2025-06-09T19:06:52,998 Created temporary directory: /tmp/pip-build-tracker-fpv8k7jp 2025-06-09T19:06:52,999 Initialized build tracking at /tmp/pip-build-tracker-fpv8k7jp 2025-06-09T19:06:53,000 Created build tracker: /tmp/pip-build-tracker-fpv8k7jp 2025-06-09T19:06:53,001 Entered build tracker: /tmp/pip-build-tracker-fpv8k7jp 2025-06-09T19:06:53,001 Created temporary directory: /tmp/pip-wheel-bytfyjyf 2025-06-09T19:06:53,006 Created temporary directory: /tmp/pip-ephem-wheel-cache-0d1they7 2025-06-09T19:06:53,055 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-06-09T19:06:53,057 2 location(s) to search for versions of td2: 2025-06-09T19:06:53,057 * https://pypi.org/simple/td2/ 2025-06-09T19:06:53,057 * https://www.piwheels.org/simple/td2/ 2025-06-09T19:06:53,058 Fetching project page and analyzing links: https://pypi.org/simple/td2/ 2025-06-09T19:06:53,059 Getting page https://pypi.org/simple/td2/ 2025-06-09T19:06:53,060 Found index url https://pypi.org/simple/ 2025-06-09T19:06:53,288 Fetched page https://pypi.org/simple/td2/ as application/vnd.pypi.simple.v1+json 2025-06-09T19:06:53,291 Skipping link: No binaries permitted for td2: https://files.pythonhosted.org/packages/43/52/258b0d913bfa795951cd68eb8f202e56bb686e2ac215bd537f5e5d8523a9/TD2-0.1.0-py3-none-any.whl (from https://pypi.org/simple/td2/) (requires-python:>=3.8) 2025-06-09T19:06:53,292 Found link https://files.pythonhosted.org/packages/ad/37/151603746c26b5ef38676339bbf67afdb530888937fbb8e1e775f27208ac/td2-0.1.0.tar.gz (from https://pypi.org/simple/td2/) (requires-python:>=3.8), version: 0.1.0 2025-06-09T19:06:53,293 Skipping link: No binaries permitted for td2: https://files.pythonhosted.org/packages/f6/f9/c52c232ea9f0677a8dcc8372c808f2db059730d017e5081a1c0ce151398c/TD2-1.0.0-py3-none-any.whl (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9) 2025-06-09T19:06:53,294 Found link https://files.pythonhosted.org/packages/42/df/2123f303f9668376b0783d67b0dc1d77ab320fcd7cd6499b54d2bbdf24ee/td2-1.0.0.tar.gz (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9), version: 1.0.0 2025-06-09T19:06:53,295 Skipping link: No binaries permitted for td2: https://files.pythonhosted.org/packages/ff/a4/ab6be14acf5c1f585afc4881d8fc05f1aa2ba8985326d9af761acf9feaa4/td2-1.0.1-py3-none-any.whl (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9) 2025-06-09T19:06:53,296 Found link https://files.pythonhosted.org/packages/27/76/0de889e7ac948b0a6c8de999fac74484afebb986c22a31f1541ed61cf3a9/td2-1.0.1.tar.gz (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9), version: 1.0.1 2025-06-09T19:06:53,296 Skipping link: No binaries permitted for td2: https://files.pythonhosted.org/packages/0b/85/7fa6d4c7d930f86d60ad89ece226cabe83198b2f640b4936c9b826934d8e/TD2-1.0.2-py3-none-any.whl (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9) 2025-06-09T19:06:53,297 Skipping link: No binaries permitted for td2: https://files.pythonhosted.org/packages/59/7f/c557088b575b11b930a810c4b08d7947c231bfbd6083e23691ab6d4f35d7/td2-1.0.2-py3-none-any.whl (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9) 2025-06-09T19:06:53,298 Found link https://files.pythonhosted.org/packages/03/86/7cacd5aebbaf6de14d05cd2c46ab4d8214bd5674713e018237f19510054f/td2-1.0.2.tar.gz (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9), version: 1.0.2 2025-06-09T19:06:53,299 Skipping link: No binaries permitted for td2: https://files.pythonhosted.org/packages/9c/12/08401c017e913b8fd32b212039af4a257aad486f53600624d391560eb554/TD2-1.0.3-py3-none-any.whl (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9) 2025-06-09T19:06:53,299 Found link https://files.pythonhosted.org/packages/f1/d4/7572f90f0da85e70bd129c15ed61ae301c5897b5e65d3156c602cf62fa1a/td2-1.0.3.tar.gz (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9), version: 1.0.3 2025-06-09T19:06:53,300 Skipping link: No binaries permitted for td2: https://files.pythonhosted.org/packages/c3/e0/adcb22d02f8881bdfce4a3c89003203115487946a2015cb5350d7c8884f3/TD2-1.0.5-py3-none-any.whl (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9) 2025-06-09T19:06:53,301 Found link https://files.pythonhosted.org/packages/d6/33/ef87f351e48b90f3fe892c982e721592fdbbf7b40d9bf34faf0a3a13198b/td2-1.0.5.tar.gz (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9), version: 1.0.5 2025-06-09T19:06:53,301 Skipping link: No binaries permitted for td2: https://files.pythonhosted.org/packages/ab/bc/6cb935774ae1b624faff92638a3422f0f12aeaf5f61ff820adbbd36464fc/td2-1.0.6-py3-none-any.whl (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9) 2025-06-09T19:06:53,302 Found link https://files.pythonhosted.org/packages/ef/4f/51dd7d1bd195d6e58d3efca71051ccd24219e3ad7c50098ecd63d9d83970/td2-1.0.6.tar.gz (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9), version: 1.0.6 2025-06-09T19:06:53,303 Fetching project page and analyzing links: https://www.piwheels.org/simple/td2/ 2025-06-09T19:06:53,303 Getting page https://www.piwheels.org/simple/td2/ 2025-06-09T19:06:53,305 Found index url https://www.piwheels.org/simple/ 2025-06-09T19:06:53,467 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/td2/ 2025-06-09T19:06:54,128 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/td2/ 2025-06-09T19:06:55,284 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/td2/ 2025-06-09T19:06:57,442 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/td2/ 2025-06-09T19:07:01,602 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/td2/ 2025-06-09T19:07:01,760 Could not fetch URL https://www.piwheels.org/simple/td2/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/td2/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping 2025-06-09T19:07:01,762 Skipping link: not a file: https://www.piwheels.org/simple/td2/ 2025-06-09T19:07:01,763 Skipping link: not a file: https://pypi.org/simple/td2/ 2025-06-09T19:07:01,782 Given no hashes to check 1 links for project 'td2': discarding no candidates 2025-06-09T19:07:01,784 Collecting td2==1.0.3 2025-06-09T19:07:01,787 Created temporary directory: /tmp/pip-unpack-5m2ga3of 2025-06-09T19:07:02,020 Downloading td2-1.0.3.tar.gz (38 kB) 2025-06-09T19:07:02,160 Added td2==1.0.3 from https://files.pythonhosted.org/packages/f1/d4/7572f90f0da85e70bd129c15ed61ae301c5897b5e65d3156c602cf62fa1a/td2-1.0.3.tar.gz to build tracker '/tmp/pip-build-tracker-fpv8k7jp' 2025-06-09T19:07:02,161 Running setup.py (path:/tmp/pip-wheel-bytfyjyf/td2_1ac143f04e0e43608b2909f21ec21b64/setup.py) egg_info for package td2 2025-06-09T19:07:02,162 Created temporary directory: /tmp/pip-pip-egg-info-zuit9r1w 2025-06-09T19:07:02,163 Preparing metadata (setup.py): started 2025-06-09T19:07:02,164 Running command python setup.py egg_info 2025-06-09T19:07:03,086 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-06-09T19:07:03,087 !! 2025-06-09T19:07:03,088 ******************************************************************************** 2025-06-09T19:07:03,088 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-06-09T19:07:03,089 License :: OSI Approved :: MIT License 2025-06-09T19:07:03,090 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-09T19:07:03,091 ******************************************************************************** 2025-06-09T19:07:03,092 !! 2025-06-09T19:07:03,092 self._finalize_license_expression() 2025-06-09T19:07:03,116 running egg_info 2025-06-09T19:07:03,145 creating /tmp/pip-pip-egg-info-zuit9r1w/TD2.egg-info 2025-06-09T19:07:03,146 writing /tmp/pip-pip-egg-info-zuit9r1w/TD2.egg-info/PKG-INFO 2025-06-09T19:07:03,151 writing dependency_links to /tmp/pip-pip-egg-info-zuit9r1w/TD2.egg-info/dependency_links.txt 2025-06-09T19:07:03,152 writing entry points to /tmp/pip-pip-egg-info-zuit9r1w/TD2.egg-info/entry_points.txt 2025-06-09T19:07:03,155 writing requirements to /tmp/pip-pip-egg-info-zuit9r1w/TD2.egg-info/requires.txt 2025-06-09T19:07:03,156 writing top-level names to /tmp/pip-pip-egg-info-zuit9r1w/TD2.egg-info/top_level.txt 2025-06-09T19:07:03,157 writing manifest file '/tmp/pip-pip-egg-info-zuit9r1w/TD2.egg-info/SOURCES.txt' 2025-06-09T19:07:03,264 reading manifest file '/tmp/pip-pip-egg-info-zuit9r1w/TD2.egg-info/SOURCES.txt' 2025-06-09T19:07:03,265 reading manifest template 'MANIFEST.in' 2025-06-09T19:07:03,266 warning: no files found matching 'tables/table_*.json' 2025-06-09T19:07:03,267 adding license file 'LICENSE.txt' 2025-06-09T19:07:03,271 writing manifest file '/tmp/pip-pip-egg-info-zuit9r1w/TD2.egg-info/SOURCES.txt' 2025-06-09T19:07:03,384 Preparing metadata (setup.py): finished with status 'done' 2025-06-09T19:07:03,388 Source in /tmp/pip-wheel-bytfyjyf/td2_1ac143f04e0e43608b2909f21ec21b64 has version 1.0.3, which satisfies requirement td2==1.0.3 from https://files.pythonhosted.org/packages/f1/d4/7572f90f0da85e70bd129c15ed61ae301c5897b5e65d3156c602cf62fa1a/td2-1.0.3.tar.gz 2025-06-09T19:07:03,389 Removed td2==1.0.3 from https://files.pythonhosted.org/packages/f1/d4/7572f90f0da85e70bd129c15ed61ae301c5897b5e65d3156c602cf62fa1a/td2-1.0.3.tar.gz from build tracker '/tmp/pip-build-tracker-fpv8k7jp' 2025-06-09T19:07:03,399 Created temporary directory: /tmp/pip-unpack-dz33ws4_ 2025-06-09T19:07:03,400 Created temporary directory: /tmp/pip-unpack-11vg2zcd 2025-06-09T19:07:03,400 Building wheels for collected packages: td2 2025-06-09T19:07:03,404 Created temporary directory: /tmp/pip-wheel-3l45bu9j 2025-06-09T19:07:03,405 DEPRECATION: Building 'td2' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'td2'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-06-09T19:07:03,407 Building wheel for td2 (setup.py): started 2025-06-09T19:07:03,408 Destination directory: /tmp/pip-wheel-3l45bu9j 2025-06-09T19:07:03,408 Running command python setup.py bdist_wheel 2025-06-09T19:07:04,262 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-06-09T19:07:04,262 !! 2025-06-09T19:07:04,264 ******************************************************************************** 2025-06-09T19:07:04,265 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-06-09T19:07:04,266 License :: OSI Approved :: MIT License 2025-06-09T19:07:04,267 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-09T19:07:04,268 ******************************************************************************** 2025-06-09T19:07:04,269 !! 2025-06-09T19:07:04,270 self._finalize_license_expression() 2025-06-09T19:07:04,270 running bdist_wheel 2025-06-09T19:07:04,402 running build 2025-06-09T19:07:04,403 running build_py 2025-06-09T19:07:04,435 creating build/lib/tests 2025-06-09T19:07:04,437 copying tests/visualize_mane_composition.py -> build/lib/tests 2025-06-09T19:07:04,439 copying tests/test_translate.py -> build/lib/tests 2025-06-09T19:07:04,441 copying tests/test_find_orfs_real.py -> build/lib/tests 2025-06-09T19:07:04,443 copying tests/visualize_benchmark.py -> build/lib/tests 2025-06-09T19:07:04,445 copying tests/compare_peps.py -> build/lib/tests 2025-06-09T19:07:04,447 copying tests/partition_mane.py -> build/lib/tests 2025-06-09T19:07:04,449 copying tests/test_reverse_complement.py -> build/lib/tests 2025-06-09T19:07:04,451 copying tests/__init__.py -> build/lib/tests 2025-06-09T19:07:04,453 copying tests/test_find_orfs.py -> build/lib/tests 2025-06-09T19:07:04,455 copying tests/longorfs_low_memory.py -> build/lib/tests 2025-06-09T19:07:04,457 copying tests/ambiguous_codon_test.py -> build/lib/tests 2025-06-09T19:07:04,460 copying tests/visualize_chess.py -> build/lib/tests 2025-06-09T19:07:04,462 creating build/lib/api 2025-06-09T19:07:04,463 copying api/__init__.py -> build/lib/api 2025-06-09T19:07:04,465 creating build/lib/TD2 2025-06-09T19:07:04,466 copying TD2/LongOrfs.py -> build/lib/TD2 2025-06-09T19:07:04,469 copying TD2/Predict.py -> build/lib/TD2 2025-06-09T19:07:04,472 copying TD2/get_tables.py -> build/lib/TD2 2025-06-09T19:07:04,475 copying TD2/__init__.py -> build/lib/TD2 2025-06-09T19:07:04,476 copying TD2/help.py -> build/lib/TD2 2025-06-09T19:07:04,478 copying TD2/translator.py -> build/lib/TD2 2025-06-09T19:07:04,481 creating build/lib/tests/data 2025-06-09T19:07:04,482 copying tests/data/__init__.py -> build/lib/tests/data 2025-06-09T19:07:04,484 creating build/lib/TD2/tables 2025-06-09T19:07:04,485 copying TD2/tables/__init__.py -> build/lib/TD2/tables 2025-06-09T19:07:04,486 running egg_info 2025-06-09T19:07:04,515 writing TD2.egg-info/PKG-INFO 2025-06-09T19:07:04,520 writing dependency_links to TD2.egg-info/dependency_links.txt 2025-06-09T19:07:04,522 writing entry points to TD2.egg-info/entry_points.txt 2025-06-09T19:07:04,524 writing requirements to TD2.egg-info/requires.txt 2025-06-09T19:07:04,526 writing top-level names to TD2.egg-info/top_level.txt 2025-06-09T19:07:04,571 reading manifest file 'TD2.egg-info/SOURCES.txt' 2025-06-09T19:07:04,576 reading manifest template 'MANIFEST.in' 2025-06-09T19:07:04,577 warning: no files found matching 'tables/table_*.json' 2025-06-09T19:07:04,577 adding license file 'LICENSE.txt' 2025-06-09T19:07:04,581 writing manifest file 'TD2.egg-info/SOURCES.txt' 2025-06-09T19:07:04,597 copying TD2/tables/table_1.json -> build/lib/TD2/tables 2025-06-09T19:07:04,600 copying TD2/tables/table_2.json -> build/lib/TD2/tables 2025-06-09T19:07:04,602 copying TD2/tables/table_3.json -> build/lib/TD2/tables 2025-06-09T19:07:04,604 copying TD2/tables/table_4.json -> build/lib/TD2/tables 2025-06-09T19:07:04,607 copying TD2/tables/table_5.json -> build/lib/TD2/tables 2025-06-09T19:07:04,609 copying TD2/tables/table_6.json -> build/lib/TD2/tables 2025-06-09T19:07:04,611 copying TD2/tables/table_9.json -> build/lib/TD2/tables 2025-06-09T19:07:04,614 copying TD2/tables/table_10.json -> build/lib/TD2/tables 2025-06-09T19:07:04,616 copying TD2/tables/table_11.json -> build/lib/TD2/tables 2025-06-09T19:07:04,618 copying TD2/tables/table_12.json -> build/lib/TD2/tables 2025-06-09T19:07:04,621 copying TD2/tables/table_13.json -> build/lib/TD2/tables 2025-06-09T19:07:04,623 copying TD2/tables/table_14.json -> build/lib/TD2/tables 2025-06-09T19:07:04,625 copying TD2/tables/table_15.json -> build/lib/TD2/tables 2025-06-09T19:07:04,627 copying TD2/tables/table_16.json -> build/lib/TD2/tables 2025-06-09T19:07:04,630 copying TD2/tables/table_21.json -> build/lib/TD2/tables 2025-06-09T19:07:04,632 copying TD2/tables/table_22.json -> build/lib/TD2/tables 2025-06-09T19:07:04,634 copying TD2/tables/table_23.json -> build/lib/TD2/tables 2025-06-09T19:07:04,636 copying TD2/tables/table_24.json -> build/lib/TD2/tables 2025-06-09T19:07:04,638 copying TD2/tables/table_25.json -> build/lib/TD2/tables 2025-06-09T19:07:04,641 copying TD2/tables/table_26.json -> build/lib/TD2/tables 2025-06-09T19:07:04,643 copying TD2/tables/table_27.json -> build/lib/TD2/tables 2025-06-09T19:07:04,645 copying TD2/tables/table_28.json -> build/lib/TD2/tables 2025-06-09T19:07:04,647 copying TD2/tables/table_29.json -> build/lib/TD2/tables 2025-06-09T19:07:04,649 copying TD2/tables/table_30.json -> build/lib/TD2/tables 2025-06-09T19:07:04,652 copying TD2/tables/table_31.json -> build/lib/TD2/tables 2025-06-09T19:07:04,654 copying TD2/tables/table_33.json -> build/lib/TD2/tables 2025-06-09T19:07:04,698 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-06-09T19:07:04,698 !! 2025-06-09T19:07:04,699 ******************************************************************************** 2025-06-09T19:07:04,700 Please avoid running ``setup.py`` directly. 2025-06-09T19:07:04,700 Instead, use pypa/build, pypa/installer or other 2025-06-09T19:07:04,701 standards-based tools. 2025-06-09T19:07:04,702 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-06-09T19:07:04,703 or your builds will no longer be supported. 2025-06-09T19:07:04,704 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-06-09T19:07:04,705 ******************************************************************************** 2025-06-09T19:07:04,706 !! 2025-06-09T19:07:04,706 self.initialize_options() 2025-06-09T19:07:04,726 installing to build/bdist.linux-armv7l/wheel 2025-06-09T19:07:04,727 running install 2025-06-09T19:07:04,751 running install_lib 2025-06-09T19:07:04,779 creating build/bdist.linux-armv7l/wheel 2025-06-09T19:07:04,781 creating build/bdist.linux-armv7l/wheel/tests 2025-06-09T19:07:04,783 creating build/bdist.linux-armv7l/wheel/tests/data 2025-06-09T19:07:04,784 copying build/lib/tests/data/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/data 2025-06-09T19:07:04,786 copying build/lib/tests/visualize_mane_composition.py -> build/bdist.linux-armv7l/wheel/./tests 2025-06-09T19:07:04,788 copying build/lib/tests/test_translate.py -> build/bdist.linux-armv7l/wheel/./tests 2025-06-09T19:07:04,789 copying build/lib/tests/test_find_orfs_real.py -> build/bdist.linux-armv7l/wheel/./tests 2025-06-09T19:07:04,792 copying build/lib/tests/visualize_benchmark.py -> build/bdist.linux-armv7l/wheel/./tests 2025-06-09T19:07:04,794 copying build/lib/tests/compare_peps.py -> build/bdist.linux-armv7l/wheel/./tests 2025-06-09T19:07:04,796 copying build/lib/tests/partition_mane.py -> build/bdist.linux-armv7l/wheel/./tests 2025-06-09T19:07:04,798 copying build/lib/tests/test_reverse_complement.py -> build/bdist.linux-armv7l/wheel/./tests 2025-06-09T19:07:04,800 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./tests 2025-06-09T19:07:04,802 copying build/lib/tests/test_find_orfs.py -> build/bdist.linux-armv7l/wheel/./tests 2025-06-09T19:07:04,804 copying build/lib/tests/longorfs_low_memory.py -> build/bdist.linux-armv7l/wheel/./tests 2025-06-09T19:07:04,806 copying build/lib/tests/ambiguous_codon_test.py -> build/bdist.linux-armv7l/wheel/./tests 2025-06-09T19:07:04,809 copying build/lib/tests/visualize_chess.py -> build/bdist.linux-armv7l/wheel/./tests 2025-06-09T19:07:04,812 creating build/bdist.linux-armv7l/wheel/api 2025-06-09T19:07:04,813 copying build/lib/api/__init__.py -> build/bdist.linux-armv7l/wheel/./api 2025-06-09T19:07:04,815 creating build/bdist.linux-armv7l/wheel/TD2 2025-06-09T19:07:04,816 copying build/lib/TD2/LongOrfs.py -> build/bdist.linux-armv7l/wheel/./TD2 2025-06-09T19:07:04,819 copying build/lib/TD2/Predict.py -> build/bdist.linux-armv7l/wheel/./TD2 2025-06-09T19:07:04,822 creating build/bdist.linux-armv7l/wheel/TD2/tables 2025-06-09T19:07:04,823 copying build/lib/TD2/tables/table_14.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-09T19:07:04,825 copying build/lib/TD2/tables/table_33.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-09T19:07:04,827 copying build/lib/TD2/tables/table_28.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-09T19:07:04,829 copying build/lib/TD2/tables/table_15.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-09T19:07:04,831 copying build/lib/TD2/tables/table_2.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-09T19:07:04,833 copying build/lib/TD2/tables/table_29.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-09T19:07:04,835 copying build/lib/TD2/tables/table_4.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-09T19:07:04,837 copying build/lib/TD2/tables/table_12.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-09T19:07:04,838 copying build/lib/TD2/tables/table_22.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-09T19:07:04,840 copying build/lib/TD2/tables/table_3.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-09T19:07:04,842 copying build/lib/TD2/tables/table_13.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-09T19:07:04,845 copying build/lib/TD2/tables/table_31.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-09T19:07:04,846 copying build/lib/TD2/tables/table_16.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-09T19:07:04,848 copying build/lib/TD2/tables/table_6.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-09T19:07:04,850 copying build/lib/TD2/tables/table_30.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-09T19:07:04,852 copying build/lib/TD2/tables/table_26.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-09T19:07:04,854 copying build/lib/TD2/tables/table_24.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-09T19:07:04,856 copying build/lib/TD2/tables/table_9.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-09T19:07:04,858 copying build/lib/TD2/tables/table_11.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-09T19:07:04,860 copying build/lib/TD2/tables/table_25.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-09T19:07:04,862 copying build/lib/TD2/tables/table_1.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-09T19:07:04,864 copying build/lib/TD2/tables/table_23.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-09T19:07:04,866 copying build/lib/TD2/tables/table_5.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-09T19:07:04,868 copying build/lib/TD2/tables/__init__.py -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-09T19:07:04,869 copying build/lib/TD2/tables/table_27.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-09T19:07:04,871 copying build/lib/TD2/tables/table_21.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-09T19:07:04,873 copying build/lib/TD2/tables/table_10.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-09T19:07:04,875 copying build/lib/TD2/get_tables.py -> build/bdist.linux-armv7l/wheel/./TD2 2025-06-09T19:07:04,877 copying build/lib/TD2/__init__.py -> build/bdist.linux-armv7l/wheel/./TD2 2025-06-09T19:07:04,879 copying build/lib/TD2/help.py -> build/bdist.linux-armv7l/wheel/./TD2 2025-06-09T19:07:04,880 copying build/lib/TD2/translator.py -> build/bdist.linux-armv7l/wheel/./TD2 2025-06-09T19:07:04,882 running install_egg_info 2025-06-09T19:07:04,919 Copying TD2.egg-info to build/bdist.linux-armv7l/wheel/./TD2-1.0.3-py3.11.egg-info 2025-06-09T19:07:04,930 running install_scripts 2025-06-09T19:07:04,943 creating build/bdist.linux-armv7l/wheel/td2-1.0.3.dist-info/WHEEL 2025-06-09T19:07:04,946 creating '/tmp/pip-wheel-3l45bu9j/td2-1.0.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-06-09T19:07:04,950 adding 'TD2/LongOrfs.py' 2025-06-09T19:07:04,954 adding 'TD2/Predict.py' 2025-06-09T19:07:04,955 adding 'TD2/__init__.py' 2025-06-09T19:07:04,957 adding 'TD2/get_tables.py' 2025-06-09T19:07:04,958 adding 'TD2/help.py' 2025-06-09T19:07:04,960 adding 'TD2/translator.py' 2025-06-09T19:07:04,962 adding 'TD2/tables/__init__.py' 2025-06-09T19:07:04,963 adding 'TD2/tables/table_1.json' 2025-06-09T19:07:04,964 adding 'TD2/tables/table_10.json' 2025-06-09T19:07:04,966 adding 'TD2/tables/table_11.json' 2025-06-09T19:07:04,967 adding 'TD2/tables/table_12.json' 2025-06-09T19:07:04,968 adding 'TD2/tables/table_13.json' 2025-06-09T19:07:04,970 adding 'TD2/tables/table_14.json' 2025-06-09T19:07:04,971 adding 'TD2/tables/table_15.json' 2025-06-09T19:07:04,973 adding 'TD2/tables/table_16.json' 2025-06-09T19:07:04,974 adding 'TD2/tables/table_2.json' 2025-06-09T19:07:04,975 adding 'TD2/tables/table_21.json' 2025-06-09T19:07:04,977 adding 'TD2/tables/table_22.json' 2025-06-09T19:07:04,978 adding 'TD2/tables/table_23.json' 2025-06-09T19:07:04,980 adding 'TD2/tables/table_24.json' 2025-06-09T19:07:04,981 adding 'TD2/tables/table_25.json' 2025-06-09T19:07:04,982 adding 'TD2/tables/table_26.json' 2025-06-09T19:07:04,984 adding 'TD2/tables/table_27.json' 2025-06-09T19:07:04,985 adding 'TD2/tables/table_28.json' 2025-06-09T19:07:04,986 adding 'TD2/tables/table_29.json' 2025-06-09T19:07:04,988 adding 'TD2/tables/table_3.json' 2025-06-09T19:07:04,989 adding 'TD2/tables/table_30.json' 2025-06-09T19:07:04,990 adding 'TD2/tables/table_31.json' 2025-06-09T19:07:04,992 adding 'TD2/tables/table_33.json' 2025-06-09T19:07:04,993 adding 'TD2/tables/table_4.json' 2025-06-09T19:07:04,995 adding 'TD2/tables/table_5.json' 2025-06-09T19:07:04,996 adding 'TD2/tables/table_6.json' 2025-06-09T19:07:04,998 adding 'TD2/tables/table_9.json' 2025-06-09T19:07:05,000 adding 'api/__init__.py' 2025-06-09T19:07:05,002 adding 'td2-1.0.3.dist-info/licenses/LICENSE.txt' 2025-06-09T19:07:05,004 adding 'tests/__init__.py' 2025-06-09T19:07:05,005 adding 'tests/ambiguous_codon_test.py' 2025-06-09T19:07:05,007 adding 'tests/compare_peps.py' 2025-06-09T19:07:05,010 adding 'tests/longorfs_low_memory.py' 2025-06-09T19:07:05,011 adding 'tests/partition_mane.py' 2025-06-09T19:07:05,012 adding 'tests/test_find_orfs.py' 2025-06-09T19:07:05,015 adding 'tests/test_find_orfs_real.py' 2025-06-09T19:07:05,016 adding 'tests/test_reverse_complement.py' 2025-06-09T19:07:05,017 adding 'tests/test_translate.py' 2025-06-09T19:07:05,019 adding 'tests/visualize_benchmark.py' 2025-06-09T19:07:05,020 adding 'tests/visualize_chess.py' 2025-06-09T19:07:05,021 adding 'tests/visualize_mane_composition.py' 2025-06-09T19:07:05,023 adding 'tests/data/__init__.py' 2025-06-09T19:07:05,024 adding 'td2-1.0.3.dist-info/METADATA' 2025-06-09T19:07:05,025 adding 'td2-1.0.3.dist-info/WHEEL' 2025-06-09T19:07:05,026 adding 'td2-1.0.3.dist-info/entry_points.txt' 2025-06-09T19:07:05,027 adding 'td2-1.0.3.dist-info/top_level.txt' 2025-06-09T19:07:05,028 adding 'td2-1.0.3.dist-info/RECORD' 2025-06-09T19:07:05,031 removing build/bdist.linux-armv7l/wheel 2025-06-09T19:07:05,159 Building wheel for td2 (setup.py): finished with status 'done' 2025-06-09T19:07:05,163 Created wheel for td2: filename=td2-1.0.3-py3-none-any.whl size=55076 sha256=7f47b70ec5e865a83e73c173f75fff821f550fe092c77b1898bc9bc12e23872d 2025-06-09T19:07:05,164 Stored in directory: /tmp/pip-ephem-wheel-cache-0d1they7/wheels/6b/a3/08/258a00855b2c529d8374df44979b13bee7d4ee09908127ebf1 2025-06-09T19:07:05,177 Successfully built td2 2025-06-09T19:07:05,182 Removed build tracker: '/tmp/pip-build-tracker-fpv8k7jp'