2025-06-10T01:48:00,640 Created temporary directory: /tmp/pip-build-tracker-a70300g1
2025-06-10T01:48:00,641 Initialized build tracking at /tmp/pip-build-tracker-a70300g1
2025-06-10T01:48:00,642 Created build tracker: /tmp/pip-build-tracker-a70300g1
2025-06-10T01:48:00,643 Entered build tracker: /tmp/pip-build-tracker-a70300g1
2025-06-10T01:48:00,644 Created temporary directory: /tmp/pip-wheel-3o7fcxfv
2025-06-10T01:48:00,648 Created temporary directory: /tmp/pip-ephem-wheel-cache-6ucquhab
2025-06-10T01:48:00,699 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-06-10T01:48:00,702 2 location(s) to search for versions of strucgap:
2025-06-10T01:48:00,702 * https://pypi.org/simple/strucgap/
2025-06-10T01:48:00,702 * https://www.piwheels.org/simple/strucgap/
2025-06-10T01:48:00,703 Fetching project page and analyzing links: https://pypi.org/simple/strucgap/
2025-06-10T01:48:00,704 Getting page https://pypi.org/simple/strucgap/
2025-06-10T01:48:00,705 Found index url https://pypi.org/simple/
2025-06-10T01:48:00,941 Fetched page https://pypi.org/simple/strucgap/ as application/vnd.pypi.simple.v1+json
2025-06-10T01:48:00,944   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/d4/cf/908ee965464dceab500051b070d301fc648f14f165918a250643f754312c/strucgap-1.0.1-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-10T01:48:00,945   Found link https://files.pythonhosted.org/packages/e4/ed/c84c67d5cb18aa5d6c871bc5abb254e198230535214a7cf8f003ecf813ae/strucgap-1.0.1.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.1
2025-06-10T01:48:00,946   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/e6/0a/417b6b5e0043e5a5e92598e60b289e11bbf3a1921db8a06967ac26c821ab/strucgap-1.0.2-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-10T01:48:00,946   Found link https://files.pythonhosted.org/packages/80/b5/c0a8aca19ac9b3b37852926dab5aef22813bfb7db17e022907b7513751cd/strucgap-1.0.2.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.2
2025-06-10T01:48:00,947   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/6c/8a/8046fc9d7585c40b76f94bcc0f51462b26b460ef72eaba283adc359b1414/strucgap-1.0.3-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-10T01:48:00,948   Found link https://files.pythonhosted.org/packages/36/64/97df6dbf736d30b1ed5a0f11b09513d266c5451783575b47fadd5ba720f7/strucgap-1.0.3.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.3
2025-06-10T01:48:00,948   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/4c/cf/29374aca5d9a6e4dcb92da71d7c737883fea9dc0c784add2f46b047bcdb3/strucgap-1.0.4-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-10T01:48:00,949   Found link https://files.pythonhosted.org/packages/f7/a4/54678a7f65da22ad9bf8c1fbc22ff415a1c4c59b190aa2cc0ab02bc71a27/strucgap-1.0.4.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.4
2025-06-10T01:48:00,950   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/3e/0a/acfe362babd9946aee23c5c9b973b22704fdd4625b21d3aefc3158469a8f/strucgap-1.0.5-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-10T01:48:00,951   Found link https://files.pythonhosted.org/packages/31/14/c9640736615f7b3cd7300f1146d0f6c3c707a24e604b663635e89fb72f74/strucgap-1.0.5.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.5
2025-06-10T01:48:00,951   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/19/2b/a229156141e4f96b442c92afa912d9dc7ff7ca93d4fd40498b412eb2e492/strucgap-1.0.6-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-10T01:48:00,952   Found link https://files.pythonhosted.org/packages/47/e1/49002ee8fee4ea83a29298aeadb5da1cad51e30702a716412b435796e909/strucgap-1.0.6.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.6
2025-06-10T01:48:00,953   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/f5/96/a6e1a5e8ddaa8319d34850b3a6ee7abc4cb4a45cab48147b26c76a355af2/strucgap-1.0.7-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-10T01:48:00,954   Found link https://files.pythonhosted.org/packages/61/54/ca1a7a265a6b1ab75b75bd1d707aa4d66a91f69dd4491dbcd23a5b1d96bc/strucgap-1.0.7.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.7
2025-06-10T01:48:00,954   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/a5/9d/28f80481e570ce67b245dc87afdefa13a5a3200a6f53baccfdd8d7683250/strucgap-1.0.8-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-10T01:48:00,955   Found link https://files.pythonhosted.org/packages/f3/20/5427f3d9632c77f35f2d3d0565ebdf4c63366100b5c96fa50ebdfcc6a8a2/strucgap-1.0.8.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.8
2025-06-10T01:48:00,956 Fetching project page and analyzing links: https://www.piwheels.org/simple/strucgap/
2025-06-10T01:48:00,956 Getting page https://www.piwheels.org/simple/strucgap/
2025-06-10T01:48:00,958 Found index url https://www.piwheels.org/simple/
2025-06-10T01:48:01,118 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/strucgap/
2025-06-10T01:48:01,778 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/strucgap/
2025-06-10T01:48:02,935 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/strucgap/
2025-06-10T01:48:05,093 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/strucgap/
2025-06-10T01:48:09,254 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/strucgap/
2025-06-10T01:48:09,411 Could not fetch URL https://www.piwheels.org/simple/strucgap/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/strucgap/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping
2025-06-10T01:48:09,413 Skipping link: not a file: https://www.piwheels.org/simple/strucgap/
2025-06-10T01:48:09,413 Skipping link: not a file: https://pypi.org/simple/strucgap/
2025-06-10T01:48:09,432 Given no hashes to check 1 links for project 'strucgap': discarding no candidates
2025-06-10T01:48:09,434 Collecting strucgap==1.0.5
2025-06-10T01:48:09,436   Created temporary directory: /tmp/pip-unpack-bjp9r08w
2025-06-10T01:48:09,750   Downloading strucgap-1.0.5.tar.gz (114 kB)
2025-06-10T01:48:09,921   Added strucgap==1.0.5 from https://files.pythonhosted.org/packages/31/14/c9640736615f7b3cd7300f1146d0f6c3c707a24e604b663635e89fb72f74/strucgap-1.0.5.tar.gz to build tracker '/tmp/pip-build-tracker-a70300g1'
2025-06-10T01:48:09,924   Running setup.py (path:/tmp/pip-wheel-3o7fcxfv/strucgap_82b02b2acd0246d7a7ff0e9b76f64dae/setup.py) egg_info for package strucgap
2025-06-10T01:48:09,925   Created temporary directory: /tmp/pip-pip-egg-info-fmdvn_bz
2025-06-10T01:48:09,926   Preparing metadata (setup.py): started
2025-06-10T01:48:09,927   Running command python setup.py egg_info
2025-06-10T01:48:10,817   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-06-10T01:48:10,818   !!

2025-06-10T01:48:10,819           ********************************************************************************
2025-06-10T01:48:10,819           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-06-10T01:48:10,820           License :: OSI Approved :: MIT License

2025-06-10T01:48:10,821           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-06-10T01:48:10,822           ********************************************************************************

2025-06-10T01:48:10,823   !!
2025-06-10T01:48:10,824     self._finalize_license_expression()
2025-06-10T01:48:10,849   running egg_info
2025-06-10T01:48:10,877   creating /tmp/pip-pip-egg-info-fmdvn_bz/strucgap.egg-info
2025-06-10T01:48:10,878   writing /tmp/pip-pip-egg-info-fmdvn_bz/strucgap.egg-info/PKG-INFO
2025-06-10T01:48:10,882   writing dependency_links to /tmp/pip-pip-egg-info-fmdvn_bz/strucgap.egg-info/dependency_links.txt
2025-06-10T01:48:10,885   writing requirements to /tmp/pip-pip-egg-info-fmdvn_bz/strucgap.egg-info/requires.txt
2025-06-10T01:48:10,886   writing top-level names to /tmp/pip-pip-egg-info-fmdvn_bz/strucgap.egg-info/top_level.txt
2025-06-10T01:48:10,887   writing manifest file '/tmp/pip-pip-egg-info-fmdvn_bz/strucgap.egg-info/SOURCES.txt'
2025-06-10T01:48:10,977   reading manifest file '/tmp/pip-pip-egg-info-fmdvn_bz/strucgap.egg-info/SOURCES.txt'
2025-06-10T01:48:10,982   writing manifest file '/tmp/pip-pip-egg-info-fmdvn_bz/strucgap.egg-info/SOURCES.txt'
2025-06-10T01:48:11,093   Preparing metadata (setup.py): finished with status 'done'
2025-06-10T01:48:11,098   Source in /tmp/pip-wheel-3o7fcxfv/strucgap_82b02b2acd0246d7a7ff0e9b76f64dae has version 1.0.5, which satisfies requirement strucgap==1.0.5 from https://files.pythonhosted.org/packages/31/14/c9640736615f7b3cd7300f1146d0f6c3c707a24e604b663635e89fb72f74/strucgap-1.0.5.tar.gz
2025-06-10T01:48:11,099   Removed strucgap==1.0.5 from https://files.pythonhosted.org/packages/31/14/c9640736615f7b3cd7300f1146d0f6c3c707a24e604b663635e89fb72f74/strucgap-1.0.5.tar.gz from build tracker '/tmp/pip-build-tracker-a70300g1'
2025-06-10T01:48:11,108 Created temporary directory: /tmp/pip-unpack-iqwaht99
2025-06-10T01:48:11,110 Created temporary directory: /tmp/pip-unpack-by9oapqr
2025-06-10T01:48:11,110 Building wheels for collected packages: strucgap
2025-06-10T01:48:11,115   Created temporary directory: /tmp/pip-wheel-m65ae02s
2025-06-10T01:48:11,116   DEPRECATION: Building 'strucgap' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'strucgap'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-06-10T01:48:11,117   Building wheel for strucgap (setup.py): started
2025-06-10T01:48:11,118   Destination directory: /tmp/pip-wheel-m65ae02s
2025-06-10T01:48:11,119   Running command python setup.py bdist_wheel
2025-06-10T01:48:11,971   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-06-10T01:48:11,971   !!

2025-06-10T01:48:11,973           ********************************************************************************
2025-06-10T01:48:11,973           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-06-10T01:48:11,975           License :: OSI Approved :: MIT License

2025-06-10T01:48:11,976           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-06-10T01:48:11,976           ********************************************************************************

2025-06-10T01:48:11,977   !!
2025-06-10T01:48:11,978     self._finalize_license_expression()
2025-06-10T01:48:11,978   running bdist_wheel
2025-06-10T01:48:12,110   running build
2025-06-10T01:48:12,111   running build_py
2025-06-10T01:48:12,142   creating build/lib/strucgap
2025-06-10T01:48:12,145   copying strucgap/glycanstructure.py -> build/lib/strucgap
2025-06-10T01:48:12,149   copying strucgap/functionannotation.py -> build/lib/strucgap
2025-06-10T01:48:12,153   copying strucgap/__init__.py -> build/lib/strucgap
2025-06-10T01:48:12,155   copying strucgap/datavisualization.py -> build/lib/strucgap
2025-06-10T01:48:12,164   copying strucgap/glyconetwork.py -> build/lib/strucgap
2025-06-10T01:48:12,168   copying strucgap/glycopeptidequant.py -> build/lib/strucgap
2025-06-10T01:48:12,173   copying strucgap/preprocess.py -> build/lib/strucgap
2025-06-10T01:48:12,176   copying strucgap/insighttracker.py -> build/lib/strucgap
2025-06-10T01:48:12,179   copying strucgap/glycosite.py -> build/lib/strucgap
2025-06-10T01:48:12,210   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-06-10T01:48:12,211   !!

2025-06-10T01:48:12,212           ********************************************************************************
2025-06-10T01:48:12,213           Please avoid running ``setup.py`` directly.
2025-06-10T01:48:12,213           Instead, use pypa/build, pypa/installer or other
2025-06-10T01:48:12,214           standards-based tools.

2025-06-10T01:48:12,215           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-06-10T01:48:12,216           or your builds will no longer be supported.

2025-06-10T01:48:12,217           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-06-10T01:48:12,218           ********************************************************************************

2025-06-10T01:48:12,219   !!
2025-06-10T01:48:12,220     self.initialize_options()
2025-06-10T01:48:12,239   installing to build/bdist.linux-armv7l/wheel
2025-06-10T01:48:12,240   running install
2025-06-10T01:48:12,264   running install_lib
2025-06-10T01:48:12,293   creating build/bdist.linux-armv7l/wheel
2025-06-10T01:48:12,295   creating build/bdist.linux-armv7l/wheel/strucgap
2025-06-10T01:48:12,297   copying build/lib/strucgap/glycanstructure.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-10T01:48:12,301   copying build/lib/strucgap/functionannotation.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-10T01:48:12,305   copying build/lib/strucgap/__init__.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-10T01:48:12,307   copying build/lib/strucgap/datavisualization.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-10T01:48:12,316   copying build/lib/strucgap/glyconetwork.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-10T01:48:12,319   copying build/lib/strucgap/glycopeptidequant.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-10T01:48:12,326   copying build/lib/strucgap/preprocess.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-10T01:48:12,330   copying build/lib/strucgap/insighttracker.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-10T01:48:12,332   copying build/lib/strucgap/glycosite.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-10T01:48:12,335   running install_egg_info
2025-06-10T01:48:12,371   running egg_info
2025-06-10T01:48:12,402   writing strucgap.egg-info/PKG-INFO
2025-06-10T01:48:12,405   writing dependency_links to strucgap.egg-info/dependency_links.txt
2025-06-10T01:48:12,408   writing requirements to strucgap.egg-info/requires.txt
2025-06-10T01:48:12,409   writing top-level names to strucgap.egg-info/top_level.txt
2025-06-10T01:48:12,440   reading manifest file 'strucgap.egg-info/SOURCES.txt'
2025-06-10T01:48:12,445   writing manifest file 'strucgap.egg-info/SOURCES.txt'
2025-06-10T01:48:12,446   Copying strucgap.egg-info to build/bdist.linux-armv7l/wheel/./strucgap-1.0.5-py3.11.egg-info
2025-06-10T01:48:12,456   running install_scripts
2025-06-10T01:48:12,466   creating build/bdist.linux-armv7l/wheel/strucgap-1.0.5.dist-info/WHEEL
2025-06-10T01:48:12,468   creating '/tmp/pip-wheel-m65ae02s/strucgap-1.0.5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-06-10T01:48:12,471   adding 'strucgap/__init__.py'
2025-06-10T01:48:12,496   adding 'strucgap/datavisualization.py'
2025-06-10T01:48:12,506   adding 'strucgap/functionannotation.py'
2025-06-10T01:48:12,513   adding 'strucgap/glycanstructure.py'
2025-06-10T01:48:12,520   adding 'strucgap/glyconetwork.py'
2025-06-10T01:48:12,528   adding 'strucgap/glycopeptidequant.py'
2025-06-10T01:48:12,531   adding 'strucgap/glycosite.py'
2025-06-10T01:48:12,534   adding 'strucgap/insighttracker.py'
2025-06-10T01:48:12,539   adding 'strucgap/preprocess.py'
2025-06-10T01:48:12,541   adding 'strucgap-1.0.5.dist-info/METADATA'
2025-06-10T01:48:12,542   adding 'strucgap-1.0.5.dist-info/WHEEL'
2025-06-10T01:48:12,543   adding 'strucgap-1.0.5.dist-info/top_level.txt'
2025-06-10T01:48:12,544   adding 'strucgap-1.0.5.dist-info/RECORD'
2025-06-10T01:48:12,547   removing build/bdist.linux-armv7l/wheel
2025-06-10T01:48:12,663   Building wheel for strucgap (setup.py): finished with status 'done'
2025-06-10T01:48:12,667   Created wheel for strucgap: filename=strucgap-1.0.5-py3-none-any.whl size=121228 sha256=a6b0b4114833f28f1f8a1524ad72cad49d119add68426bba57b073c0b9e12b32
2025-06-10T01:48:12,668   Stored in directory: /tmp/pip-ephem-wheel-cache-6ucquhab/wheels/a7/e6/49/a5bf01cc51704f198c47974e5feb4c114f365b5e4f94dfd18f
2025-06-10T01:48:12,679 Successfully built strucgap
2025-06-10T01:48:12,687 Removed build tracker: '/tmp/pip-build-tracker-a70300g1'