2025-06-08T04:52:43,056 Created temporary directory: /tmp/pip-build-tracker-jge2l8yw 2025-06-08T04:52:43,058 Initialized build tracking at /tmp/pip-build-tracker-jge2l8yw 2025-06-08T04:52:43,058 Created build tracker: /tmp/pip-build-tracker-jge2l8yw 2025-06-08T04:52:43,059 Entered build tracker: /tmp/pip-build-tracker-jge2l8yw 2025-06-08T04:52:43,060 Created temporary directory: /tmp/pip-wheel-_m8tusbv 2025-06-08T04:52:43,065 Created temporary directory: /tmp/pip-ephem-wheel-cache-mi1ei5ez 2025-06-08T04:52:43,121 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-06-08T04:52:43,123 2 location(s) to search for versions of rcsb-workflow: 2025-06-08T04:52:43,123 * https://pypi.org/simple/rcsb-workflow/ 2025-06-08T04:52:43,123 * https://www.piwheels.org/simple/rcsb-workflow/ 2025-06-08T04:52:43,124 Fetching project page and analyzing links: https://pypi.org/simple/rcsb-workflow/ 2025-06-08T04:52:43,125 Getting page https://pypi.org/simple/rcsb-workflow/ 2025-06-08T04:52:43,126 Found index url https://pypi.org/simple/ 2025-06-08T04:52:43,276 Fetched page https://pypi.org/simple/rcsb-workflow/ as application/vnd.pypi.simple.v1+json 2025-06-08T04:52:43,284 Skipping link: No binaries permitted for rcsb-workflow: https://files.pythonhosted.org/packages/78/d0/23a8be8725a48eddd981f46bd8687593b205a5ed6abf17fb9334a294586e/rcsb.workflow-0.10-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-workflow/) 2025-06-08T04:52:43,285 Found link https://files.pythonhosted.org/packages/cb/7d/aa1db48a899f79509fad6f390290d0f694147b18b17fa6e72c19941339b1/rcsb.workflow-0.10.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.10 2025-06-08T04:52:43,285 Skipping link: No binaries permitted for rcsb-workflow: https://files.pythonhosted.org/packages/75/b4/d5f90585e059bcaa41921139c1cddc229672c48dfadcf54fc051592d7cb4/rcsb.workflow-0.12-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-workflow/) 2025-06-08T04:52:43,286 Found link https://files.pythonhosted.org/packages/5e/a1/8b0645289b2fd41a36c059dc0394a913e713acbf9ca72645f72d85e44f51/rcsb.workflow-0.12.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.12 2025-06-08T04:52:43,286 Skipping link: No binaries permitted for rcsb-workflow: https://files.pythonhosted.org/packages/fd/31/e5a6269e92556d5a488d1a849661b150065107a2634466c3c4ecc5ea6911/rcsb.workflow-0.13-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-workflow/) 2025-06-08T04:52:43,287 Found link https://files.pythonhosted.org/packages/ef/34/1490a3d7c1675c3be838c9795bbb4441bad3d7c2cc2d404c0597c24d99a7/rcsb.workflow-0.13.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.13 2025-06-08T04:52:43,288 Skipping link: No binaries permitted for rcsb-workflow: https://files.pythonhosted.org/packages/5a/7c/08087b77aa0ba0210b46ba55eeaa64f8b312763d2d110cafe929b987822a/rcsb.workflow-0.14-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-workflow/) 2025-06-08T04:52:43,288 Found link https://files.pythonhosted.org/packages/7e/5d/886edcf1fa3d92668615e4c84eeefa13c0562b8c57eee8b9445c2389dc57/rcsb.workflow-0.14.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.14 2025-06-08T04:52:43,289 Skipping link: No binaries permitted for rcsb-workflow: https://files.pythonhosted.org/packages/7b/49/bafc398f998f86f9a0133cc39c3df3c063ae32ee3d7fdf966ce773265a75/rcsb.workflow-0.15-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-workflow/) 2025-06-08T04:52:43,290 Found link https://files.pythonhosted.org/packages/63/aa/7faa15131f6fe3338b48cd47d3eeda07a0940c1ecbf4a054055334036794/rcsb.workflow-0.15.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.15 2025-06-08T04:52:43,290 Skipping link: No binaries permitted for rcsb-workflow: https://files.pythonhosted.org/packages/9c/89/2fe54d22c10106e969e38d8e110ac3de2a4819d0c6dd5d6ca86c6b9d6e6b/rcsb.workflow-0.16-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-workflow/) 2025-06-08T04:52:43,291 Found link https://files.pythonhosted.org/packages/db/a0/0001e1c66b7baac6d5ce53e0e4947ee90a062e9c14e4a174a588fb28c752/rcsb.workflow-0.16.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.16 2025-06-08T04:52:43,292 Skipping link: No binaries permitted for rcsb-workflow: https://files.pythonhosted.org/packages/13/41/360fbe2e9d98738569bb1669788e88fe2496ac2aa96c348b507d78ba5302/rcsb.workflow-0.17-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-workflow/) 2025-06-08T04:52:43,292 Found link https://files.pythonhosted.org/packages/f7/84/117d8d973206bad4f7f09427a0948cda7a52c81b46fc8c5c136d318ababe/rcsb.workflow-0.17.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.17 2025-06-08T04:52:43,293 Skipping link: No binaries permitted for rcsb-workflow: https://files.pythonhosted.org/packages/9f/2d/22fab9fdfc355a038ea5469206dba54d72350058ee260f628810d9d562de/rcsb.workflow-0.18-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-workflow/) 2025-06-08T04:52:43,294 Found link https://files.pythonhosted.org/packages/9f/de/e28f9b191c36c65c1c047f13222db60c9a22e4a564827a6b62bc46310aa4/rcsb.workflow-0.18.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.18 2025-06-08T04:52:43,294 Skipping link: No binaries permitted for rcsb-workflow: https://files.pythonhosted.org/packages/e9/f5/63a371d2bad0c8e7dcc5e9c6a9ef328495cb55611c224aab98997d3cccea/rcsb.workflow-0.19-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-workflow/) 2025-06-08T04:52:43,295 Found link https://files.pythonhosted.org/packages/96/e7/15b34e1266afd513f55ab9e38206b67a4f3b505385827211ce8244dceec3/rcsb.workflow-0.19.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.19 2025-06-08T04:52:43,295 Found link https://files.pythonhosted.org/packages/72/d7/0cc0e87ef7bb02f1d913c3322c1b0ad919d4c96432da9328c79922d63e41/rcsb.workflow-0.24.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.24 2025-06-08T04:52:43,296 Found link https://files.pythonhosted.org/packages/e9/04/2a67edfea6414ac39d2921cb2cb7c8ebcb7b800fdf66c7e785b8f812b830/rcsb.workflow-0.25.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.25 2025-06-08T04:52:43,297 Found link https://files.pythonhosted.org/packages/8f/f0/5b6f0fc64d5bc178f6597fa6d91bc5ad28b3dae3d7a750c7df050491bbe6/rcsb.workflow-0.26.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.26 2025-06-08T04:52:43,297 Skipping link: No binaries permitted for rcsb-workflow: https://files.pythonhosted.org/packages/e3/35/7106e9d7b08a6e341b13c2a02fac24a9f27d00fe5e6dcd4f2f8bdac75874/rcsb.workflow-0.27-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-workflow/) 2025-06-08T04:52:43,298 Found link https://files.pythonhosted.org/packages/aa/6d/ec6c45876c6f64ab576050f94cdbcecc7b50c5aa1579866ef3128386af1a/rcsb.workflow-0.27.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.27 2025-06-08T04:52:43,299 Found link https://files.pythonhosted.org/packages/aa/f8/1d07a82cc9c9da539f84a2d929183bf5766ce1327b9900b3ed91f56086e1/rcsb.workflow-0.28.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.28 2025-06-08T04:52:43,299 Found link https://files.pythonhosted.org/packages/36/d1/10c24a304b299747a2c758deb94af3e3d48a5a6f1a063bfac855fecad364/rcsb.workflow-0.29.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.29 2025-06-08T04:52:43,300 Skipping link: No binaries permitted for rcsb-workflow: https://files.pythonhosted.org/packages/8d/41/7c57f896c290efd93fc06f7d319d9ce07978470ab67f27d495502b38ec3c/rcsb.workflow-0.30-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-workflow/) 2025-06-08T04:52:43,301 Found link https://files.pythonhosted.org/packages/2b/be/9bf4d5113ef7cf0bc5676030bfa1cc866d18de3d0c19b35ea3a5b6827cfc/rcsb.workflow-0.30.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.30 2025-06-08T04:52:43,301 Skipping link: No binaries permitted for rcsb-workflow: https://files.pythonhosted.org/packages/49/09/13a43a51091be0e1a1a3e5511641aa8ac8859b7ea015b83bf658ea3ded1f/rcsb.workflow-0.31-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-workflow/) 2025-06-08T04:52:43,302 Found link https://files.pythonhosted.org/packages/bb/b3/6d3bbea706b3092da6fd71f287626913459e391d5351942c94b5f8f50da7/rcsb.workflow-0.31.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.31 2025-06-08T04:52:43,303 Found link https://files.pythonhosted.org/packages/fa/f0/2c9a3b00f52449824589626f4af66a8ff6392dbad2224aaaf5d4609030dd/rcsb.workflow-0.32.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.32 2025-06-08T04:52:43,303 Found link https://files.pythonhosted.org/packages/22/36/148bce85b9617781eca089db3245f6c27626265000990ff2ec4bfd46b125/rcsb.workflow-0.33.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.33 2025-06-08T04:52:43,304 Found link https://files.pythonhosted.org/packages/3e/25/cd2964043223eb759af7822046efb07a6bfd7076629d070034f92c2530f9/rcsb.workflow-0.34.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.34 2025-06-08T04:52:43,305 Found link https://files.pythonhosted.org/packages/31/b6/d56e884444570ba6b27f9bc990ea107760f7dbb50466ffefb77f21dd33ca/rcsb.workflow-0.35.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.35 2025-06-08T04:52:43,305 Found link https://files.pythonhosted.org/packages/52/92/1b314438799ed8bd6300d0be7dd03d2e16ed792abce55bc05a23f36608b1/rcsb.workflow-0.36.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.36 2025-06-08T04:52:43,306 Found link https://files.pythonhosted.org/packages/02/74/ca633488c03152fff2454f2304e9687626680f2856e1bc4802b19f536668/rcsb.workflow-0.37.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.37 2025-06-08T04:52:43,306 Found link https://files.pythonhosted.org/packages/fa/97/2b988fac338477a8a2b7b18703a7bcde60776b9764990276a41c17d40945/rcsb.workflow-0.38.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.38 2025-06-08T04:52:43,307 Found link https://files.pythonhosted.org/packages/19/79/c471f5d3efd5df300de1a34a66e12315b5d46dc72e30f2da9f6033209824/rcsb.workflow-0.39.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.39 2025-06-08T04:52:43,308 Found link https://files.pythonhosted.org/packages/b8/fb/710f1f8d97bb4444d315608b0dc5cffe16ec5b8144e7640389c9fe88f470/rcsb.workflow-0.40.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.40 2025-06-08T04:52:43,308 Found link https://files.pythonhosted.org/packages/26/39/030a8fe7429ad7beb26495df5efb8e46a003c6adc7c839c4646b142c4901/rcsb.workflow-0.41.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.41 2025-06-08T04:52:43,309 Found link https://files.pythonhosted.org/packages/b9/c3/3a12ae847a2c9b25e63731a021abc469c899fdefbc79d0efcd4b31b993d5/rcsb.workflow-0.42.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.42 2025-06-08T04:52:43,310 Found link https://files.pythonhosted.org/packages/38/43/fd5706cf2ed00c42c1f1d3078ac3c1b931b82ffbca7d41cdca296fd45df4/rcsb_workflow-0.43.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.43 2025-06-08T04:52:43,310 Found link https://files.pythonhosted.org/packages/7e/92/704d1de8467ed03ca9ad48752e590b583988d9498ca281b0e5efcb47fb6c/rcsb_workflow-0.44.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.44 2025-06-08T04:52:43,311 Found link https://files.pythonhosted.org/packages/6e/1c/3cccb3cd1e24e1a806347e1512a5170fc156414a3a70757372a3779d8f53/rcsb_workflow-0.45.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.45 2025-06-08T04:52:43,312 Found link https://files.pythonhosted.org/packages/f7/82/07272db3b851695019c8e4ee561326410caf6a625cd743d4017cddb4bbfe/rcsb_workflow-0.46.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.46 2025-06-08T04:52:43,312 Found link https://files.pythonhosted.org/packages/67/ba/977800fb227edf8fdcccb81d6fc2f34233cf26055202c1e91ba18742af19/rcsb_workflow-0.47.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.47 2025-06-08T04:52:43,313 Found link https://files.pythonhosted.org/packages/82/a8/8ee22802b00ee2c7cba6f4e725ad465001f6cc558a35e6d410ce81aef581/rcsb_workflow-0.48.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.48 2025-06-08T04:52:43,314 Found link https://files.pythonhosted.org/packages/6d/1f/633b0272c0b6417aa5f8be73903b866b1deb616b6f4d7564a3c614c0a84b/rcsb_workflow-0.49.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.49 2025-06-08T04:52:43,315 Found link https://files.pythonhosted.org/packages/80/bd/836b64ad2452a6c96b5ae31fac22079fa7081e27a7ac370747aef9dc448e/rcsb_workflow-0.50.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.50 2025-06-08T04:52:43,315 Found link https://files.pythonhosted.org/packages/24/4b/54aebde52046d97a766bf8e53d41be6a54c939fbbecf19f5091cfb410106/rcsb_workflow-0.51.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.51 2025-06-08T04:52:43,316 Found link https://files.pythonhosted.org/packages/8d/3c/11c205c6f583b87f0f82d9f449ca88e0f15fc26fb4fa9b86363ee481eac7/rcsb_workflow-0.52.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.52 2025-06-08T04:52:43,317 Found link https://files.pythonhosted.org/packages/aa/3f/1a26bdff8ab2aef5839fcccab0f3ce5e27e46660764dd8a1276cbbf3e111/rcsb_workflow-0.53.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.53 2025-06-08T04:52:43,318 Found link https://files.pythonhosted.org/packages/f5/9b/c27f5e9b2a3183d5b87731d8cb368669721ad60def6b261f2410e67ae75a/rcsb_workflow-0.54.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.54 2025-06-08T04:52:43,319 Found link https://files.pythonhosted.org/packages/3d/5a/bb1d98659d40d9ed9bd8b9947e8d94489333bcf501bff134e03cc83a4782/rcsb_workflow-0.55.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.55 2025-06-08T04:52:43,319 Found link https://files.pythonhosted.org/packages/60/6a/8d79c33c81564acc4fb99e2d614a7103978fd8023b74957208a4895b0feb/rcsb_workflow-0.56.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.56 2025-06-08T04:52:43,320 Found link https://files.pythonhosted.org/packages/92/15/a4340fd88050a6f11eed6f359bd468e0fa87fe628696986bd9a3e389c982/rcsb_workflow-0.57.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.57 2025-06-08T04:52:43,320 Found link https://files.pythonhosted.org/packages/28/be/8eca04af4129cb68fefc96cc9c79253285fb8aaae20f4f45c18fc23922fb/rcsb_workflow-0.58.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.58 2025-06-08T04:52:43,321 Found link https://files.pythonhosted.org/packages/37/c5/d27df93f8c3f6b83960402a2b5f37a088fef0179082a121194a7a82de58c/rcsb_workflow-0.59.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.59 2025-06-08T04:52:43,322 Fetching project page and analyzing links: https://www.piwheels.org/simple/rcsb-workflow/ 2025-06-08T04:52:43,323 Getting page https://www.piwheels.org/simple/rcsb-workflow/ 2025-06-08T04:52:43,324 Found index url https://www.piwheels.org/simple/ 2025-06-08T04:52:43,490 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/rcsb-workflow/ 2025-06-08T04:52:44,149 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/rcsb-workflow/ 2025-06-08T04:52:45,329 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/rcsb-workflow/ 2025-06-08T04:52:47,516 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/rcsb-workflow/ 2025-06-08T04:52:51,710 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/rcsb-workflow/ 2025-06-08T04:52:51,877 Could not fetch URL https://www.piwheels.org/simple/rcsb-workflow/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/rcsb-workflow/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping 2025-06-08T04:52:51,879 Skipping link: not a file: https://www.piwheels.org/simple/rcsb-workflow/ 2025-06-08T04:52:51,880 Skipping link: not a file: https://pypi.org/simple/rcsb-workflow/ 2025-06-08T04:52:51,903 Given no hashes to check 1 links for project 'rcsb-workflow': discarding no candidates 2025-06-08T04:52:51,905 Collecting rcsb-workflow==0.55 2025-06-08T04:52:51,908 Created temporary directory: /tmp/pip-unpack-p35_hbb6 2025-06-08T04:52:52,281 Downloading rcsb_workflow-0.55.tar.gz (33 kB) 2025-06-08T04:52:52,391 Added rcsb-workflow==0.55 from https://files.pythonhosted.org/packages/3d/5a/bb1d98659d40d9ed9bd8b9947e8d94489333bcf501bff134e03cc83a4782/rcsb_workflow-0.55.tar.gz to build tracker '/tmp/pip-build-tracker-jge2l8yw' 2025-06-08T04:52:52,393 Running setup.py (path:/tmp/pip-wheel-_m8tusbv/rcsb-workflow_20e77686e8ec4c77b810062c0cb396e0/setup.py) egg_info for package rcsb-workflow 2025-06-08T04:52:52,394 Created temporary directory: /tmp/pip-pip-egg-info-iq5mmyh_ 2025-06-08T04:52:52,395 Preparing metadata (setup.py): started 2025-06-08T04:52:52,396 Running command python setup.py egg_info 2025-06-08T04:52:52,985 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-06-08T04:52:52,986 warnings.warn(msg) 2025-06-08T04:52:52,986 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-06-08T04:52:52,987 warnings.warn(msg) 2025-06-08T04:52:53,291 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-06-08T04:52:53,292 !! 2025-06-08T04:52:53,293 ******************************************************************************** 2025-06-08T04:52:53,293 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-06-08T04:52:53,295 License :: OSI Approved :: Apache Software License 2025-06-08T04:52:53,296 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-08T04:52:53,296 ******************************************************************************** 2025-06-08T04:52:53,298 !! 2025-06-08T04:52:53,298 self._finalize_license_expression() 2025-06-08T04:52:53,324 running egg_info 2025-06-08T04:52:53,354 creating /tmp/pip-pip-egg-info-iq5mmyh_/rcsb.workflow.egg-info 2025-06-08T04:52:53,355 writing /tmp/pip-pip-egg-info-iq5mmyh_/rcsb.workflow.egg-info/PKG-INFO 2025-06-08T04:52:53,361 writing dependency_links to /tmp/pip-pip-egg-info-iq5mmyh_/rcsb.workflow.egg-info/dependency_links.txt 2025-06-08T04:52:53,362 writing entry points to /tmp/pip-pip-egg-info-iq5mmyh_/rcsb.workflow.egg-info/entry_points.txt 2025-06-08T04:52:53,365 writing requirements to /tmp/pip-pip-egg-info-iq5mmyh_/rcsb.workflow.egg-info/requires.txt 2025-06-08T04:52:53,366 writing top-level names to /tmp/pip-pip-egg-info-iq5mmyh_/rcsb.workflow.egg-info/top_level.txt 2025-06-08T04:52:53,368 writing manifest file '/tmp/pip-pip-egg-info-iq5mmyh_/rcsb.workflow.egg-info/SOURCES.txt' 2025-06-08T04:52:53,482 reading manifest file '/tmp/pip-pip-egg-info-iq5mmyh_/rcsb.workflow.egg-info/SOURCES.txt' 2025-06-08T04:52:53,484 reading manifest template 'MANIFEST.in' 2025-06-08T04:52:53,485 adding license file 'LICENSE' 2025-06-08T04:52:53,489 writing manifest file '/tmp/pip-pip-egg-info-iq5mmyh_/rcsb.workflow.egg-info/SOURCES.txt' 2025-06-08T04:52:53,596 Preparing metadata (setup.py): finished with status 'done' 2025-06-08T04:52:53,600 Source in /tmp/pip-wheel-_m8tusbv/rcsb-workflow_20e77686e8ec4c77b810062c0cb396e0 has version 0.55, which satisfies requirement rcsb-workflow==0.55 from https://files.pythonhosted.org/packages/3d/5a/bb1d98659d40d9ed9bd8b9947e8d94489333bcf501bff134e03cc83a4782/rcsb_workflow-0.55.tar.gz 2025-06-08T04:52:53,601 Removed rcsb-workflow==0.55 from https://files.pythonhosted.org/packages/3d/5a/bb1d98659d40d9ed9bd8b9947e8d94489333bcf501bff134e03cc83a4782/rcsb_workflow-0.55.tar.gz from build tracker '/tmp/pip-build-tracker-jge2l8yw' 2025-06-08T04:52:53,610 Created temporary directory: /tmp/pip-unpack-epp5lugc 2025-06-08T04:52:53,611 Created temporary directory: /tmp/pip-unpack-bf7gtjfw 2025-06-08T04:52:53,612 Building wheels for collected packages: rcsb-workflow 2025-06-08T04:52:53,618 Created temporary directory: /tmp/pip-wheel-nmnqws3f 2025-06-08T04:52:53,619 DEPRECATION: Building 'rcsb-workflow' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'rcsb-workflow'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-06-08T04:52:53,620 Building wheel for rcsb-workflow (setup.py): started 2025-06-08T04:52:53,622 Destination directory: /tmp/pip-wheel-nmnqws3f 2025-06-08T04:52:53,622 Running command python setup.py bdist_wheel 2025-06-08T04:52:54,179 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-06-08T04:52:54,179 warnings.warn(msg) 2025-06-08T04:52:54,180 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-06-08T04:52:54,181 warnings.warn(msg) 2025-06-08T04:52:54,477 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-06-08T04:52:54,478 !! 2025-06-08T04:52:54,479 ******************************************************************************** 2025-06-08T04:52:54,480 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-06-08T04:52:54,481 License :: OSI Approved :: Apache Software License 2025-06-08T04:52:54,482 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-08T04:52:54,483 ******************************************************************************** 2025-06-08T04:52:54,484 !! 2025-06-08T04:52:54,484 self._finalize_license_expression() 2025-06-08T04:52:54,485 running bdist_wheel 2025-06-08T04:52:54,562 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:135: SetuptoolsDeprecationWarning: bdist_wheel.universal is deprecated 2025-06-08T04:52:54,563 !! 2025-06-08T04:52:54,564 ******************************************************************************** 2025-06-08T04:52:54,565 With Python 2.7 end-of-life, support for building universal wheels 2025-06-08T04:52:54,565 (i.e., wheels that support both Python 2 and Python 3) 2025-06-08T04:52:54,566 is being obviated. 2025-06-08T04:52:54,566 Please discontinue using this option, or if you still need it, 2025-06-08T04:52:54,567 file an issue with pypa/setuptools describing your use case. 2025-06-08T04:52:54,568 By 2025-Aug-30, you need to update your project and remove deprecated calls 2025-06-08T04:52:54,569 or your builds will no longer be supported. 2025-06-08T04:52:54,569 ******************************************************************************** 2025-06-08T04:52:54,571 !! 2025-06-08T04:52:54,571 self.finalize_options() 2025-06-08T04:52:54,621 running build 2025-06-08T04:52:54,622 running build_py 2025-06-08T04:52:54,652 creating build/lib/rcsb 2025-06-08T04:52:54,654 copying rcsb/__init__.py -> build/lib/rcsb 2025-06-08T04:52:54,657 creating build/lib/rcsb/workflow 2025-06-08T04:52:54,658 copying rcsb/workflow/__init__.py -> build/lib/rcsb/workflow 2025-06-08T04:52:54,660 creating build/lib/rcsb/workflow/bcif 2025-06-08T04:52:54,661 copying rcsb/workflow/bcif/__init__.py -> build/lib/rcsb/workflow/bcif 2025-06-08T04:52:54,663 copying rcsb/workflow/bcif/task_functions.py -> build/lib/rcsb/workflow/bcif 2025-06-08T04:52:54,666 creating build/lib/rcsb/workflow/wuw 2025-06-08T04:52:54,667 copying rcsb/workflow/wuw/__init__.py -> build/lib/rcsb/workflow/wuw 2025-06-08T04:52:54,669 copying rcsb/workflow/wuw/ExDbWorkflow.py -> build/lib/rcsb/workflow/wuw 2025-06-08T04:52:54,672 copying rcsb/workflow/wuw/PdbCsmImageWorkflow.py -> build/lib/rcsb/workflow/wuw 2025-06-08T04:52:54,674 copying rcsb/workflow/wuw/BcifWorkflow.py -> build/lib/rcsb/workflow/wuw 2025-06-08T04:52:54,677 creating build/lib/rcsb/workflow/cli 2025-06-08T04:52:54,678 copying rcsb/workflow/cli/ExDbExec.py -> build/lib/rcsb/workflow/cli 2025-06-08T04:52:54,680 copying rcsb/workflow/cli/__init__.py -> build/lib/rcsb/workflow/cli 2025-06-08T04:52:54,682 copying rcsb/workflow/cli/ImgExec.py -> build/lib/rcsb/workflow/cli 2025-06-08T04:52:54,684 copying rcsb/workflow/cli/BcifExec.py -> build/lib/rcsb/workflow/cli 2025-06-08T04:52:54,688 creating build/lib/rcsb/workflow/targets 2025-06-08T04:52:54,689 copying rcsb/workflow/targets/ProteinTargetSequenceWorkflow.py -> build/lib/rcsb/workflow/targets 2025-06-08T04:52:54,692 copying rcsb/workflow/targets/ProteinTargetSequenceExecutionWorkflow.py -> build/lib/rcsb/workflow/targets 2025-06-08T04:52:54,695 copying rcsb/workflow/targets/__init__.py -> build/lib/rcsb/workflow/targets 2025-06-08T04:52:54,697 creating build/lib/rcsb/workflow/chem 2025-06-08T04:52:54,698 copying rcsb/workflow/chem/ChemCompImageWorkflow.py -> build/lib/rcsb/workflow/chem 2025-06-08T04:52:54,701 copying rcsb/workflow/chem/ChemCompFileWorkflow.py -> build/lib/rcsb/workflow/chem 2025-06-08T04:52:54,703 copying rcsb/workflow/chem/__init__.py -> build/lib/rcsb/workflow/chem 2025-06-08T04:52:54,705 copying rcsb/workflow/chem/ChemCompSearchIndexWorkflow.py -> build/lib/rcsb/workflow/chem 2025-06-08T04:52:54,751 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-06-08T04:52:54,752 !! 2025-06-08T04:52:54,753 ******************************************************************************** 2025-06-08T04:52:54,754 Please avoid running ``setup.py`` directly. 2025-06-08T04:52:54,754 Instead, use pypa/build, pypa/installer or other 2025-06-08T04:52:54,755 standards-based tools. 2025-06-08T04:52:54,756 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-06-08T04:52:54,757 or your builds will no longer be supported. 2025-06-08T04:52:54,758 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-06-08T04:52:54,758 ******************************************************************************** 2025-06-08T04:52:54,759 !! 2025-06-08T04:52:54,760 self.initialize_options() 2025-06-08T04:52:54,782 installing to build/bdist.linux-armv7l/wheel 2025-06-08T04:52:54,783 running install 2025-06-08T04:52:54,808 running install_lib 2025-06-08T04:52:54,836 creating build/bdist.linux-armv7l/wheel 2025-06-08T04:52:54,838 creating build/bdist.linux-armv7l/wheel/rcsb 2025-06-08T04:52:54,839 copying build/lib/rcsb/__init__.py -> build/bdist.linux-armv7l/wheel/./rcsb 2025-06-08T04:52:54,842 creating build/bdist.linux-armv7l/wheel/rcsb/workflow 2025-06-08T04:52:54,843 creating build/bdist.linux-armv7l/wheel/rcsb/workflow/bcif 2025-06-08T04:52:54,845 copying build/lib/rcsb/workflow/bcif/__init__.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/bcif 2025-06-08T04:52:54,846 copying build/lib/rcsb/workflow/bcif/task_functions.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/bcif 2025-06-08T04:52:54,849 creating build/bdist.linux-armv7l/wheel/rcsb/workflow/wuw 2025-06-08T04:52:54,850 copying build/lib/rcsb/workflow/wuw/__init__.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/wuw 2025-06-08T04:52:54,852 copying build/lib/rcsb/workflow/wuw/ExDbWorkflow.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/wuw 2025-06-08T04:52:54,855 copying build/lib/rcsb/workflow/wuw/PdbCsmImageWorkflow.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/wuw 2025-06-08T04:52:54,857 copying build/lib/rcsb/workflow/wuw/BcifWorkflow.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/wuw 2025-06-08T04:52:54,859 copying build/lib/rcsb/workflow/__init__.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow 2025-06-08T04:52:54,861 creating build/bdist.linux-armv7l/wheel/rcsb/workflow/cli 2025-06-08T04:52:54,863 copying build/lib/rcsb/workflow/cli/ExDbExec.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/cli 2025-06-08T04:52:54,865 copying build/lib/rcsb/workflow/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/cli 2025-06-08T04:52:54,867 copying build/lib/rcsb/workflow/cli/ImgExec.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/cli 2025-06-08T04:52:54,869 copying build/lib/rcsb/workflow/cli/BcifExec.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/cli 2025-06-08T04:52:54,872 creating build/bdist.linux-armv7l/wheel/rcsb/workflow/targets 2025-06-08T04:52:54,873 copying build/lib/rcsb/workflow/targets/ProteinTargetSequenceWorkflow.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/targets 2025-06-08T04:52:54,877 copying build/lib/rcsb/workflow/targets/ProteinTargetSequenceExecutionWorkflow.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/targets 2025-06-08T04:52:54,880 copying build/lib/rcsb/workflow/targets/__init__.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/targets 2025-06-08T04:52:54,882 creating build/bdist.linux-armv7l/wheel/rcsb/workflow/chem 2025-06-08T04:52:54,884 copying build/lib/rcsb/workflow/chem/ChemCompImageWorkflow.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/chem 2025-06-08T04:52:54,886 copying build/lib/rcsb/workflow/chem/ChemCompFileWorkflow.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/chem 2025-06-08T04:52:54,889 copying build/lib/rcsb/workflow/chem/__init__.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/chem 2025-06-08T04:52:54,890 copying build/lib/rcsb/workflow/chem/ChemCompSearchIndexWorkflow.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/chem 2025-06-08T04:52:54,892 running install_egg_info 2025-06-08T04:52:54,930 running egg_info 2025-06-08T04:52:54,960 writing rcsb.workflow.egg-info/PKG-INFO 2025-06-08T04:52:54,964 writing dependency_links to rcsb.workflow.egg-info/dependency_links.txt 2025-06-08T04:52:54,966 writing entry points to rcsb.workflow.egg-info/entry_points.txt 2025-06-08T04:52:54,968 writing requirements to rcsb.workflow.egg-info/requires.txt 2025-06-08T04:52:54,969 writing top-level names to rcsb.workflow.egg-info/top_level.txt 2025-06-08T04:52:55,015 reading manifest file 'rcsb.workflow.egg-info/SOURCES.txt' 2025-06-08T04:52:55,019 reading manifest template 'MANIFEST.in' 2025-06-08T04:52:55,020 adding license file 'LICENSE' 2025-06-08T04:52:55,023 writing manifest file 'rcsb.workflow.egg-info/SOURCES.txt' 2025-06-08T04:52:55,025 Copying rcsb.workflow.egg-info to build/bdist.linux-armv7l/wheel/./rcsb.workflow-0.55-py3.11.egg-info 2025-06-08T04:52:55,038 running install_scripts 2025-06-08T04:52:55,052 creating build/bdist.linux-armv7l/wheel/rcsb_workflow-0.55.dist-info/WHEEL 2025-06-08T04:52:55,055 creating '/tmp/pip-wheel-nmnqws3f/rcsb_workflow-0.55-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-06-08T04:52:55,057 adding 'rcsb/__init__.py' 2025-06-08T04:52:55,059 adding 'rcsb/workflow/__init__.py' 2025-06-08T04:52:55,061 adding 'rcsb/workflow/bcif/__init__.py' 2025-06-08T04:52:55,064 adding 'rcsb/workflow/bcif/task_functions.py' 2025-06-08T04:52:55,066 adding 'rcsb/workflow/chem/ChemCompFileWorkflow.py' 2025-06-08T04:52:55,068 adding 'rcsb/workflow/chem/ChemCompImageWorkflow.py' 2025-06-08T04:52:55,070 adding 'rcsb/workflow/chem/ChemCompSearchIndexWorkflow.py' 2025-06-08T04:52:55,072 adding 'rcsb/workflow/chem/__init__.py' 2025-06-08T04:52:55,074 adding 'rcsb/workflow/cli/BcifExec.py' 2025-06-08T04:52:55,076 adding 'rcsb/workflow/cli/ExDbExec.py' 2025-06-08T04:52:55,077 adding 'rcsb/workflow/cli/ImgExec.py' 2025-06-08T04:52:55,079 adding 'rcsb/workflow/cli/__init__.py' 2025-06-08T04:52:55,081 adding 'rcsb/workflow/targets/ProteinTargetSequenceExecutionWorkflow.py' 2025-06-08T04:52:55,085 adding 'rcsb/workflow/targets/ProteinTargetSequenceWorkflow.py' 2025-06-08T04:52:55,086 adding 'rcsb/workflow/targets/__init__.py' 2025-06-08T04:52:55,088 adding 'rcsb/workflow/wuw/BcifWorkflow.py' 2025-06-08T04:52:55,091 adding 'rcsb/workflow/wuw/ExDbWorkflow.py' 2025-06-08T04:52:55,092 adding 'rcsb/workflow/wuw/PdbCsmImageWorkflow.py' 2025-06-08T04:52:55,093 adding 'rcsb/workflow/wuw/__init__.py' 2025-06-08T04:52:55,097 adding 'rcsb_workflow-0.55.dist-info/licenses/LICENSE' 2025-06-08T04:52:55,098 adding 'rcsb_workflow-0.55.dist-info/METADATA' 2025-06-08T04:52:55,099 adding 'rcsb_workflow-0.55.dist-info/WHEEL' 2025-06-08T04:52:55,100 adding 'rcsb_workflow-0.55.dist-info/entry_points.txt' 2025-06-08T04:52:55,101 adding 'rcsb_workflow-0.55.dist-info/top_level.txt' 2025-06-08T04:52:55,102 adding 'rcsb_workflow-0.55.dist-info/RECORD' 2025-06-08T04:52:55,104 removing build/bdist.linux-armv7l/wheel 2025-06-08T04:52:55,224 Building wheel for rcsb-workflow (setup.py): finished with status 'done' 2025-06-08T04:52:55,227 Created wheel for rcsb-workflow: filename=rcsb_workflow-0.55-py2.py3-none-any.whl size=38326 sha256=eeea3750da4ef1f601b691f550c41dcf657977c1722c438e7b2746e372b8dc1a 2025-06-08T04:52:55,228 Stored in directory: /tmp/pip-ephem-wheel-cache-mi1ei5ez/wheels/06/e1/6f/f93cc41ed26fe0af5b5aa147d60fea4f9425f89c7342b1e9e3 2025-06-08T04:52:55,241 Successfully built rcsb-workflow 2025-06-08T04:52:55,246 Removed build tracker: '/tmp/pip-build-tracker-jge2l8yw'