2025-06-08T10:00:38,869 Created temporary directory: /tmp/pip-build-tracker-4ip25esh
2025-06-08T10:00:38,870 Initialized build tracking at /tmp/pip-build-tracker-4ip25esh
2025-06-08T10:00:38,871 Created build tracker: /tmp/pip-build-tracker-4ip25esh
2025-06-08T10:00:38,871 Entered build tracker: /tmp/pip-build-tracker-4ip25esh
2025-06-08T10:00:38,872 Created temporary directory: /tmp/pip-wheel-o9veejjn
2025-06-08T10:00:38,876 Created temporary directory: /tmp/pip-ephem-wheel-cache-omqw0_eq
2025-06-08T10:00:38,922 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-06-08T10:00:38,925 2 location(s) to search for versions of strucgap:
2025-06-08T10:00:38,925 * https://pypi.org/simple/strucgap/
2025-06-08T10:00:38,925 * https://www.piwheels.org/simple/strucgap/
2025-06-08T10:00:38,926 Fetching project page and analyzing links: https://pypi.org/simple/strucgap/
2025-06-08T10:00:38,926 Getting page https://pypi.org/simple/strucgap/
2025-06-08T10:00:38,928 Found index url https://pypi.org/simple/
2025-06-08T10:00:39,207 Fetched page https://pypi.org/simple/strucgap/ as application/vnd.pypi.simple.v1+json
2025-06-08T10:00:39,210   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/d4/cf/908ee965464dceab500051b070d301fc648f14f165918a250643f754312c/strucgap-1.0.1-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-08T10:00:39,211   Found link https://files.pythonhosted.org/packages/e4/ed/c84c67d5cb18aa5d6c871bc5abb254e198230535214a7cf8f003ecf813ae/strucgap-1.0.1.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.1
2025-06-08T10:00:39,212   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/e6/0a/417b6b5e0043e5a5e92598e60b289e11bbf3a1921db8a06967ac26c821ab/strucgap-1.0.2-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-08T10:00:39,212   Found link https://files.pythonhosted.org/packages/80/b5/c0a8aca19ac9b3b37852926dab5aef22813bfb7db17e022907b7513751cd/strucgap-1.0.2.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.2
2025-06-08T10:00:39,213   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/6c/8a/8046fc9d7585c40b76f94bcc0f51462b26b460ef72eaba283adc359b1414/strucgap-1.0.3-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-08T10:00:39,214   Found link https://files.pythonhosted.org/packages/36/64/97df6dbf736d30b1ed5a0f11b09513d266c5451783575b47fadd5ba720f7/strucgap-1.0.3.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.3
2025-06-08T10:00:39,214   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/4c/cf/29374aca5d9a6e4dcb92da71d7c737883fea9dc0c784add2f46b047bcdb3/strucgap-1.0.4-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-08T10:00:39,215   Found link https://files.pythonhosted.org/packages/f7/a4/54678a7f65da22ad9bf8c1fbc22ff415a1c4c59b190aa2cc0ab02bc71a27/strucgap-1.0.4.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.4
2025-06-08T10:00:39,216   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/3e/0a/acfe362babd9946aee23c5c9b973b22704fdd4625b21d3aefc3158469a8f/strucgap-1.0.5-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-08T10:00:39,216   Found link https://files.pythonhosted.org/packages/31/14/c9640736615f7b3cd7300f1146d0f6c3c707a24e604b663635e89fb72f74/strucgap-1.0.5.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.5
2025-06-08T10:00:39,217   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/19/2b/a229156141e4f96b442c92afa912d9dc7ff7ca93d4fd40498b412eb2e492/strucgap-1.0.6-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-08T10:00:39,218   Found link https://files.pythonhosted.org/packages/47/e1/49002ee8fee4ea83a29298aeadb5da1cad51e30702a716412b435796e909/strucgap-1.0.6.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.6
2025-06-08T10:00:39,218   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/f5/96/a6e1a5e8ddaa8319d34850b3a6ee7abc4cb4a45cab48147b26c76a355af2/strucgap-1.0.7-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-08T10:00:39,219   Found link https://files.pythonhosted.org/packages/61/54/ca1a7a265a6b1ab75b75bd1d707aa4d66a91f69dd4491dbcd23a5b1d96bc/strucgap-1.0.7.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.7
2025-06-08T10:00:39,220   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/a5/9d/28f80481e570ce67b245dc87afdefa13a5a3200a6f53baccfdd8d7683250/strucgap-1.0.8-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-08T10:00:39,220   Found link https://files.pythonhosted.org/packages/f3/20/5427f3d9632c77f35f2d3d0565ebdf4c63366100b5c96fa50ebdfcc6a8a2/strucgap-1.0.8.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.8
2025-06-08T10:00:39,221 Fetching project page and analyzing links: https://www.piwheels.org/simple/strucgap/
2025-06-08T10:00:39,221 Getting page https://www.piwheels.org/simple/strucgap/
2025-06-08T10:00:39,222 Found index url https://www.piwheels.org/simple/
2025-06-08T10:00:39,378 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/strucgap/
2025-06-08T10:00:40,030 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/strucgap/
2025-06-08T10:00:41,179 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/strucgap/
2025-06-08T10:00:43,384 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/strucgap/
2025-06-08T10:00:47,584 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/strucgap/
2025-06-08T10:00:47,805 Could not fetch URL https://www.piwheels.org/simple/strucgap/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/strucgap/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping
2025-06-08T10:00:47,807 Skipping link: not a file: https://www.piwheels.org/simple/strucgap/
2025-06-08T10:00:47,808 Skipping link: not a file: https://pypi.org/simple/strucgap/
2025-06-08T10:00:47,826 Given no hashes to check 1 links for project 'strucgap': discarding no candidates
2025-06-08T10:00:47,827 Collecting strucgap==1.0.4
2025-06-08T10:00:47,829   Created temporary directory: /tmp/pip-unpack-b9al3rbf
2025-06-08T10:00:48,060   Downloading strucgap-1.0.4.tar.gz (114 kB)
2025-06-08T10:00:48,183   Added strucgap==1.0.4 from https://files.pythonhosted.org/packages/f7/a4/54678a7f65da22ad9bf8c1fbc22ff415a1c4c59b190aa2cc0ab02bc71a27/strucgap-1.0.4.tar.gz to build tracker '/tmp/pip-build-tracker-4ip25esh'
2025-06-08T10:00:48,185   Running setup.py (path:/tmp/pip-wheel-o9veejjn/strucgap_37cb7440ea924a0bba69f301451fcd15/setup.py) egg_info for package strucgap
2025-06-08T10:00:48,186   Created temporary directory: /tmp/pip-pip-egg-info-zb7w4vx7
2025-06-08T10:00:48,187   Preparing metadata (setup.py): started
2025-06-08T10:00:48,188   Running command python setup.py egg_info
2025-06-08T10:00:49,018   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-06-08T10:00:49,019   !!

2025-06-08T10:00:49,019           ********************************************************************************
2025-06-08T10:00:49,020           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-06-08T10:00:49,021           License :: OSI Approved :: MIT License

2025-06-08T10:00:49,022           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-06-08T10:00:49,022           ********************************************************************************

2025-06-08T10:00:49,023   !!
2025-06-08T10:00:49,024     self._finalize_license_expression()
2025-06-08T10:00:49,046   running egg_info
2025-06-08T10:00:49,072   creating /tmp/pip-pip-egg-info-zb7w4vx7/strucgap.egg-info
2025-06-08T10:00:49,073   writing /tmp/pip-pip-egg-info-zb7w4vx7/strucgap.egg-info/PKG-INFO
2025-06-08T10:00:49,076   writing dependency_links to /tmp/pip-pip-egg-info-zb7w4vx7/strucgap.egg-info/dependency_links.txt
2025-06-08T10:00:49,078   writing requirements to /tmp/pip-pip-egg-info-zb7w4vx7/strucgap.egg-info/requires.txt
2025-06-08T10:00:49,079   writing top-level names to /tmp/pip-pip-egg-info-zb7w4vx7/strucgap.egg-info/top_level.txt
2025-06-08T10:00:49,081   writing manifest file '/tmp/pip-pip-egg-info-zb7w4vx7/strucgap.egg-info/SOURCES.txt'
2025-06-08T10:00:49,164   reading manifest file '/tmp/pip-pip-egg-info-zb7w4vx7/strucgap.egg-info/SOURCES.txt'
2025-06-08T10:00:49,169   writing manifest file '/tmp/pip-pip-egg-info-zb7w4vx7/strucgap.egg-info/SOURCES.txt'
2025-06-08T10:00:49,274   Preparing metadata (setup.py): finished with status 'done'
2025-06-08T10:00:49,278   Source in /tmp/pip-wheel-o9veejjn/strucgap_37cb7440ea924a0bba69f301451fcd15 has version 1.0.4, which satisfies requirement strucgap==1.0.4 from https://files.pythonhosted.org/packages/f7/a4/54678a7f65da22ad9bf8c1fbc22ff415a1c4c59b190aa2cc0ab02bc71a27/strucgap-1.0.4.tar.gz
2025-06-08T10:00:49,279   Removed strucgap==1.0.4 from https://files.pythonhosted.org/packages/f7/a4/54678a7f65da22ad9bf8c1fbc22ff415a1c4c59b190aa2cc0ab02bc71a27/strucgap-1.0.4.tar.gz from build tracker '/tmp/pip-build-tracker-4ip25esh'
2025-06-08T10:00:49,288 Created temporary directory: /tmp/pip-unpack-0eo_dd_n
2025-06-08T10:00:49,289 Created temporary directory: /tmp/pip-unpack-3plcf_3q
2025-06-08T10:00:49,290 Building wheels for collected packages: strucgap
2025-06-08T10:00:49,294   Created temporary directory: /tmp/pip-wheel-ppq8aozb
2025-06-08T10:00:49,294   DEPRECATION: Building 'strucgap' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'strucgap'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-06-08T10:00:49,296   Building wheel for strucgap (setup.py): started
2025-06-08T10:00:49,297   Destination directory: /tmp/pip-wheel-ppq8aozb
2025-06-08T10:00:49,297   Running command python setup.py bdist_wheel
2025-06-08T10:00:50,107   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-06-08T10:00:50,107   !!

2025-06-08T10:00:50,109           ********************************************************************************
2025-06-08T10:00:50,109           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-06-08T10:00:50,111           License :: OSI Approved :: MIT License

2025-06-08T10:00:50,112           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-06-08T10:00:50,112           ********************************************************************************

2025-06-08T10:00:50,113   !!
2025-06-08T10:00:50,113     self._finalize_license_expression()
2025-06-08T10:00:50,114   running bdist_wheel
2025-06-08T10:00:50,240   running build
2025-06-08T10:00:50,240   running build_py
2025-06-08T10:00:50,270   creating build/lib/strucgap
2025-06-08T10:00:50,272   copying strucgap/glycopeptidequant.py -> build/lib/strucgap
2025-06-08T10:00:50,276   copying strucgap/glyconetwork.py -> build/lib/strucgap
2025-06-08T10:00:50,279   copying strucgap/__init__.py -> build/lib/strucgap
2025-06-08T10:00:50,281   copying strucgap/insighttracker.py -> build/lib/strucgap
2025-06-08T10:00:50,284   copying strucgap/datavisualization.py -> build/lib/strucgap
2025-06-08T10:00:50,294   copying strucgap/glycosite.py -> build/lib/strucgap
2025-06-08T10:00:50,297   copying strucgap/preprocess.py -> build/lib/strucgap
2025-06-08T10:00:50,302   copying strucgap/functionannotation.py -> build/lib/strucgap
2025-06-08T10:00:50,307   copying strucgap/glycanstructure.py -> build/lib/strucgap
2025-06-08T10:00:50,338   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-06-08T10:00:50,339   !!

2025-06-08T10:00:50,340           ********************************************************************************
2025-06-08T10:00:50,340           Please avoid running ``setup.py`` directly.
2025-06-08T10:00:50,341           Instead, use pypa/build, pypa/installer or other
2025-06-08T10:00:50,341           standards-based tools.

2025-06-08T10:00:50,343           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-06-08T10:00:50,343           or your builds will no longer be supported.

2025-06-08T10:00:50,344           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-06-08T10:00:50,345           ********************************************************************************

2025-06-08T10:00:50,346   !!
2025-06-08T10:00:50,346     self.initialize_options()
2025-06-08T10:00:50,366   installing to build/bdist.linux-armv7l/wheel
2025-06-08T10:00:50,366   running install
2025-06-08T10:00:50,390   running install_lib
2025-06-08T10:00:50,416   creating build/bdist.linux-armv7l/wheel
2025-06-08T10:00:50,419   creating build/bdist.linux-armv7l/wheel/strucgap
2025-06-08T10:00:50,420   copying build/lib/strucgap/glycopeptidequant.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-08T10:00:50,424   copying build/lib/strucgap/glyconetwork.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-08T10:00:50,428   copying build/lib/strucgap/__init__.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-08T10:00:50,430   copying build/lib/strucgap/insighttracker.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-08T10:00:50,433   copying build/lib/strucgap/datavisualization.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-08T10:00:50,441   copying build/lib/strucgap/glycosite.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-08T10:00:50,444   copying build/lib/strucgap/preprocess.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-08T10:00:50,448   copying build/lib/strucgap/functionannotation.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-08T10:00:50,452   copying build/lib/strucgap/glycanstructure.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-08T10:00:50,456   running install_egg_info
2025-06-08T10:00:50,489   running egg_info
2025-06-08T10:00:50,518   writing strucgap.egg-info/PKG-INFO
2025-06-08T10:00:50,522   writing dependency_links to strucgap.egg-info/dependency_links.txt
2025-06-08T10:00:50,524   writing requirements to strucgap.egg-info/requires.txt
2025-06-08T10:00:50,526   writing top-level names to strucgap.egg-info/top_level.txt
2025-06-08T10:00:50,556   reading manifest file 'strucgap.egg-info/SOURCES.txt'
2025-06-08T10:00:50,562   writing manifest file 'strucgap.egg-info/SOURCES.txt'
2025-06-08T10:00:50,564   Copying strucgap.egg-info to build/bdist.linux-armv7l/wheel/./strucgap-1.0.4-py3.11.egg-info
2025-06-08T10:00:50,574   running install_scripts
2025-06-08T10:00:50,584   creating build/bdist.linux-armv7l/wheel/strucgap-1.0.4.dist-info/WHEEL
2025-06-08T10:00:50,587   creating '/tmp/pip-wheel-ppq8aozb/strucgap-1.0.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-06-08T10:00:50,590   adding 'strucgap/__init__.py'
2025-06-08T10:00:50,616   adding 'strucgap/datavisualization.py'
2025-06-08T10:00:50,626   adding 'strucgap/functionannotation.py'
2025-06-08T10:00:50,633   adding 'strucgap/glycanstructure.py'
2025-06-08T10:00:50,640   adding 'strucgap/glyconetwork.py'
2025-06-08T10:00:50,649   adding 'strucgap/glycopeptidequant.py'
2025-06-08T10:00:50,652   adding 'strucgap/glycosite.py'
2025-06-08T10:00:50,655   adding 'strucgap/insighttracker.py'
2025-06-08T10:00:50,660   adding 'strucgap/preprocess.py'
2025-06-08T10:00:50,663   adding 'strucgap-1.0.4.dist-info/METADATA'
2025-06-08T10:00:50,664   adding 'strucgap-1.0.4.dist-info/WHEEL'
2025-06-08T10:00:50,665   adding 'strucgap-1.0.4.dist-info/top_level.txt'
2025-06-08T10:00:50,666   adding 'strucgap-1.0.4.dist-info/RECORD'
2025-06-08T10:00:50,669   removing build/bdist.linux-armv7l/wheel
2025-06-08T10:00:50,779   Building wheel for strucgap (setup.py): finished with status 'done'
2025-06-08T10:00:50,783   Created wheel for strucgap: filename=strucgap-1.0.4-py3-none-any.whl size=121128 sha256=25dc6a52b5c15986b9953ea9721598db3d5ad9047db2c366b2f3cd8706a91db3
2025-06-08T10:00:50,784   Stored in directory: /tmp/pip-ephem-wheel-cache-omqw0_eq/wheels/c3/67/d2/82a2ec431e15fc364fe9537e88ec0e3a7a7f055e7abe17b573
2025-06-08T10:00:50,794 Successfully built strucgap
2025-06-08T10:00:50,802 Removed build tracker: '/tmp/pip-build-tracker-4ip25esh'