2025-06-08T07:50:58,450 Created temporary directory: /tmp/pip-build-tracker-_mgy_tmo
2025-06-08T07:50:58,452 Initialized build tracking at /tmp/pip-build-tracker-_mgy_tmo
2025-06-08T07:50:58,452 Created build tracker: /tmp/pip-build-tracker-_mgy_tmo
2025-06-08T07:50:58,453 Entered build tracker: /tmp/pip-build-tracker-_mgy_tmo
2025-06-08T07:50:58,454 Created temporary directory: /tmp/pip-wheel-8y0e9mhc
2025-06-08T07:50:58,458 Created temporary directory: /tmp/pip-ephem-wheel-cache-l4n3zj30
2025-06-08T07:50:58,514 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-06-08T07:50:58,516 2 location(s) to search for versions of abutils:
2025-06-08T07:50:58,516 * https://pypi.org/simple/abutils/
2025-06-08T07:50:58,516 * https://www.piwheels.org/simple/abutils/
2025-06-08T07:50:58,517 Fetching project page and analyzing links: https://pypi.org/simple/abutils/
2025-06-08T07:50:58,518 Getting page https://pypi.org/simple/abutils/
2025-06-08T07:50:58,520 Found index url https://pypi.org/simple/
2025-06-08T07:50:58,750 Fetched page https://pypi.org/simple/abutils/ as application/vnd.pypi.simple.v1+json
2025-06-08T07:50:58,769   Found link https://files.pythonhosted.org/packages/50/68/e90af4390a5bf4ae7f4d4c320618c21938407e2cbccb1d8eb9e2128129f7/abutils-0.0.1.tar.gz (from https://pypi.org/simple/abutils/), version: 0.0.1
2025-06-08T07:50:58,770   Found link https://files.pythonhosted.org/packages/2a/34/20450169e044c8a5b3f0789cb6792ac3f0d94ee7314aecda4332460d3996/abutils-0.0.2.tar.gz (from https://pypi.org/simple/abutils/), version: 0.0.2
2025-06-08T07:50:58,771   Found link https://files.pythonhosted.org/packages/e7/0b/92eacaadffa6dbe5536af17cd2288991862e5ca8a5193bc3f5f0c511939b/abutils-0.0.3.tar.gz (from https://pypi.org/simple/abutils/), version: 0.0.3
2025-06-08T07:50:58,772   Found link https://files.pythonhosted.org/packages/66/9c/c88a230d9a7df70ed076345a5697bffbac79affa98de6bc7335cbe399508/abutils-0.0.4.tar.gz (from https://pypi.org/simple/abutils/), version: 0.0.4
2025-06-08T07:50:58,772   Found link https://files.pythonhosted.org/packages/36/3e/e6b030787fca71eedbaaa8be3b8b0169a655c7403622bc0c418918121b72/abutils-0.0.5.tar.gz (from https://pypi.org/simple/abutils/), version: 0.0.5
2025-06-08T07:50:58,773   Found link https://files.pythonhosted.org/packages/c2/4b/a1c076b09bf2ab1f5545d0f9fe05c7861166c49ea9846f2d72f6306e792c/abutils-0.0.6.tar.gz (from https://pypi.org/simple/abutils/), version: 0.0.6
2025-06-08T07:50:58,774   Found link https://files.pythonhosted.org/packages/ba/48/ccd3a0f5de7c0b2857f163b24120b027f9b2d88b5b8898646a6126d2ce6b/abutils-0.0.7.tar.gz (from https://pypi.org/simple/abutils/), version: 0.0.7
2025-06-08T07:50:58,774   Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/8e/ba/0b774748bc954d98e3246982d1017d09459ecbc21a76628161aa49d4e3fc/abutils-0.1.0-py3-none-any.whl (from https://pypi.org/simple/abutils/)
2025-06-08T07:50:58,775   Found link https://files.pythonhosted.org/packages/8d/4f/f8bde54f3acd7bf945ac9d612145ca8fc2a0eecf26aa439921941211a91a/abutils-0.1.0.tar.gz (from https://pypi.org/simple/abutils/), version: 0.1.0
2025-06-08T07:50:58,776   Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/99/db/544d2861d9f00f1454ae247e50d074062929bdeb0c2d0e968f51e132320e/abutils-0.1.1-py3-none-any.whl (from https://pypi.org/simple/abutils/)
2025-06-08T07:50:58,776   Found link https://files.pythonhosted.org/packages/2e/53/f9f6ef913b46b47233508bafc5c4869a46f3c66a0ec9e446bef0537c88f6/abutils-0.1.1.tar.gz (from https://pypi.org/simple/abutils/), version: 0.1.1
2025-06-08T07:50:58,777   Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/72/6e/6af90e6c896511e60fa77eeb6742933760f8cc5ba8a8ffbea1bf00440dcf/abutils-0.2-py3-none-any.whl (from https://pypi.org/simple/abutils/)
2025-06-08T07:50:58,778   Found link https://files.pythonhosted.org/packages/58/06/198c2161367eed257bbbc6295af2f6bd9148bccd26f67535bd07d1974dfb/abutils-0.2.tar.gz (from https://pypi.org/simple/abutils/), version: 0.2
2025-06-08T07:50:58,778   Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/e9/6b/41bd824641aee954bdc00d6fcc3d7f411af32a68acdbb7330c59d7fab67f/abutils-0.2.1-py3-none-any.whl (from https://pypi.org/simple/abutils/)
2025-06-08T07:50:58,779   Found link https://files.pythonhosted.org/packages/c3/51/083596ecb529073ccc5142ffe85766aef208bd4d6925da8f771f6f95e256/abutils-0.2.1.tar.gz (from https://pypi.org/simple/abutils/), version: 0.2.1
2025-06-08T07:50:58,780   Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/94/cf/ae1ab5392b0f34c874cc8388d4df2985a2fc02d63dedcad0c2f4ca4b92bd/abutils-0.2.2-py3-none-any.whl (from https://pypi.org/simple/abutils/)
2025-06-08T07:50:58,780   Found link https://files.pythonhosted.org/packages/dc/f5/c8838ebb6fbaa6b3d01d01d2d56e2ad5352fbeebf5086542c5bcef34c06a/abutils-0.2.2.tar.gz (from https://pypi.org/simple/abutils/), version: 0.2.2
2025-06-08T07:50:58,781   Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/6a/94/90937a56b32783d6d57a2d6ff5e47d10d1d384f3d084e304f7870297853d/abutils-0.2.3-py3-none-any.whl (from https://pypi.org/simple/abutils/)
2025-06-08T07:50:58,781   Found link https://files.pythonhosted.org/packages/1e/a6/95c66c7ea2857825eb0af0fcd4e53687b65e4842b010caea5276bd97cd22/abutils-0.2.3.tar.gz (from https://pypi.org/simple/abutils/), version: 0.2.3
2025-06-08T07:50:58,782   Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/1b/b2/13e6e64fe25b4ef34bcd9fbd9785b8446dbca4cf4a7fbbafddbfba957aad/abutils-0.2.4-py3-none-any.whl (from https://pypi.org/simple/abutils/)
2025-06-08T07:50:58,782   Found link https://files.pythonhosted.org/packages/cc/04/a14461968dc575254af0e23cb7b259bfd57baa683653d88fcb21af6d526d/abutils-0.2.4.tar.gz (from https://pypi.org/simple/abutils/), version: 0.2.4
2025-06-08T07:50:58,783   Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/f8/0d/f3f7b8eb834c24ffe8bf065ce6ab6bf5a60953ea369b1714a5130c0f17fe/abutils-0.2.5-py3-none-any.whl (from https://pypi.org/simple/abutils/)
2025-06-08T07:50:58,783   Found link https://files.pythonhosted.org/packages/3a/91/b7e6649e58b286eb6bfcc14fbe33cc120e3ff30fbacf681b4dca97a448bd/abutils-0.2.5.tar.gz (from https://pypi.org/simple/abutils/), version: 0.2.5
2025-06-08T07:50:58,784   Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/12/e1/e1ceba3721fa4fff7f176206a290b81ec655694bd89734038c4d699fbb7e/abutils-0.2.6-py3-none-any.whl (from https://pypi.org/simple/abutils/)
2025-06-08T07:50:58,784   Found link https://files.pythonhosted.org/packages/45/72/e74e2706a57c4198e8bbd4808aede6033ab4d34fd3ee424340d0b9499677/abutils-0.2.6.tar.gz (from https://pypi.org/simple/abutils/), version: 0.2.6
2025-06-08T07:50:58,785   Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/c0/a4/19862643abc6afa356a2820636a33717d5be8c10526d201168493a638fae/abutils-0.2.7-py3-none-any.whl (from https://pypi.org/simple/abutils/)
2025-06-08T07:50:58,786   Found link https://files.pythonhosted.org/packages/00/01/891b1ca937c5e750cde18296579e86c2b58a95fed1bf39a5333d626a1d94/abutils-0.2.7.tar.gz (from https://pypi.org/simple/abutils/), version: 0.2.7
2025-06-08T07:50:58,787   Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/4b/65/46f8207ebbebc30eec8dde3eba9f5d2d2a16cf8450d4a083a27468c59d65/abutils-0.2.8-py3-none-any.whl (from https://pypi.org/simple/abutils/)
2025-06-08T07:50:58,787   Found link https://files.pythonhosted.org/packages/80/d4/73e1812e044e0443711b85e1037177b9cd39af0f21ece96e0745e9ddc266/abutils-0.2.8.tar.gz (from https://pypi.org/simple/abutils/), version: 0.2.8
2025-06-08T07:50:58,788   Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/b9/39/de6c569ad2cdc7e6a441e15f25f48fedac246ffc194729518308051e12ec/abutils-0.2.9-py3-none-any.whl (from https://pypi.org/simple/abutils/)
2025-06-08T07:50:58,789   Found link https://files.pythonhosted.org/packages/a2/a2/0c519de24d956d49801fe97153a28d623bd2fd411991d787b899b25c13a7/abutils-0.2.9.tar.gz (from https://pypi.org/simple/abutils/), version: 0.2.9
2025-06-08T07:50:58,789   Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/4d/fd/ba6899283eaf68474bc2e600c2a5708137473eae7bf7ba3c076cd6303767/abutils-0.2.10-py3-none-any.whl (from https://pypi.org/simple/abutils/)
2025-06-08T07:50:58,790   Found link https://files.pythonhosted.org/packages/16/2f/6264367df474ff3a9a5c5ef42771661bac1085d7133867270edb7c118684/abutils-0.2.10.tar.gz (from https://pypi.org/simple/abutils/), version: 0.2.10
2025-06-08T07:50:58,791   Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/92/86/5f63b53160c54dacfd8f2653c0a6039fb4366a117c060e5f289766ac7fa8/abutils-0.3.0-py3-none-any.whl (from https://pypi.org/simple/abutils/)
2025-06-08T07:50:58,792   Found link https://files.pythonhosted.org/packages/13/fc/afc4bbc66213912ee11b40a8ea571270b317c4367b5f28c523f6c3d4858f/abutils-0.3.0.tar.gz (from https://pypi.org/simple/abutils/), version: 0.3.0
2025-06-08T07:50:58,792   Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/69/1c/cfed98cabbae17e2c3c3c49395ddc92554335ffef1eec47a78682a5e6870/abutils-0.3.1-py3-none-any.whl (from https://pypi.org/simple/abutils/)
2025-06-08T07:50:58,793   Found link https://files.pythonhosted.org/packages/0b/fb/21d3594c4fe0ce1e7b035808b68c73e6a14eef95fb27fb27e45cb50ecf18/abutils-0.3.1.tar.gz (from https://pypi.org/simple/abutils/), version: 0.3.1
2025-06-08T07:50:58,793   Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/99/86/2e6b0ac4db36ffec78925d7fc6da7dfb15017038325f8daa7feac0729f03/abutils-0.4.1-py3-none-any.whl (from https://pypi.org/simple/abutils/) (requires-python:>=3.8)
2025-06-08T07:50:58,794   Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/f6/d6/90c610e33db7ea064aaf85e875712994d51c6594fa034ea6dba0f994a332/abutils-0.4.2-py3-none-any.whl (from https://pypi.org/simple/abutils/) (requires-python:>=3.8)
2025-06-08T07:50:58,795   Found link https://files.pythonhosted.org/packages/05/4f/d2a62ba3753455ecb46772cb2c6c99148904a1fb1066e5ffb3a45d62ce53/abutils-0.4.2.tar.gz (from https://pypi.org/simple/abutils/) (requires-python:>=3.8), version: 0.4.2
2025-06-08T07:50:58,796   Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/e1/fe/c5bb8d54b0c116ec2580b04b3a21f19c017b2437602701cda5a59012cad0/abutils-0.4.3-py3-none-any.whl (from https://pypi.org/simple/abutils/) (requires-python:>=3.8)
2025-06-08T07:50:58,796   Found link https://files.pythonhosted.org/packages/27/8c/e1177b8f90d4c56b25d779562900871e838398f003f10493c41383959492/abutils-0.4.3.tar.gz (from https://pypi.org/simple/abutils/) (requires-python:>=3.8), version: 0.4.3
2025-06-08T07:50:58,797   Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/91/30/af7cea776cae6162286b03857e130350556991bf5e25435931b4e6e7fa59/abutils-0.4.4-py3-none-any.whl (from https://pypi.org/simple/abutils/) (requires-python:>=3.8)
2025-06-08T07:50:58,798   Found link https://files.pythonhosted.org/packages/38/35/b3ec5ecbd44bfb5d81d6d76f4eae2a5c6f8d19b31e4a2e98526ccfe98a83/abutils-0.4.4.tar.gz (from https://pypi.org/simple/abutils/) (requires-python:>=3.8), version: 0.4.4
2025-06-08T07:50:58,799   Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/97/c7/38f78f7d9f6ec2b43ee909c0d72e3da5b1f357eb2137f9b72309e761843b/abutils-0.4.5-py3-none-any.whl (from https://pypi.org/simple/abutils/) (requires-python:>=3.8)
2025-06-08T07:50:58,799   Found link https://files.pythonhosted.org/packages/14/ba/621da2e617c467936d12b7568b959ad5b15b2859ac421b5d7fdfdb9de6b8/abutils-0.4.5.tar.gz (from https://pypi.org/simple/abutils/) (requires-python:>=3.8), version: 0.4.5
2025-06-08T07:50:58,800   Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/05/eb/9553cce771bb8b7f780f78b887be3f04e186a953bf460e96030da1731c33/abutils-0.4.9-py3-none-any.whl (from https://pypi.org/simple/abutils/) (requires-python:>=3.8)
2025-06-08T07:50:58,801   Found link https://files.pythonhosted.org/packages/3d/3d/1d6bcd5d2f39921243c260d65d9d69a2135366ca609c066193628e978615/abutils-0.4.9.tar.gz (from https://pypi.org/simple/abutils/) (requires-python:>=3.8), version: 0.4.9
2025-06-08T07:50:58,802   Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/3b/43/a761fac80ad5f4b4029940af8605954745361743d4367d87fbdd3409d586/abutils-0.4.10-py3-none-any.whl (from https://pypi.org/simple/abutils/) (requires-python:>=3.8)
2025-06-08T07:50:58,802   Found link https://files.pythonhosted.org/packages/74/d5/431539f8bd6ee44d1c963a82a13a53280f4fc4aea996361f10dc625bffe5/abutils-0.4.10.tar.gz (from https://pypi.org/simple/abutils/) (requires-python:>=3.8), version: 0.4.10
2025-06-08T07:50:58,803   Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/d8/88/57ba0fba975a4ebba5fc08c7653fba9062762f4a93428ef15142a2519e80/abutils-0.4.11-py3-none-any.whl (from https://pypi.org/simple/abutils/) (requires-python:>=3.8)
2025-06-08T07:50:58,804   Found link https://files.pythonhosted.org/packages/ba/0e/663ca692cb581947eb48e026cd1c487a8fb04f0c8ec070179ba2d7fa8965/abutils-0.4.11.tar.gz (from https://pypi.org/simple/abutils/) (requires-python:>=3.8), version: 0.4.11
2025-06-08T07:50:58,804   Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/58/d6/7fe0dbc7af905014453abfc46234b97eb3839c674564570acaaa849ef66d/abutils-0.4.12-py3-none-any.whl (from https://pypi.org/simple/abutils/) (requires-python:>=3.8)
2025-06-08T07:50:58,805   Found link https://files.pythonhosted.org/packages/bc/9e/f8b9536d718d825a05d17da487afcc464bf73aaf90f218bc7c61d980db17/abutils-0.4.12.tar.gz (from https://pypi.org/simple/abutils/) (requires-python:>=3.8), version: 0.4.12
2025-06-08T07:50:58,806   Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/58/d0/204c4d0399a3bf147a462fbcc7348256abf67ca554a15f3b2693ee166e20/abutils-0.4.13-py3-none-any.whl (from https://pypi.org/simple/abutils/) (requires-python:>=3.8)
2025-06-08T07:50:58,806   Found link https://files.pythonhosted.org/packages/db/b0/70644d9b16f63d1d8b7ff1cc62197c2f294f6b290fdaa18e63a1ff351abb/abutils-0.4.13.tar.gz (from https://pypi.org/simple/abutils/) (requires-python:>=3.8), version: 0.4.13
2025-06-08T07:50:58,807   Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/27/67/e9482fbb7c68ca766c27d16eeec49435a39441b7c537141a9d934eb572a7/abutils-0.4.14-py3-none-any.whl (from https://pypi.org/simple/abutils/) (requires-python:>=3.8)
2025-06-08T07:50:58,808   Found link https://files.pythonhosted.org/packages/be/a6/37faa00529f6e4ee9755159f09b0d0944a13a9c61c77473f6b48d0899353/abutils-0.4.14.tar.gz (from https://pypi.org/simple/abutils/) (requires-python:>=3.8), version: 0.4.14
2025-06-08T07:50:58,809   Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/d0/ca/9b0f9dd1cac5d0aab37aae686163c755ab047c39977b78a433210004809b/abutils-0.4.15-py3-none-any.whl (from https://pypi.org/simple/abutils/) (requires-python:>=3.8)
2025-06-08T07:50:58,809   Found link https://files.pythonhosted.org/packages/06/4f/e408816f82dc664ecb207d665b10ac107e72511ff35fe3aa2faef61beaa6/abutils-0.4.15.tar.gz (from https://pypi.org/simple/abutils/) (requires-python:>=3.8), version: 0.4.15
2025-06-08T07:50:58,810   Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/d5/c8/ed9f589b0dad8d7b21defab7e746063a521f5c58512914e6f69c61f8653c/abutils-0.4.16-py3-none-any.whl (from https://pypi.org/simple/abutils/) (requires-python:>=3.8)
2025-06-08T07:50:58,811   Found link https://files.pythonhosted.org/packages/17/60/7cbf5a780e902a382bdf2d2d7234e31865d1396d4810b32baa82c655bc6c/abutils-0.4.16.tar.gz (from https://pypi.org/simple/abutils/) (requires-python:>=3.8), version: 0.4.16
2025-06-08T07:50:58,811   Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/af/7d/1cd869e982424d2ab272bcd2494097cf835d5b5008f99c3fc20bb424859f/abutils-0.4.17-py3-none-any.whl (from https://pypi.org/simple/abutils/) (requires-python:>=3.8)
2025-06-08T07:50:58,812   Found link https://files.pythonhosted.org/packages/82/cd/9a3860c7b4ac151b66d86f96e8e5f08ff595b691ec42ffda3a2ded4accff/abutils-0.4.17.tar.gz (from https://pypi.org/simple/abutils/) (requires-python:>=3.8), version: 0.4.17
2025-06-08T07:50:58,813   Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/71/99/e6ff52fa04ff1caaefacc71cb15c8b0e6ae73b630f3d9c5046fa72c46ab0/abutils-0.4.18-py3-none-any.whl (from https://pypi.org/simple/abutils/) (requires-python:>=3.8)
2025-06-08T07:50:58,814   Found link https://files.pythonhosted.org/packages/99/58/2a2a8151f98a8787a9f8d44b4e73ffdf9681c48fad3a365169b23314ab75/abutils-0.4.18.tar.gz (from https://pypi.org/simple/abutils/) (requires-python:>=3.8), version: 0.4.18
2025-06-08T07:50:58,814   Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/c5/81/8a9d99a2f18ae4e3486a3144bc86ba974b7572e0af7e393d94247c6c07c2/abutils-0.5.0-py3-none-any.whl (from https://pypi.org/simple/abutils/) (requires-python:>=3.8)
2025-06-08T07:50:58,815   Found link https://files.pythonhosted.org/packages/03/a6/9f22bbc825b9f9d4b1ab512b5dd6f839e0d34713e3d9314101dc256a6153/abutils-0.5.0.tar.gz (from https://pypi.org/simple/abutils/) (requires-python:>=3.8), version: 0.5.0
2025-06-08T07:50:58,816   Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/e2/16/e0fa4186d41cde63deecd3ab29d87a252115767d6ed8bdddfefa8c38fdc7/abutils-0.5.1-py3-none-any.whl (from https://pypi.org/simple/abutils/) (requires-python:>=3.10)
2025-06-08T07:50:58,817   Found link https://files.pythonhosted.org/packages/3e/6d/7f9b56899d88600fa359a8712552225ff147656253db26861756f9c8af07/abutils-0.5.1.tar.gz (from https://pypi.org/simple/abutils/) (requires-python:>=3.10), version: 0.5.1
2025-06-08T07:50:58,817   Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/6e/46/4aea83f2a06467b49dd6bc4bf8210a2fc2a839287fbcbbc87f3ee0c0a092/abutils-0.5.2-py3-none-any.whl (from https://pypi.org/simple/abutils/) (requires-python:>=3.10)
2025-06-08T07:50:58,818   Found link https://files.pythonhosted.org/packages/aa/99/c8973219cdbbe16e49bf7185a83cff4e0434f997c982ee792f68702ee818/abutils-0.5.2.tar.gz (from https://pypi.org/simple/abutils/) (requires-python:>=3.10), version: 0.5.2
2025-06-08T07:50:58,819   Skipping link: No binaries permitted for abutils: https://files.pythonhosted.org/packages/d0/e0/27e6fa2a3b56e280e1c115f424730853337f846c64d9b13d9d241a92c678/abutils-0.5.3-py3-none-any.whl (from https://pypi.org/simple/abutils/) (requires-python:>=3.10)
2025-06-08T07:50:58,820   Found link https://files.pythonhosted.org/packages/91/87/9a30443a62cc5d6fe527640fdcb181e6d3dbb8151c3dadca1292ee0c9e8b/abutils-0.5.3.tar.gz (from https://pypi.org/simple/abutils/) (requires-python:>=3.10), version: 0.5.3
2025-06-08T07:50:58,821 Fetching project page and analyzing links: https://www.piwheels.org/simple/abutils/
2025-06-08T07:50:58,822 Getting page https://www.piwheels.org/simple/abutils/
2025-06-08T07:50:58,823 Found index url https://www.piwheels.org/simple/
2025-06-08T07:50:58,995 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/abutils/
2025-06-08T07:50:59,653 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/abutils/
2025-06-08T07:51:00,823 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/abutils/
2025-06-08T07:51:02,994 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/abutils/
2025-06-08T07:51:07,168 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/abutils/
2025-06-08T07:51:07,340 Could not fetch URL https://www.piwheels.org/simple/abutils/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/abutils/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping
2025-06-08T07:51:07,342 Skipping link: not a file: https://www.piwheels.org/simple/abutils/
2025-06-08T07:51:07,342 Skipping link: not a file: https://pypi.org/simple/abutils/
2025-06-08T07:51:07,370 Given no hashes to check 1 links for project 'abutils': discarding no candidates
2025-06-08T07:51:07,372 Collecting abutils==0.5.3
2025-06-08T07:51:07,375   Created temporary directory: /tmp/pip-unpack-5iyx_4p6
2025-06-08T07:51:07,606   Downloading abutils-0.5.3.tar.gz (86.1 MB)
2025-06-08T07:51:27,995   Added abutils==0.5.3 from https://files.pythonhosted.org/packages/91/87/9a30443a62cc5d6fe527640fdcb181e6d3dbb8151c3dadca1292ee0c9e8b/abutils-0.5.3.tar.gz to build tracker '/tmp/pip-build-tracker-_mgy_tmo'
2025-06-08T07:51:27,997   Running setup.py (path:/tmp/pip-wheel-8y0e9mhc/abutils_c044668426714e2d8ab6797cea7145e5/setup.py) egg_info for package abutils
2025-06-08T07:51:27,998   Created temporary directory: /tmp/pip-pip-egg-info-hbxapy_y
2025-06-08T07:51:27,999   Preparing metadata (setup.py): started
2025-06-08T07:51:28,000   Running command python setup.py egg_info
2025-06-08T07:51:28,594   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
2025-06-08T07:51:28,594   !!

2025-06-08T07:51:28,595           ********************************************************************************
2025-06-08T07:51:28,596           Usage of dash-separated 'description-file' will not be supported in future
2025-06-08T07:51:28,597           versions. Please use the underscore name 'description_file' instead.

2025-06-08T07:51:28,598           By 2026-Mar-03, you need to update your project and remove deprecated calls
2025-06-08T07:51:28,598           or your builds will no longer be supported.

2025-06-08T07:51:28,600           See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
2025-06-08T07:51:28,600           ********************************************************************************

2025-06-08T07:51:28,601   !!
2025-06-08T07:51:28,602     opt = self._enforce_underscore(opt, section)
2025-06-08T07:51:28,947   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
2025-06-08T07:51:28,948   !!

2025-06-08T07:51:28,949           ********************************************************************************
2025-06-08T07:51:28,949           Usage of dash-separated 'description-file' will not be supported in future
2025-06-08T07:51:28,950           versions. Please use the underscore name 'description_file' instead.
2025-06-08T07:51:28,951           (Affected: abutils).

2025-06-08T07:51:28,952           By 2026-Mar-03, you need to update your project and remove deprecated calls
2025-06-08T07:51:28,953           or your builds will no longer be supported.

2025-06-08T07:51:28,954           See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
2025-06-08T07:51:28,954           ********************************************************************************

2025-06-08T07:51:28,955   !!
2025-06-08T07:51:28,956     opt = self._enforce_underscore(opt, section)
2025-06-08T07:51:28,956   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-06-08T07:51:28,957   !!

2025-06-08T07:51:28,957           ********************************************************************************
2025-06-08T07:51:28,958           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-06-08T07:51:28,959           License :: OSI Approved :: MIT License

2025-06-08T07:51:28,960           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-06-08T07:51:28,960           ********************************************************************************

2025-06-08T07:51:28,961   !!
2025-06-08T07:51:28,962     self._finalize_license_expression()
2025-06-08T07:51:28,983   running egg_info
2025-06-08T07:51:29,012   creating /tmp/pip-pip-egg-info-hbxapy_y/abutils.egg-info
2025-06-08T07:51:29,013   writing /tmp/pip-pip-egg-info-hbxapy_y/abutils.egg-info/PKG-INFO
2025-06-08T07:51:29,018   writing dependency_links to /tmp/pip-pip-egg-info-hbxapy_y/abutils.egg-info/dependency_links.txt
2025-06-08T07:51:29,020   writing requirements to /tmp/pip-pip-egg-info-hbxapy_y/abutils.egg-info/requires.txt
2025-06-08T07:51:29,021   writing top-level names to /tmp/pip-pip-egg-info-hbxapy_y/abutils.egg-info/top_level.txt
2025-06-08T07:51:29,023   writing manifest file '/tmp/pip-pip-egg-info-hbxapy_y/abutils.egg-info/SOURCES.txt'
2025-06-08T07:51:29,128   reading manifest file '/tmp/pip-pip-egg-info-hbxapy_y/abutils.egg-info/SOURCES.txt'
2025-06-08T07:51:29,130   reading manifest template 'MANIFEST.in'
2025-06-08T07:51:29,134   warning: no files found matching 'abutils/tenx/*'
2025-06-08T07:51:29,151   adding license file 'LICENSE'
2025-06-08T07:51:29,160   writing manifest file '/tmp/pip-pip-egg-info-hbxapy_y/abutils.egg-info/SOURCES.txt'
2025-06-08T07:51:29,267   Preparing metadata (setup.py): finished with status 'done'
2025-06-08T07:51:29,272   Source in /tmp/pip-wheel-8y0e9mhc/abutils_c044668426714e2d8ab6797cea7145e5 has version 0.5.3, which satisfies requirement abutils==0.5.3 from https://files.pythonhosted.org/packages/91/87/9a30443a62cc5d6fe527640fdcb181e6d3dbb8151c3dadca1292ee0c9e8b/abutils-0.5.3.tar.gz
2025-06-08T07:51:29,273   Removed abutils==0.5.3 from https://files.pythonhosted.org/packages/91/87/9a30443a62cc5d6fe527640fdcb181e6d3dbb8151c3dadca1292ee0c9e8b/abutils-0.5.3.tar.gz from build tracker '/tmp/pip-build-tracker-_mgy_tmo'
2025-06-08T07:51:29,283 Created temporary directory: /tmp/pip-unpack-ewqfd_yz
2025-06-08T07:51:29,284 Created temporary directory: /tmp/pip-unpack-6o4h0rgd
2025-06-08T07:51:29,285 Building wheels for collected packages: abutils
2025-06-08T07:51:29,290   Created temporary directory: /tmp/pip-wheel-s3rqpfcq
2025-06-08T07:51:29,291   DEPRECATION: Building 'abutils' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'abutils'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-06-08T07:51:29,292   Building wheel for abutils (setup.py): started
2025-06-08T07:51:29,293   Destination directory: /tmp/pip-wheel-s3rqpfcq
2025-06-08T07:51:29,294   Running command python setup.py bdist_wheel
2025-06-08T07:51:29,825   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
2025-06-08T07:51:29,825   !!

2025-06-08T07:51:29,826           ********************************************************************************
2025-06-08T07:51:29,827           Usage of dash-separated 'description-file' will not be supported in future
2025-06-08T07:51:29,827           versions. Please use the underscore name 'description_file' instead.

2025-06-08T07:51:29,828           By 2026-Mar-03, you need to update your project and remove deprecated calls
2025-06-08T07:51:29,829           or your builds will no longer be supported.

2025-06-08T07:51:29,830           See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
2025-06-08T07:51:29,830           ********************************************************************************

2025-06-08T07:51:29,831   !!
2025-06-08T07:51:29,832     opt = self._enforce_underscore(opt, section)
2025-06-08T07:51:30,157   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
2025-06-08T07:51:30,158   !!

2025-06-08T07:51:30,159           ********************************************************************************
2025-06-08T07:51:30,160           Usage of dash-separated 'description-file' will not be supported in future
2025-06-08T07:51:30,160           versions. Please use the underscore name 'description_file' instead.
2025-06-08T07:51:30,161           (Affected: abutils).

2025-06-08T07:51:30,162           By 2026-Mar-03, you need to update your project and remove deprecated calls
2025-06-08T07:51:30,162           or your builds will no longer be supported.

2025-06-08T07:51:30,163           See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
2025-06-08T07:51:30,164           ********************************************************************************

2025-06-08T07:51:30,165   !!
2025-06-08T07:51:30,166     opt = self._enforce_underscore(opt, section)
2025-06-08T07:51:30,166   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-06-08T07:51:30,167   !!

2025-06-08T07:51:30,168           ********************************************************************************
2025-06-08T07:51:30,168           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-06-08T07:51:30,170           License :: OSI Approved :: MIT License

2025-06-08T07:51:30,171           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-06-08T07:51:30,171           ********************************************************************************

2025-06-08T07:51:30,172   !!
2025-06-08T07:51:30,173     self._finalize_license_expression()
2025-06-08T07:51:30,173   running bdist_wheel
2025-06-08T07:51:30,302   running build
2025-06-08T07:51:30,303   running build_py
2025-06-08T07:51:30,335   creating build/lib/abutils
2025-06-08T07:51:30,337   copying abutils/tl.py -> build/lib/abutils
2025-06-08T07:51:30,339   copying abutils/__init__.py -> build/lib/abutils
2025-06-08T07:51:30,341   copying abutils/cl.py -> build/lib/abutils
2025-06-08T07:51:30,343   copying abutils/pl.py -> build/lib/abutils
2025-06-08T07:51:30,346   copying abutils/bin.py -> build/lib/abutils
2025-06-08T07:51:30,348   copying abutils/version.py -> build/lib/abutils
2025-06-08T07:51:30,350   copying abutils/pp.py -> build/lib/abutils
2025-06-08T07:51:30,352   copying abutils/log.py -> build/lib/abutils
2025-06-08T07:51:30,354   copying abutils/io.py -> build/lib/abutils
2025-06-08T07:51:30,358   creating build/lib/abutils/tools
2025-06-08T07:51:30,360   copying abutils/tools/cloning.py -> build/lib/abutils/tools
2025-06-08T07:51:30,362   copying abutils/tools/__init__.py -> build/lib/abutils/tools
2025-06-08T07:51:30,364   copying abutils/tools/phylo.py -> build/lib/abutils/tools
2025-06-08T07:51:30,369   copying abutils/tools/alignment.py -> build/lib/abutils/tools
2025-06-08T07:51:30,373   copying abutils/tools/similarity.py -> build/lib/abutils/tools
2025-06-08T07:51:30,376   copying abutils/tools/anarci.py -> build/lib/abutils/tools
2025-06-08T07:51:30,378   copying abutils/tools/cluster.py -> build/lib/abutils/tools
2025-06-08T07:51:30,381   copying abutils/tools/clonify.py -> build/lib/abutils/tools
2025-06-08T07:51:30,385   copying abutils/tools/preprocessing.py -> build/lib/abutils/tools
2025-06-08T07:51:30,388   copying abutils/tools/log.py -> build/lib/abutils/tools
2025-06-08T07:51:30,392   copying abutils/tools/search.py -> build/lib/abutils/tools
2025-06-08T07:51:30,395   creating build/lib/abutils/preprocess
2025-06-08T07:51:30,396   copying abutils/preprocess/__init__.py -> build/lib/abutils/preprocess
2025-06-08T07:51:30,398   copying abutils/preprocess/preprocess.py -> build/lib/abutils/preprocess
2025-06-08T07:51:30,402   creating build/lib/abutils/core
2025-06-08T07:51:30,403   copying abutils/core/lineage.py -> build/lib/abutils/core
2025-06-08T07:51:30,407   copying abutils/core/__init__.py -> build/lib/abutils/core
2025-06-08T07:51:30,409   copying abutils/core/sequence.py -> build/lib/abutils/core
2025-06-08T07:51:30,413   copying abutils/core/pair.py -> build/lib/abutils/core
2025-06-08T07:51:30,419   creating build/lib/abutils/tests
2025-06-08T07:51:30,420   copying abutils/tests/__init__.py -> build/lib/abutils/tests
2025-06-08T07:51:30,422   copying abutils/tests/test_cloning.py -> build/lib/abutils/tests
2025-06-08T07:51:30,425   copying abutils/tests/test_sequence.py -> build/lib/abutils/tests
2025-06-08T07:51:30,428   copying abutils/tests/test_preprocessing.py -> build/lib/abutils/tests
2025-06-08T07:51:30,432   copying abutils/tests/test_cluster.py -> build/lib/abutils/tests
2025-06-08T07:51:30,435   copying abutils/tests/test_utilities.py -> build/lib/abutils/tests
2025-06-08T07:51:30,437   copying abutils/tests/test_phylo.py -> build/lib/abutils/tests
2025-06-08T07:51:30,440   copying abutils/tests/test_alignment.py -> build/lib/abutils/tests
2025-06-08T07:51:30,443   copying abutils/tests/test_pair.py -> build/lib/abutils/tests
2025-06-08T07:51:30,447   copying abutils/tests/test_color.py -> build/lib/abutils/tests
2025-06-08T07:51:30,450   copying abutils/tests/test_clonify.py -> build/lib/abutils/tests
2025-06-08T07:51:30,454   creating build/lib/abutils/utils
2025-06-08T07:51:30,456   copying abutils/utils/color.py -> build/lib/abutils/utils
2025-06-08T07:51:30,459   copying abutils/utils/codons.py -> build/lib/abutils/utils
2025-06-08T07:51:30,462   copying abutils/utils/click.py -> build/lib/abutils/utils
2025-06-08T07:51:30,465   copying abutils/utils/__init__.py -> build/lib/abutils/utils
2025-06-08T07:51:30,467   copying abutils/utils/mongodb.py -> build/lib/abutils/utils
2025-06-08T07:51:30,471   copying abutils/utils/database.py -> build/lib/abutils/utils
2025-06-08T07:51:30,474   copying abutils/utils/convert.py -> build/lib/abutils/utils
2025-06-08T07:51:30,476   copying abutils/utils/alignment.py -> build/lib/abutils/utils
2025-06-08T07:51:30,481   copying abutils/utils/seqio.py -> build/lib/abutils/utils
2025-06-08T07:51:30,483   copying abutils/utils/circos.py -> build/lib/abutils/utils
2025-06-08T07:51:30,486   copying abutils/utils/utilities.py -> build/lib/abutils/utils
2025-06-08T07:51:30,489   copying abutils/utils/ssh_tunnel.py -> build/lib/abutils/utils
2025-06-08T07:51:30,492   copying abutils/utils/cluster.py -> build/lib/abutils/utils
2025-06-08T07:51:30,495   copying abutils/utils/germlines.py -> build/lib/abutils/utils
2025-06-08T07:51:30,499   copying abutils/utils/path.py -> build/lib/abutils/utils
2025-06-08T07:51:30,501   copying abutils/utils/progbar.py -> build/lib/abutils/utils
2025-06-08T07:51:30,504   copying abutils/utils/s3.py -> build/lib/abutils/utils
2025-06-08T07:51:30,507   copying abutils/utils/phylogeny.py -> build/lib/abutils/utils
2025-06-08T07:51:30,511   copying abutils/utils/log.py -> build/lib/abutils/utils
2025-06-08T07:51:30,513   copying abutils/utils/jobs.py -> build/lib/abutils/utils
2025-06-08T07:51:30,516   copying abutils/utils/decorators.py -> build/lib/abutils/utils
2025-06-08T07:51:30,520   creating build/lib/abutils/plots
2025-06-08T07:51:30,521   copying abutils/plots/ridge.py -> build/lib/abutils/plots
2025-06-08T07:51:30,525   copying abutils/plots/lineage.py -> build/lib/abutils/plots
2025-06-08T07:51:30,528   copying abutils/plots/donut.py -> build/lib/abutils/plots
2025-06-08T07:51:30,531   copying abutils/plots/__init__.py -> build/lib/abutils/plots
2025-06-08T07:51:30,534   copying abutils/plots/bar.py -> build/lib/abutils/plots
2025-06-08T07:51:30,538   copying abutils/plots/summary.py -> build/lib/abutils/plots
2025-06-08T07:51:30,540   copying abutils/plots/heatmap.py -> build/lib/abutils/plots
2025-06-08T07:51:30,544   copying abutils/plots/scatter.py -> build/lib/abutils/plots
2025-06-08T07:51:30,547   copying abutils/plots/kde.py -> build/lib/abutils/plots
2025-06-08T07:51:30,551   copying abutils/plots/utils.py -> build/lib/abutils/plots
2025-06-08T07:51:30,554   copying abutils/plots/base.py -> build/lib/abutils/plots
2025-06-08T07:51:30,556   copying abutils/plots/data.py -> build/lib/abutils/plots
2025-06-08T07:51:30,559   copying abutils/plots/ring.py -> build/lib/abutils/plots
2025-06-08T07:51:30,562   creating build/lib/abutils/plots/mixins
2025-06-08T07:51:30,564   copying abutils/plots/mixins/hue.py -> build/lib/abutils/plots/mixins
2025-06-08T07:51:30,567   copying abutils/plots/mixins/__init__.py -> build/lib/abutils/plots/mixins
2025-06-08T07:51:30,569   creating build/lib/abutils/plots/models
2025-06-08T07:51:30,571   copying abutils/plots/models/__init__.py -> build/lib/abutils/plots/models
2025-06-08T07:51:30,573   copying abutils/plots/models/data.py -> build/lib/abutils/plots/models
2025-06-08T07:51:30,576   running egg_info
2025-06-08T07:51:30,607   writing abutils.egg-info/PKG-INFO
2025-06-08T07:51:30,611   writing dependency_links to abutils.egg-info/dependency_links.txt
2025-06-08T07:51:30,614   writing requirements to abutils.egg-info/requires.txt
2025-06-08T07:51:30,615   writing top-level names to abutils.egg-info/top_level.txt
2025-06-08T07:51:30,656   reading manifest file 'abutils.egg-info/SOURCES.txt'
2025-06-08T07:51:30,669   reading manifest template 'MANIFEST.in'
2025-06-08T07:51:30,673   warning: no files found matching 'abutils/tenx/*'
2025-06-08T07:51:30,685   adding license file 'LICENSE'
2025-06-08T07:51:30,697   writing manifest file 'abutils.egg-info/SOURCES.txt'
2025-06-08T07:51:30,700   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'abutils.binaries' is absent from the `packages` configuration.
2025-06-08T07:51:30,701   !!

2025-06-08T07:51:30,702           ********************************************************************************
2025-06-08T07:51:30,703           ############################
2025-06-08T07:51:30,703           # Package would be ignored #
2025-06-08T07:51:30,704           ############################
2025-06-08T07:51:30,704           Python recognizes 'abutils.binaries' as an importable package[^1],
2025-06-08T07:51:30,705           but it is absent from setuptools' `packages` configuration.

2025-06-08T07:51:30,706           This leads to an ambiguous overall configuration. If you want to distribute this
2025-06-08T07:51:30,707           package, please make sure that 'abutils.binaries' is explicitly added
2025-06-08T07:51:30,707           to the `packages` configuration field.

2025-06-08T07:51:30,709           Alternatively, you can also rely on setuptools' discovery methods
2025-06-08T07:51:30,709           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-06-08T07:51:30,710           instead of `find_packages(...)`/`find:`).

2025-06-08T07:51:30,711           You can read more about "package discovery" on setuptools documentation page:

2025-06-08T07:51:30,712           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-06-08T07:51:30,713           If you don't want 'abutils.binaries' to be distributed and are
2025-06-08T07:51:30,714           already explicitly excluding 'abutils.binaries' via
2025-06-08T07:51:30,714           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-06-08T07:51:30,714           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-06-08T07:51:30,715           combination with a more fine grained `package-data` configuration.

2025-06-08T07:51:30,715           You can read more about "package data files" on setuptools documentation page:

2025-06-08T07:51:30,716           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-06-08T07:51:30,718           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-06-08T07:51:30,718                 even if it does not contain any `.py` files.
2025-06-08T07:51:30,718                 On the other hand, currently there is no concept of package data
2025-06-08T07:51:30,719                 directory, all directories are treated like packages.
2025-06-08T07:51:30,719           ********************************************************************************

2025-06-08T07:51:30,720   !!
2025-06-08T07:51:30,721     check.warn(importable)
2025-06-08T07:51:30,721   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'abutils.binaries.mafft_darwin' is absent from the `packages` configuration.
2025-06-08T07:51:30,721   !!

2025-06-08T07:51:30,723           ********************************************************************************
2025-06-08T07:51:30,723           ############################
2025-06-08T07:51:30,724           # Package would be ignored #
2025-06-08T07:51:30,724           ############################
2025-06-08T07:51:30,724           Python recognizes 'abutils.binaries.mafft_darwin' as an importable package[^1],
2025-06-08T07:51:30,725           but it is absent from setuptools' `packages` configuration.

2025-06-08T07:51:30,726           This leads to an ambiguous overall configuration. If you want to distribute this
2025-06-08T07:51:30,727           package, please make sure that 'abutils.binaries.mafft_darwin' is explicitly added
2025-06-08T07:51:30,727           to the `packages` configuration field.

2025-06-08T07:51:30,728           Alternatively, you can also rely on setuptools' discovery methods
2025-06-08T07:51:30,728           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-06-08T07:51:30,729           instead of `find_packages(...)`/`find:`).

2025-06-08T07:51:30,730           You can read more about "package discovery" on setuptools documentation page:

2025-06-08T07:51:30,731           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-06-08T07:51:30,732           If you don't want 'abutils.binaries.mafft_darwin' to be distributed and are
2025-06-08T07:51:30,733           already explicitly excluding 'abutils.binaries.mafft_darwin' via
2025-06-08T07:51:30,733           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-06-08T07:51:30,734           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-06-08T07:51:30,734           combination with a more fine grained `package-data` configuration.

2025-06-08T07:51:30,735           You can read more about "package data files" on setuptools documentation page:

2025-06-08T07:51:30,736           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-06-08T07:51:30,738           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-06-08T07:51:30,739                 even if it does not contain any `.py` files.
2025-06-08T07:51:30,739                 On the other hand, currently there is no concept of package data
2025-06-08T07:51:30,740                 directory, all directories are treated like packages.
2025-06-08T07:51:30,740           ********************************************************************************

2025-06-08T07:51:30,742   !!
2025-06-08T07:51:30,742     check.warn(importable)
2025-06-08T07:51:30,742   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'abutils.binaries.mafft_darwin.mafftdir.bin' is absent from the `packages` configuration.
2025-06-08T07:51:30,743   !!

2025-06-08T07:51:30,743           ********************************************************************************
2025-06-08T07:51:30,744           ############################
2025-06-08T07:51:30,744           # Package would be ignored #
2025-06-08T07:51:30,745           ############################
2025-06-08T07:51:30,745           Python recognizes 'abutils.binaries.mafft_darwin.mafftdir.bin' as an importable package[^1],
2025-06-08T07:51:30,745           but it is absent from setuptools' `packages` configuration.

2025-06-08T07:51:30,746           This leads to an ambiguous overall configuration. If you want to distribute this
2025-06-08T07:51:30,747           package, please make sure that 'abutils.binaries.mafft_darwin.mafftdir.bin' is explicitly added
2025-06-08T07:51:30,747           to the `packages` configuration field.

2025-06-08T07:51:30,748           Alternatively, you can also rely on setuptools' discovery methods
2025-06-08T07:51:30,748           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-06-08T07:51:30,749           instead of `find_packages(...)`/`find:`).

2025-06-08T07:51:30,750           You can read more about "package discovery" on setuptools documentation page:

2025-06-08T07:51:30,751           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-06-08T07:51:30,752           If you don't want 'abutils.binaries.mafft_darwin.mafftdir.bin' to be distributed and are
2025-06-08T07:51:30,752           already explicitly excluding 'abutils.binaries.mafft_darwin.mafftdir.bin' via
2025-06-08T07:51:30,753           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-06-08T07:51:30,753           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-06-08T07:51:30,754           combination with a more fine grained `package-data` configuration.

2025-06-08T07:51:30,755           You can read more about "package data files" on setuptools documentation page:

2025-06-08T07:51:30,756           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-06-08T07:51:30,757           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-06-08T07:51:30,757                 even if it does not contain any `.py` files.
2025-06-08T07:51:30,758                 On the other hand, currently there is no concept of package data
2025-06-08T07:51:30,759                 directory, all directories are treated like packages.
2025-06-08T07:51:30,760           ********************************************************************************

2025-06-08T07:51:30,761   !!
2025-06-08T07:51:30,762     check.warn(importable)
2025-06-08T07:51:30,763   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'abutils.binaries.mafft_darwin.mafftdir.libexec' is absent from the `packages` configuration.
2025-06-08T07:51:30,764   !!

2025-06-08T07:51:30,766           ********************************************************************************
2025-06-08T07:51:30,767           ############################
2025-06-08T07:51:30,767           # Package would be ignored #
2025-06-08T07:51:30,768           ############################
2025-06-08T07:51:30,768           Python recognizes 'abutils.binaries.mafft_darwin.mafftdir.libexec' as an importable package[^1],
2025-06-08T07:51:30,769           but it is absent from setuptools' `packages` configuration.

2025-06-08T07:51:30,770           This leads to an ambiguous overall configuration. If you want to distribute this
2025-06-08T07:51:30,771           package, please make sure that 'abutils.binaries.mafft_darwin.mafftdir.libexec' is explicitly added
2025-06-08T07:51:30,772           to the `packages` configuration field.

2025-06-08T07:51:30,773           Alternatively, you can also rely on setuptools' discovery methods
2025-06-08T07:51:30,774           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-06-08T07:51:30,774           instead of `find_packages(...)`/`find:`).

2025-06-08T07:51:30,775           You can read more about "package discovery" on setuptools documentation page:

2025-06-08T07:51:30,776           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-06-08T07:51:30,777           If you don't want 'abutils.binaries.mafft_darwin.mafftdir.libexec' to be distributed and are
2025-06-08T07:51:30,778           already explicitly excluding 'abutils.binaries.mafft_darwin.mafftdir.libexec' via
2025-06-08T07:51:30,778           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-06-08T07:51:30,778           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-06-08T07:51:30,779           combination with a more fine grained `package-data` configuration.

2025-06-08T07:51:30,780           You can read more about "package data files" on setuptools documentation page:

2025-06-08T07:51:30,781           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-06-08T07:51:30,783           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-06-08T07:51:30,783                 even if it does not contain any `.py` files.
2025-06-08T07:51:30,784                 On the other hand, currently there is no concept of package data
2025-06-08T07:51:30,785                 directory, all directories are treated like packages.
2025-06-08T07:51:30,785           ********************************************************************************

2025-06-08T07:51:30,786   !!
2025-06-08T07:51:30,787     check.warn(importable)
2025-06-08T07:51:30,787   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'abutils.binaries.mafft_linux' is absent from the `packages` configuration.
2025-06-08T07:51:30,788   !!

2025-06-08T07:51:30,789           ********************************************************************************
2025-06-08T07:51:30,790           ############################
2025-06-08T07:51:30,790           # Package would be ignored #
2025-06-08T07:51:30,791           ############################
2025-06-08T07:51:30,792           Python recognizes 'abutils.binaries.mafft_linux' as an importable package[^1],
2025-06-08T07:51:30,792           but it is absent from setuptools' `packages` configuration.

2025-06-08T07:51:30,793           This leads to an ambiguous overall configuration. If you want to distribute this
2025-06-08T07:51:30,794           package, please make sure that 'abutils.binaries.mafft_linux' is explicitly added
2025-06-08T07:51:30,795           to the `packages` configuration field.

2025-06-08T07:51:30,796           Alternatively, you can also rely on setuptools' discovery methods
2025-06-08T07:51:30,797           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-06-08T07:51:30,797           instead of `find_packages(...)`/`find:`).

2025-06-08T07:51:30,798           You can read more about "package discovery" on setuptools documentation page:

2025-06-08T07:51:30,799           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-06-08T07:51:30,800           If you don't want 'abutils.binaries.mafft_linux' to be distributed and are
2025-06-08T07:51:30,801           already explicitly excluding 'abutils.binaries.mafft_linux' via
2025-06-08T07:51:30,801           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-06-08T07:51:30,802           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-06-08T07:51:30,802           combination with a more fine grained `package-data` configuration.

2025-06-08T07:51:30,803           You can read more about "package data files" on setuptools documentation page:

2025-06-08T07:51:30,804           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-06-08T07:51:30,806           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-06-08T07:51:30,806                 even if it does not contain any `.py` files.
2025-06-08T07:51:30,807                 On the other hand, currently there is no concept of package data
2025-06-08T07:51:30,807                 directory, all directories are treated like packages.
2025-06-08T07:51:30,807           ********************************************************************************

2025-06-08T07:51:30,808   !!
2025-06-08T07:51:30,809     check.warn(importable)
2025-06-08T07:51:30,809   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'abutils.binaries.mafft_linux.mafftdir.bin' is absent from the `packages` configuration.
2025-06-08T07:51:30,810   !!

2025-06-08T07:51:30,810           ********************************************************************************
2025-06-08T07:51:30,811           ############################
2025-06-08T07:51:30,811           # Package would be ignored #
2025-06-08T07:51:30,812           ############################
2025-06-08T07:51:30,812           Python recognizes 'abutils.binaries.mafft_linux.mafftdir.bin' as an importable package[^1],
2025-06-08T07:51:30,813           but it is absent from setuptools' `packages` configuration.

2025-06-08T07:51:30,814           This leads to an ambiguous overall configuration. If you want to distribute this
2025-06-08T07:51:30,814           package, please make sure that 'abutils.binaries.mafft_linux.mafftdir.bin' is explicitly added
2025-06-08T07:51:30,815           to the `packages` configuration field.

2025-06-08T07:51:30,816           Alternatively, you can also rely on setuptools' discovery methods
2025-06-08T07:51:30,816           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-06-08T07:51:30,817           instead of `find_packages(...)`/`find:`).

2025-06-08T07:51:30,818           You can read more about "package discovery" on setuptools documentation page:

2025-06-08T07:51:30,819           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-06-08T07:51:30,820           If you don't want 'abutils.binaries.mafft_linux.mafftdir.bin' to be distributed and are
2025-06-08T07:51:30,820           already explicitly excluding 'abutils.binaries.mafft_linux.mafftdir.bin' via
2025-06-08T07:51:30,821           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-06-08T07:51:30,822           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-06-08T07:51:30,822           combination with a more fine grained `package-data` configuration.

2025-06-08T07:51:30,823           You can read more about "package data files" on setuptools documentation page:

2025-06-08T07:51:30,824           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-06-08T07:51:30,826           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-06-08T07:51:30,827                 even if it does not contain any `.py` files.
2025-06-08T07:51:30,827                 On the other hand, currently there is no concept of package data
2025-06-08T07:51:30,828                 directory, all directories are treated like packages.
2025-06-08T07:51:30,828           ********************************************************************************

2025-06-08T07:51:30,830   !!
2025-06-08T07:51:30,830     check.warn(importable)
2025-06-08T07:51:30,831   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'abutils.binaries.mafft_linux.mafftdir.libexec' is absent from the `packages` configuration.
2025-06-08T07:51:30,831   !!

2025-06-08T07:51:30,833           ********************************************************************************
2025-06-08T07:51:30,833           ############################
2025-06-08T07:51:30,834           # Package would be ignored #
2025-06-08T07:51:30,835           ############################
2025-06-08T07:51:30,835           Python recognizes 'abutils.binaries.mafft_linux.mafftdir.libexec' as an importable package[^1],
2025-06-08T07:51:30,836           but it is absent from setuptools' `packages` configuration.

2025-06-08T07:51:30,836           This leads to an ambiguous overall configuration. If you want to distribute this
2025-06-08T07:51:30,837           package, please make sure that 'abutils.binaries.mafft_linux.mafftdir.libexec' is explicitly added
2025-06-08T07:51:30,837           to the `packages` configuration field.

2025-06-08T07:51:30,838           Alternatively, you can also rely on setuptools' discovery methods
2025-06-08T07:51:30,839           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-06-08T07:51:30,839           instead of `find_packages(...)`/`find:`).

2025-06-08T07:51:30,840           You can read more about "package discovery" on setuptools documentation page:

2025-06-08T07:51:30,841           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-06-08T07:51:30,842           If you don't want 'abutils.binaries.mafft_linux.mafftdir.libexec' to be distributed and are
2025-06-08T07:51:30,843           already explicitly excluding 'abutils.binaries.mafft_linux.mafftdir.libexec' via
2025-06-08T07:51:30,843           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-06-08T07:51:30,844           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-06-08T07:51:30,844           combination with a more fine grained `package-data` configuration.

2025-06-08T07:51:30,846           You can read more about "package data files" on setuptools documentation page:

2025-06-08T07:51:30,847           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-06-08T07:51:30,848           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-06-08T07:51:30,849                 even if it does not contain any `.py` files.
2025-06-08T07:51:30,849                 On the other hand, currently there is no concept of package data
2025-06-08T07:51:30,850                 directory, all directories are treated like packages.
2025-06-08T07:51:30,850           ********************************************************************************

2025-06-08T07:51:30,852   !!
2025-06-08T07:51:30,852     check.warn(importable)
2025-06-08T07:51:30,853   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'abutils.utils.matrices' is absent from the `packages` configuration.
2025-06-08T07:51:30,853   !!

2025-06-08T07:51:30,854           ********************************************************************************
2025-06-08T07:51:30,855           ############################
2025-06-08T07:51:30,856           # Package would be ignored #
2025-06-08T07:51:30,856           ############################
2025-06-08T07:51:30,867           Python recognizes 'abutils.utils.matrices' as an importable package[^1],
2025-06-08T07:51:30,893           but it is absent from setuptools' `packages` configuration.

2025-06-08T07:51:30,949           This leads to an ambiguous overall configuration. If you want to distribute this
2025-06-08T07:51:30,951           package, please make sure that 'abutils.utils.matrices' is explicitly added
2025-06-08T07:51:30,953           to the `packages` configuration field.

2025-06-08T07:51:30,966           Alternatively, you can also rely on setuptools' discovery methods
2025-06-08T07:51:30,967           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-06-08T07:51:30,967           instead of `find_packages(...)`/`find:`).

2025-06-08T07:51:30,968           You can read more about "package discovery" on setuptools documentation page:

2025-06-08T07:51:30,970           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-06-08T07:51:30,970           If you don't want 'abutils.utils.matrices' to be distributed and are
2025-06-08T07:51:30,971           already explicitly excluding 'abutils.utils.matrices' via
2025-06-08T07:51:30,971           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-06-08T07:51:30,971           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-06-08T07:51:30,972           combination with a more fine grained `package-data` configuration.

2025-06-08T07:51:30,973           You can read more about "package data files" on setuptools documentation page:

2025-06-08T07:51:30,973           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-06-08T07:51:30,975           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-06-08T07:51:30,976                 even if it does not contain any `.py` files.
2025-06-08T07:51:30,977                 On the other hand, currently there is no concept of package data
2025-06-08T07:51:30,978                 directory, all directories are treated like packages.
2025-06-08T07:51:30,979           ********************************************************************************

2025-06-08T07:51:30,980   !!
2025-06-08T07:51:30,980     check.warn(importable)
2025-06-08T07:51:30,986   creating build/lib/abutils/binaries
2025-06-08T07:51:30,988   copying abutils/binaries/cdhit_darwin_amd64 -> build/lib/abutils/binaries
2025-06-08T07:51:30,988   copying abutils/binaries/cdhit_darwin_arm64 -> build/lib/abutils/binaries
2025-06-08T07:51:30,989   copying abutils/binaries/cdhit_linux_amd64 -> build/lib/abutils/binaries
2025-06-08T07:51:30,990   copying abutils/binaries/fastp_darwin -> build/lib/abutils/binaries
2025-06-08T07:51:30,993   copying abutils/binaries/fastp_linux -> build/lib/abutils/binaries
2025-06-08T07:51:30,996   copying abutils/binaries/fasttree_darwin_amd64 -> build/lib/abutils/binaries
2025-06-08T07:51:30,997   copying abutils/binaries/fasttree_darwin_arm64 -> build/lib/abutils/binaries
2025-06-08T07:51:30,998   copying abutils/binaries/fasttree_linux_amd64 -> build/lib/abutils/binaries
2025-06-08T07:51:30,999   copying abutils/binaries/minimap2_darwin_arm64 -> build/lib/abutils/binaries
2025-06-08T07:51:31,005   copying abutils/binaries/minimap2_linux_amd64 -> build/lib/abutils/binaries
2025-06-08T07:51:31,026   copying abutils/binaries/mmseqs_darwin_amd64 -> build/lib/abutils/binaries
2025-06-08T07:51:31,137   copying abutils/binaries/mmseqs_darwin_arm64 -> build/lib/abutils/binaries
2025-06-08T07:51:31,685   copying abutils/binaries/mmseqs_linux_amd64 -> build/lib/abutils/binaries
2025-06-08T07:51:33,592   copying abutils/binaries/muscle3_darwin -> build/lib/abutils/binaries
2025-06-08T07:51:33,601   copying abutils/binaries/muscle3_linux -> build/lib/abutils/binaries
2025-06-08T07:51:33,609   copying abutils/binaries/muscle_darwin_amd64 -> build/lib/abutils/binaries
2025-06-08T07:51:33,634   copying abutils/binaries/muscle_darwin_arm64 -> build/lib/abutils/binaries
2025-06-08T07:51:33,653   copying abutils/binaries/muscle_linux_amd64 -> build/lib/abutils/binaries
2025-06-08T07:51:33,699   copying abutils/binaries/sickle_darwin_arm64 -> build/lib/abutils/binaries
2025-06-08T07:51:33,703   copying abutils/binaries/sickle_linux_amd64 -> build/lib/abutils/binaries
2025-06-08T07:51:33,706   copying abutils/binaries/vsearch_darwin_amd64 -> build/lib/abutils/binaries
2025-06-08T07:51:33,719   copying abutils/binaries/vsearch_darwin_arm64 -> build/lib/abutils/binaries
2025-06-08T07:51:33,731   copying abutils/binaries/vsearch_linux_amd64 -> build/lib/abutils/binaries
2025-06-08T07:51:33,774   creating build/lib/abutils/binaries/mafft_darwin
2025-06-08T07:51:33,776   copying abutils/binaries/mafft_darwin/mafft.bat -> build/lib/abutils/binaries/mafft_darwin
2025-06-08T07:51:33,779   creating build/lib/abutils/binaries/mafft_darwin/mafftdir/bin
2025-06-08T07:51:33,781   copying abutils/binaries/mafft_darwin/mafftdir/bin/mafft -> build/lib/abutils/binaries/mafft_darwin/mafftdir/bin
2025-06-08T07:51:33,786   creating build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:33,787   copying abutils/binaries/mafft_darwin/mafftdir/libexec/addsingle -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:33,819   copying abutils/binaries/mafft_darwin/mafftdir/libexec/contrafoldwrap -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:33,834   copying abutils/binaries/mafft_darwin/mafftdir/libexec/countlen -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:33,843   copying abutils/binaries/mafft_darwin/mafftdir/libexec/dash_client -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:34,044   copying abutils/binaries/mafft_darwin/mafftdir/libexec/disttbfast -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:34,073   copying abutils/binaries/mafft_darwin/mafftdir/libexec/dndblast -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:34,090   copying abutils/binaries/mafft_darwin/mafftdir/libexec/dndfast7 -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:34,108   copying abutils/binaries/mafft_darwin/mafftdir/libexec/dndpre -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:34,125   copying abutils/binaries/mafft_darwin/mafftdir/libexec/dvtditr -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:34,155   copying abutils/binaries/mafft_darwin/mafftdir/libexec/f2cl -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:34,169   copying abutils/binaries/mafft_darwin/mafftdir/libexec/filter -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:34,184   copying abutils/binaries/mafft_darwin/mafftdir/libexec/getlag -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:34,218   copying abutils/binaries/mafft_darwin/mafftdir/libexec/hex2maffttext -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:34,224   copying abutils/binaries/mafft_darwin/mafftdir/libexec/mafft-distance -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:34,243   copying abutils/binaries/mafft_darwin/mafftdir/libexec/mafft-homologs.1 -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:34,246   copying abutils/binaries/mafft_darwin/mafftdir/libexec/mafft-profile -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:34,276   copying abutils/binaries/mafft_darwin/mafftdir/libexec/mafft.1 -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:34,279   copying abutils/binaries/mafft_darwin/mafftdir/libexec/mafftash_premafft.pl -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:34,281   copying abutils/binaries/mafft_darwin/mafftdir/libexec/maffttext2hex -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:34,286   copying abutils/binaries/mafft_darwin/mafftdir/libexec/makedirectionlist -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:34,315   copying abutils/binaries/mafft_darwin/mafftdir/libexec/mccaskillwrap -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:34,333   copying abutils/binaries/mafft_darwin/mafftdir/libexec/multi2hat3s -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:34,360   copying abutils/binaries/mafft_darwin/mafftdir/libexec/nodepair -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:34,396   copying abutils/binaries/mafft_darwin/mafftdir/libexec/pairash -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:34,421   copying abutils/binaries/mafft_darwin/mafftdir/libexec/pairlocalalign -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:34,450   copying abutils/binaries/mafft_darwin/mafftdir/libexec/regtable2seq -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:34,466   copying abutils/binaries/mafft_darwin/mafftdir/libexec/replaceu -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:34,483   copying abutils/binaries/mafft_darwin/mafftdir/libexec/restoreu -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:34,498   copying abutils/binaries/mafft_darwin/mafftdir/libexec/score -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:34,519   copying abutils/binaries/mafft_darwin/mafftdir/libexec/seekquencer_premafft.pl -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:34,522   copying abutils/binaries/mafft_darwin/mafftdir/libexec/seq2regtable -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:34,532   copying abutils/binaries/mafft_darwin/mafftdir/libexec/setcore -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:34,561   copying abutils/binaries/mafft_darwin/mafftdir/libexec/setdirection -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:34,578   copying abutils/binaries/mafft_darwin/mafftdir/libexec/sextet5 -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:34,597   copying abutils/binaries/mafft_darwin/mafftdir/libexec/splittbfast -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:34,629   copying abutils/binaries/mafft_darwin/mafftdir/libexec/tbfast -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:34,659   copying abutils/binaries/mafft_darwin/mafftdir/libexec/version -> build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:34,664   creating build/lib/abutils/binaries/mafft_linux
2025-06-08T07:51:34,665   copying abutils/binaries/mafft_linux/mafft.bat -> build/lib/abutils/binaries/mafft_linux
2025-06-08T07:51:34,668   creating build/lib/abutils/binaries/mafft_linux/mafftdir/bin
2025-06-08T07:51:34,669   copying abutils/binaries/mafft_linux/mafftdir/bin/mafft -> build/lib/abutils/binaries/mafft_linux/mafftdir/bin
2025-06-08T07:51:34,674   creating build/lib/abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:34,675   copying abutils/binaries/mafft_linux/mafftdir/libexec/addsingle -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:34,707   copying abutils/binaries/mafft_linux/mafftdir/libexec/contrafoldwrap -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:34,724   copying abutils/binaries/mafft_linux/mafftdir/libexec/countlen -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:34,741   copying abutils/binaries/mafft_linux/mafftdir/libexec/dash_alignments -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:34,746   copying abutils/binaries/mafft_linux/mafftdir/libexec/dash_client -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:34,818   copying abutils/binaries/mafft_linux/mafftdir/libexec/dash_sequences.fa -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:34,821   copying abutils/binaries/mafft_linux/mafftdir/libexec/disttbfast -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:34,846   copying abutils/binaries/mafft_linux/mafftdir/libexec/dndblast -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:34,864   copying abutils/binaries/mafft_linux/mafftdir/libexec/dndfast7 -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:34,884   copying abutils/binaries/mafft_linux/mafftdir/libexec/dndpre -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:34,905   copying abutils/binaries/mafft_linux/mafftdir/libexec/dvtditr -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:34,933   copying abutils/binaries/mafft_linux/mafftdir/libexec/f2cl -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:34,947   copying abutils/binaries/mafft_linux/mafftdir/libexec/filter -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:34,963   copying abutils/binaries/mafft_linux/mafftdir/libexec/getlag -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:34,984   copying abutils/binaries/mafft_linux/mafftdir/libexec/hat3 -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:34,986   copying abutils/binaries/mafft_linux/mafftdir/libexec/hex2maffttext -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:34,996   copying abutils/binaries/mafft_linux/mafftdir/libexec/mafft-distance -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:35,016   copying abutils/binaries/mafft_linux/mafftdir/libexec/mafft-homologs.1 -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:35,019   copying abutils/binaries/mafft_linux/mafftdir/libexec/mafft-profile -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:35,042   copying abutils/binaries/mafft_linux/mafftdir/libexec/mafft.1 -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:35,046   copying abutils/binaries/mafft_linux/mafftdir/libexec/mafftash_premafft.pl -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:35,049   copying abutils/binaries/mafft_linux/mafftdir/libexec/maffttext2hex -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:35,063   copying abutils/binaries/mafft_linux/mafftdir/libexec/makedirectionlist -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:35,089   copying abutils/binaries/mafft_linux/mafftdir/libexec/mccaskillwrap -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:35,109   copying abutils/binaries/mafft_linux/mafftdir/libexec/multi2hat3s -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:35,138   copying abutils/binaries/mafft_linux/mafftdir/libexec/nodepair -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:35,168   copying abutils/binaries/mafft_linux/mafftdir/libexec/pairash -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:35,194   copying abutils/binaries/mafft_linux/mafftdir/libexec/pairlocalalign -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:35,225   copying abutils/binaries/mafft_linux/mafftdir/libexec/regtable2seq -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:35,244   copying abutils/binaries/mafft_linux/mafftdir/libexec/replaceu -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:35,274   copying abutils/binaries/mafft_linux/mafftdir/libexec/restoreu -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:35,318   copying abutils/binaries/mafft_linux/mafftdir/libexec/score -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:35,361   copying abutils/binaries/mafft_linux/mafftdir/libexec/seekquencer_premafft.pl -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:35,371   copying abutils/binaries/mafft_linux/mafftdir/libexec/seq2regtable -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:35,401   copying abutils/binaries/mafft_linux/mafftdir/libexec/setcore -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:35,446   copying abutils/binaries/mafft_linux/mafftdir/libexec/setdirection -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:35,485   copying abutils/binaries/mafft_linux/mafftdir/libexec/sextet5 -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:35,528   copying abutils/binaries/mafft_linux/mafftdir/libexec/splittbfast -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:35,566   copying abutils/binaries/mafft_linux/mafftdir/libexec/tbfast -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:35,595   copying abutils/binaries/mafft_linux/mafftdir/libexec/version -> build/lib/abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:35,606   creating build/lib/abutils/utils/matrices
2025-06-08T07:51:35,607   copying abutils/utils/matrices/blosum62 -> build/lib/abutils/utils/matrices
2025-06-08T07:51:35,610   copying abutils/utils/matrices/match1mismatch0 -> build/lib/abutils/utils/matrices
2025-06-08T07:51:35,613   copying abutils/utils/matrices/match3mismatch2 -> build/lib/abutils/utils/matrices
2025-06-08T07:51:35,651   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-06-08T07:51:35,652   !!

2025-06-08T07:51:35,653           ********************************************************************************
2025-06-08T07:51:35,653           Please avoid running ``setup.py`` directly.
2025-06-08T07:51:35,654           Instead, use pypa/build, pypa/installer or other
2025-06-08T07:51:35,654           standards-based tools.

2025-06-08T07:51:35,655           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-06-08T07:51:35,655           or your builds will no longer be supported.

2025-06-08T07:51:35,656           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-06-08T07:51:35,657           ********************************************************************************

2025-06-08T07:51:35,658   !!
2025-06-08T07:51:35,658     self.initialize_options()
2025-06-08T07:51:35,680   installing to build/bdist.linux-armv7l/wheel
2025-06-08T07:51:35,681   running install
2025-06-08T07:51:35,705   running install_lib
2025-06-08T07:51:35,732   creating build/bdist.linux-armv7l/wheel
2025-06-08T07:51:35,734   creating build/bdist.linux-armv7l/wheel/abutils
2025-06-08T07:51:35,735   copying build/lib/abutils/tl.py -> build/bdist.linux-armv7l/wheel/./abutils
2025-06-08T07:51:35,737   copying build/lib/abutils/__init__.py -> build/bdist.linux-armv7l/wheel/./abutils
2025-06-08T07:51:35,739   copying build/lib/abutils/cl.py -> build/bdist.linux-armv7l/wheel/./abutils
2025-06-08T07:51:35,741   copying build/lib/abutils/pl.py -> build/bdist.linux-armv7l/wheel/./abutils
2025-06-08T07:51:35,744   creating build/bdist.linux-armv7l/wheel/abutils/binaries
2025-06-08T07:51:35,745   copying build/lib/abutils/binaries/muscle3_linux -> build/bdist.linux-armv7l/wheel/./abutils/binaries
2025-06-08T07:51:35,754   copying build/lib/abutils/binaries/cdhit_darwin_arm64 -> build/bdist.linux-armv7l/wheel/./abutils/binaries
2025-06-08T07:51:35,760   copying build/lib/abutils/binaries/fastp_linux -> build/bdist.linux-armv7l/wheel/./abutils/binaries
2025-06-08T07:51:35,928   copying build/lib/abutils/binaries/fastp_darwin -> build/bdist.linux-armv7l/wheel/./abutils/binaries
2025-06-08T07:51:35,942   copying build/lib/abutils/binaries/muscle_linux_amd64 -> build/bdist.linux-armv7l/wheel/./abutils/binaries
2025-06-08T07:51:35,993   copying build/lib/abutils/binaries/fasttree_darwin_arm64 -> build/bdist.linux-armv7l/wheel/./abutils/binaries
2025-06-08T07:51:36,003   creating build/bdist.linux-armv7l/wheel/abutils/binaries/mafft_linux
2025-06-08T07:51:36,005   creating build/bdist.linux-armv7l/wheel/abutils/binaries/mafft_linux/mafftdir
2025-06-08T07:51:36,007   creating build/bdist.linux-armv7l/wheel/abutils/binaries/mafft_linux/mafftdir/bin
2025-06-08T07:51:36,008   copying build/lib/abutils/binaries/mafft_linux/mafftdir/bin/mafft -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/bin
2025-06-08T07:51:36,013   creating build/bdist.linux-armv7l/wheel/abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:36,014   copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/dndblast -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:36,034   copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/seekquencer_premafft.pl -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:36,037   copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/contrafoldwrap -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:36,060   copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/addsingle -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:36,094   copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/mafft-distance -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:36,111   copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/dndfast7 -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:36,129   copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/countlen -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:36,144   copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/pairlocalalign -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:36,173   copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/mafftash_premafft.pl -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:36,175   copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/pairash -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:36,195   copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/score -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:36,213   copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/mafft.1 -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:36,216   copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/f2cl -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:36,232   copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/seq2regtable -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:36,248   copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/regtable2seq -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:36,264   copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/sextet5 -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:36,282   copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/getlag -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:36,305   copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/makedirectionlist -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:36,329   copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/restoreu -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:36,346   copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/multi2hat3s -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:36,364   copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/dash_sequences.fa -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:36,367   copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/tbfast -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:36,392   copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/filter -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:36,410   copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/maffttext2hex -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:36,423   copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/hat3 -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:36,425   copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/hex2maffttext -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:36,438   copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/setcore -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:36,466   copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/setdirection -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:36,486   copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/splittbfast -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:36,510   copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/mafft-profile -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:36,533   copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/disttbfast -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:36,559   copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/nodepair -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:36,594   copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/dndpre -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:36,613   copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/dash_alignments -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:36,618   copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/dash_client -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:36,686   copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/version -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:36,699   copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/mccaskillwrap -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:36,718   copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/mafft-homologs.1 -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:36,720   copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/replaceu -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:36,740   copying build/lib/abutils/binaries/mafft_linux/mafftdir/libexec/dvtditr -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux/mafftdir/libexec
2025-06-08T07:51:36,768   copying build/lib/abutils/binaries/mafft_linux/mafft.bat -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_linux
2025-06-08T07:51:36,770   copying build/lib/abutils/binaries/cdhit_linux_amd64 -> build/bdist.linux-armv7l/wheel/./abutils/binaries
2025-06-08T07:51:36,776   copying build/lib/abutils/binaries/muscle_darwin_arm64 -> build/bdist.linux-armv7l/wheel/./abutils/binaries
2025-06-08T07:51:36,796   copying build/lib/abutils/binaries/minimap2_darwin_arm64 -> build/bdist.linux-armv7l/wheel/./abutils/binaries
2025-06-08T07:51:36,801   copying build/lib/abutils/binaries/mmseqs_linux_amd64 -> build/bdist.linux-armv7l/wheel/./abutils/binaries
2025-06-08T07:51:37,844   copying build/lib/abutils/binaries/fasttree_linux_amd64 -> build/bdist.linux-armv7l/wheel/./abutils/binaries
2025-06-08T07:51:37,851   copying build/lib/abutils/binaries/sickle_linux_amd64 -> build/bdist.linux-armv7l/wheel/./abutils/binaries
2025-06-08T07:51:37,854   copying build/lib/abutils/binaries/cdhit_darwin_amd64 -> build/bdist.linux-armv7l/wheel/./abutils/binaries
2025-06-08T07:51:37,859   copying build/lib/abutils/binaries/minimap2_linux_amd64 -> build/bdist.linux-armv7l/wheel/./abutils/binaries
2025-06-08T07:51:37,888   copying build/lib/abutils/binaries/sickle_darwin_arm64 -> build/bdist.linux-armv7l/wheel/./abutils/binaries
2025-06-08T07:51:37,891   copying build/lib/abutils/binaries/mmseqs_darwin_amd64 -> build/bdist.linux-armv7l/wheel/./abutils/binaries
2025-06-08T07:51:37,998   copying build/lib/abutils/binaries/fasttree_darwin_amd64 -> build/bdist.linux-armv7l/wheel/./abutils/binaries
2025-06-08T07:51:38,006   creating build/bdist.linux-armv7l/wheel/abutils/binaries/mafft_darwin
2025-06-08T07:51:38,008   creating build/bdist.linux-armv7l/wheel/abutils/binaries/mafft_darwin/mafftdir
2025-06-08T07:51:38,010   creating build/bdist.linux-armv7l/wheel/abutils/binaries/mafft_darwin/mafftdir/bin
2025-06-08T07:51:38,012   copying build/lib/abutils/binaries/mafft_darwin/mafftdir/bin/mafft -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/bin
2025-06-08T07:51:38,018   creating build/bdist.linux-armv7l/wheel/abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:38,019   copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/dndblast -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:38,038   copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/seekquencer_premafft.pl -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:38,041   copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/contrafoldwrap -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:38,065   copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/addsingle -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:38,103   copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/mafft-distance -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:38,124   copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/dndfast7 -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:38,144   copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/countlen -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:38,153   copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/pairlocalalign -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:38,184   copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/mafftash_premafft.pl -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:38,187   copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/pairash -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:38,216   copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/score -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:38,233   copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/mafft.1 -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:38,236   copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/f2cl -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:38,248   copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/seq2regtable -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:38,258   copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/regtable2seq -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:38,275   copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/sextet5 -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:38,297   copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/getlag -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:38,332   copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/makedirectionlist -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:38,367   copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/restoreu -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:38,381   copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/multi2hat3s -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:38,397   copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/tbfast -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:38,426   copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/filter -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:38,442   copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/maffttext2hex -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:38,447   copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/hex2maffttext -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:38,452   copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/setcore -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:38,482   copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/setdirection -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:38,500   copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/splittbfast -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:38,536   copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/mafft-profile -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:38,564   copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/disttbfast -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:38,595   copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/nodepair -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:38,625   copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/dndpre -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:38,641   copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/dash_client -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:38,843   copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/version -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:38,847   copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/mccaskillwrap -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:38,866   copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/mafft-homologs.1 -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:38,869   copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/replaceu -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:38,887   copying build/lib/abutils/binaries/mafft_darwin/mafftdir/libexec/dvtditr -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin/mafftdir/libexec
2025-06-08T07:51:38,922   copying build/lib/abutils/binaries/mafft_darwin/mafft.bat -> build/bdist.linux-armv7l/wheel/./abutils/binaries/mafft_darwin
2025-06-08T07:51:38,924   copying build/lib/abutils/binaries/vsearch_darwin_arm64 -> build/bdist.linux-armv7l/wheel/./abutils/binaries
2025-06-08T07:51:38,935   copying build/lib/abutils/binaries/mmseqs_darwin_arm64 -> build/bdist.linux-armv7l/wheel/./abutils/binaries
2025-06-08T07:51:39,500   copying build/lib/abutils/binaries/vsearch_darwin_amd64 -> build/bdist.linux-armv7l/wheel/./abutils/binaries
2025-06-08T07:51:39,510   copying build/lib/abutils/binaries/muscle3_darwin -> build/bdist.linux-armv7l/wheel/./abutils/binaries
2025-06-08T07:51:39,521   copying build/lib/abutils/binaries/vsearch_linux_amd64 -> build/bdist.linux-armv7l/wheel/./abutils/binaries
2025-06-08T07:51:39,557   copying build/lib/abutils/binaries/muscle_darwin_amd64 -> build/bdist.linux-armv7l/wheel/./abutils/binaries
2025-06-08T07:51:39,578   creating build/bdist.linux-armv7l/wheel/abutils/tools
2025-06-08T07:51:39,579   copying build/lib/abutils/tools/cloning.py -> build/bdist.linux-armv7l/wheel/./abutils/tools
2025-06-08T07:51:39,582   copying build/lib/abutils/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./abutils/tools
2025-06-08T07:51:39,583   copying build/lib/abutils/tools/phylo.py -> build/bdist.linux-armv7l/wheel/./abutils/tools
2025-06-08T07:51:39,587   copying build/lib/abutils/tools/alignment.py -> build/bdist.linux-armv7l/wheel/./abutils/tools
2025-06-08T07:51:39,591   copying build/lib/abutils/tools/similarity.py -> build/bdist.linux-armv7l/wheel/./abutils/tools
2025-06-08T07:51:39,594   copying build/lib/abutils/tools/anarci.py -> build/bdist.linux-armv7l/wheel/./abutils/tools
2025-06-08T07:51:39,596   copying build/lib/abutils/tools/cluster.py -> build/bdist.linux-armv7l/wheel/./abutils/tools
2025-06-08T07:51:39,599   copying build/lib/abutils/tools/clonify.py -> build/bdist.linux-armv7l/wheel/./abutils/tools
2025-06-08T07:51:39,602   copying build/lib/abutils/tools/preprocessing.py -> build/bdist.linux-armv7l/wheel/./abutils/tools
2025-06-08T07:51:39,605   copying build/lib/abutils/tools/log.py -> build/bdist.linux-armv7l/wheel/./abutils/tools
2025-06-08T07:51:39,608   copying build/lib/abutils/tools/search.py -> build/bdist.linux-armv7l/wheel/./abutils/tools
2025-06-08T07:51:39,611   copying build/lib/abutils/bin.py -> build/bdist.linux-armv7l/wheel/./abutils
2025-06-08T07:51:39,613   copying build/lib/abutils/version.py -> build/bdist.linux-armv7l/wheel/./abutils
2025-06-08T07:51:39,616   creating build/bdist.linux-armv7l/wheel/abutils/preprocess
2025-06-08T07:51:39,618   copying build/lib/abutils/preprocess/__init__.py -> build/bdist.linux-armv7l/wheel/./abutils/preprocess
2025-06-08T07:51:39,620   copying build/lib/abutils/preprocess/preprocess.py -> build/bdist.linux-armv7l/wheel/./abutils/preprocess
2025-06-08T07:51:39,623   copying build/lib/abutils/pp.py -> build/bdist.linux-armv7l/wheel/./abutils
2025-06-08T07:51:39,626   creating build/bdist.linux-armv7l/wheel/abutils/core
2025-06-08T07:51:39,627   copying build/lib/abutils/core/lineage.py -> build/bdist.linux-armv7l/wheel/./abutils/core
2025-06-08T07:51:39,631   copying build/lib/abutils/core/__init__.py -> build/bdist.linux-armv7l/wheel/./abutils/core
2025-06-08T07:51:39,633   copying build/lib/abutils/core/sequence.py -> build/bdist.linux-armv7l/wheel/./abutils/core
2025-06-08T07:51:39,637   copying build/lib/abutils/core/pair.py -> build/bdist.linux-armv7l/wheel/./abutils/core
2025-06-08T07:51:39,641   creating build/bdist.linux-armv7l/wheel/abutils/tests
2025-06-08T07:51:39,642   copying build/lib/abutils/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./abutils/tests
2025-06-08T07:51:39,644   copying build/lib/abutils/tests/test_cloning.py -> build/bdist.linux-armv7l/wheel/./abutils/tests
2025-06-08T07:51:39,647   copying build/lib/abutils/tests/test_sequence.py -> build/bdist.linux-armv7l/wheel/./abutils/tests
2025-06-08T07:51:39,649   copying build/lib/abutils/tests/test_preprocessing.py -> build/bdist.linux-armv7l/wheel/./abutils/tests
2025-06-08T07:51:39,652   copying build/lib/abutils/tests/test_cluster.py -> build/bdist.linux-armv7l/wheel/./abutils/tests
2025-06-08T07:51:39,655   copying build/lib/abutils/tests/test_utilities.py -> build/bdist.linux-armv7l/wheel/./abutils/tests
2025-06-08T07:51:39,657   copying build/lib/abutils/tests/test_phylo.py -> build/bdist.linux-armv7l/wheel/./abutils/tests
2025-06-08T07:51:39,659   copying build/lib/abutils/tests/test_alignment.py -> build/bdist.linux-armv7l/wheel/./abutils/tests
2025-06-08T07:51:39,662   copying build/lib/abutils/tests/test_pair.py -> build/bdist.linux-armv7l/wheel/./abutils/tests
2025-06-08T07:51:39,665   copying build/lib/abutils/tests/test_color.py -> build/bdist.linux-armv7l/wheel/./abutils/tests
2025-06-08T07:51:39,668   copying build/lib/abutils/tests/test_clonify.py -> build/bdist.linux-armv7l/wheel/./abutils/tests
2025-06-08T07:51:39,670   copying build/lib/abutils/log.py -> build/bdist.linux-armv7l/wheel/./abutils
2025-06-08T07:51:39,673   creating build/bdist.linux-armv7l/wheel/abutils/utils
2025-06-08T07:51:39,674   copying build/lib/abutils/utils/color.py -> build/bdist.linux-armv7l/wheel/./abutils/utils
2025-06-08T07:51:39,677   copying build/lib/abutils/utils/codons.py -> build/bdist.linux-armv7l/wheel/./abutils/utils
2025-06-08T07:51:39,679   copying build/lib/abutils/utils/click.py -> build/bdist.linux-armv7l/wheel/./abutils/utils
2025-06-08T07:51:39,681   copying build/lib/abutils/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./abutils/utils
2025-06-08T07:51:39,683   copying build/lib/abutils/utils/mongodb.py -> build/bdist.linux-armv7l/wheel/./abutils/utils
2025-06-08T07:51:39,686   copying build/lib/abutils/utils/database.py -> build/bdist.linux-armv7l/wheel/./abutils/utils
2025-06-08T07:51:39,689   copying build/lib/abutils/utils/convert.py -> build/bdist.linux-armv7l/wheel/./abutils/utils
2025-06-08T07:51:39,692   creating build/bdist.linux-armv7l/wheel/abutils/utils/matrices
2025-06-08T07:51:39,693   copying build/lib/abutils/utils/matrices/match1mismatch0 -> build/bdist.linux-armv7l/wheel/./abutils/utils/matrices
2025-06-08T07:51:39,695   copying build/lib/abutils/utils/matrices/blosum62 -> build/bdist.linux-armv7l/wheel/./abutils/utils/matrices
2025-06-08T07:51:39,697   copying build/lib/abutils/utils/matrices/match3mismatch2 -> build/bdist.linux-armv7l/wheel/./abutils/utils/matrices
2025-06-08T07:51:39,699   copying build/lib/abutils/utils/alignment.py -> build/bdist.linux-armv7l/wheel/./abutils/utils
2025-06-08T07:51:39,703   copying build/lib/abutils/utils/seqio.py -> build/bdist.linux-armv7l/wheel/./abutils/utils
2025-06-08T07:51:39,706   copying build/lib/abutils/utils/circos.py -> build/bdist.linux-armv7l/wheel/./abutils/utils
2025-06-08T07:51:39,708   copying build/lib/abutils/utils/utilities.py -> build/bdist.linux-armv7l/wheel/./abutils/utils
2025-06-08T07:51:39,710   copying build/lib/abutils/utils/ssh_tunnel.py -> build/bdist.linux-armv7l/wheel/./abutils/utils
2025-06-08T07:51:39,712   copying build/lib/abutils/utils/cluster.py -> build/bdist.linux-armv7l/wheel/./abutils/utils
2025-06-08T07:51:39,715   copying build/lib/abutils/utils/germlines.py -> build/bdist.linux-armv7l/wheel/./abutils/utils
2025-06-08T07:51:39,718   copying build/lib/abutils/utils/path.py -> build/bdist.linux-armv7l/wheel/./abutils/utils
2025-06-08T07:51:39,720   copying build/lib/abutils/utils/progbar.py -> build/bdist.linux-armv7l/wheel/./abutils/utils
2025-06-08T07:51:39,722   copying build/lib/abutils/utils/s3.py -> build/bdist.linux-armv7l/wheel/./abutils/utils
2025-06-08T07:51:39,725   copying build/lib/abutils/utils/phylogeny.py -> build/bdist.linux-armv7l/wheel/./abutils/utils
2025-06-08T07:51:39,728   copying build/lib/abutils/utils/log.py -> build/bdist.linux-armv7l/wheel/./abutils/utils
2025-06-08T07:51:39,731   copying build/lib/abutils/utils/jobs.py -> build/bdist.linux-armv7l/wheel/./abutils/utils
2025-06-08T07:51:39,733   copying build/lib/abutils/utils/decorators.py -> build/bdist.linux-armv7l/wheel/./abutils/utils
2025-06-08T07:51:39,736   creating build/bdist.linux-armv7l/wheel/abutils/plots
2025-06-08T07:51:39,738   copying build/lib/abutils/plots/ridge.py -> build/bdist.linux-armv7l/wheel/./abutils/plots
2025-06-08T07:51:39,741   creating build/bdist.linux-armv7l/wheel/abutils/plots/mixins
2025-06-08T07:51:39,742   copying build/lib/abutils/plots/mixins/hue.py -> build/bdist.linux-armv7l/wheel/./abutils/plots/mixins
2025-06-08T07:51:39,745   copying build/lib/abutils/plots/mixins/__init__.py -> build/bdist.linux-armv7l/wheel/./abutils/plots/mixins
2025-06-08T07:51:39,747   copying build/lib/abutils/plots/lineage.py -> build/bdist.linux-armv7l/wheel/./abutils/plots
2025-06-08T07:51:39,750   copying build/lib/abutils/plots/donut.py -> build/bdist.linux-armv7l/wheel/./abutils/plots
2025-06-08T07:51:39,754   copying build/lib/abutils/plots/__init__.py -> build/bdist.linux-armv7l/wheel/./abutils/plots
2025-06-08T07:51:39,756   copying build/lib/abutils/plots/bar.py -> build/bdist.linux-armv7l/wheel/./abutils/plots
2025-06-08T07:51:39,759   copying build/lib/abutils/plots/summary.py -> build/bdist.linux-armv7l/wheel/./abutils/plots
2025-06-08T07:51:39,762   copying build/lib/abutils/plots/heatmap.py -> build/bdist.linux-armv7l/wheel/./abutils/plots
2025-06-08T07:51:39,766   copying build/lib/abutils/plots/scatter.py -> build/bdist.linux-armv7l/wheel/./abutils/plots
2025-06-08T07:51:39,769   copying build/lib/abutils/plots/kde.py -> build/bdist.linux-armv7l/wheel/./abutils/plots
2025-06-08T07:51:39,774   copying build/lib/abutils/plots/utils.py -> build/bdist.linux-armv7l/wheel/./abutils/plots
2025-06-08T07:51:39,777   copying build/lib/abutils/plots/base.py -> build/bdist.linux-armv7l/wheel/./abutils/plots
2025-06-08T07:51:39,779   copying build/lib/abutils/plots/data.py -> build/bdist.linux-armv7l/wheel/./abutils/plots
2025-06-08T07:51:39,783   copying build/lib/abutils/plots/ring.py -> build/bdist.linux-armv7l/wheel/./abutils/plots
2025-06-08T07:51:39,786   creating build/bdist.linux-armv7l/wheel/abutils/plots/models
2025-06-08T07:51:39,788   copying build/lib/abutils/plots/models/__init__.py -> build/bdist.linux-armv7l/wheel/./abutils/plots/models
2025-06-08T07:51:39,790   copying build/lib/abutils/plots/models/data.py -> build/bdist.linux-armv7l/wheel/./abutils/plots/models
2025-06-08T07:51:39,793   copying build/lib/abutils/io.py -> build/bdist.linux-armv7l/wheel/./abutils
2025-06-08T07:51:39,797   running install_egg_info
2025-06-08T07:51:39,837   Copying abutils.egg-info to build/bdist.linux-armv7l/wheel/./abutils-0.5.3-py3.11.egg-info
2025-06-08T07:51:39,848   running install_scripts
2025-06-08T07:51:39,861   creating build/bdist.linux-armv7l/wheel/abutils-0.5.3.dist-info/WHEEL
2025-06-08T07:51:39,864   creating '/tmp/pip-wheel-s3rqpfcq/abutils-0.5.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-06-08T07:51:39,867   adding 'abutils/__init__.py'
2025-06-08T07:51:39,870   adding 'abutils/bin.py'
2025-06-08T07:51:39,872   adding 'abutils/cl.py'
2025-06-08T07:51:39,878   adding 'abutils/io.py'
2025-06-08T07:51:39,880   adding 'abutils/log.py'
2025-06-08T07:51:39,882   adding 'abutils/pl.py'
2025-06-08T07:51:39,884   adding 'abutils/pp.py'
2025-06-08T07:51:39,886   adding 'abutils/tl.py'
2025-06-08T07:51:39,887   adding 'abutils/version.py'
2025-06-08T07:51:39,919   adding 'abutils/binaries/cdhit_darwin_amd64'
2025-06-08T07:51:39,948   adding 'abutils/binaries/cdhit_darwin_arm64'
2025-06-08T07:51:39,973   adding 'abutils/binaries/cdhit_linux_amd64'
2025-06-08T07:51:40,053   adding 'abutils/binaries/fastp_darwin'
2025-06-08T07:51:41,743   adding 'abutils/binaries/fastp_linux'
2025-06-08T07:51:41,852   adding 'abutils/binaries/fasttree_darwin_amd64'
2025-06-08T07:51:41,913   adding 'abutils/binaries/fasttree_darwin_arm64'
2025-06-08T07:51:41,983   adding 'abutils/binaries/fasttree_linux_amd64'
2025-06-08T07:51:42,014   adding 'abutils/binaries/minimap2_darwin_arm64'
2025-06-08T07:51:42,191   adding 'abutils/binaries/minimap2_linux_amd64'
2025-06-08T07:51:43,313   adding 'abutils/binaries/mmseqs_darwin_amd64'
2025-06-08T07:51:53,057   adding 'abutils/binaries/mmseqs_darwin_arm64'
2025-06-08T07:52:06,794   adding 'abutils/binaries/mmseqs_linux_amd64'
2025-06-08T07:52:07,333   adding 'abutils/binaries/muscle3_darwin'
2025-06-08T07:52:07,396   adding 'abutils/binaries/muscle3_linux'
2025-06-08T07:52:07,575   adding 'abutils/binaries/muscle_darwin_amd64'
2025-06-08T07:52:07,732   adding 'abutils/binaries/muscle_darwin_arm64'
2025-06-08T07:52:08,246   adding 'abutils/binaries/muscle_linux_amd64'
2025-06-08T07:52:08,268   adding 'abutils/binaries/sickle_darwin_arm64'
2025-06-08T07:52:08,274   adding 'abutils/binaries/sickle_linux_amd64'
2025-06-08T07:52:08,350   adding 'abutils/binaries/vsearch_darwin_amd64'
2025-06-08T07:52:08,418   adding 'abutils/binaries/vsearch_darwin_arm64'
2025-06-08T07:52:08,734   adding 'abutils/binaries/vsearch_linux_amd64'
2025-06-08T07:52:08,749   adding 'abutils/binaries/mafft_darwin/mafft.bat'
2025-06-08T07:52:08,760   adding 'abutils/binaries/mafft_darwin/mafftdir/bin/mafft'
2025-06-08T07:52:09,091   adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/addsingle'
2025-06-08T07:52:09,275   adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/contrafoldwrap'
2025-06-08T07:52:09,323   adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/countlen'
2025-06-08T07:52:11,646   adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/dash_client'
2025-06-08T07:52:12,039   adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/disttbfast'
2025-06-08T07:52:12,203   adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/dndblast'
2025-06-08T07:52:12,364   adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/dndfast7'
2025-06-08T07:52:12,519   adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/dndpre'
2025-06-08T07:52:12,837   adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/dvtditr'
2025-06-08T07:52:12,914   adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/f2cl'
2025-06-08T07:52:13,041   adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/filter'
2025-06-08T07:52:13,324   adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/getlag'
2025-06-08T07:52:13,340   adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/hex2maffttext'
2025-06-08T07:52:13,494   adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/mafft-distance'
2025-06-08T07:52:13,502   adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/mafft-homologs.1'
2025-06-08T07:52:13,785   adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/mafft-profile'
2025-06-08T07:52:13,801   adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/mafft.1'
2025-06-08T07:52:13,829   adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/mafftash_premafft.pl'
2025-06-08T07:52:13,838   adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/maffttext2hex'
2025-06-08T07:52:14,315   adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/makedirectionlist'
2025-06-08T07:52:14,474   adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/mccaskillwrap'
2025-06-08T07:52:14,640   adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/multi2hat3s'
2025-06-08T07:52:14,955   adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/nodepair'
2025-06-08T07:52:15,251   adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/pairash'
2025-06-08T07:52:15,556   adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/pairlocalalign'
2025-06-08T07:52:15,691   adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/regtable2seq'
2025-06-08T07:52:15,820   adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/replaceu'
2025-06-08T07:52:15,953   adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/restoreu'
2025-06-08T07:52:16,108   adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/score'
2025-06-08T07:52:16,116   adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/seekquencer_premafft.pl'
2025-06-08T07:52:16,161   adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/seq2regtable'
2025-06-08T07:52:16,441   adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/setcore'
2025-06-08T07:52:16,575   adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/setdirection'
2025-06-08T07:52:16,733   adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/sextet5'
2025-06-08T07:52:17,030   adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/splittbfast'
2025-06-08T07:52:17,371   adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/tbfast'
2025-06-08T07:52:17,387   adding 'abutils/binaries/mafft_darwin/mafftdir/libexec/version'
2025-06-08T07:52:17,390   adding 'abutils/binaries/mafft_linux/mafft.bat'
2025-06-08T07:52:17,401   adding 'abutils/binaries/mafft_linux/mafftdir/bin/mafft'
2025-06-08T07:52:17,659   adding 'abutils/binaries/mafft_linux/mafftdir/libexec/addsingle'
2025-06-08T07:52:17,841   adding 'abutils/binaries/mafft_linux/mafftdir/libexec/contrafoldwrap'
2025-06-08T07:52:17,968   adding 'abutils/binaries/mafft_linux/mafftdir/libexec/countlen'
2025-06-08T07:52:17,976   adding 'abutils/binaries/mafft_linux/mafftdir/libexec/dash_alignments'
2025-06-08T07:52:18,770   adding 'abutils/binaries/mafft_linux/mafftdir/libexec/dash_client'
2025-06-08T07:52:18,798   adding 'abutils/binaries/mafft_linux/mafftdir/libexec/dash_sequences.fa'
2025-06-08T07:52:19,058   adding 'abutils/binaries/mafft_linux/mafftdir/libexec/disttbfast'
2025-06-08T07:52:19,242   adding 'abutils/binaries/mafft_linux/mafftdir/libexec/dndblast'
2025-06-08T07:52:19,423   adding 'abutils/binaries/mafft_linux/mafftdir/libexec/dndfast7'
2025-06-08T07:52:19,604   adding 'abutils/binaries/mafft_linux/mafftdir/libexec/dndpre'
2025-06-08T07:52:19,874   adding 'abutils/binaries/mafft_linux/mafftdir/libexec/dvtditr'
2025-06-08T07:52:20,016   adding 'abutils/binaries/mafft_linux/mafftdir/libexec/f2cl'
2025-06-08T07:52:20,185   adding 'abutils/binaries/mafft_linux/mafftdir/libexec/filter'
2025-06-08T07:52:20,425   adding 'abutils/binaries/mafft_linux/mafftdir/libexec/getlag'
2025-06-08T07:52:20,434   adding 'abutils/binaries/mafft_linux/mafftdir/libexec/hat3'
2025-06-08T07:52:20,537   adding 'abutils/binaries/mafft_linux/mafftdir/libexec/hex2maffttext'
2025-06-08T07:52:20,715   adding 'abutils/binaries/mafft_linux/mafftdir/libexec/mafft-distance'
2025-06-08T07:52:20,723   adding 'abutils/binaries/mafft_linux/mafftdir/libexec/mafft-homologs.1'
2025-06-08T07:52:20,960   adding 'abutils/binaries/mafft_linux/mafftdir/libexec/mafft-profile'
2025-06-08T07:52:20,969   adding 'abutils/binaries/mafft_linux/mafftdir/libexec/mafft.1'
2025-06-08T07:52:20,972   adding 'abutils/binaries/mafft_linux/mafftdir/libexec/mafftash_premafft.pl'
2025-06-08T07:52:21,074   adding 'abutils/binaries/mafft_linux/mafftdir/libexec/maffttext2hex'
2025-06-08T07:52:21,315   adding 'abutils/binaries/mafft_linux/mafftdir/libexec/makedirectionlist'
2025-06-08T07:52:21,497   adding 'abutils/binaries/mafft_linux/mafftdir/libexec/mccaskillwrap'
2025-06-08T07:52:21,688   adding 'abutils/binaries/mafft_linux/mafftdir/libexec/multi2hat3s'
2025-06-08T07:52:21,940   adding 'abutils/binaries/mafft_linux/mafftdir/libexec/nodepair'
2025-06-08T07:52:22,187   adding 'abutils/binaries/mafft_linux/mafftdir/libexec/pairash'
2025-06-08T07:52:22,436   adding 'abutils/binaries/mafft_linux/mafftdir/libexec/pairlocalalign'
2025-06-08T07:52:22,607   adding 'abutils/binaries/mafft_linux/mafftdir/libexec/regtable2seq'
2025-06-08T07:52:22,777   adding 'abutils/binaries/mafft_linux/mafftdir/libexec/replaceu'
2025-06-08T07:52:22,947   adding 'abutils/binaries/mafft_linux/mafftdir/libexec/restoreu'
2025-06-08T07:52:23,125   adding 'abutils/binaries/mafft_linux/mafftdir/libexec/score'
2025-06-08T07:52:23,134   adding 'abutils/binaries/mafft_linux/mafftdir/libexec/seekquencer_premafft.pl'
2025-06-08T07:52:23,255   adding 'abutils/binaries/mafft_linux/mafftdir/libexec/seq2regtable'
2025-06-08T07:52:23,493   adding 'abutils/binaries/mafft_linux/mafftdir/libexec/setcore'
2025-06-08T07:52:23,664   adding 'abutils/binaries/mafft_linux/mafftdir/libexec/setdirection'
2025-06-08T07:52:23,845   adding 'abutils/binaries/mafft_linux/mafftdir/libexec/sextet5'
2025-06-08T07:52:24,090   adding 'abutils/binaries/mafft_linux/mafftdir/libexec/splittbfast'
2025-06-08T07:52:24,354   adding 'abutils/binaries/mafft_linux/mafftdir/libexec/tbfast'
2025-06-08T07:52:24,466   adding 'abutils/binaries/mafft_linux/mafftdir/libexec/version'
2025-06-08T07:52:24,471   adding 'abutils/core/__init__.py'
2025-06-08T07:52:24,478   adding 'abutils/core/lineage.py'
2025-06-08T07:52:24,484   adding 'abutils/core/pair.py'
2025-06-08T07:52:24,490   adding 'abutils/core/sequence.py'
2025-06-08T07:52:24,492   adding 'abutils/plots/__init__.py'
2025-06-08T07:52:24,495   adding 'abutils/plots/bar.py'
2025-06-08T07:52:24,496   adding 'abutils/plots/base.py'
2025-06-08T07:52:24,498   adding 'abutils/plots/data.py'
2025-06-08T07:52:24,501   adding 'abutils/plots/donut.py'
2025-06-08T07:52:24,504   adding 'abutils/plots/heatmap.py'
2025-06-08T07:52:24,510   adding 'abutils/plots/kde.py'
2025-06-08T07:52:24,512   adding 'abutils/plots/lineage.py'
2025-06-08T07:52:24,514   adding 'abutils/plots/ridge.py'
2025-06-08T07:52:24,515   adding 'abutils/plots/ring.py'
2025-06-08T07:52:24,519   adding 'abutils/plots/scatter.py'
2025-06-08T07:52:24,521   adding 'abutils/plots/summary.py'
2025-06-08T07:52:24,522   adding 'abutils/plots/utils.py'
2025-06-08T07:52:24,524   adding 'abutils/plots/mixins/__init__.py'
2025-06-08T07:52:24,525   adding 'abutils/plots/mixins/hue.py'
2025-06-08T07:52:24,526   adding 'abutils/plots/models/__init__.py'
2025-06-08T07:52:24,529   adding 'abutils/plots/models/data.py'
2025-06-08T07:52:24,531   adding 'abutils/preprocess/__init__.py'
2025-06-08T07:52:24,534   adding 'abutils/preprocess/preprocess.py'
2025-06-08T07:52:24,536   adding 'abutils/tests/__init__.py'
2025-06-08T07:52:24,538   adding 'abutils/tests/test_alignment.py'
2025-06-08T07:52:24,539   adding 'abutils/tests/test_clonify.py'
2025-06-08T07:52:24,541   adding 'abutils/tests/test_cloning.py'
2025-06-08T07:52:24,542   adding 'abutils/tests/test_cluster.py'
2025-06-08T07:52:24,544   adding 'abutils/tests/test_color.py'
2025-06-08T07:52:24,546   adding 'abutils/tests/test_pair.py'
2025-06-08T07:52:24,547   adding 'abutils/tests/test_phylo.py'
2025-06-08T07:52:24,550   adding 'abutils/tests/test_preprocessing.py'
2025-06-08T07:52:24,551   adding 'abutils/tests/test_sequence.py'
2025-06-08T07:52:24,553   adding 'abutils/tests/test_utilities.py'
2025-06-08T07:52:24,555   adding 'abutils/tools/__init__.py'
2025-06-08T07:52:24,562   adding 'abutils/tools/alignment.py'
2025-06-08T07:52:24,564   adding 'abutils/tools/anarci.py'
2025-06-08T07:52:24,568   adding 'abutils/tools/clonify.py'
2025-06-08T07:52:24,570   adding 'abutils/tools/cloning.py'
2025-06-08T07:52:24,576   adding 'abutils/tools/cluster.py'
2025-06-08T07:52:24,578   adding 'abutils/tools/log.py'
2025-06-08T07:52:24,582   adding 'abutils/tools/phylo.py'
2025-06-08T07:52:24,587   adding 'abutils/tools/preprocessing.py'
2025-06-08T07:52:24,589   adding 'abutils/tools/search.py'
2025-06-08T07:52:24,592   adding 'abutils/tools/similarity.py'
2025-06-08T07:52:24,594   adding 'abutils/utils/__init__.py'
2025-06-08T07:52:24,601   adding 'abutils/utils/alignment.py'
2025-06-08T07:52:24,603   adding 'abutils/utils/circos.py'
2025-06-08T07:52:24,604   adding 'abutils/utils/click.py'
2025-06-08T07:52:24,609   adding 'abutils/utils/cluster.py'
2025-06-08T07:52:24,610   adding 'abutils/utils/codons.py'
2025-06-08T07:52:24,612   adding 'abutils/utils/color.py'
2025-06-08T07:52:24,614   adding 'abutils/utils/convert.py'
2025-06-08T07:52:24,616   adding 'abutils/utils/database.py'
2025-06-08T07:52:24,618   adding 'abutils/utils/decorators.py'
2025-06-08T07:52:24,620   adding 'abutils/utils/germlines.py'
2025-06-08T07:52:24,621   adding 'abutils/utils/jobs.py'
2025-06-08T07:52:24,623   adding 'abutils/utils/log.py'
2025-06-08T07:52:24,625   adding 'abutils/utils/mongodb.py'
2025-06-08T07:52:24,628   adding 'abutils/utils/path.py'
2025-06-08T07:52:24,632   adding 'abutils/utils/phylogeny.py'
2025-06-08T07:52:24,634   adding 'abutils/utils/progbar.py'
2025-06-08T07:52:24,636   adding 'abutils/utils/s3.py'
2025-06-08T07:52:24,637   adding 'abutils/utils/seqio.py'
2025-06-08T07:52:24,639   adding 'abutils/utils/ssh_tunnel.py'
2025-06-08T07:52:24,641   adding 'abutils/utils/utilities.py'
2025-06-08T07:52:24,643   adding 'abutils/utils/matrices/blosum62'
2025-06-08T07:52:24,644   adding 'abutils/utils/matrices/match1mismatch0'
2025-06-08T07:52:24,646   adding 'abutils/utils/matrices/match3mismatch2'
2025-06-08T07:52:24,648   adding 'abutils-0.5.3.dist-info/licenses/LICENSE'
2025-06-08T07:52:24,650   adding 'abutils-0.5.3.dist-info/METADATA'
2025-06-08T07:52:24,651   adding 'abutils-0.5.3.dist-info/WHEEL'
2025-06-08T07:52:24,652   adding 'abutils-0.5.3.dist-info/top_level.txt'
2025-06-08T07:52:24,655   adding 'abutils-0.5.3.dist-info/RECORD'
2025-06-08T07:52:24,892   removing build/bdist.linux-armv7l/wheel
2025-06-08T07:52:25,139   Building wheel for abutils (setup.py): finished with status 'done'
2025-06-08T07:52:26,991   Created wheel for abutils: filename=abutils-0.5.3-py3-none-any.whl size=86653778 sha256=7f4fb99c951828dba8b9e39fbf007939f3f76e461282709c4eb396219c20e27a
2025-06-08T07:52:26,992   Stored in directory: /tmp/pip-ephem-wheel-cache-l4n3zj30/wheels/be/6c/62/ba7d9b38db898cb905518aac497153a2c5e123f4062f5030eb
2025-06-08T07:52:27,034 Successfully built abutils
2025-06-08T07:52:29,027 Removed build tracker: '/tmp/pip-build-tracker-_mgy_tmo'