2025-06-10T08:04:26,847 Created temporary directory: /tmp/pip-build-tracker-hqdbdyrx 2025-06-10T08:04:26,848 Initialized build tracking at /tmp/pip-build-tracker-hqdbdyrx 2025-06-10T08:04:26,849 Created build tracker: /tmp/pip-build-tracker-hqdbdyrx 2025-06-10T08:04:26,849 Entered build tracker: /tmp/pip-build-tracker-hqdbdyrx 2025-06-10T08:04:26,850 Created temporary directory: /tmp/pip-wheel-ykpaipa4 2025-06-10T08:04:26,854 Created temporary directory: /tmp/pip-ephem-wheel-cache-6_fn69gq 2025-06-10T08:04:26,906 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-06-10T08:04:26,909 2 location(s) to search for versions of cap-anndata: 2025-06-10T08:04:26,909 * https://pypi.org/simple/cap-anndata/ 2025-06-10T08:04:26,909 * https://www.piwheels.org/simple/cap-anndata/ 2025-06-10T08:04:26,909 Fetching project page and analyzing links: https://pypi.org/simple/cap-anndata/ 2025-06-10T08:04:26,910 Getting page https://pypi.org/simple/cap-anndata/ 2025-06-10T08:04:26,912 Found index url https://pypi.org/simple/ 2025-06-10T08:04:27,141 Fetched page https://pypi.org/simple/cap-anndata/ as application/vnd.pypi.simple.v1+json 2025-06-10T08:04:27,144 Skipping link: No binaries permitted for cap-anndata: https://files.pythonhosted.org/packages/d0/a7/4c7fa50653774c8e2d8e365fd34fea344e6ed57571b155327824cadabb67/cap_anndata-0.1.0-py3-none-any.whl (from https://pypi.org/simple/cap-anndata/) (requires-python:>=3.9) 2025-06-10T08:04:27,146 Found link https://files.pythonhosted.org/packages/03/3b/d7ab9431bade22d3ac6ffb2f643834d047fc1eacad3c25d5ff80af0fd11f/cap_anndata-0.1.0.tar.gz (from https://pypi.org/simple/cap-anndata/) (requires-python:>=3.9), version: 0.1.0 2025-06-10T08:04:27,146 Skipping link: No binaries permitted for cap-anndata: https://files.pythonhosted.org/packages/4b/d6/1f7efcf0e14caa0118d1d743eea419b3816376a750f860c33854b4c9fc57/cap_anndata-0.1.1-py3-none-any.whl (from https://pypi.org/simple/cap-anndata/) (requires-python:>=3.9) 2025-06-10T08:04:27,147 Found link https://files.pythonhosted.org/packages/95/e7/9f8bef75725856f1f025220d161fae5c4283cd85640003d48c1f60ad1f96/cap_anndata-0.1.1.tar.gz (from https://pypi.org/simple/cap-anndata/) (requires-python:>=3.9), version: 0.1.1 2025-06-10T08:04:27,148 Skipping link: No binaries permitted for cap-anndata: https://files.pythonhosted.org/packages/aa/fb/c7a8fa8d182ade2afb9ab4807d4e1db1501a21db70c2d25d74d2d7e7b4cc/cap_anndata-0.2.0-py3-none-any.whl (from https://pypi.org/simple/cap-anndata/) (requires-python:>=3.9) 2025-06-10T08:04:27,148 Found link https://files.pythonhosted.org/packages/15/6d/b37c1e6e01fe80a74cf8f4cabadcb855873857b64863763928a256665c8c/cap_anndata-0.2.0.tar.gz (from https://pypi.org/simple/cap-anndata/) (requires-python:>=3.9), version: 0.2.0 2025-06-10T08:04:27,149 Skipping link: No binaries permitted for cap-anndata: https://files.pythonhosted.org/packages/5b/01/7af5f43fc8413da4fa6737fd663f37c57f6861689e1be58815f26850d3cb/cap_anndata-0.2.1-py3-none-any.whl (from https://pypi.org/simple/cap-anndata/) (requires-python:>=3.9) 2025-06-10T08:04:27,150 Found link https://files.pythonhosted.org/packages/46/05/8eab679791c89905e81d0bfa2b03a7402e0fab23691e9b7cca8b05ce61c6/cap_anndata-0.2.1.tar.gz (from https://pypi.org/simple/cap-anndata/) (requires-python:>=3.9), version: 0.2.1 2025-06-10T08:04:27,150 Skipping link: No binaries permitted for cap-anndata: https://files.pythonhosted.org/packages/a5/25/9e77534c4a5844c6dfb8c72ad534db5f3e4cec14ccba96de275c7dfde9cc/cap_anndata-0.2.2-py3-none-any.whl (from https://pypi.org/simple/cap-anndata/) (requires-python:>=3.9) 2025-06-10T08:04:27,151 Found link https://files.pythonhosted.org/packages/dc/17/6c04c77f11a5d2e41fb1c876a651afccaeb6a826f19bb79581ab611d8c05/cap_anndata-0.2.2.tar.gz (from https://pypi.org/simple/cap-anndata/) (requires-python:>=3.9), version: 0.2.2 2025-06-10T08:04:27,152 Skipping link: No binaries permitted for cap-anndata: https://files.pythonhosted.org/packages/06/84/d71fa286a544a0fe23aa33850957479abaaf533428e1a578e4a7b659e255/cap_anndata-0.3.0-py3-none-any.whl (from https://pypi.org/simple/cap-anndata/) (requires-python:>=3.9) 2025-06-10T08:04:27,152 Found link https://files.pythonhosted.org/packages/33/a0/a415a21fa56428e2e2e7b3e45eb3178a3ba380e7ccac4e4988b68d252b87/cap_anndata-0.3.0.tar.gz (from https://pypi.org/simple/cap-anndata/) (requires-python:>=3.9), version: 0.3.0 2025-06-10T08:04:27,153 Skipping link: No binaries permitted for cap-anndata: https://files.pythonhosted.org/packages/63/df/b655a3189f28ad6519303d1a0fee9660989b4fe7d713ed2be1d5ff076a4d/cap_anndata-0.3.1-py3-none-any.whl (from https://pypi.org/simple/cap-anndata/) (requires-python:>=3.9) 2025-06-10T08:04:27,154 Found link https://files.pythonhosted.org/packages/a0/70/f6fa928bcd6b453ba8a4d0a4287f3b7f198784236028beb6d6e2c4355eab/cap_anndata-0.3.1.tar.gz (from https://pypi.org/simple/cap-anndata/) (requires-python:>=3.9), version: 0.3.1 2025-06-10T08:04:27,154 Skipping link: No binaries permitted for cap-anndata: https://files.pythonhosted.org/packages/3d/7e/e990439555a65da5a95e4244ca0bd78db65434255e61f925e8716f63d908/cap_anndata-0.4.0-py3-none-any.whl (from https://pypi.org/simple/cap-anndata/) (requires-python:>=3.9) 2025-06-10T08:04:27,155 Found link https://files.pythonhosted.org/packages/97/b9/04a2e5f4df55c262cc9bd6d17322c59ddfa753f3b27399567981a6a012fc/cap_anndata-0.4.0.tar.gz (from https://pypi.org/simple/cap-anndata/) (requires-python:>=3.9), version: 0.4.0 2025-06-10T08:04:27,155 Skipping link: No binaries permitted for cap-anndata: https://files.pythonhosted.org/packages/f0/0d/823f21cafd2445301fe24a6524a4d71f0597047853d759add77d3b05914a/cap_anndata-0.5.0-py3-none-any.whl (from https://pypi.org/simple/cap-anndata/) (requires-python:>=3.9) 2025-06-10T08:04:27,156 Found link https://files.pythonhosted.org/packages/12/b8/78a21f27e2eaa8c28a6855b2b6509ee3765139fede84042147f553e8a190/cap_anndata-0.5.0.tar.gz (from https://pypi.org/simple/cap-anndata/) (requires-python:>=3.9), version: 0.5.0 2025-06-10T08:04:27,157 Fetching project page and analyzing links: https://www.piwheels.org/simple/cap-anndata/ 2025-06-10T08:04:27,157 Getting page https://www.piwheels.org/simple/cap-anndata/ 2025-06-10T08:04:27,159 Found index url https://www.piwheels.org/simple/ 2025-06-10T08:04:27,330 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/cap-anndata/ 2025-06-10T08:04:27,989 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/cap-anndata/ 2025-06-10T08:04:29,150 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/cap-anndata/ 2025-06-10T08:04:31,309 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/cap-anndata/ 2025-06-10T08:04:35,470 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/cap-anndata/ 2025-06-10T08:04:35,632 Could not fetch URL https://www.piwheels.org/simple/cap-anndata/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/cap-anndata/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping 2025-06-10T08:04:35,634 Skipping link: not a file: https://www.piwheels.org/simple/cap-anndata/ 2025-06-10T08:04:35,635 Skipping link: not a file: https://pypi.org/simple/cap-anndata/ 2025-06-10T08:04:35,654 Given no hashes to check 1 links for project 'cap-anndata': discarding no candidates 2025-06-10T08:04:35,655 Collecting cap-anndata==0.5.0 2025-06-10T08:04:35,658 Created temporary directory: /tmp/pip-unpack-gpvc1b8o 2025-06-10T08:04:35,885 Downloading cap_anndata-0.5.0.tar.gz (16 kB) 2025-06-10T08:04:35,931 Added cap-anndata==0.5.0 from https://files.pythonhosted.org/packages/12/b8/78a21f27e2eaa8c28a6855b2b6509ee3765139fede84042147f553e8a190/cap_anndata-0.5.0.tar.gz to build tracker '/tmp/pip-build-tracker-hqdbdyrx' 2025-06-10T08:04:35,933 Running setup.py (path:/tmp/pip-wheel-ykpaipa4/cap-anndata_cbb65f8ec95f4e3e91a2abdcf78433da/setup.py) egg_info for package cap-anndata 2025-06-10T08:04:35,934 Created temporary directory: /tmp/pip-pip-egg-info-zgifkbud 2025-06-10T08:04:35,935 Preparing metadata (setup.py): started 2025-06-10T08:04:35,936 Running command python setup.py egg_info 2025-06-10T08:04:36,822 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-06-10T08:04:36,823 !! 2025-06-10T08:04:36,824 ******************************************************************************** 2025-06-10T08:04:36,824 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-06-10T08:04:36,825 License :: OSI Approved :: BSD License 2025-06-10T08:04:36,826 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-10T08:04:36,827 ******************************************************************************** 2025-06-10T08:04:36,828 !! 2025-06-10T08:04:36,829 self._finalize_license_expression() 2025-06-10T08:04:36,851 running egg_info 2025-06-10T08:04:36,881 creating /tmp/pip-pip-egg-info-zgifkbud/cap_anndata.egg-info 2025-06-10T08:04:36,882 writing /tmp/pip-pip-egg-info-zgifkbud/cap_anndata.egg-info/PKG-INFO 2025-06-10T08:04:36,886 writing dependency_links to /tmp/pip-pip-egg-info-zgifkbud/cap_anndata.egg-info/dependency_links.txt 2025-06-10T08:04:36,889 writing requirements to /tmp/pip-pip-egg-info-zgifkbud/cap_anndata.egg-info/requires.txt 2025-06-10T08:04:36,890 writing top-level names to /tmp/pip-pip-egg-info-zgifkbud/cap_anndata.egg-info/top_level.txt 2025-06-10T08:04:36,891 writing manifest file '/tmp/pip-pip-egg-info-zgifkbud/cap_anndata.egg-info/SOURCES.txt' 2025-06-10T08:04:36,980 reading manifest file '/tmp/pip-pip-egg-info-zgifkbud/cap_anndata.egg-info/SOURCES.txt' 2025-06-10T08:04:36,982 adding license file 'LICENSE' 2025-06-10T08:04:36,984 writing manifest file '/tmp/pip-pip-egg-info-zgifkbud/cap_anndata.egg-info/SOURCES.txt' 2025-06-10T08:04:37,096 Preparing metadata (setup.py): finished with status 'done' 2025-06-10T08:04:37,100 Source in /tmp/pip-wheel-ykpaipa4/cap-anndata_cbb65f8ec95f4e3e91a2abdcf78433da has version 0.5.0, which satisfies requirement cap-anndata==0.5.0 from https://files.pythonhosted.org/packages/12/b8/78a21f27e2eaa8c28a6855b2b6509ee3765139fede84042147f553e8a190/cap_anndata-0.5.0.tar.gz 2025-06-10T08:04:37,101 Removed cap-anndata==0.5.0 from https://files.pythonhosted.org/packages/12/b8/78a21f27e2eaa8c28a6855b2b6509ee3765139fede84042147f553e8a190/cap_anndata-0.5.0.tar.gz from build tracker '/tmp/pip-build-tracker-hqdbdyrx' 2025-06-10T08:04:37,108 Created temporary directory: /tmp/pip-unpack-chu27vnr 2025-06-10T08:04:37,110 Created temporary directory: /tmp/pip-unpack-j5iqxbsf 2025-06-10T08:04:37,110 Building wheels for collected packages: cap-anndata 2025-06-10T08:04:37,114 Created temporary directory: /tmp/pip-wheel-0p6rot64 2025-06-10T08:04:37,115 DEPRECATION: Building 'cap-anndata' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'cap-anndata'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-06-10T08:04:37,117 Building wheel for cap-anndata (setup.py): started 2025-06-10T08:04:37,118 Destination directory: /tmp/pip-wheel-0p6rot64 2025-06-10T08:04:37,119 Running command python setup.py bdist_wheel 2025-06-10T08:04:37,955 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-06-10T08:04:37,956 !! 2025-06-10T08:04:37,957 ******************************************************************************** 2025-06-10T08:04:37,957 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-06-10T08:04:37,958 License :: OSI Approved :: BSD License 2025-06-10T08:04:37,959 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-10T08:04:37,960 ******************************************************************************** 2025-06-10T08:04:37,961 !! 2025-06-10T08:04:37,962 self._finalize_license_expression() 2025-06-10T08:04:37,962 running bdist_wheel 2025-06-10T08:04:38,096 running build 2025-06-10T08:04:38,097 running build_py 2025-06-10T08:04:38,128 creating build/lib/cap_anndata 2025-06-10T08:04:38,131 copying cap_anndata/reader.py -> build/lib/cap_anndata 2025-06-10T08:04:38,133 copying cap_anndata/backed_df.py -> build/lib/cap_anndata 2025-06-10T08:04:38,135 copying cap_anndata/__init__.py -> build/lib/cap_anndata 2025-06-10T08:04:38,137 copying cap_anndata/backed_dict.py -> build/lib/cap_anndata 2025-06-10T08:04:38,140 copying cap_anndata/cap_anndata.py -> build/lib/cap_anndata 2025-06-10T08:04:38,172 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-06-10T08:04:38,173 !! 2025-06-10T08:04:38,174 ******************************************************************************** 2025-06-10T08:04:38,175 Please avoid running ``setup.py`` directly. 2025-06-10T08:04:38,175 Instead, use pypa/build, pypa/installer or other 2025-06-10T08:04:38,176 standards-based tools. 2025-06-10T08:04:38,177 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-06-10T08:04:38,177 or your builds will no longer be supported. 2025-06-10T08:04:38,179 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-06-10T08:04:38,179 ******************************************************************************** 2025-06-10T08:04:38,180 !! 2025-06-10T08:04:38,181 self.initialize_options() 2025-06-10T08:04:38,200 installing to build/bdist.linux-armv7l/wheel 2025-06-10T08:04:38,201 running install 2025-06-10T08:04:38,225 running install_lib 2025-06-10T08:04:38,252 creating build/bdist.linux-armv7l/wheel 2025-06-10T08:04:38,255 creating build/bdist.linux-armv7l/wheel/cap_anndata 2025-06-10T08:04:38,256 copying build/lib/cap_anndata/reader.py -> build/bdist.linux-armv7l/wheel/./cap_anndata 2025-06-10T08:04:38,258 copying build/lib/cap_anndata/backed_df.py -> build/bdist.linux-armv7l/wheel/./cap_anndata 2025-06-10T08:04:38,260 copying build/lib/cap_anndata/__init__.py -> build/bdist.linux-armv7l/wheel/./cap_anndata 2025-06-10T08:04:38,262 copying build/lib/cap_anndata/backed_dict.py -> build/bdist.linux-armv7l/wheel/./cap_anndata 2025-06-10T08:04:38,264 copying build/lib/cap_anndata/cap_anndata.py -> build/bdist.linux-armv7l/wheel/./cap_anndata 2025-06-10T08:04:38,266 running install_egg_info 2025-06-10T08:04:38,301 running egg_info 2025-06-10T08:04:38,328 writing cap_anndata.egg-info/PKG-INFO 2025-06-10T08:04:38,333 writing dependency_links to cap_anndata.egg-info/dependency_links.txt 2025-06-10T08:04:38,335 writing requirements to cap_anndata.egg-info/requires.txt 2025-06-10T08:04:38,337 writing top-level names to cap_anndata.egg-info/top_level.txt 2025-06-10T08:04:38,367 reading manifest file 'cap_anndata.egg-info/SOURCES.txt' 2025-06-10T08:04:38,370 adding license file 'LICENSE' 2025-06-10T08:04:38,373 writing manifest file 'cap_anndata.egg-info/SOURCES.txt' 2025-06-10T08:04:38,374 Copying cap_anndata.egg-info to build/bdist.linux-armv7l/wheel/./cap_anndata-0.5.0-py3.11.egg-info 2025-06-10T08:04:38,384 running install_scripts 2025-06-10T08:04:38,395 creating build/bdist.linux-armv7l/wheel/cap_anndata-0.5.0.dist-info/WHEEL 2025-06-10T08:04:38,397 creating '/tmp/pip-wheel-0p6rot64/cap_anndata-0.5.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-06-10T08:04:38,400 adding 'cap_anndata/__init__.py' 2025-06-10T08:04:38,401 adding 'cap_anndata/backed_df.py' 2025-06-10T08:04:38,402 adding 'cap_anndata/backed_dict.py' 2025-06-10T08:04:38,405 adding 'cap_anndata/cap_anndata.py' 2025-06-10T08:04:38,407 adding 'cap_anndata/reader.py' 2025-06-10T08:04:38,409 adding 'cap_anndata-0.5.0.dist-info/licenses/LICENSE' 2025-06-10T08:04:38,411 adding 'cap_anndata-0.5.0.dist-info/METADATA' 2025-06-10T08:04:38,412 adding 'cap_anndata-0.5.0.dist-info/WHEEL' 2025-06-10T08:04:38,413 adding 'cap_anndata-0.5.0.dist-info/top_level.txt' 2025-06-10T08:04:38,414 adding 'cap_anndata-0.5.0.dist-info/RECORD' 2025-06-10T08:04:38,415 removing build/bdist.linux-armv7l/wheel 2025-06-10T08:04:38,533 Building wheel for cap-anndata (setup.py): finished with status 'done' 2025-06-10T08:04:38,536 Created wheel for cap-anndata: filename=cap_anndata-0.5.0-py3-none-any.whl size=10551 sha256=eb230e786bdd129186d92c94a90415e9b39e6a2e26f111a74a1e57c9117f1e63 2025-06-10T08:04:38,537 Stored in directory: /tmp/pip-ephem-wheel-cache-6_fn69gq/wheels/0e/3a/37/6d3be26dcc5e2fc16efc4c82dc2271a3e71b3623220f438e12 2025-06-10T08:04:38,548 Successfully built cap-anndata 2025-06-10T08:04:38,552 Removed build tracker: '/tmp/pip-build-tracker-hqdbdyrx'