENA_template_samples_ERC000029.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,333 copying build/lib/ena_upload/templates/ENA_template_samples_ERC000021.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,336 copying build/lib/ena_upload/templates/ENA_template_samples_ERC000041.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,338 copying build/lib/ena_upload/templates/ENA_template_samples_ERC000037.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,341 copying build/lib/ena_upload/templates/ENA_template_samples_ERC000048.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,343 copying build/lib/ena_upload/templates/ENA_template_LIBRARY_SOURCE.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,345 copying build/lib/ena_upload/templates/ENA_template_samples_ERC000033.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,347 copying build/lib/ena_upload/templates/ENA_template_samples_ERC000027.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,350 copying build/lib/ena_upload/templates/ENA_template_READ_TYPE.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,352 copying build/lib/ena_upload/templates/ENA_template_studies.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,354 copying build/lib/ena_upload/templates/ENA_template_samples_ERC000018.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,356 copying build/lib/ena_upload/templates/ENA_template_samples_ERC000044.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,359 copying build/lib/ena_upload/templates/ENA_template_samples_ERC000056.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,362 copying build/lib/ena_upload/templates/ENA_template_samples_ERC000058.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,365 copying build/lib/ena_upload/templates/ENA_template_FILE.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,367 copying build/lib/ena_upload/templates/ENA_template_samples_ERC000013.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,369 copying build/lib/ena_upload/templates/ENA_template_samples_ERC000047.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,372 copying build/lib/ena_upload/templates/ENA_template_samples_ERC000025.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,374 copying build/lib/ena_upload/templates/ENA_template_samples_ERC000012.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,377 copying build/lib/ena_upload/templates/ENA_template_samples_ERC000011.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,379 copying build/lib/ena_upload/templates/ENA_template_experiments.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,381 copying build/lib/ena_upload/templates/SRA.experiment.xsd -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,384 copying build/lib/ena_upload/templates/ENA_template_LIBRARY_SELECTION.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,386 copying build/lib/ena_upload/templates/ENA_template_submission.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,388 copying build/lib/ena_upload/templates/ENA_template_samples_ERC000057.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,391 copying build/lib/ena_upload/templates/ENA_template_samples_ERC000028.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,393 copying build/lib/ena_upload/templates/ENA_template_samples_ERC000014.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,395 copying build/lib/ena_upload/templates/ENA_template_samples_ERC000022.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,398 copying build/lib/ena_upload/templates/ENA_template_FASTQFILE.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,400 copying build/lib/ena_upload/templates/ENA_template_samples_ERC000017.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,403 copying build/lib/ena_upload/templates/ENA_template_samples_ERC000020.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,405 copying build/lib/ena_upload/templates/ENA_template_samples_ERC000053.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,408 copying build/lib/ena_upload/templates/ENA_template_samples_ERC000035.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,410 copying build/lib/ena_upload/templates/ENA_template_samples_ERC000038.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,413 copying build/lib/ena_upload/templates/ENA_template_samples_ERC000052.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,415 copying build/lib/ena_upload/templates/ENA_template_samples_ERC000031.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,419 copying build/lib/ena_upload/templates/ENA_template_samples_ERC000055.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,422 copying build/lib/ena_upload/templates/ENA_template_samples_ERC000034.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,424 copying build/lib/ena_upload/templates/ENA_template_samples_ERC000036.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,427 copying build/lib/ena_upload/templates/ENA_template_runs.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,429 copying build/lib/ena_upload/templates/ENA_template_samples_ERC000032.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,432 copying build/lib/ena_upload/templates/ENA_template_samples_ERC000024.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,436 copying build/lib/ena_upload/templates/ENA_template_samples_ERC000023.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,439 copying build/lib/ena_upload/templates/ENA_template_samples_ERC000045.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,441 copying build/lib/ena_upload/templates/SRA.run.xsd -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,445 copying build/lib/ena_upload/templates/SRA.submission.xsd -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,448 copying build/lib/ena_upload/templates/ENA_template_samples_ERC000016.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,451 copying build/lib/ena_upload/templates/SRA.common.xsd -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,455 copying build/lib/ena_upload/templates/ENA_template_samples_ERC000019.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,458 copying build/lib/ena_upload/templates/ENA_template_PLATFORM.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,461 copying build/lib/ena_upload/templates/ENA_template_LIBRARY_STRATEGY.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,463 copying build/lib/ena_upload/templates/SRA.study.xsd -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,466 copying build/lib/ena_upload/templates/ENA_template_samples_ERC000050.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,469 copying build/lib/ena_upload/templates/ENA_template_samples_ERC000030.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,471 copying build/lib/ena_upload/templates/ENA_template_samples_ERC000040.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,474 copying build/lib/ena_upload/templates/ENA_template_samples_ERC000015.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,477 copying build/lib/ena_upload/templates/ENA_template_samples_ERC000051.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,479 copying build/lib/ena_upload/templates/ENA_template_samples_ERC000049.xml -> build/bdist.linux-armv7l/wheel/./ena_upload/templates 2025-06-08T05:13:40,482 copying build/lib/ena_upload/ena_upload.py -> build/bdist.linux-armv7l/wheel/./ena_upload 2025-06-08T05:13:40,486 running install_egg_info 2025-06-08T05:13:40,519 running egg_info 2025-06-08T05:13:40,548 writing ena_upload_cli.egg-info/PKG-INFO 2025-06-08T05:13:40,553 writing dependency_links to ena_upload_cli.egg-info/dependency_links.txt 2025-06-08T05:13:40,554 writing entry points to ena_upload_cli.egg-info/entry_points.txt 2025-06-08T05:13:40,556 writing requirements to ena_upload_cli.egg-info/requires.txt 2025-06-08T05:13:40,558 writing top-level names to ena_upload_cli.egg-info/top_level.txt 2025-06-08T05:13:40,598 reading manifest file 'ena_upload_cli.egg-info/SOURCES.txt' 2025-06-08T05:13:40,606 reading manifest template 'MANIFEST.in' 2025-06-08T05:13:40,607 warning: no files found matching 'LICENSE.txt' 2025-06-08T05:13:40,608 adding license file 'LICENSE' 2025-06-08T05:13:40,615 writing manifest file 'ena_upload_cli.egg-info/SOURCES.txt' 2025-06-08T05:13:40,618 Copying ena_upload_cli.egg-info to build/bdist.linux-armv7l/wheel/./ena_upload_cli-0.9.0-py3.11.egg-info 2025-06-08T05:13:40,633 running install_scripts 2025-06-08T05:13:40,649 creating build/bdist.linux-armv7l/wheel/ena_upload_cli-0.9.0.dist-info/WHEEL 2025-06-08T05:13:40,652 creating '/tmp/pip-wheel-rdqpbymz/ena_upload_cli-0.9.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-06-08T05:13:40,655 adding 'ena_upload/__init__.py' 2025-06-08T05:13:40,657 adding 'ena_upload/_version.py' 2025-06-08T05:13:40,658 adding 'ena_upload/check_remote.py' 2025-06-08T05:13:40,664 adding 'ena_upload/ena_upload.py' 2025-06-08T05:13:40,666 adding 'ena_upload/json_parsing/__init__.py' 2025-06-08T05:13:40,668 adding 'ena_upload/json_parsing/characteristic.py' 2025-06-08T05:13:40,670 adding 'ena_upload/json_parsing/ena_experiment.py' 2025-06-08T05:13:40,673 adding 'ena_upload/json_parsing/ena_run.py' 2025-06-08T05:13:40,675 adding 'ena_upload/json_parsing/ena_sample.py' 2025-06-08T05:13:40,676 adding 'ena_upload/json_parsing/ena_std_lib.py' 2025-06-08T05:13:40,678 adding 'ena_upload/json_parsing/ena_study.py' 2025-06-08T05:13:40,680 adding 'ena_upload/json_parsing/ena_submission.py' 2025-06-08T05:13:40,682 adding 'ena_upload/json_parsing/other_material.py' 2025-06-08T05:13:40,684 adding 'ena_upload/json_parsing/json_schemas/assay_schema.json' 2025-06-08T05:13:40,686 adding 'ena_upload/json_parsing/json_schemas/comment_schema.json' 2025-06-08T05:13:40,687 adding 'ena_upload/json_parsing/json_schemas/data_schema.json' 2025-06-08T05:13:40,689 adding 'ena_upload/json_parsing/json_schemas/factor_schema.json' 2025-06-08T05:13:40,690 adding 'ena_upload/json_parsing/json_schemas/factor_value_schema.json' 2025-06-08T05:13:40,692 adding 'ena_upload/json_parsing/json_schemas/investigation_schema.json' 2025-06-08T05:13:40,694 adding 'ena_upload/json_parsing/json_schemas/material_attribute_schema.json' 2025-06-08T05:13:40,695 adding 'ena_upload/json_parsing/json_schemas/material_attribute_value_schema.json' 2025-06-08T05:13:40,697 adding 'ena_upload/json_parsing/json_schemas/material_schema.json' 2025-06-08T05:13:40,698 adding 'ena_upload/json_parsing/json_schemas/ontology_annotation_schema.json' 2025-06-08T05:13:40,700 adding 'ena_upload/json_parsing/json_schemas/ontology_source_reference_schema.json' 2025-06-08T05:13:40,702 adding 'ena_upload/json_parsing/json_schemas/organization_schema.json' 2025-06-08T05:13:40,704 adding 'ena_upload/json_parsing/json_schemas/person_schema.json' 2025-06-08T05:13:40,706 adding 'ena_upload/json_parsing/json_schemas/process_parameter_value_schema.json' 2025-06-08T05:13:40,709 adding 'ena_upload/json_parsing/json_schemas/process_schema.json' 2025-06-08T05:13:40,711 adding 'ena_upload/json_parsing/json_schemas/protocol_parameter_schema.json' 2025-06-08T05:13:40,713 adding 'ena_upload/json_parsing/json_schemas/protocol_schema.json' 2025-06-08T05:13:40,715 adding 'ena_upload/json_parsing/json_schemas/publication_schema.json' 2025-06-08T05:13:40,717 adding 'ena_upload/json_parsing/json_schemas/sample_schema.json' 2025-06-08T05:13:40,719 adding 'ena_upload/json_parsing/json_schemas/source_schema.json' 2025-06-08T05:13:40,721 adding 'ena_upload/json_parsing/json_schemas/study_schema.json' 2025-06-08T05:13:40,725 adding 'ena_upload/templates/ENA.project.xsd' 2025-06-08T05:13:40,726 adding 'ena_upload/templates/ENA_template_FASTQFILE.xml' 2025-06-08T05:13:40,728 adding 'ena_upload/templates/ENA_template_FILE.xml' 2025-06-08T05:13:40,730 adding 'ena_upload/templates/ENA_template_LIBRARY_SELECTION.xml' 2025-06-08T05:13:40,731 adding 'ena_upload/templates/ENA_template_LIBRARY_SOURCE.xml' 2025-06-08T05:13:40,733 adding 'ena_upload/templates/ENA_template_LIBRARY_STRATEGY.xml' 2025-06-08T05:13:40,735 adding 'ena_upload/templates/ENA_template_PLATFORM.xml' 2025-06-08T05:13:40,737 adding 'ena_upload/templates/ENA_template_READ_TYPE.xml' 2025-06-08T05:13:40,739 adding 'ena_upload/templates/ENA_template_experiments.xml' 2025-06-08T05:13:40,740 adding 'ena_upload/templates/ENA_template_runs.xml' 2025-06-08T05:13:40,742 adding 'ena_upload/templates/ENA_template_samples_ERC000011.xml' 2025-06-08T05:13:40,745 adding 'ena_upload/templates/ENA_template_samples_ERC000012.xml' 2025-06-08T05:13:40,748 adding 'ena_upload/templates/ENA_template_samples_ERC000013.xml' 2025-06-08T05:13:40,752 adding 'ena_upload/templates/ENA_template_samples_ERC000014.xml' 2025-06-08T05:13:40,755 adding 'ena_upload/templates/ENA_template_samples_ERC000015.xml' 2025-06-08T05:13:40,757 adding 'ena_upload/templates/ENA_template_samples_ERC000016.xml' 2025-06-08T05:13:40,760 adding 'ena_upload/templates/ENA_template_samples_ERC000017.xml' 2025-06-08T05:13:40,763 adding 'ena_upload/templates/ENA_template_samples_ERC000018.xml' 2025-06-08T05:13:40,767 adding 'ena_upload/templates/ENA_template_samples_ERC000019.xml' 2025-06-08T05:13:40,770 adding 'ena_upload/templates/ENA_template_samples_ERC000020.xml' 2025-06-08T05:13:40,774 adding 'ena_upload/templates/ENA_template_samples_ERC000021.xml' 2025-06-08T05:13:40,777 adding 'ena_upload/templates/ENA_template_samples_ERC000022.xml' 2025-06-08T05:13:40,780 adding 'ena_upload/templates/ENA_template_samples_ERC000023.xml' 2025-06-08T05:13:40,784 adding 'ena_upload/templates/ENA_template_samples_ERC000024.xml' 2025-06-08T05:13:40,787 adding 'ena_upload/templates/ENA_template_samples_ERC000025.xml' 2025-06-08T05:13:40,791 adding 'ena_upload/templates/ENA_template_samples_ERC000027.xml' 2025-06-08T05:13:40,793 adding 'ena_upload/templates/ENA_template_samples_ERC000028.xml' 2025-06-08T05:13:40,795 adding 'ena_upload/templates/ENA_template_samples_ERC000029.xml' 2025-06-08T05:13:40,797 adding 'ena_upload/templates/ENA_template_samples_ERC000030.xml' 2025-06-08T05:13:40,802 adding 'ena_upload/templates/ENA_template_samples_ERC000031.xml' 2025-06-08T05:13:40,805 adding 'ena_upload/templates/ENA_template_samples_ERC000032.xml' 2025-06-08T05:13:40,806 adding 'ena_upload/templates/ENA_template_samples_ERC000033.xml' 2025-06-08T05:13:40,808 adding 'ena_upload/templates/ENA_template_samples_ERC000034.xml' 2025-06-08T05:13:40,809 adding 'ena_upload/templates/ENA_template_samples_ERC000035.xml' 2025-06-08T05:13:40,810 adding 'ena_upload/templates/ENA_template_samples_ERC000036.xml' 2025-06-08T05:13:40,813 adding 'ena_upload/templates/ENA_template_samples_ERC000037.xml' 2025-06-08T05:13:40,814 adding 'ena_upload/templates/ENA_template_samples_ERC000038.xml' 2025-06-08T05:13:40,816 adding 'ena_upload/templates/ENA_template_samples_ERC000039.xml' 2025-06-08T05:13:40,817 adding 'ena_upload/templates/ENA_template_samples_ERC000040.xml' 2025-06-08T05:13:40,819 adding 'ena_upload/templates/ENA_template_samples_ERC000041.xml' 2025-06-08T05:13:40,820 adding 'ena_upload/templates/ENA_template_samples_ERC000043.xml' 2025-06-08T05:13:40,822 adding 'ena_upload/templates/ENA_template_samples_ERC000044.xml' 2025-06-08T05:13:40,823 adding 'ena_upload/templates/ENA_template_samples_ERC000045.xml' 2025-06-08T05:13:40,825 adding 'ena_upload/templates/ENA_template_samples_ERC000047.xml' 2025-06-08T05:13:40,827 adding 'ena_upload/templates/ENA_template_samples_ERC000048.xml' 2025-06-08T05:13:40,829 adding 'ena_upload/templates/ENA_template_samples_ERC000049.xml' 2025-06-08T05:13:40,831 adding 'ena_upload/templates/ENA_template_samples_ERC000050.xml' 2025-06-08T05:13:40,833 adding 'ena_upload/templates/ENA_template_samples_ERC000051.xml' 2025-06-08T05:13:40,834 adding 'ena_upload/templates/ENA_template_samples_ERC000052.xml' 2025-06-08T05:13:40,836 adding 'ena_upload/templates/ENA_template_samples_ERC000053.xml' 2025-06-08T05:13:40,839 adding 'ena_upload/templates/ENA_template_samples_ERC000055.xml' 2025-06-08T05:13:40,844 adding 'ena_upload/templates/ENA_template_samples_ERC000056.xml' 2025-06-08T05:13:40,847 adding 'ena_upload/templates/ENA_template_samples_ERC000057.xml' 2025-06-08T05:13:40,850 adding 'ena_upload/templates/ENA_template_samples_ERC000058.xml' 2025-06-08T05:13:40,851 adding 'ena_upload/templates/ENA_template_studies.xml' 2025-06-08T05:13:40,853 adding 'ena_upload/templates/ENA_template_submission.xml' 2025-06-08T05:13:40,856 adding 'ena_upload/templates/SRA.common.xsd' 2025-06-08T05:13:40,860 adding 'ena_upload/templates/SRA.experiment.xsd' 2025-06-08T05:13:40,863 adding 'ena_upload/templates/SRA.run.xsd' 2025-06-08T05:13:40,865 adding 'ena_upload/templates/SRA.sample.xsd' 2025-06-08T05:13:40,867 adding 'ena_upload/templates/SRA.study.xsd' 2025-06-08T05:13:40,869 adding 'ena_upload/templates/SRA.submission.xsd' 2025-06-08T05:13:40,871 adding 'ena_upload_cli-0.9.0.dist-info/licenses/LICENSE' 2025-06-08T05:13:40,873 adding 'tests/__init__.py' 2025-06-08T05:13:40,874 adding 'tests/test_ena_objects.py' 2025-06-08T05:13:40,877 adding 'ena_upload_cli-0.9.0.dist-info/METADATA' 2025-06-08T05:13:40,878 adding 'ena_upload_cli-0.9.0.dist-info/WHEEL' 2025-06-08T05:13:40,879 adding 'ena_upload_cli-0.9.0.dist-info/entry_points.txt' 2025-06-08T05:13:40,880 adding 'ena_upload_cli-0.9.0.dist-info/top_level.txt' 2025-06-08T05:13:40,882 adding 'ena_upload_cli-0.9.0.dist-info/RECORD' 2025-06-08T05:13:40,886 removing build/bdist.linux-armv7l/wheel 2025-06-08T05:13:41,013 Building wheel for ena-upload-cli (setup.py): finished with status 'done' 2025-06-08T05:13:41,017 Created wheel for ena-upload-cli: filename=ena_upload_cli-0.9.0-py3-none-any.whl size=202000 sha256=b738ab21f90ef2855191d4644663b71859113da5932671bd6026066467cd1955 2025-06-08T05:13:41,018 Stored in directory: /tmp/pip-ephem-wheel-cache-fzd47_1n/wheels/8d/65/e7/b483f74df3e7faef2fa9fcb5683ff2dc009ae9ec20336b2f98 2025-06-08T05:13:41,034 Successfully built ena-upload-cli 2025-06-08T05:13:41,042 Removed build tracker: '/tmp/pip-build-tracker-wrtuwlvz'