2025-06-09T00:03:37,179 Created temporary directory: /tmp/pip-build-tracker-71hmrf8k
2025-06-09T00:03:37,180 Initialized build tracking at /tmp/pip-build-tracker-71hmrf8k
2025-06-09T00:03:37,181 Created build tracker: /tmp/pip-build-tracker-71hmrf8k
2025-06-09T00:03:37,181 Entered build tracker: /tmp/pip-build-tracker-71hmrf8k
2025-06-09T00:03:37,182 Created temporary directory: /tmp/pip-wheel-7jw_9odb
2025-06-09T00:03:37,186 Created temporary directory: /tmp/pip-ephem-wheel-cache-r4it10p4
2025-06-09T00:03:37,238 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-06-09T00:03:37,240 2 location(s) to search for versions of biobb-structure-checking:
2025-06-09T00:03:37,240 * https://pypi.org/simple/biobb-structure-checking/
2025-06-09T00:03:37,240 * https://www.piwheels.org/simple/biobb-structure-checking/
2025-06-09T00:03:37,241 Fetching project page and analyzing links: https://pypi.org/simple/biobb-structure-checking/
2025-06-09T00:03:37,242 Getting page https://pypi.org/simple/biobb-structure-checking/
2025-06-09T00:03:37,243 Found index url https://pypi.org/simple/
2025-06-09T00:03:37,468 Fetched page https://pypi.org/simple/biobb-structure-checking/ as application/vnd.pypi.simple.v1+json
2025-06-09T00:03:37,477   Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/97/7b/73931348800918852f48d1e0b88da75673429f805267bcfa6e136b0896f7/biobb_structure_checking-0.0.1-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.6.*)
2025-06-09T00:03:37,479   Link requires a different Python (3.11.2 not in: '==3.6.*'): https://files.pythonhosted.org/packages/87/64/3b82ebc4f6bb74fcce720b885c8ad2c194c6e25cb1c9ae1d9aac7100e5c4/biobb_structure_checking-0.0.1.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.6.*)
2025-06-09T00:03:37,479   Skipping link: 0.0.1 Requires-Python ==3.6.*: https://files.pythonhosted.org/packages/87/64/3b82ebc4f6bb74fcce720b885c8ad2c194c6e25cb1c9ae1d9aac7100e5c4/biobb_structure_checking-0.0.1.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.6.*)
2025-06-09T00:03:37,480   Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/39/6b/55e1c27621bfce13456eda9ee174a696da84ab5085b892fef791f217fbf3/biobb_structure_checking-1.0.5-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.6.*)
2025-06-09T00:03:37,481   Link requires a different Python (3.11.2 not in: '==3.6.*'): https://files.pythonhosted.org/packages/2f/18/132f1dfff6687115bc639ff77bdd1da0734bb2dccffa540eaaccb2c7f2ce/biobb_structure_checking-1.0.5.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.6.*)
2025-06-09T00:03:37,481   Skipping link: 1.0.5 Requires-Python ==3.6.*: https://files.pythonhosted.org/packages/2f/18/132f1dfff6687115bc639ff77bdd1da0734bb2dccffa540eaaccb2c7f2ce/biobb_structure_checking-1.0.5.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.6.*)
2025-06-09T00:03:37,482   Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/1b/a0/4705f90f309c23f5df51bdc877610f22bc8be4c656df9bbb1555f2c94ac2/biobb_structure_checking-1.0.6-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.6.*)
2025-06-09T00:03:37,483   Link requires a different Python (3.11.2 not in: '==3.6.*'): https://files.pythonhosted.org/packages/bc/12/399938f0fdbc9442ba8b6a8c51aeaf6f273da2a0ca7fa79c4af0f2ff98b0/biobb_structure_checking-1.0.6.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.6.*)
2025-06-09T00:03:37,484   Skipping link: 1.0.6 Requires-Python ==3.6.*: https://files.pythonhosted.org/packages/bc/12/399938f0fdbc9442ba8b6a8c51aeaf6f273da2a0ca7fa79c4af0f2ff98b0/biobb_structure_checking-1.0.6.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.6.*)
2025-06-09T00:03:37,484   Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/15/27/1f57bfd3399f4dad1ed0cdd688572ae523a0a418818dceeeb6cc03a042d2/biobb_structure_checking-1.0.7-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.6.*)
2025-06-09T00:03:37,485   Link requires a different Python (3.11.2 not in: '==3.6.*'): https://files.pythonhosted.org/packages/5d/45/753c15432088a137cfe7418e29f7d28d9e81843965916475c4daf0a7a843/biobb_structure_checking-1.0.7.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.6.*)
2025-06-09T00:03:37,486   Skipping link: 1.0.7 Requires-Python ==3.6.*: https://files.pythonhosted.org/packages/5d/45/753c15432088a137cfe7418e29f7d28d9e81843965916475c4daf0a7a843/biobb_structure_checking-1.0.7.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.6.*)
2025-06-09T00:03:37,486   Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/17/c3/9ec35a7ecd376c6af5dcd73601487b011794c8932a9ca2fbe86acf3124dc/biobb_structure_checking-3.0.0-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*)
2025-06-09T00:03:37,487   Link requires a different Python (3.11.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/fa/26/32d892050a7c7816a541d626bb5c0102af13ec6624a5a528baedaffeabfb/biobb_structure_checking-3.0.0.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*)
2025-06-09T00:03:37,488   Skipping link: 3.0.0 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/fa/26/32d892050a7c7816a541d626bb5c0102af13ec6624a5a528baedaffeabfb/biobb_structure_checking-3.0.0.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*)
2025-06-09T00:03:37,489   Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/63/11/c5d62e6959509d4f3d461a92c251c1b5fafd57e399b6c73fa88b0e26c0a2/biobb_structure_checking-3.0.1-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*)
2025-06-09T00:03:37,489   Link requires a different Python (3.11.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/42/1a/077671581def975fdb717292dbac47a72ad20e292f88eece4cafebce2e9a/biobb_structure_checking-3.0.1.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*)
2025-06-09T00:03:37,490   Skipping link: 3.0.1 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/42/1a/077671581def975fdb717292dbac47a72ad20e292f88eece4cafebce2e9a/biobb_structure_checking-3.0.1.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*)
2025-06-09T00:03:37,491   Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/93/15/a14cc7a8f7d40b1ba69721609481028dd6594726aebad8a6d6c94232929e/biobb_structure_checking-3.0.2-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*)
2025-06-09T00:03:37,491   Link requires a different Python (3.11.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/df/39/28b3506ff5c71675d5709f21f08032aa5cbd3348d1d77a9699c9e3d940c9/biobb_structure_checking-3.0.2.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*)
2025-06-09T00:03:37,492   Skipping link: 3.0.2 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/df/39/28b3506ff5c71675d5709f21f08032aa5cbd3348d1d77a9699c9e3d940c9/biobb_structure_checking-3.0.2.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*)
2025-06-09T00:03:37,493   Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/e7/18/408d43c8e46e84b65c744e7efe600090336ba5257d2ec4f6bc98b9dad680/biobb_structure_checking-3.5.0-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*)
2025-06-09T00:03:37,493   Link requires a different Python (3.11.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/22/00/8481dda804f911206b521a578bce5e91d0e50fc802bb9979b83527238d49/biobb_structure_checking-3.5.0.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*)
2025-06-09T00:03:37,494   Skipping link: 3.5.0 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/22/00/8481dda804f911206b521a578bce5e91d0e50fc802bb9979b83527238d49/biobb_structure_checking-3.5.0.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*)
2025-06-09T00:03:37,495   Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/98/70/39ff96ffb6b4fa3ba363c93af3119de2312c9ab94558ca54e1000fc8c07d/biobb_structure_checking-3.5.2-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*)
2025-06-09T00:03:37,495   Link requires a different Python (3.11.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/9d/52/34f905209407f9a6e43c472919fb1ed241d2c500a8a4f1201bd8f45449da/biobb_structure_checking-3.5.2.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*)
2025-06-09T00:03:37,496   Skipping link: 3.5.2 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/9d/52/34f905209407f9a6e43c472919fb1ed241d2c500a8a4f1201bd8f45449da/biobb_structure_checking-3.5.2.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*)
2025-06-09T00:03:37,496   Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/a5/b8/c199ea26acefce9148b2f039228a6445bfd99cbf3baa5aac5d5de76d88d2/biobb_structure_checking-3.5.3-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*)
2025-06-09T00:03:37,497   Link requires a different Python (3.11.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/0a/40/352e4eef5795daea5bac5a015dec9895ae437a2cba75aed4a45e3af0ce76/biobb_structure_checking-3.5.3.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*)
2025-06-09T00:03:37,498   Skipping link: 3.5.3 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/0a/40/352e4eef5795daea5bac5a015dec9895ae437a2cba75aed4a45e3af0ce76/biobb_structure_checking-3.5.3.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*)
2025-06-09T00:03:37,498   Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/c6/02/0a7502c333f7ef180777f062b86d3802bd1b7acc0800a5be0a44cb2e1bea/biobb_structure_checking-3.7.0-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.5)
2025-06-09T00:03:37,499   Found link https://files.pythonhosted.org/packages/01/d5/3a6a5b347332136fa77b4e048c5ea413968e7766541a08e788616e6cc884/biobb_structure_checking-3.7.0.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.5), version: 3.7.0
2025-06-09T00:03:37,500   Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/04/20/62c497fbd09fea7e3e17d93fac41528fa00e20b86b2a785411daed8e0d8c/biobb_structure_checking-3.7.1-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.6)
2025-06-09T00:03:37,501   Found link https://files.pythonhosted.org/packages/e1/0c/d85d2e256e7334fc770afe5c3d1bbbe4bd894c238debb5475a488480a71f/biobb_structure_checking-3.7.1.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.6), version: 3.7.1
2025-06-09T00:03:37,502   Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/cb/e3/36d38b81e970b30abee8aeaa2aae2b1f071efb90d266de841a4897657df9/biobb_structure_checking-3.7.2-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.6)
2025-06-09T00:03:37,503   Found link https://files.pythonhosted.org/packages/73/1b/6e7ac71a64653cfca7ae3b5abe552196ae2f183612ccf1e09bd6c43dffa5/biobb_structure_checking-3.7.2.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.6), version: 3.7.2
2025-06-09T00:03:37,503   Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/14/13/b86da709765601df26fa02f5544618752a63b971aa84df4f09d0645329b4/biobb_structure_checking-3.7.3-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.6)
2025-06-09T00:03:37,504   Found link https://files.pythonhosted.org/packages/2f/3b/6c84094f4d47284252a2b36a24edd5020c6bffe7ad6882b4bd2ad1ddc1c7/biobb_structure_checking-3.7.3.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.6), version: 3.7.3
2025-06-09T00:03:37,505   Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/96/b0/27baedfeb1a59b91c5e956aff43c762db0352b90ba0ad05e7fef931e945c/biobb_structure_checking-3.8.5-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.6)
2025-06-09T00:03:37,505   Found link https://files.pythonhosted.org/packages/77/84/b4c70b2b7a8c93eb1898599d2b61f2b00222db03cd75ca4118b709cc2873/biobb_structure_checking-3.8.5.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.6), version: 3.8.5
2025-06-09T00:03:37,506   Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/1d/c7/612a643eb7abc559d85bf1750827088b8e2fe1fbeecf4cc646c7f8f2564f/biobb_structure_checking-3.9.1-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/)
2025-06-09T00:03:37,507   Found link https://files.pythonhosted.org/packages/e6/38/21bb54396edf2cb7180eb211377481094b70d61b61c0d04756d5ac4fe6f7/biobb_structure_checking-3.9.1.tar.gz (from https://pypi.org/simple/biobb-structure-checking/), version: 3.9.1
2025-06-09T00:03:37,507   Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/03/24/ebf324547ec33a1816e3bb1d671551b0257610211accacd51ea4fa1f9d41/biobb_structure_checking-3.9.2-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/)
2025-06-09T00:03:37,508   Found link https://files.pythonhosted.org/packages/24/5a/04f79bea3fd6c477e3076e70c493f0277bb2fb2dde9575d2100a7ac0c721/biobb_structure_checking-3.9.2.tar.gz (from https://pypi.org/simple/biobb-structure-checking/), version: 3.9.2
2025-06-09T00:03:37,509   Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/64/9e/5b91df4268be5674341a25631d5f446efbcb74984d325c4b2037f6646831/biobb_structure_checking-3.9.3-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/)
2025-06-09T00:03:37,510   Found link https://files.pythonhosted.org/packages/fb/95/41ad51225ef4f66aa2b595b1ec4923e75b2199e9a31467d8b0b7a7cf1190/biobb_structure_checking-3.9.3.tar.gz (from https://pypi.org/simple/biobb-structure-checking/), version: 3.9.3
2025-06-09T00:03:37,511   Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/4f/e2/a82501b69d348b016609c47216476450862c41d5679a730504b768f65129/biobb_structure_checking-3.9.4-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/)
2025-06-09T00:03:37,512   Found link https://files.pythonhosted.org/packages/4f/0b/ab4df0c146e3f235b2f39f1f3954be6ee5cd7b08ef879b744df02b2fc6f9/biobb_structure_checking-3.9.4.tar.gz (from https://pypi.org/simple/biobb-structure-checking/), version: 3.9.4
2025-06-09T00:03:37,513   Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/46/ea/7f62683b9cc07e88d6d045e346411e68b77169a6657134e1929dc6066d79/biobb_structure_checking-3.9.5-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*)
2025-06-09T00:03:37,513   Link requires a different Python (3.11.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/c8/99/054ece2e95dc0263a7ee17203cb525ae71cb8724bb301becdd4e715baa52/biobb_structure_checking-3.9.5.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*)
2025-06-09T00:03:37,514   Skipping link: 3.9.5 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/c8/99/054ece2e95dc0263a7ee17203cb525ae71cb8724bb301becdd4e715baa52/biobb_structure_checking-3.9.5.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*)
2025-06-09T00:03:37,515   Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/1c/bd/8302371439bb13682c5672fe1ad8536ad0f2a923bd404271c7afa910f7fb/biobb_structure_checking-3.9.6-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*)
2025-06-09T00:03:37,516   Link requires a different Python (3.11.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/bb/fe/e236e81b19172eb7829f9ae29b839c41105040be653b72daaca487d6e68a/biobb_structure_checking-3.9.6.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*)
2025-06-09T00:03:37,517   Skipping link: 3.9.6 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/bb/fe/e236e81b19172eb7829f9ae29b839c41105040be653b72daaca487d6e68a/biobb_structure_checking-3.9.6.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*)
2025-06-09T00:03:37,517   Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/64/d5/237d1124d415747be48aab373413ebcfa9b0b13b7ffae5ab9f841467ad0b/biobb_structure_checking-3.9.7-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*)
2025-06-09T00:03:37,518   Link requires a different Python (3.11.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/4a/27/b2741f68dcf6751719d17c9fdfd1cddfa3b2113a6921e92c59386404a525/biobb_structure_checking-3.9.7.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*)
2025-06-09T00:03:37,519   Skipping link: 3.9.7 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/4a/27/b2741f68dcf6751719d17c9fdfd1cddfa3b2113a6921e92c59386404a525/biobb_structure_checking-3.9.7.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*)
2025-06-09T00:03:37,520   Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/66/70/5120b3e3701cbe3e8e65d66aef5f599557394fcb0e3f55d622105ebc18e9/biobb_structure_checking-3.9.8-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*)
2025-06-09T00:03:37,521   Link requires a different Python (3.11.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/13/ea/4d959265413c7c1ff458688a842850b0ba3f48040a4cc1f70c5c74ad391f/biobb_structure_checking-3.9.8.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*)
2025-06-09T00:03:37,522   Skipping link: 3.9.8 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/13/ea/4d959265413c7c1ff458688a842850b0ba3f48040a4cc1f70c5c74ad391f/biobb_structure_checking-3.9.8.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*)
2025-06-09T00:03:37,522   Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/3d/2b/45b5ed3345d7075efef2fcde64fc19c836a56b0d60d234419fd04720a570/biobb_structure_checking-3.9.9-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*)
2025-06-09T00:03:37,523   Link requires a different Python (3.11.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/61/37/9b0ff6d7f2fa5f2a7e5ca2a614ade65edf33e3351c42b2d974896bd59932/biobb_structure_checking-3.9.9.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*)
2025-06-09T00:03:37,524   Skipping link: 3.9.9 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/61/37/9b0ff6d7f2fa5f2a7e5ca2a614ade65edf33e3351c42b2d974896bd59932/biobb_structure_checking-3.9.9.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*)
2025-06-09T00:03:37,525   Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/a3/43/cd861c5cc8ecc3476d8ae3e474acb8f98ab0c9da99b812d19c5451d00ccf/biobb_structure_checking-3.9.10-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*)
2025-06-09T00:03:37,526   Link requires a different Python (3.11.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/0d/31/19dc942015efa8dadb519d1a330054864eaa9178affd67cedaaa61160016/biobb_structure_checking-3.9.10.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*)
2025-06-09T00:03:37,527   Skipping link: 3.9.10 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/0d/31/19dc942015efa8dadb519d1a330054864eaa9178affd67cedaaa61160016/biobb_structure_checking-3.9.10.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*)
2025-06-09T00:03:37,527   Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/9e/99/6a7991ad252d275113a51e1225df5e202f3b99b4ebd86940c26d86e382d3/biobb_structure_checking-3.9.11-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*)
2025-06-09T00:03:37,528   Link requires a different Python (3.11.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/d0/ca/93e5d1f2d75b0f99a578bc7a0bb8519dc073e2905dec5a0a6e95d7e991a4/biobb_structure_checking-3.9.11.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*)
2025-06-09T00:03:37,529   Skipping link: 3.9.11 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/d0/ca/93e5d1f2d75b0f99a578bc7a0bb8519dc073e2905dec5a0a6e95d7e991a4/biobb_structure_checking-3.9.11.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*)
2025-06-09T00:03:37,529   Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/dc/66/9aee0a636ffa94d89c495468d61607790162ec26a278ec4cabb82410c93a/biobb_structure_checking-3.10.0-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.7)
2025-06-09T00:03:37,531   Found link https://files.pythonhosted.org/packages/0c/ad/2a27428424df13356f63f38ad70411199857e08a2e2cb1aa6e1d98d58d56/biobb_structure_checking-3.10.0.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.7), version: 3.10.0
2025-06-09T00:03:37,532   Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/2f/89/ab802a1e0ae870998435b8136529c43ca8eea9a106eacd170d547c5ccc6f/biobb_structure_checking-3.10.1-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.7)
2025-06-09T00:03:37,533   Found link https://files.pythonhosted.org/packages/a8/33/9ede62a4f16048d2a24d4261cdb6489ad653385e3ef851c9cbf904346493/biobb_structure_checking-3.10.1.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.7), version: 3.10.1
2025-06-09T00:03:37,533   Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/80/97/11822214f8649f0cf944468fe32461f46dc219b9a80c804cd93e2841496b/biobb_structure_checking-3.12.0-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.7)
2025-06-09T00:03:37,534   Found link https://files.pythonhosted.org/packages/f5/c1/8fe39123366ae2b1ff9806667185da01871878a3acc419d1f02fc0713aa0/biobb_structure_checking-3.12.0.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.7), version: 3.12.0
2025-06-09T00:03:37,535   Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/e0/72/0e3893b0ed4846d2237228c73378519a122e9e782bc0536bd3fc3be79501/biobb_structure_checking-3.12.1-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.7)
2025-06-09T00:03:37,536   Found link https://files.pythonhosted.org/packages/8e/a3/9e01147d4b0244435d143bdc70f6520b01394ae4622eecd7dfcec6f1ebcf/biobb_structure_checking-3.12.1.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.7), version: 3.12.1
2025-06-09T00:03:37,537   Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/c2/19/f28556efe1a066317fbe8ac794784e072e1971ae45ef27ca460f97cc0f23/biobb_structure_checking-3.13.0-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.7)
2025-06-09T00:03:37,537   Found link https://files.pythonhosted.org/packages/af/6b/580b883d738e617b7c12ae6eb5b02fc638be22b6abf67dc263927d48be6c/biobb_structure_checking-3.13.0.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.7), version: 3.13.0
2025-06-09T00:03:37,538   Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/ab/15/5a80821e138fdb530c89d24ef8d53d2283ac666a56f7c824cfbad94fd321/biobb_structure_checking-3.13.1-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.7)
2025-06-09T00:03:37,539   Found link https://files.pythonhosted.org/packages/78/3e/74d52a0ca14ee3a3cecc97011b790982d615897af38d20f4dde1a69603aa/biobb_structure_checking-3.13.1.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.7), version: 3.13.1
2025-06-09T00:03:37,540   Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/8e/77/0c113c7d98a63754e9ddd924485eef5576699663b81389a87bd9dcd4f15e/biobb_structure_checking-3.13.2-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.7)
2025-06-09T00:03:37,540   Found link https://files.pythonhosted.org/packages/cd/e6/3016f0682abfd34b50cea655736e859990d66cd1eaeaed9c734be264988e/biobb_structure_checking-3.13.2.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.7), version: 3.13.2
2025-06-09T00:03:37,541   Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/c5/34/68dc605be1c12c5ed5e1a43dfe56e021b4c4d2cfd0bf5b131e4d80f6262a/biobb_structure_checking-3.13.3-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.7)
2025-06-09T00:03:37,542   Found link https://files.pythonhosted.org/packages/71/92/5ecd16cb8297dd88ccbfbc73bf2684eaf07aea4c9b05fba10a972c4487fd/biobb_structure_checking-3.13.3.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.7), version: 3.13.3
2025-06-09T00:03:37,543   Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/42/30/c3abd1652f1ab2f01b9ea438b0398bb247f9d85e4cf193abcb38b68f4ef6/biobb_structure_checking-3.13.4-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.8)
2025-06-09T00:03:37,544   Found link https://files.pythonhosted.org/packages/52/c8/fbde8e5c8502699a5f85837298acefc14a198b31d30e3d87fde18fa6f169/biobb_structure_checking-3.13.4.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.8), version: 3.13.4
2025-06-09T00:03:37,545   Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/93/e8/c8eddb1e4996aebc703ed6344131861d54e763184f82a3b61c4dae4c68f2/biobb_structure_checking-3.13.5-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.8)
2025-06-09T00:03:37,546   Found link https://files.pythonhosted.org/packages/fb/27/8cf9b68cb39e063a373b87ba8881d888dd8b6449dfce5b6a3605f095128d/biobb_structure_checking-3.13.5.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.8), version: 3.13.5
2025-06-09T00:03:37,547   Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/93/46/c97cecdb5d82490f01e90458255d7afdd84d309e260f0a037757a9d898ae/biobb_structure_checking-3.15.6-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.8)
2025-06-09T00:03:37,548   Found link https://files.pythonhosted.org/packages/a2/86/ac0784d3a4a544ebc2275d36dd15daad21d079c0f7105d7001b4041df045/biobb_structure_checking-3.15.6.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.8), version: 3.15.6
2025-06-09T00:03:37,549 Fetching project page and analyzing links: https://www.piwheels.org/simple/biobb-structure-checking/
2025-06-09T00:03:37,550 Getting page https://www.piwheels.org/simple/biobb-structure-checking/
2025-06-09T00:03:37,551 Found index url https://www.piwheels.org/simple/
2025-06-09T00:03:37,722 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biobb-structure-checking/
2025-06-09T00:03:38,373 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biobb-structure-checking/
2025-06-09T00:03:39,564 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biobb-structure-checking/
2025-06-09T00:03:41,785 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biobb-structure-checking/
2025-06-09T00:03:45,992 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biobb-structure-checking/
2025-06-09T00:03:46,195 Could not fetch URL https://www.piwheels.org/simple/biobb-structure-checking/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/biobb-structure-checking/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping
2025-06-09T00:03:46,196 Skipping link: not a file: https://www.piwheels.org/simple/biobb-structure-checking/
2025-06-09T00:03:46,197 Skipping link: not a file: https://pypi.org/simple/biobb-structure-checking/
2025-06-09T00:03:46,216 Given no hashes to check 1 links for project 'biobb-structure-checking': discarding no candidates
2025-06-09T00:03:46,218 Collecting biobb-structure-checking==3.15.6
2025-06-09T00:03:46,221   Created temporary directory: /tmp/pip-unpack-hhzzko1j
2025-06-09T00:03:46,446   Downloading biobb_structure_checking-3.15.6.tar.gz (173 kB)
2025-06-09T00:03:46,679   Added biobb-structure-checking==3.15.6 from https://files.pythonhosted.org/packages/a2/86/ac0784d3a4a544ebc2275d36dd15daad21d079c0f7105d7001b4041df045/biobb_structure_checking-3.15.6.tar.gz to build tracker '/tmp/pip-build-tracker-71hmrf8k'
2025-06-09T00:03:46,681   Running setup.py (path:/tmp/pip-wheel-7jw_9odb/biobb-structure-checking_b912a117b37f460ea01c39f316c76db3/setup.py) egg_info for package biobb-structure-checking
2025-06-09T00:03:46,682   Created temporary directory: /tmp/pip-pip-egg-info-4_9bgxbb
2025-06-09T00:03:46,683   Preparing metadata (setup.py): started
2025-06-09T00:03:46,684   Running command python setup.py egg_info
2025-06-09T00:03:47,537   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-06-09T00:03:47,537   !!

2025-06-09T00:03:47,538           ********************************************************************************
2025-06-09T00:03:47,538           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-06-09T00:03:47,539           License :: OSI Approved :: Apache Software License

2025-06-09T00:03:47,540           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-06-09T00:03:47,541           ********************************************************************************

2025-06-09T00:03:47,542   !!
2025-06-09T00:03:47,542     self._finalize_license_expression()
2025-06-09T00:03:47,566   running egg_info
2025-06-09T00:03:47,594   creating /tmp/pip-pip-egg-info-4_9bgxbb/biobb_structure_checking.egg-info
2025-06-09T00:03:47,595   writing /tmp/pip-pip-egg-info-4_9bgxbb/biobb_structure_checking.egg-info/PKG-INFO
2025-06-09T00:03:47,599   writing dependency_links to /tmp/pip-pip-egg-info-4_9bgxbb/biobb_structure_checking.egg-info/dependency_links.txt
2025-06-09T00:03:47,600   writing entry points to /tmp/pip-pip-egg-info-4_9bgxbb/biobb_structure_checking.egg-info/entry_points.txt
2025-06-09T00:03:47,602   writing requirements to /tmp/pip-pip-egg-info-4_9bgxbb/biobb_structure_checking.egg-info/requires.txt
2025-06-09T00:03:47,603   writing top-level names to /tmp/pip-pip-egg-info-4_9bgxbb/biobb_structure_checking.egg-info/top_level.txt
2025-06-09T00:03:47,604   writing manifest file '/tmp/pip-pip-egg-info-4_9bgxbb/biobb_structure_checking.egg-info/SOURCES.txt'
2025-06-09T00:03:47,696   reading manifest file '/tmp/pip-pip-egg-info-4_9bgxbb/biobb_structure_checking.egg-info/SOURCES.txt'
2025-06-09T00:03:47,698   reading manifest template 'MANIFEST.in'
2025-06-09T00:03:47,713   adding license file 'LICENSE'
2025-06-09T00:03:47,717   writing manifest file '/tmp/pip-pip-egg-info-4_9bgxbb/biobb_structure_checking.egg-info/SOURCES.txt'
2025-06-09T00:03:47,822   Preparing metadata (setup.py): finished with status 'done'
2025-06-09T00:03:47,827   Source in /tmp/pip-wheel-7jw_9odb/biobb-structure-checking_b912a117b37f460ea01c39f316c76db3 has version 3.15.6, which satisfies requirement biobb-structure-checking==3.15.6 from https://files.pythonhosted.org/packages/a2/86/ac0784d3a4a544ebc2275d36dd15daad21d079c0f7105d7001b4041df045/biobb_structure_checking-3.15.6.tar.gz
2025-06-09T00:03:47,827   Removed biobb-structure-checking==3.15.6 from https://files.pythonhosted.org/packages/a2/86/ac0784d3a4a544ebc2275d36dd15daad21d079c0f7105d7001b4041df045/biobb_structure_checking-3.15.6.tar.gz from build tracker '/tmp/pip-build-tracker-71hmrf8k'
2025-06-09T00:03:47,834 Created temporary directory: /tmp/pip-unpack-ki34g633
2025-06-09T00:03:47,835 Created temporary directory: /tmp/pip-unpack-k7dx165w
2025-06-09T00:03:47,836 Building wheels for collected packages: biobb-structure-checking
2025-06-09T00:03:47,840   Created temporary directory: /tmp/pip-wheel-h_axv7zq
2025-06-09T00:03:47,841   DEPRECATION: Building 'biobb-structure-checking' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'biobb-structure-checking'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-06-09T00:03:47,842   Building wheel for biobb-structure-checking (setup.py): started
2025-06-09T00:03:47,844   Destination directory: /tmp/pip-wheel-h_axv7zq
2025-06-09T00:03:47,844   Running command python setup.py bdist_wheel
2025-06-09T00:03:48,665   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-06-09T00:03:48,665   !!

2025-06-09T00:03:48,666           ********************************************************************************
2025-06-09T00:03:48,667           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-06-09T00:03:48,667           License :: OSI Approved :: Apache Software License

2025-06-09T00:03:48,669           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-06-09T00:03:48,669           ********************************************************************************

2025-06-09T00:03:48,670   !!
2025-06-09T00:03:48,671     self._finalize_license_expression()
2025-06-09T00:03:48,671   running bdist_wheel
2025-06-09T00:03:48,800   running build
2025-06-09T00:03:48,800   running build_py
2025-06-09T00:03:48,831   creating build/lib/biobb_structure_checking
2025-06-09T00:03:48,833   copying biobb_structure_checking/check_structure.py -> build/lib/biobb_structure_checking
2025-06-09T00:03:48,835   copying biobb_structure_checking/mutation_manager.py -> build/lib/biobb_structure_checking
2025-06-09T00:03:48,837   copying biobb_structure_checking/modeller_manager.py -> build/lib/biobb_structure_checking
2025-06-09T00:03:48,840   copying biobb_structure_checking/structure_manager.py -> build/lib/biobb_structure_checking
2025-06-09T00:03:48,843   copying biobb_structure_checking/__init__.py -> build/lib/biobb_structure_checking
2025-06-09T00:03:48,845   copying biobb_structure_checking/structure_checking.py -> build/lib/biobb_structure_checking
2025-06-09T00:03:48,848   copying biobb_structure_checking/constants.py -> build/lib/biobb_structure_checking
2025-06-09T00:03:48,851   creating build/lib/biobb_structure_checking/pdbio
2025-06-09T00:03:48,852   copying biobb_structure_checking/pdbio/json_writer.py -> build/lib/biobb_structure_checking/pdbio
2025-06-09T00:03:48,854   copying biobb_structure_checking/pdbio/PDBIO_extended.py -> build/lib/biobb_structure_checking/pdbio
2025-06-09T00:03:48,857   copying biobb_structure_checking/pdbio/param_input.py -> build/lib/biobb_structure_checking/pdbio
2025-06-09T00:03:48,859   copying biobb_structure_checking/pdbio/bare_builder.py -> build/lib/biobb_structure_checking/pdbio
2025-06-09T00:03:48,861   copying biobb_structure_checking/pdbio/__init__.py -> build/lib/biobb_structure_checking/pdbio
2025-06-09T00:03:48,863   copying biobb_structure_checking/pdbio/mmb_server.py -> build/lib/biobb_structure_checking/pdbio
2025-06-09T00:03:48,866   creating build/lib/biobb_structure_checking/commands
2025-06-09T00:03:48,867   copying biobb_structure_checking/commands/fixside.py -> build/lib/biobb_structure_checking/commands
2025-06-09T00:03:48,869   copying biobb_structure_checking/commands/cistransbck.py -> build/lib/biobb_structure_checking/commands
2025-06-09T00:03:48,872   copying biobb_structure_checking/commands/sequences.py -> build/lib/biobb_structure_checking/commands
2025-06-09T00:03:48,873   copying biobb_structure_checking/commands/getss.py -> build/lib/biobb_structure_checking/commands
2025-06-09T00:03:48,875   copying biobb_structure_checking/commands/mutateside.py -> build/lib/biobb_structure_checking/commands
2025-06-09T00:03:48,877   copying biobb_structure_checking/commands/models.py -> build/lib/biobb_structure_checking/commands
2025-06-09T00:03:48,879   copying biobb_structure_checking/commands/clashes.py -> build/lib/biobb_structure_checking/commands
2025-06-09T00:03:48,881   copying biobb_structure_checking/commands/metals.py -> build/lib/biobb_structure_checking/commands
2025-06-09T00:03:48,883   copying biobb_structure_checking/commands/ligands.py -> build/lib/biobb_structure_checking/commands
2025-06-09T00:03:48,885   copying biobb_structure_checking/commands/altloc.py -> build/lib/biobb_structure_checking/commands
2025-06-09T00:03:48,887   copying biobb_structure_checking/commands/amide.py -> build/lib/biobb_structure_checking/commands
2025-06-09T00:03:48,889   copying biobb_structure_checking/commands/chiral_bck.py -> build/lib/biobb_structure_checking/commands
2025-06-09T00:03:48,891   copying biobb_structure_checking/commands/__init__.py -> build/lib/biobb_structure_checking/commands
2025-06-09T00:03:48,893   copying biobb_structure_checking/commands/water.py -> build/lib/biobb_structure_checking/commands
2025-06-09T00:03:48,894   copying biobb_structure_checking/commands/inscodes.py -> build/lib/biobb_structure_checking/commands
2025-06-09T00:03:48,896   copying biobb_structure_checking/commands/backbone.py -> build/lib/biobb_structure_checking/commands
2025-06-09T00:03:48,899   copying biobb_structure_checking/commands/chains.py -> build/lib/biobb_structure_checking/commands
2025-06-09T00:03:48,901   copying biobb_structure_checking/commands/chiral.py -> build/lib/biobb_structure_checking/commands
2025-06-09T00:03:48,903   copying biobb_structure_checking/commands/add_hydrogen.py -> build/lib/biobb_structure_checking/commands
2025-06-09T00:03:48,905   copying biobb_structure_checking/commands/rem_hydrogen.py -> build/lib/biobb_structure_checking/commands
2025-06-09T00:03:48,908   creating build/lib/biobb_structure_checking/libs
2025-06-09T00:03:48,909   copying biobb_structure_checking/libs/data_lib_manager.py -> build/lib/biobb_structure_checking/libs
2025-06-09T00:03:48,912   copying biobb_structure_checking/libs/residue_lib_manager.py -> build/lib/biobb_structure_checking/libs
2025-06-09T00:03:48,914   copying biobb_structure_checking/libs/__init__.py -> build/lib/biobb_structure_checking/libs
2025-06-09T00:03:48,916   creating build/lib/biobb_structure_checking/modelling
2025-06-09T00:03:48,917   copying biobb_structure_checking/modelling/sequencedata.py -> build/lib/biobb_structure_checking/modelling
2025-06-09T00:03:48,920   copying biobb_structure_checking/modelling/chainsdata.py -> build/lib/biobb_structure_checking/modelling
2025-06-09T00:03:48,923   copying biobb_structure_checking/modelling/utils.py -> build/lib/biobb_structure_checking/modelling
2025-06-09T00:03:48,926   copying biobb_structure_checking/modelling/__init__.py -> build/lib/biobb_structure_checking/modelling
2025-06-09T00:03:48,928   copying biobb_structure_checking/modelling/residue_set.py -> build/lib/biobb_structure_checking/modelling
2025-06-09T00:03:48,929   copying biobb_structure_checking/modelling/structuredata.py -> build/lib/biobb_structure_checking/modelling
2025-06-09T00:03:48,932   copying biobb_structure_checking/modelling/modelsdata.py -> build/lib/biobb_structure_checking/modelling
2025-06-09T00:03:48,933   running egg_info
2025-06-09T00:03:48,962   writing biobb_structure_checking.egg-info/PKG-INFO
2025-06-09T00:03:48,965   writing dependency_links to biobb_structure_checking.egg-info/dependency_links.txt
2025-06-09T00:03:48,967   writing entry points to biobb_structure_checking.egg-info/entry_points.txt
2025-06-09T00:03:48,969   writing requirements to biobb_structure_checking.egg-info/requires.txt
2025-06-09T00:03:48,970   writing top-level names to biobb_structure_checking.egg-info/top_level.txt
2025-06-09T00:03:49,005   reading manifest file 'biobb_structure_checking.egg-info/SOURCES.txt'
2025-06-09T00:03:49,010   reading manifest template 'MANIFEST.in'
2025-06-09T00:03:49,025   adding license file 'LICENSE'
2025-06-09T00:03:49,030   writing manifest file 'biobb_structure_checking.egg-info/SOURCES.txt'
2025-06-09T00:03:49,033   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_structure_checking.dat' is absent from the `packages` configuration.
2025-06-09T00:03:49,034   !!

2025-06-09T00:03:49,035           ********************************************************************************
2025-06-09T00:03:49,035           ############################
2025-06-09T00:03:49,036           # Package would be ignored #
2025-06-09T00:03:49,037           ############################
2025-06-09T00:03:49,037           Python recognizes 'biobb_structure_checking.dat' as an importable package[^1],
2025-06-09T00:03:49,038           but it is absent from setuptools' `packages` configuration.

2025-06-09T00:03:49,039           This leads to an ambiguous overall configuration. If you want to distribute this
2025-06-09T00:03:49,040           package, please make sure that 'biobb_structure_checking.dat' is explicitly added
2025-06-09T00:03:49,040           to the `packages` configuration field.

2025-06-09T00:03:49,041           Alternatively, you can also rely on setuptools' discovery methods
2025-06-09T00:03:49,042           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-06-09T00:03:49,042           instead of `find_packages(...)`/`find:`).

2025-06-09T00:03:49,043           You can read more about "package discovery" on setuptools documentation page:

2025-06-09T00:03:49,044           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-06-09T00:03:49,045           If you don't want 'biobb_structure_checking.dat' to be distributed and are
2025-06-09T00:03:49,045           already explicitly excluding 'biobb_structure_checking.dat' via
2025-06-09T00:03:49,046           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-06-09T00:03:49,046           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-06-09T00:03:49,047           combination with a more fine grained `package-data` configuration.

2025-06-09T00:03:49,048           You can read more about "package data files" on setuptools documentation page:

2025-06-09T00:03:49,048           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-06-09T00:03:49,050           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-06-09T00:03:49,050                 even if it does not contain any `.py` files.
2025-06-09T00:03:49,051                 On the other hand, currently there is no concept of package data
2025-06-09T00:03:49,053                 directory, all directories are treated like packages.
2025-06-09T00:03:49,054           ********************************************************************************

2025-06-09T00:03:49,055   !!
2025-06-09T00:03:49,056     check.warn(importable)
2025-06-09T00:03:49,056   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'biobb_structure_checking.dat.modRes' is absent from the `packages` configuration.
2025-06-09T00:03:49,057   !!

2025-06-09T00:03:49,058           ********************************************************************************
2025-06-09T00:03:49,060           ############################
2025-06-09T00:03:49,061           # Package would be ignored #
2025-06-09T00:03:49,062           ############################
2025-06-09T00:03:49,063           Python recognizes 'biobb_structure_checking.dat.modRes' as an importable package[^1],
2025-06-09T00:03:49,063           but it is absent from setuptools' `packages` configuration.

2025-06-09T00:03:49,064           This leads to an ambiguous overall configuration. If you want to distribute this
2025-06-09T00:03:49,065           package, please make sure that 'biobb_structure_checking.dat.modRes' is explicitly added
2025-06-09T00:03:49,065           to the `packages` configuration field.

2025-06-09T00:03:49,067           Alternatively, you can also rely on setuptools' discovery methods
2025-06-09T00:03:49,067           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-06-09T00:03:49,068           instead of `find_packages(...)`/`find:`).

2025-06-09T00:03:49,069           You can read more about "package discovery" on setuptools documentation page:

2025-06-09T00:03:49,071           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-06-09T00:03:49,072           If you don't want 'biobb_structure_checking.dat.modRes' to be distributed and are
2025-06-09T00:03:49,073           already explicitly excluding 'biobb_structure_checking.dat.modRes' via
2025-06-09T00:03:49,073           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-06-09T00:03:49,074           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-06-09T00:03:49,075           combination with a more fine grained `package-data` configuration.

2025-06-09T00:03:49,076           You can read more about "package data files" on setuptools documentation page:

2025-06-09T00:03:49,077           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-06-09T00:03:49,078           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-06-09T00:03:49,078                 even if it does not contain any `.py` files.
2025-06-09T00:03:49,079                 On the other hand, currently there is no concept of package data
2025-06-09T00:03:49,079                 directory, all directories are treated like packages.
2025-06-09T00:03:49,080           ********************************************************************************

2025-06-09T00:03:49,082   !!
2025-06-09T00:03:49,083     check.warn(importable)
2025-06-09T00:03:49,083   copying biobb_structure_checking/py.typed -> build/lib/biobb_structure_checking
2025-06-09T00:03:49,084   creating build/lib/biobb_structure_checking/dat
2025-06-09T00:03:49,084   copying biobb_structure_checking/dat/ADT_prm.json -> build/lib/biobb_structure_checking/dat
2025-06-09T00:03:49,085   copying biobb_structure_checking/dat/CMIP_prm.json -> build/lib/biobb_structure_checking/dat
2025-06-09T00:03:49,085   copying biobb_structure_checking/dat/all_residues.in -> build/lib/biobb_structure_checking/dat
2025-06-09T00:03:49,086   copying biobb_structure_checking/dat/commands.hlp -> build/lib/biobb_structure_checking/dat
2025-06-09T00:03:49,088   copying biobb_structure_checking/dat/data_lib.json -> build/lib/biobb_structure_checking/dat
2025-06-09T00:03:49,088   creating build/lib/biobb_structure_checking/dat/modRes
2025-06-09T00:03:49,089   copying biobb_structure_checking/dat/modRes/modSER.json -> build/lib/biobb_structure_checking/dat/modRes
2025-06-09T00:03:49,090   copying biobb_structure_checking/dat/modRes/modTHR.json -> build/lib/biobb_structure_checking/dat/modRes
2025-06-09T00:03:49,091   copying biobb_structure_checking/dat/modRes/modTYR.json -> build/lib/biobb_structure_checking/dat/modRes
2025-06-09T00:03:49,093   copying biobb_structure_checking/dat/modRes/modres.json -> build/lib/biobb_structure_checking/dat/modRes
2025-06-09T00:03:49,093   copying biobb_structure_checking/dat/modRes/modres_phospho.json -> build/lib/biobb_structure_checking/dat/modRes
2025-06-09T00:03:49,119   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-06-09T00:03:49,120   !!

2025-06-09T00:03:49,121           ********************************************************************************
2025-06-09T00:03:49,122           Please avoid running ``setup.py`` directly.
2025-06-09T00:03:49,122           Instead, use pypa/build, pypa/installer or other
2025-06-09T00:03:49,123           standards-based tools.

2025-06-09T00:03:49,124           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-06-09T00:03:49,125           or your builds will no longer be supported.

2025-06-09T00:03:49,126           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-06-09T00:03:49,127           ********************************************************************************

2025-06-09T00:03:49,128   !!
2025-06-09T00:03:49,128     self.initialize_options()
2025-06-09T00:03:49,148   installing to build/bdist.linux-armv7l/wheel
2025-06-09T00:03:49,149   running install
2025-06-09T00:03:49,172   running install_lib
2025-06-09T00:03:49,200   creating build/bdist.linux-armv7l/wheel
2025-06-09T00:03:49,203   creating build/bdist.linux-armv7l/wheel/biobb_structure_checking
2025-06-09T00:03:49,204   copying build/lib/biobb_structure_checking/check_structure.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking
2025-06-09T00:03:49,207   creating build/bdist.linux-armv7l/wheel/biobb_structure_checking/dat
2025-06-09T00:03:49,208   copying build/lib/biobb_structure_checking/dat/data_lib.json -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/dat
2025-06-09T00:03:49,212   copying build/lib/biobb_structure_checking/dat/CMIP_prm.json -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/dat
2025-06-09T00:03:49,214   copying build/lib/biobb_structure_checking/dat/commands.hlp -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/dat
2025-06-09T00:03:49,216   copying build/lib/biobb_structure_checking/dat/ADT_prm.json -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/dat
2025-06-09T00:03:49,218   copying build/lib/biobb_structure_checking/dat/all_residues.in -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/dat
2025-06-09T00:03:49,225   creating build/bdist.linux-armv7l/wheel/biobb_structure_checking/dat/modRes
2025-06-09T00:03:49,226   copying build/lib/biobb_structure_checking/dat/modRes/modres_phospho.json -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/dat/modRes
2025-06-09T00:03:49,232   copying build/lib/biobb_structure_checking/dat/modRes/modres.json -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/dat/modRes
2025-06-09T00:03:49,239   copying build/lib/biobb_structure_checking/dat/modRes/modSER.json -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/dat/modRes
2025-06-09T00:03:49,241   copying build/lib/biobb_structure_checking/dat/modRes/modTHR.json -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/dat/modRes
2025-06-09T00:03:49,243   copying build/lib/biobb_structure_checking/dat/modRes/modTYR.json -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/dat/modRes
2025-06-09T00:03:49,246   creating build/bdist.linux-armv7l/wheel/biobb_structure_checking/pdbio
2025-06-09T00:03:49,247   copying build/lib/biobb_structure_checking/pdbio/json_writer.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/pdbio
2025-06-09T00:03:49,249   copying build/lib/biobb_structure_checking/pdbio/PDBIO_extended.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/pdbio
2025-06-09T00:03:49,252   copying build/lib/biobb_structure_checking/pdbio/param_input.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/pdbio
2025-06-09T00:03:49,254   copying build/lib/biobb_structure_checking/pdbio/bare_builder.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/pdbio
2025-06-09T00:03:49,256   copying build/lib/biobb_structure_checking/pdbio/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/pdbio
2025-06-09T00:03:49,258   copying build/lib/biobb_structure_checking/pdbio/mmb_server.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/pdbio
2025-06-09T00:03:49,261   copying build/lib/biobb_structure_checking/mutation_manager.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking
2025-06-09T00:03:49,263   copying build/lib/biobb_structure_checking/modeller_manager.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking
2025-06-09T00:03:49,266   copying build/lib/biobb_structure_checking/structure_manager.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking
2025-06-09T00:03:49,270   creating build/bdist.linux-armv7l/wheel/biobb_structure_checking/commands
2025-06-09T00:03:49,271   copying build/lib/biobb_structure_checking/commands/fixside.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands
2025-06-09T00:03:49,274   copying build/lib/biobb_structure_checking/commands/cistransbck.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands
2025-06-09T00:03:49,276   copying build/lib/biobb_structure_checking/commands/sequences.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands
2025-06-09T00:03:49,277   copying build/lib/biobb_structure_checking/commands/getss.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands
2025-06-09T00:03:49,279   copying build/lib/biobb_structure_checking/commands/mutateside.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands
2025-06-09T00:03:49,282   copying build/lib/biobb_structure_checking/commands/models.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands
2025-06-09T00:03:49,284   copying build/lib/biobb_structure_checking/commands/clashes.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands
2025-06-09T00:03:49,285   copying build/lib/biobb_structure_checking/commands/metals.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands
2025-06-09T00:03:49,287   copying build/lib/biobb_structure_checking/commands/ligands.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands
2025-06-09T00:03:49,289   copying build/lib/biobb_structure_checking/commands/altloc.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands
2025-06-09T00:03:49,291   copying build/lib/biobb_structure_checking/commands/amide.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands
2025-06-09T00:03:49,293   copying build/lib/biobb_structure_checking/commands/chiral_bck.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands
2025-06-09T00:03:49,295   copying build/lib/biobb_structure_checking/commands/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands
2025-06-09T00:03:49,297   copying build/lib/biobb_structure_checking/commands/water.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands
2025-06-09T00:03:49,299   copying build/lib/biobb_structure_checking/commands/inscodes.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands
2025-06-09T00:03:49,300   copying build/lib/biobb_structure_checking/commands/backbone.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands
2025-06-09T00:03:49,303   copying build/lib/biobb_structure_checking/commands/chains.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands
2025-06-09T00:03:49,305   copying build/lib/biobb_structure_checking/commands/chiral.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands
2025-06-09T00:03:49,307   copying build/lib/biobb_structure_checking/commands/add_hydrogen.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands
2025-06-09T00:03:49,309   copying build/lib/biobb_structure_checking/commands/rem_hydrogen.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands
2025-06-09T00:03:49,311   copying build/lib/biobb_structure_checking/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking
2025-06-09T00:03:49,313   copying build/lib/biobb_structure_checking/structure_checking.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking
2025-06-09T00:03:49,316   copying build/lib/biobb_structure_checking/constants.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking
2025-06-09T00:03:49,319   creating build/bdist.linux-armv7l/wheel/biobb_structure_checking/libs
2025-06-09T00:03:49,320   copying build/lib/biobb_structure_checking/libs/data_lib_manager.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/libs
2025-06-09T00:03:49,323   copying build/lib/biobb_structure_checking/libs/residue_lib_manager.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/libs
2025-06-09T00:03:49,325   copying build/lib/biobb_structure_checking/libs/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/libs
2025-06-09T00:03:49,327   copying build/lib/biobb_structure_checking/py.typed -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking
2025-06-09T00:03:49,329   creating build/bdist.linux-armv7l/wheel/biobb_structure_checking/modelling
2025-06-09T00:03:49,330   copying build/lib/biobb_structure_checking/modelling/sequencedata.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/modelling
2025-06-09T00:03:49,333   copying build/lib/biobb_structure_checking/modelling/chainsdata.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/modelling
2025-06-09T00:03:49,336   copying build/lib/biobb_structure_checking/modelling/utils.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/modelling
2025-06-09T00:03:49,339   copying build/lib/biobb_structure_checking/modelling/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/modelling
2025-06-09T00:03:49,341   copying build/lib/biobb_structure_checking/modelling/residue_set.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/modelling
2025-06-09T00:03:49,342   copying build/lib/biobb_structure_checking/modelling/structuredata.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/modelling
2025-06-09T00:03:49,345   copying build/lib/biobb_structure_checking/modelling/modelsdata.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/modelling
2025-06-09T00:03:49,347   running install_egg_info
2025-06-09T00:03:49,382   Copying biobb_structure_checking.egg-info to build/bdist.linux-armv7l/wheel/./biobb_structure_checking-3.15.6-py3.11.egg-info
2025-06-09T00:03:49,394   running install_scripts
2025-06-09T00:03:49,409   creating build/bdist.linux-armv7l/wheel/biobb_structure_checking-3.15.6.dist-info/WHEEL
2025-06-09T00:03:49,411   creating '/tmp/pip-wheel-h_axv7zq/biobb_structure_checking-3.15.6-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-06-09T00:03:49,414   adding 'biobb_structure_checking/__init__.py'
2025-06-09T00:03:49,415   adding 'biobb_structure_checking/check_structure.py'
2025-06-09T00:03:49,418   adding 'biobb_structure_checking/constants.py'
2025-06-09T00:03:49,420   adding 'biobb_structure_checking/modeller_manager.py'
2025-06-09T00:03:49,422   adding 'biobb_structure_checking/mutation_manager.py'
2025-06-09T00:03:49,423   adding 'biobb_structure_checking/py.typed'
2025-06-09T00:03:49,426   adding 'biobb_structure_checking/structure_checking.py'
2025-06-09T00:03:49,435   adding 'biobb_structure_checking/structure_manager.py'
2025-06-09T00:03:49,437   adding 'biobb_structure_checking/commands/__init__.py'
2025-06-09T00:03:49,438   adding 'biobb_structure_checking/commands/add_hydrogen.py'
2025-06-09T00:03:49,440   adding 'biobb_structure_checking/commands/altloc.py'
2025-06-09T00:03:49,441   adding 'biobb_structure_checking/commands/amide.py'
2025-06-09T00:03:49,443   adding 'biobb_structure_checking/commands/backbone.py'
2025-06-09T00:03:49,445   adding 'biobb_structure_checking/commands/chains.py'
2025-06-09T00:03:49,446   adding 'biobb_structure_checking/commands/chiral.py'
2025-06-09T00:03:49,448   adding 'biobb_structure_checking/commands/chiral_bck.py'
2025-06-09T00:03:49,449   adding 'biobb_structure_checking/commands/cistransbck.py'
2025-06-09T00:03:49,450   adding 'biobb_structure_checking/commands/clashes.py'
2025-06-09T00:03:49,452   adding 'biobb_structure_checking/commands/fixside.py'
2025-06-09T00:03:49,453   adding 'biobb_structure_checking/commands/getss.py'
2025-06-09T00:03:49,454   adding 'biobb_structure_checking/commands/inscodes.py'
2025-06-09T00:03:49,456   adding 'biobb_structure_checking/commands/ligands.py'
2025-06-09T00:03:49,457   adding 'biobb_structure_checking/commands/metals.py'
2025-06-09T00:03:49,458   adding 'biobb_structure_checking/commands/models.py'
2025-06-09T00:03:49,460   adding 'biobb_structure_checking/commands/mutateside.py'
2025-06-09T00:03:49,461   adding 'biobb_structure_checking/commands/rem_hydrogen.py'
2025-06-09T00:03:49,462   adding 'biobb_structure_checking/commands/sequences.py'
2025-06-09T00:03:49,464   adding 'biobb_structure_checking/commands/water.py'
2025-06-09T00:03:49,466   adding 'biobb_structure_checking/dat/ADT_prm.json'
2025-06-09T00:03:49,467   adding 'biobb_structure_checking/dat/CMIP_prm.json'
2025-06-09T00:03:49,485   adding 'biobb_structure_checking/dat/all_residues.in'
2025-06-09T00:03:49,488   adding 'biobb_structure_checking/dat/commands.hlp'
2025-06-09T00:03:49,493   adding 'biobb_structure_checking/dat/data_lib.json'
2025-06-09T00:03:49,495   adding 'biobb_structure_checking/dat/modRes/modSER.json'
2025-06-09T00:03:49,497   adding 'biobb_structure_checking/dat/modRes/modTHR.json'
2025-06-09T00:03:49,498   adding 'biobb_structure_checking/dat/modRes/modTYR.json'
2025-06-09T00:03:49,511   adding 'biobb_structure_checking/dat/modRes/modres.json'
2025-06-09T00:03:49,525   adding 'biobb_structure_checking/dat/modRes/modres_phospho.json'
2025-06-09T00:03:49,528   adding 'biobb_structure_checking/libs/__init__.py'
2025-06-09T00:03:49,529   adding 'biobb_structure_checking/libs/data_lib_manager.py'
2025-06-09T00:03:49,531   adding 'biobb_structure_checking/libs/residue_lib_manager.py'
2025-06-09T00:03:49,532   adding 'biobb_structure_checking/modelling/__init__.py'
2025-06-09T00:03:49,535   adding 'biobb_structure_checking/modelling/chainsdata.py'
2025-06-09T00:03:49,536   adding 'biobb_structure_checking/modelling/modelsdata.py'
2025-06-09T00:03:49,537   adding 'biobb_structure_checking/modelling/residue_set.py'
2025-06-09T00:03:49,540   adding 'biobb_structure_checking/modelling/sequencedata.py'
2025-06-09T00:03:49,542   adding 'biobb_structure_checking/modelling/structuredata.py'
2025-06-09T00:03:49,547   adding 'biobb_structure_checking/modelling/utils.py'
2025-06-09T00:03:49,549   adding 'biobb_structure_checking/pdbio/PDBIO_extended.py'
2025-06-09T00:03:49,550   adding 'biobb_structure_checking/pdbio/__init__.py'
2025-06-09T00:03:49,551   adding 'biobb_structure_checking/pdbio/bare_builder.py'
2025-06-09T00:03:49,552   adding 'biobb_structure_checking/pdbio/json_writer.py'
2025-06-09T00:03:49,554   adding 'biobb_structure_checking/pdbio/mmb_server.py'
2025-06-09T00:03:49,556   adding 'biobb_structure_checking/pdbio/param_input.py'
2025-06-09T00:03:49,559   adding 'biobb_structure_checking-3.15.6.dist-info/licenses/LICENSE'
2025-06-09T00:03:49,561   adding 'biobb_structure_checking-3.15.6.dist-info/METADATA'
2025-06-09T00:03:49,562   adding 'biobb_structure_checking-3.15.6.dist-info/WHEEL'
2025-06-09T00:03:49,563   adding 'biobb_structure_checking-3.15.6.dist-info/entry_points.txt'
2025-06-09T00:03:49,563   adding 'biobb_structure_checking-3.15.6.dist-info/top_level.txt'
2025-06-09T00:03:49,565   adding 'biobb_structure_checking-3.15.6.dist-info/RECORD'
2025-06-09T00:03:49,569   removing build/bdist.linux-armv7l/wheel
2025-06-09T00:03:49,692   Building wheel for biobb-structure-checking (setup.py): finished with status 'done'
2025-06-09T00:03:49,696   Created wheel for biobb-structure-checking: filename=biobb_structure_checking-3.15.6-py3-none-any.whl size=196133 sha256=c09b75b465fa7da9c888d5a32c787bef17f284d6fd4bad76e4183b5ce5c3d8f1
2025-06-09T00:03:49,697   Stored in directory: /tmp/pip-ephem-wheel-cache-r4it10p4/wheels/b4/13/69/ab4a75bdc6d8057f97479ad893b3874697b32b2775f048cb97
2025-06-09T00:03:49,710 Successfully built biobb-structure-checking
2025-06-09T00:03:49,718 Removed build tracker: '/tmp/pip-build-tracker-71hmrf8k'