2025-06-10T16:03:07,216 Created temporary directory: /tmp/pip-build-tracker-62v1l6pp 2025-06-10T16:03:07,217 Initialized build tracking at /tmp/pip-build-tracker-62v1l6pp 2025-06-10T16:03:07,218 Created build tracker: /tmp/pip-build-tracker-62v1l6pp 2025-06-10T16:03:07,218 Entered build tracker: /tmp/pip-build-tracker-62v1l6pp 2025-06-10T16:03:07,219 Created temporary directory: /tmp/pip-wheel-pezrju3s 2025-06-10T16:03:07,223 Created temporary directory: /tmp/pip-ephem-wheel-cache-k4401v4v 2025-06-10T16:03:07,276 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-06-10T16:03:07,278 2 location(s) to search for versions of dendropy: 2025-06-10T16:03:07,278 * https://pypi.org/simple/dendropy/ 2025-06-10T16:03:07,278 * https://www.piwheels.org/simple/dendropy/ 2025-06-10T16:03:07,279 Fetching project page and analyzing links: https://pypi.org/simple/dendropy/ 2025-06-10T16:03:07,280 Getting page https://pypi.org/simple/dendropy/ 2025-06-10T16:03:07,282 Found index url https://pypi.org/simple/ 2025-06-10T16:03:07,509 Fetched page https://pypi.org/simple/dendropy/ as application/vnd.pypi.simple.v1+json 2025-06-10T16:03:07,514 Found link https://files.pythonhosted.org/packages/03/48/8379b3e170d60052da7ccf3387549af17d46808a39062fbb234df3038fa0/DendroPy-3.7.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.7.0 2025-06-10T16:03:07,515 Found link https://files.pythonhosted.org/packages/17/0a/914df0e24dc378acdd9cb1705c1fcfcf15dd1da8992de567a4cce85bc31e/DendroPy-3.7.1.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.7.1 2025-06-10T16:03:07,515 Found link https://files.pythonhosted.org/packages/a2/f5/5c4fb1cde35799eeacb35ac289c271371a0c0fd3197548fab7e184900cc7/DendroPy-3.8.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.8.0 2025-06-10T16:03:07,516 Found link https://files.pythonhosted.org/packages/95/73/7b1084d03e025b27c79342d6935810969edb86677ef3e5eb1f9e5aec1e6f/DendroPy-3.8.1.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.8.1 2025-06-10T16:03:07,517 Found link https://files.pythonhosted.org/packages/18/2e/141c0d6a99905b9be3256aae6a87504f14853b20e40a6d89c7c4c465769d/DendroPy-3.9.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.9.0 2025-06-10T16:03:07,518 Found link https://files.pythonhosted.org/packages/7e/08/a968b51274c8476084521f97af4e8fadd09a6b42a727141f502cc33767c5/DendroPy-3.10.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.10.0 2025-06-10T16:03:07,519 Found link https://files.pythonhosted.org/packages/3a/26/552efe612d37cff025f1dd1350eb643edd6dda1cb628d7cbe572e343a049/DendroPy-3.10.1.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.10.1 2025-06-10T16:03:07,519 Found link https://files.pythonhosted.org/packages/0f/3e/5549b668d04241c77c8f5b26f0c94a87ad93b6b9089fc6bcd510eba5d5f4/DendroPy-3.11.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.11.0 2025-06-10T16:03:07,520 Found link https://files.pythonhosted.org/packages/43/22/69b7713b094697f8a432abe96c44a155519ef67b3c31221de32f4c3d5fa5/DendroPy-3.12.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.12.0 2025-06-10T16:03:07,521 Found link https://files.pythonhosted.org/packages/5f/ae/14c92b087632944149cca61ec8daf41eee0083d0fad30c9248edb7e227d2/DendroPy-3.12.2.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.12.2 2025-06-10T16:03:07,522 Found link https://files.pythonhosted.org/packages/3d/c0/e0a20d1cf4b268757842a03f36452095fccb8eae5ebd541548e29c6ca1e3/DendroPy-3.12.3.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.12.3 2025-06-10T16:03:07,523 Found link https://files.pythonhosted.org/packages/f0/d3/e0180bf1a8d599b8f847ab7a1b19fe4d7a95b3613c57b57108e2a48bb59f/DendroPy-4.0.0.rc1.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.0.0.rc1 2025-06-10T16:03:07,523 Found link https://files.pythonhosted.org/packages/55/dd/0d59b7bde4b230fadb999bc84cc45668a53733cb63e4aacf7e6ab4a9e175/DendroPy-4.0.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.0.0 2025-06-10T16:03:07,524 Found link https://files.pythonhosted.org/packages/52/ba/02652626ed0d56afadc990e6540d998217831d856170ff0c68c3afbef866/DendroPy-4.0.1.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.0.1 2025-06-10T16:03:07,525 Found link https://files.pythonhosted.org/packages/62/10/117c87b76f5f84d4559bd7ad25af04f11369ef8267f3c8e7d62769efc85d/DendroPy-4.0.2.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.0.2 2025-06-10T16:03:07,526 Found link https://files.pythonhosted.org/packages/66/0b/72ca62a6e87ddb9b70cac2cf1fc199ca00127fc168c52bcbcbf30cfb5947/DendroPy-4.0.3.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.0.3 2025-06-10T16:03:07,526 Found link https://files.pythonhosted.org/packages/65/3a/19556a58c560de488dffbf3c7fe7c9ed34c1a6223f0dfe971224a42aaf39/DendroPy-4.1.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.1.0 2025-06-10T16:03:07,527 Found link https://files.pythonhosted.org/packages/e6/5a/d48c8d3f8100efd5eb6e6142f28bf1c13200e08882e59596369035ebc138/DendroPy-4.2.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.2.0 2025-06-10T16:03:07,528 Found link https://files.pythonhosted.org/packages/58/14/d4559893d72675b322c1d60229ef3490bc5c2f5b28c5cc339956aaf8f507/DendroPy-4.3.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.3.0 2025-06-10T16:03:07,528 Found link https://files.pythonhosted.org/packages/f5/21/17e4fbb1c2a68421eec43930b1e118660c7483229f1b28ba4402e8856884/DendroPy-4.4.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.4.0 2025-06-10T16:03:07,529 Found link https://files.pythonhosted.org/packages/e0/f3/222e939e250e71234031d182e58704fff1c3296140f91f70d7ef8b3e17a6/DendroPy-4.5.1.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.5.1 2025-06-10T16:03:07,530 Found link https://files.pythonhosted.org/packages/f9/10/125c181b1d97ffc4661a60ec897cfe058dc46cb53900d807819464c3510f/DendroPy-4.5.2.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.5.2 2025-06-10T16:03:07,530 Skipping link: No binaries permitted for dendropy: https://files.pythonhosted.org/packages/b0/c0/841e46da39a4dae07a5cd4e7a1c9472acbdd623f820b125b5995dd342c9a/DendroPy-4.6.0-py3-none-any.whl (from https://pypi.org/simple/dendropy/) 2025-06-10T16:03:07,531 Found link https://files.pythonhosted.org/packages/8a/88/864aa93d31dd210e5b9bd79cfb3c9ddaf0bfab9b70dd212fb8247ab72f46/DendroPy-4.6.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.6.0 2025-06-10T16:03:07,532 Skipping link: No binaries permitted for dendropy: https://files.pythonhosted.org/packages/7c/3b/f880fd07cb79a46ca838e46ba021fcdaa464bb21e2a9264a7afe77046a88/DendroPy-4.6.1-py3-none-any.whl (from https://pypi.org/simple/dendropy/) 2025-06-10T16:03:07,532 Found link https://files.pythonhosted.org/packages/35/fc/0ff301d0f2484b61f2cc46cfd7649c530cad6313c7f7a695f8cabff8a061/DendroPy-4.6.1.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.6.1 2025-06-10T16:03:07,533 Skipping link: No binaries permitted for dendropy: https://files.pythonhosted.org/packages/a9/70/c715b8467b7cd08a847ad303ce8a2d236e001a526f37179fe77e503602cb/DendroPy-4.6.3-py3-none-any.whl (from https://pypi.org/simple/dendropy/) 2025-06-10T16:03:07,534 Found link https://files.pythonhosted.org/packages/52/f2/c8524894d8bbd5cfb4eca7c350e4407137bd11a752a152c62617ce6f6b76/DendroPy-4.6.3.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.6.3 2025-06-10T16:03:07,534 Skipping link: No binaries permitted for dendropy: https://files.pythonhosted.org/packages/f1/f5/fb4483829a7a9b08c974281d2519d110b69284a43dec7ae320e9971fe4f5/DendroPy-4.6.4-py3-none-any.whl (from https://pypi.org/simple/dendropy/) 2025-06-10T16:03:07,535 Found link https://files.pythonhosted.org/packages/29/7a/0e09e052a746c9e97e45d6e0803e705e13426aa01a13ab845f6108ea4fd5/DendroPy-4.6.4.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.6.4 2025-06-10T16:03:07,536 Skipping link: No binaries permitted for dendropy: https://files.pythonhosted.org/packages/54/2a/e95f42bcc16806f5f5ed49ed8b613830c3831e8a1ecea845756b882672e1/DendroPy-5.0.0-py3-none-any.whl (from https://pypi.org/simple/dendropy/) (requires-python:>=3.6) 2025-06-10T16:03:07,537 Found link https://files.pythonhosted.org/packages/96/33/c3a06df7aec829e8b79b91503708d750d9c4842cfc4377ae215c1e61d97d/DendroPy-5.0.0.tar.gz (from https://pypi.org/simple/dendropy/) (requires-python:>=3.6), version: 5.0.0 2025-06-10T16:03:07,538 Skipping link: No binaries permitted for dendropy: https://files.pythonhosted.org/packages/16/96/7dcfffa89fc659669e697bcbdf01e7eac37ab0676aa242323a23366132a2/DendroPy-5.0.1-py3-none-any.whl (from https://pypi.org/simple/dendropy/) (requires-python:>=3.6) 2025-06-10T16:03:07,538 Found link https://files.pythonhosted.org/packages/42/4b/6b300d145575ac7445e3b79b5c0c3a4ea441937278528b8dbd5b0aab42fc/DendroPy-5.0.1.tar.gz (from https://pypi.org/simple/dendropy/) (requires-python:>=3.6), version: 5.0.1 2025-06-10T16:03:07,539 Skipping link: No binaries permitted for dendropy: https://files.pythonhosted.org/packages/f9/20/95c487820aac183b540c1d9d26d5778c9975015c3505137c5c5cd230a7ee/DendroPy-5.0.7-py3-none-any.whl (from https://pypi.org/simple/dendropy/) (requires-python:>=3.7) 2025-06-10T16:03:07,540 Found link https://files.pythonhosted.org/packages/63/35/150e49455d787ce95487b2f9fa1d9766054ac5df304eae3fc2d24eabf1f4/DendroPy-5.0.7.tar.gz (from https://pypi.org/simple/dendropy/) (requires-python:>=3.7), version: 5.0.7 2025-06-10T16:03:07,541 Skipping link: No binaries permitted for dendropy: https://files.pythonhosted.org/packages/29/3d/d93dfd44e8615b39fab0b939bc7d8030021c092bffb3cc3c50580e75fc8f/DendroPy-5.0.8-py3-none-any.whl (from https://pypi.org/simple/dendropy/) (requires-python:>=3.7) 2025-06-10T16:03:07,541 Found link https://files.pythonhosted.org/packages/76/e4/ea83865a284c81e58d55936578dbfaa012afd7a791a75e1105c46e928f1d/DendroPy-5.0.8.tar.gz (from https://pypi.org/simple/dendropy/) (requires-python:>=3.7), version: 5.0.8 2025-06-10T16:03:07,542 Fetching project page and analyzing links: https://www.piwheels.org/simple/dendropy/ 2025-06-10T16:03:07,543 Getting page https://www.piwheels.org/simple/dendropy/ 2025-06-10T16:03:07,544 Found index url https://www.piwheels.org/simple/ 2025-06-10T16:03:07,706 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/dendropy/ 2025-06-10T16:03:08,364 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/dendropy/ 2025-06-10T16:03:09,520 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/dendropy/ 2025-06-10T16:03:11,686 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/dendropy/ 2025-06-10T16:03:15,843 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/dendropy/ 2025-06-10T16:03:16,002 Could not fetch URL https://www.piwheels.org/simple/dendropy/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/dendropy/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping 2025-06-10T16:03:16,003 Skipping link: not a file: https://www.piwheels.org/simple/dendropy/ 2025-06-10T16:03:16,004 Skipping link: not a file: https://pypi.org/simple/dendropy/ 2025-06-10T16:03:16,025 Given no hashes to check 1 links for project 'dendropy': discarding no candidates 2025-06-10T16:03:16,027 Collecting dendropy==5.0.7 2025-06-10T16:03:16,029 Created temporary directory: /tmp/pip-unpack-wwee9bvl 2025-06-10T16:03:16,262 Downloading DendroPy-5.0.7.tar.gz (398 kB) 2025-06-10T16:03:16,703 Added dendropy==5.0.7 from https://files.pythonhosted.org/packages/63/35/150e49455d787ce95487b2f9fa1d9766054ac5df304eae3fc2d24eabf1f4/DendroPy-5.0.7.tar.gz to build tracker '/tmp/pip-build-tracker-62v1l6pp' 2025-06-10T16:03:16,705 Running setup.py (path:/tmp/pip-wheel-pezrju3s/dendropy_7e34d9c35c1e4431940f4a37644fe90e/setup.py) egg_info for package dendropy 2025-06-10T16:03:16,706 Created temporary directory: /tmp/pip-pip-egg-info-zkw0i5k1 2025-06-10T16:03:16,707 Preparing metadata (setup.py): started 2025-06-10T16:03:16,708 Running command python setup.py egg_info 2025-06-10T16:03:17,290 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-06-10T16:03:17,290 !! 2025-06-10T16:03:17,291 ******************************************************************************** 2025-06-10T16:03:17,292 Requirements should be satisfied by a PEP 517 installer. 2025-06-10T16:03:17,293 If you are using pip, you can try `pip install --use-pep517`. 2025-06-10T16:03:17,294 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-06-10T16:03:17,294 or your builds will no longer be supported. 2025-06-10T16:03:17,295 ******************************************************************************** 2025-06-10T16:03:17,296 !! 2025-06-10T16:03:17,297 dist.fetch_build_eggs(dist.setup_requires) 2025-06-10T16:03:19,999 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-06-10T16:03:20,000 warnings.warn(msg) 2025-06-10T16:03:20,000 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-06-10T16:03:20,001 warnings.warn(msg) 2025-06-10T16:03:20,061 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-06-10T16:03:20,062 !! 2025-06-10T16:03:20,063 ******************************************************************************** 2025-06-10T16:03:20,064 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-06-10T16:03:20,065 License :: OSI Approved :: BSD License 2025-06-10T16:03:20,066 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-10T16:03:20,067 ******************************************************************************** 2025-06-10T16:03:20,068 !! 2025-06-10T16:03:20,069 self._finalize_license_expression() 2025-06-10T16:03:20,093 running egg_info 2025-06-10T16:03:20,123 creating /tmp/pip-pip-egg-info-zkw0i5k1/DendroPy.egg-info 2025-06-10T16:03:20,124 writing /tmp/pip-pip-egg-info-zkw0i5k1/DendroPy.egg-info/PKG-INFO 2025-06-10T16:03:20,128 writing dependency_links to /tmp/pip-pip-egg-info-zkw0i5k1/DendroPy.egg-info/dependency_links.txt 2025-06-10T16:03:20,130 writing entry points to /tmp/pip-pip-egg-info-zkw0i5k1/DendroPy.egg-info/entry_points.txt 2025-06-10T16:03:20,132 writing requirements to /tmp/pip-pip-egg-info-zkw0i5k1/DendroPy.egg-info/requires.txt 2025-06-10T16:03:20,133 writing top-level names to /tmp/pip-pip-egg-info-zkw0i5k1/DendroPy.egg-info/top_level.txt 2025-06-10T16:03:20,134 writing manifest file '/tmp/pip-pip-egg-info-zkw0i5k1/DendroPy.egg-info/SOURCES.txt' 2025-06-10T16:03:20,270 reading manifest file '/tmp/pip-pip-egg-info-zkw0i5k1/DendroPy.egg-info/SOURCES.txt' 2025-06-10T16:03:20,272 reading manifest template 'MANIFEST.in' 2025-06-10T16:03:20,273 warning: no files found matching 'README.rst' 2025-06-10T16:03:20,274 warning: no files found matching 'doc/Makefile' 2025-06-10T16:03:20,274 warning: no files found matching '*' under directory 'doc/source' 2025-06-10T16:03:20,275 warning: no files found matching '*' under directory 'tests/data' 2025-06-10T16:03:20,275 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2025-06-10T16:03:20,276 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2025-06-10T16:03:20,277 warning: no previously-included files matching '.gitignore' found anywhere in distribution 2025-06-10T16:03:20,278 warning: no previously-included files matching '.gitattributes' found anywhere in distribution 2025-06-10T16:03:20,279 warning: no previously-included files matching '.idea' found anywhere in distribution 2025-06-10T16:03:20,279 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2025-06-10T16:03:20,280 adding license file 'LICENSE.rst' 2025-06-10T16:03:20,281 adding license file 'NOTICES.rst' 2025-06-10T16:03:20,281 adding license file 'AUTHORS.rst' 2025-06-10T16:03:20,299 writing manifest file '/tmp/pip-pip-egg-info-zkw0i5k1/DendroPy.egg-info/SOURCES.txt' 2025-06-10T16:03:20,415 Preparing metadata (setup.py): finished with status 'done' 2025-06-10T16:03:20,419 Source in /tmp/pip-wheel-pezrju3s/dendropy_7e34d9c35c1e4431940f4a37644fe90e has version 5.0.7, which satisfies requirement dendropy==5.0.7 from https://files.pythonhosted.org/packages/63/35/150e49455d787ce95487b2f9fa1d9766054ac5df304eae3fc2d24eabf1f4/DendroPy-5.0.7.tar.gz 2025-06-10T16:03:20,420 Removed dendropy==5.0.7 from https://files.pythonhosted.org/packages/63/35/150e49455d787ce95487b2f9fa1d9766054ac5df304eae3fc2d24eabf1f4/DendroPy-5.0.7.tar.gz from build tracker '/tmp/pip-build-tracker-62v1l6pp' 2025-06-10T16:03:20,427 Created temporary directory: /tmp/pip-unpack-g1ycqzcj 2025-06-10T16:03:20,428 Created temporary directory: /tmp/pip-unpack-gfn_1u9d 2025-06-10T16:03:20,429 Building wheels for collected packages: dendropy 2025-06-10T16:03:20,434 Created temporary directory: /tmp/pip-wheel-geaa3lbe 2025-06-10T16:03:20,435 DEPRECATION: Building 'dendropy' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'dendropy'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-06-10T16:03:20,436 Building wheel for dendropy (setup.py): started 2025-06-10T16:03:20,437 Destination directory: /tmp/pip-wheel-geaa3lbe 2025-06-10T16:03:20,438 Running command python setup.py bdist_wheel 2025-06-10T16:03:20,996 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-06-10T16:03:20,996 !! 2025-06-10T16:03:20,997 ******************************************************************************** 2025-06-10T16:03:20,998 Requirements should be satisfied by a PEP 517 installer. 2025-06-10T16:03:20,998 If you are using pip, you can try `pip install --use-pep517`. 2025-06-10T16:03:21,000 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-06-10T16:03:21,000 or your builds will no longer be supported. 2025-06-10T16:03:21,001 ******************************************************************************** 2025-06-10T16:03:21,003 !! 2025-06-10T16:03:21,003 dist.fetch_build_eggs(dist.setup_requires) 2025-06-10T16:03:21,219 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-06-10T16:03:21,220 warnings.warn(msg) 2025-06-10T16:03:21,221 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-06-10T16:03:21,221 warnings.warn(msg) 2025-06-10T16:03:21,503 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-06-10T16:03:21,503 !! 2025-06-10T16:03:21,504 ******************************************************************************** 2025-06-10T16:03:21,505 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-06-10T16:03:21,506 License :: OSI Approved :: BSD License 2025-06-10T16:03:21,507 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-10T16:03:21,507 ******************************************************************************** 2025-06-10T16:03:21,509 !! 2025-06-10T16:03:21,509 self._finalize_license_expression() 2025-06-10T16:03:21,510 running bdist_wheel 2025-06-10T16:03:21,652 running build 2025-06-10T16:03:21,653 running build_py 2025-06-10T16:03:21,687 creating build/lib/dendropy 2025-06-10T16:03:21,690 copying src/dendropy/__main__.py -> build/lib/dendropy 2025-06-10T16:03:21,693 copying src/dendropy/__init__.py -> build/lib/dendropy 2025-06-10T16:03:21,696 creating build/lib/dendropy/plot 2025-06-10T16:03:21,697 copying src/dendropy/plot/asciiplot.py -> build/lib/dendropy/plot 2025-06-10T16:03:21,700 copying src/dendropy/plot/tikzplot.py -> build/lib/dendropy/plot 2025-06-10T16:03:21,703 copying src/dendropy/plot/__init__.py -> build/lib/dendropy/plot 2025-06-10T16:03:21,705 creating build/lib/dendropy/datamodel 2025-06-10T16:03:21,707 copying src/dendropy/datamodel/basemodel.py -> build/lib/dendropy/datamodel 2025-06-10T16:03:21,710 copying src/dendropy/datamodel/treecollectionmodel.py -> build/lib/dendropy/datamodel 2025-06-10T16:03:21,715 copying src/dendropy/datamodel/__init__.py -> build/lib/dendropy/datamodel 2025-06-10T16:03:21,717 copying src/dendropy/datamodel/charstatemodel.py -> build/lib/dendropy/datamodel 2025-06-10T16:03:21,720 copying src/dendropy/datamodel/taxonmodel.py -> build/lib/dendropy/datamodel 2025-06-10T16:03:21,724 copying src/dendropy/datamodel/datasetmodel.py -> build/lib/dendropy/datamodel 2025-06-10T16:03:21,727 copying src/dendropy/datamodel/charmatrixmodel.py -> build/lib/dendropy/datamodel 2025-06-10T16:03:21,731 creating build/lib/dendropy/utility 2025-06-10T16:03:21,733 copying src/dendropy/utility/deprecate.py -> build/lib/dendropy/utility 2025-06-10T16:03:21,735 copying src/dendropy/utility/processio.py -> build/lib/dendropy/utility 2025-06-10T16:03:21,737 copying src/dendropy/utility/container.py -> build/lib/dendropy/utility 2025-06-10T16:03:21,740 copying src/dendropy/utility/bitprocessing.py -> build/lib/dendropy/utility 2025-06-10T16:03:21,742 copying src/dendropy/utility/urlio.py -> build/lib/dendropy/utility 2025-06-10T16:03:21,744 copying src/dendropy/utility/metavar.py -> build/lib/dendropy/utility 2025-06-10T16:03:21,746 copying src/dendropy/utility/terminal.py -> build/lib/dendropy/utility 2025-06-10T16:03:21,748 copying src/dendropy/utility/debug.py -> build/lib/dendropy/utility 2025-06-10T16:03:21,750 copying src/dendropy/utility/bibtex.py -> build/lib/dendropy/utility 2025-06-10T16:03:21,753 copying src/dendropy/utility/cli.py -> build/lib/dendropy/utility 2025-06-10T16:03:21,755 copying src/dendropy/utility/vcsinfo.py -> build/lib/dendropy/utility 2025-06-10T16:03:21,758 copying src/dendropy/utility/__init__.py -> build/lib/dendropy/utility 2025-06-10T16:03:21,759 copying src/dendropy/utility/messaging.py -> build/lib/dendropy/utility 2025-06-10T16:03:21,762 copying src/dendropy/utility/textprocessing.py -> build/lib/dendropy/utility 2025-06-10T16:03:21,764 copying src/dendropy/utility/filesys.py -> build/lib/dendropy/utility 2025-06-10T16:03:21,767 copying src/dendropy/utility/error.py -> build/lib/dendropy/utility 2025-06-10T16:03:21,769 copying src/dendropy/utility/timeprocessing.py -> build/lib/dendropy/utility 2025-06-10T16:03:21,771 copying src/dendropy/utility/constants.py -> build/lib/dendropy/utility 2025-06-10T16:03:21,773 creating build/lib/dendropy/model 2025-06-10T16:03:21,774 copying src/dendropy/model/protractedspeciation.py -> build/lib/dendropy/model 2025-06-10T16:03:21,777 copying src/dendropy/model/parsimony.py -> build/lib/dendropy/model 2025-06-10T16:03:21,780 copying src/dendropy/model/treeshape.py -> build/lib/dendropy/model 2025-06-10T16:03:21,782 copying src/dendropy/model/continuous.py -> build/lib/dendropy/model 2025-06-10T16:03:21,784 copying src/dendropy/model/discrete.py -> build/lib/dendropy/model 2025-06-10T16:03:21,787 copying src/dendropy/model/multispeciescoalescent.py -> build/lib/dendropy/model 2025-06-10T16:03:21,790 copying src/dendropy/model/birthdeath.py -> build/lib/dendropy/model 2025-06-10T16:03:21,793 copying src/dendropy/model/reconcile.py -> build/lib/dendropy/model 2025-06-10T16:03:21,796 copying src/dendropy/model/__init__.py -> build/lib/dendropy/model 2025-06-10T16:03:21,798 copying src/dendropy/model/coalescent.py -> build/lib/dendropy/model 2025-06-10T16:03:21,802 creating build/lib/dendropy/interop 2025-06-10T16:03:21,803 copying src/dendropy/interop/ete.py -> build/lib/dendropy/interop 2025-06-10T16:03:21,805 copying src/dendropy/interop/itol.py -> build/lib/dendropy/interop 2025-06-10T16:03:21,808 copying src/dendropy/interop/raxml.py -> build/lib/dendropy/interop 2025-06-10T16:03:21,811 copying src/dendropy/interop/gbif.py -> build/lib/dendropy/interop 2025-06-10T16:03:21,813 copying src/dendropy/interop/seqgen.py -> build/lib/dendropy/interop 2025-06-10T16:03:21,816 copying src/dendropy/interop/muscle.py -> build/lib/dendropy/interop 2025-06-10T16:03:21,818 copying src/dendropy/interop/rstats.py -> build/lib/dendropy/interop 2025-06-10T16:03:21,821 copying src/dendropy/interop/__init__.py -> build/lib/dendropy/interop 2025-06-10T16:03:21,823 copying src/dendropy/interop/biopython.py -> build/lib/dendropy/interop 2025-06-10T16:03:21,824 copying src/dendropy/interop/paup.py -> build/lib/dendropy/interop 2025-06-10T16:03:21,827 copying src/dendropy/interop/rspr.py -> build/lib/dendropy/interop 2025-06-10T16:03:21,830 copying src/dendropy/interop/ape.py -> build/lib/dendropy/interop 2025-06-10T16:03:21,832 copying src/dendropy/interop/entrez.py -> build/lib/dendropy/interop 2025-06-10T16:03:21,834 copying src/dendropy/interop/genbank.py -> build/lib/dendropy/interop 2025-06-10T16:03:21,838 creating build/lib/dendropy/mathlib 2025-06-10T16:03:21,839 copying src/dendropy/mathlib/mathfn.py -> build/lib/dendropy/mathlib 2025-06-10T16:03:21,841 copying src/dendropy/mathlib/probability.py -> build/lib/dendropy/mathlib 2025-06-10T16:03:21,843 copying src/dendropy/mathlib/statistics.py -> build/lib/dendropy/mathlib 2025-06-10T16:03:21,845 copying src/dendropy/mathlib/__init__.py -> build/lib/dendropy/mathlib 2025-06-10T16:03:21,848 creating build/lib/dendropy/dataio 2025-06-10T16:03:21,849 copying src/dendropy/dataio/fastareader.py -> build/lib/dendropy/dataio 2025-06-10T16:03:21,851 copying src/dendropy/dataio/fastawriter.py -> build/lib/dendropy/dataio 2025-06-10T16:03:21,853 copying src/dendropy/dataio/nexmlreader.py -> build/lib/dendropy/dataio 2025-06-10T16:03:21,856 copying src/dendropy/dataio/nexusyielder.py -> build/lib/dendropy/dataio 2025-06-10T16:03:21,859 copying src/dendropy/dataio/nexusreader.py -> build/lib/dendropy/dataio 2025-06-10T16:03:21,862 copying src/dendropy/dataio/phylipwriter.py -> build/lib/dendropy/dataio 2025-06-10T16:03:21,865 copying src/dendropy/dataio/xmlprocessing.py -> build/lib/dendropy/dataio 2025-06-10T16:03:21,867 copying src/dendropy/dataio/nexusprocessing.py -> build/lib/dendropy/dataio 2025-06-10T16:03:21,870 copying src/dendropy/dataio/nexuswriter.py -> build/lib/dendropy/dataio 2025-06-10T16:03:21,873 copying src/dendropy/dataio/phylipreader.py -> build/lib/dendropy/dataio 2025-06-10T16:03:21,875 copying src/dendropy/dataio/__init__.py -> build/lib/dendropy/dataio 2025-06-10T16:03:21,878 copying src/dendropy/dataio/newick.py -> build/lib/dendropy/dataio 2025-06-10T16:03:21,879 copying src/dendropy/dataio/nexmlyielder.py -> build/lib/dendropy/dataio 2025-06-10T16:03:21,881 copying src/dendropy/dataio/tokenizer.py -> build/lib/dendropy/dataio 2025-06-10T16:03:21,884 copying src/dendropy/dataio/newickyielder.py -> build/lib/dendropy/dataio 2025-06-10T16:03:21,886 copying src/dendropy/dataio/ioservice.py -> build/lib/dendropy/dataio 2025-06-10T16:03:21,888 copying src/dendropy/dataio/multiphylipreader.py -> build/lib/dendropy/dataio 2025-06-10T16:03:21,890 copying src/dendropy/dataio/nexmlwriter.py -> build/lib/dendropy/dataio 2025-06-10T16:03:21,893 copying src/dendropy/dataio/newickreader.py -> build/lib/dendropy/dataio 2025-06-10T16:03:21,896 copying src/dendropy/dataio/newickwriter.py -> build/lib/dendropy/dataio 2025-06-10T16:03:21,899 creating build/lib/dendropy/application 2025-06-10T16:03:21,900 copying src/dendropy/application/__init__.py -> build/lib/dendropy/application 2025-06-10T16:03:21,902 copying src/dendropy/application/sumlabels.py -> build/lib/dendropy/application 2025-06-10T16:03:21,905 copying src/dendropy/application/sumtrees.py -> build/lib/dendropy/application 2025-06-10T16:03:21,909 copying src/dendropy/application/dendropy_format.py -> build/lib/dendropy/application 2025-06-10T16:03:21,912 creating build/lib/dendropy/legacy 2025-06-10T16:03:21,913 copying src/dendropy/legacy/treecalc.py -> build/lib/dendropy/legacy 2025-06-10T16:03:21,915 copying src/dendropy/legacy/popgenstat.py -> build/lib/dendropy/legacy 2025-06-10T16:03:21,918 copying src/dendropy/legacy/seqsim.py -> build/lib/dendropy/legacy 2025-06-10T16:03:21,920 copying src/dendropy/legacy/treesplit.py -> build/lib/dendropy/legacy 2025-06-10T16:03:21,923 copying src/dendropy/legacy/continuous.py -> build/lib/dendropy/legacy 2025-06-10T16:03:21,925 copying src/dendropy/legacy/popgensim.py -> build/lib/dendropy/legacy 2025-06-10T16:03:21,927 copying src/dendropy/legacy/treesim.py -> build/lib/dendropy/legacy 2025-06-10T16:03:21,929 copying src/dendropy/legacy/treemanip.py -> build/lib/dendropy/legacy 2025-06-10T16:03:21,931 copying src/dendropy/legacy/reconcile.py -> build/lib/dendropy/legacy 2025-06-10T16:03:21,933 copying src/dendropy/legacy/__init__.py -> build/lib/dendropy/legacy 2025-06-10T16:03:21,935 copying src/dendropy/legacy/coalescent.py -> build/lib/dendropy/legacy 2025-06-10T16:03:21,937 copying src/dendropy/legacy/seqmodel.py -> build/lib/dendropy/legacy 2025-06-10T16:03:21,939 copying src/dendropy/legacy/ncbi.py -> build/lib/dendropy/legacy 2025-06-10T16:03:21,942 copying src/dendropy/legacy/treesum.py -> build/lib/dendropy/legacy 2025-06-10T16:03:21,945 creating build/lib/dendropy/calculate 2025-06-10T16:03:21,946 copying src/dendropy/calculate/mathfn.py -> build/lib/dendropy/calculate 2025-06-10T16:03:21,948 copying src/dendropy/calculate/treecompare.py -> build/lib/dendropy/calculate 2025-06-10T16:03:21,951 copying src/dendropy/calculate/popgenstat.py -> build/lib/dendropy/calculate 2025-06-10T16:03:21,953 copying src/dendropy/calculate/probability.py -> build/lib/dendropy/calculate 2025-06-10T16:03:21,956 copying src/dendropy/calculate/statistics.py -> build/lib/dendropy/calculate 2025-06-10T16:03:21,958 copying src/dendropy/calculate/treescore.py -> build/lib/dendropy/calculate 2025-06-10T16:03:21,960 copying src/dendropy/calculate/__init__.py -> build/lib/dendropy/calculate 2025-06-10T16:03:21,962 copying src/dendropy/calculate/profiledistance.py -> build/lib/dendropy/calculate 2025-06-10T16:03:21,965 copying src/dendropy/calculate/treemeasure.py -> build/lib/dendropy/calculate 2025-06-10T16:03:21,967 copying src/dendropy/calculate/combinatorics.py -> build/lib/dendropy/calculate 2025-06-10T16:03:21,969 copying src/dendropy/calculate/phylogeneticdistance.py -> build/lib/dendropy/calculate 2025-06-10T16:03:21,972 copying src/dendropy/calculate/treesum.py -> build/lib/dendropy/calculate 2025-06-10T16:03:21,976 creating build/lib/dendropy/simulate 2025-06-10T16:03:21,976 copying src/dendropy/simulate/popgensim.py -> build/lib/dendropy/simulate 2025-06-10T16:03:21,979 copying src/dendropy/simulate/treesim.py -> build/lib/dendropy/simulate 2025-06-10T16:03:21,981 copying src/dendropy/simulate/__init__.py -> build/lib/dendropy/simulate 2025-06-10T16:03:21,983 copying src/dendropy/simulate/charsim.py -> build/lib/dendropy/simulate 2025-06-10T16:03:21,986 creating build/lib/dendropy/datamodel/treemodel 2025-06-10T16:03:21,987 copying src/dendropy/datamodel/treemodel/_tree.py -> build/lib/dendropy/datamodel/treemodel 2025-06-10T16:03:21,992 copying src/dendropy/datamodel/treemodel/_node.py -> build/lib/dendropy/datamodel/treemodel 2025-06-10T16:03:21,995 copying src/dendropy/datamodel/treemodel/_bipartition.py -> build/lib/dendropy/datamodel/treemodel 2025-06-10T16:03:21,998 copying src/dendropy/datamodel/treemodel/_edge.py -> build/lib/dendropy/datamodel/treemodel 2025-06-10T16:03:22,001 copying src/dendropy/datamodel/treemodel/__init__.py -> build/lib/dendropy/datamodel/treemodel 2025-06-10T16:03:22,003 creating build/lib/dendropy/utility/libexec 2025-06-10T16:03:22,004 copying src/dendropy/utility/libexec/__init__.py -> build/lib/dendropy/utility/libexec 2025-06-10T16:03:22,006 running egg_info 2025-06-10T16:03:22,037 writing src/DendroPy.egg-info/PKG-INFO 2025-06-10T16:03:22,040 writing dependency_links to src/DendroPy.egg-info/dependency_links.txt 2025-06-10T16:03:22,042 writing entry points to src/DendroPy.egg-info/entry_points.txt 2025-06-10T16:03:22,044 writing requirements to src/DendroPy.egg-info/requires.txt 2025-06-10T16:03:22,045 writing top-level names to src/DendroPy.egg-info/top_level.txt 2025-06-10T16:03:22,105 reading manifest file 'src/DendroPy.egg-info/SOURCES.txt' 2025-06-10T16:03:22,114 reading manifest template 'MANIFEST.in' 2025-06-10T16:03:22,115 warning: no files found matching 'README.rst' 2025-06-10T16:03:22,116 warning: no files found matching 'doc/Makefile' 2025-06-10T16:03:22,116 warning: no files found matching '*' under directory 'doc/source' 2025-06-10T16:03:22,117 warning: no files found matching '*' under directory 'tests/data' 2025-06-10T16:03:22,118 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2025-06-10T16:03:22,119 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2025-06-10T16:03:22,119 warning: no previously-included files matching '.gitignore' found anywhere in distribution 2025-06-10T16:03:22,120 warning: no previously-included files matching '.gitattributes' found anywhere in distribution 2025-06-10T16:03:22,121 warning: no previously-included files matching '.idea' found anywhere in distribution 2025-06-10T16:03:22,122 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2025-06-10T16:03:22,123 adding license file 'LICENSE.rst' 2025-06-10T16:03:22,124 adding license file 'NOTICES.rst' 2025-06-10T16:03:22,124 adding license file 'AUTHORS.rst' 2025-06-10T16:03:22,130 writing manifest file 'src/DendroPy.egg-info/SOURCES.txt' 2025-06-10T16:03:22,196 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-06-10T16:03:22,196 !! 2025-06-10T16:03:22,198 ******************************************************************************** 2025-06-10T16:03:22,199 Please avoid running ``setup.py`` directly. 2025-06-10T16:03:22,199 Instead, use pypa/build, pypa/installer or other 2025-06-10T16:03:22,200 standards-based tools. 2025-06-10T16:03:22,201 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-06-10T16:03:22,202 or your builds will no longer be supported. 2025-06-10T16:03:22,203 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-06-10T16:03:22,204 ******************************************************************************** 2025-06-10T16:03:22,205 !! 2025-06-10T16:03:22,205 self.initialize_options() 2025-06-10T16:03:22,226 installing to build/bdist.linux-armv7l/wheel 2025-06-10T16:03:22,227 running install 2025-06-10T16:03:22,249 running install_lib 2025-06-10T16:03:22,279 creating build/bdist.linux-armv7l/wheel 2025-06-10T16:03:22,282 creating build/bdist.linux-armv7l/wheel/dendropy 2025-06-10T16:03:22,284 creating build/bdist.linux-armv7l/wheel/dendropy/plot 2025-06-10T16:03:22,285 copying build/lib/dendropy/plot/asciiplot.py -> build/bdist.linux-armv7l/wheel/./dendropy/plot 2025-06-10T16:03:22,287 copying build/lib/dendropy/plot/tikzplot.py -> build/bdist.linux-armv7l/wheel/./dendropy/plot 2025-06-10T16:03:22,290 copying build/lib/dendropy/plot/__init__.py -> build/bdist.linux-armv7l/wheel/./dendropy/plot 2025-06-10T16:03:22,293 creating build/bdist.linux-armv7l/wheel/dendropy/datamodel 2025-06-10T16:03:22,294 creating build/bdist.linux-armv7l/wheel/dendropy/datamodel/treemodel 2025-06-10T16:03:22,296 copying build/lib/dendropy/datamodel/treemodel/_tree.py -> build/bdist.linux-armv7l/wheel/./dendropy/datamodel/treemodel 2025-06-10T16:03:22,301 copying build/lib/dendropy/datamodel/treemodel/_node.py -> build/bdist.linux-armv7l/wheel/./dendropy/datamodel/treemodel 2025-06-10T16:03:22,304 copying build/lib/dendropy/datamodel/treemodel/_bipartition.py -> build/bdist.linux-armv7l/wheel/./dendropy/datamodel/treemodel 2025-06-10T16:03:22,307 copying build/lib/dendropy/datamodel/treemodel/_edge.py -> build/bdist.linux-armv7l/wheel/./dendropy/datamodel/treemodel 2025-06-10T16:03:22,309 copying build/lib/dendropy/datamodel/treemodel/__init__.py -> build/bdist.linux-armv7l/wheel/./dendropy/datamodel/treemodel 2025-06-10T16:03:22,311 copying build/lib/dendropy/datamodel/basemodel.py -> build/bdist.linux-armv7l/wheel/./dendropy/datamodel 2025-06-10T16:03:22,314 copying build/lib/dendropy/datamodel/treecollectionmodel.py -> build/bdist.linux-armv7l/wheel/./dendropy/datamodel 2025-06-10T16:03:22,319 copying build/lib/dendropy/datamodel/__init__.py -> build/bdist.linux-armv7l/wheel/./dendropy/datamodel 2025-06-10T16:03:22,320 copying build/lib/dendropy/datamodel/charstatemodel.py -> build/bdist.linux-armv7l/wheel/./dendropy/datamodel 2025-06-10T16:03:22,323 copying build/lib/dendropy/datamodel/taxonmodel.py -> build/bdist.linux-armv7l/wheel/./dendropy/datamodel 2025-06-10T16:03:22,327 copying build/lib/dendropy/datamodel/datasetmodel.py -> build/bdist.linux-armv7l/wheel/./dendropy/datamodel 2025-06-10T16:03:22,330 copying build/lib/dendropy/datamodel/charmatrixmodel.py -> build/bdist.linux-armv7l/wheel/./dendropy/datamodel 2025-06-10T16:03:22,333 copying build/lib/dendropy/__main__.py -> build/bdist.linux-armv7l/wheel/./dendropy 2025-06-10T16:03:22,336 creating build/bdist.linux-armv7l/wheel/dendropy/utility 2025-06-10T16:03:22,337 copying build/lib/dendropy/utility/deprecate.py -> build/bdist.linux-armv7l/wheel/./dendropy/utility 2025-06-10T16:03:22,339 copying build/lib/dendropy/utility/processio.py -> build/bdist.linux-armv7l/wheel/./dendropy/utility 2025-06-10T16:03:22,342 creating build/bdist.linux-armv7l/wheel/dendropy/utility/libexec 2025-06-10T16:03:22,343 copying build/lib/dendropy/utility/libexec/__init__.py -> build/bdist.linux-armv7l/wheel/./dendropy/utility/libexec 2025-06-10T16:03:22,345 copying build/lib/dendropy/utility/container.py -> build/bdist.linux-armv7l/wheel/./dendropy/utility 2025-06-10T16:03:22,348 copying build/lib/dendropy/utility/bitprocessing.py -> build/bdist.linux-armv7l/wheel/./dendropy/utility 2025-06-10T16:03:22,350 copying build/lib/dendropy/utility/urlio.py -> build/bdist.linux-armv7l/wheel/./dendropy/utility 2025-06-10T16:03:22,352 copying build/lib/dendropy/utility/metavar.py -> build/bdist.linux-armv7l/wheel/./dendropy/utility 2025-06-10T16:03:22,354 copying build/lib/dendropy/utility/terminal.py -> build/bdist.linux-armv7l/wheel/./dendropy/utility 2025-06-10T16:03:22,356 copying build/lib/dendropy/utility/debug.py -> build/bdist.linux-armv7l/wheel/./dendropy/utility 2025-06-10T16:03:22,357 copying build/lib/dendropy/utility/bibtex.py -> build/bdist.linux-armv7l/wheel/./dendropy/utility 2025-06-10T16:03:22,360 copying build/lib/dendropy/utility/cli.py -> build/bdist.linux-armv7l/wheel/./dendropy/utility 2025-06-10T16:03:22,362 copying build/lib/dendropy/utility/vcsinfo.py -> build/bdist.linux-armv7l/wheel/./dendropy/utility 2025-06-10T16:03:22,364 copying build/lib/dendropy/utility/__init__.py -> build/bdist.linux-armv7l/wheel/./dendropy/utility 2025-06-10T16:03:22,366 copying build/lib/dendropy/utility/messaging.py -> build/bdist.linux-armv7l/wheel/./dendropy/utility 2025-06-10T16:03:22,368 copying build/lib/dendropy/utility/textprocessing.py -> build/bdist.linux-armv7l/wheel/./dendropy/utility 2025-06-10T16:03:22,370 copying build/lib/dendropy/utility/filesys.py -> build/bdist.linux-armv7l/wheel/./dendropy/utility 2025-06-10T16:03:22,373 copying build/lib/dendropy/utility/error.py -> build/bdist.linux-armv7l/wheel/./dendropy/utility 2025-06-10T16:03:22,375 copying build/lib/dendropy/utility/timeprocessing.py -> build/bdist.linux-armv7l/wheel/./dendropy/utility 2025-06-10T16:03:22,378 copying build/lib/dendropy/utility/constants.py -> build/bdist.linux-armv7l/wheel/./dendropy/utility 2025-06-10T16:03:22,380 copying build/lib/dendropy/__init__.py -> build/bdist.linux-armv7l/wheel/./dendropy 2025-06-10T16:03:22,383 creating build/bdist.linux-armv7l/wheel/dendropy/model 2025-06-10T16:03:22,384 copying build/lib/dendropy/model/protractedspeciation.py -> build/bdist.linux-armv7l/wheel/./dendropy/model 2025-06-10T16:03:22,387 copying build/lib/dendropy/model/parsimony.py -> build/bdist.linux-armv7l/wheel/./dendropy/model 2025-06-10T16:03:22,390 copying build/lib/dendropy/model/treeshape.py -> build/bdist.linux-armv7l/wheel/./dendropy/model 2025-06-10T16:03:22,392 copying build/lib/dendropy/model/continuous.py -> build/bdist.linux-armv7l/wheel/./dendropy/model 2025-06-10T16:03:22,394 copying build/lib/dendropy/model/discrete.py -> build/bdist.linux-armv7l/wheel/./dendropy/model 2025-06-10T16:03:22,397 copying build/lib/dendropy/model/multispeciescoalescent.py -> build/bdist.linux-armv7l/wheel/./dendropy/model 2025-06-10T16:03:22,400 copying build/lib/dendropy/model/birthdeath.py -> build/bdist.linux-armv7l/wheel/./dendropy/model 2025-06-10T16:03:22,404 copying build/lib/dendropy/model/reconcile.py -> build/bdist.linux-armv7l/wheel/./dendropy/model 2025-06-10T16:03:22,407 copying build/lib/dendropy/model/__init__.py -> build/bdist.linux-armv7l/wheel/./dendropy/model 2025-06-10T16:03:22,409 copying build/lib/dendropy/model/coalescent.py -> build/bdist.linux-armv7l/wheel/./dendropy/model 2025-06-10T16:03:22,412 creating build/bdist.linux-armv7l/wheel/dendropy/interop 2025-06-10T16:03:22,413 copying build/lib/dendropy/interop/ete.py -> build/bdist.linux-armv7l/wheel/./dendropy/interop 2025-06-10T16:03:22,415 copying build/lib/dendropy/interop/itol.py -> build/bdist.linux-armv7l/wheel/./dendropy/interop 2025-06-10T16:03:22,418 copying build/lib/dendropy/interop/raxml.py -> build/bdist.linux-armv7l/wheel/./dendropy/interop 2025-06-10T16:03:22,421 copying build/lib/dendropy/interop/gbif.py -> build/bdist.linux-armv7l/wheel/./dendropy/interop 2025-06-10T16:03:22,424 copying build/lib/dendropy/interop/seqgen.py -> build/bdist.linux-armv7l/wheel/./dendropy/interop 2025-06-10T16:03:22,427 copying build/lib/dendropy/interop/muscle.py -> build/bdist.linux-armv7l/wheel/./dendropy/interop 2025-06-10T16:03:22,428 copying build/lib/dendropy/interop/rstats.py -> build/bdist.linux-armv7l/wheel/./dendropy/interop 2025-06-10T16:03:22,431 copying build/lib/dendropy/interop/__init__.py -> build/bdist.linux-armv7l/wheel/./dendropy/interop 2025-06-10T16:03:22,433 copying build/lib/dendropy/interop/biopython.py -> build/bdist.linux-armv7l/wheel/./dendropy/interop 2025-06-10T16:03:22,435 copying build/lib/dendropy/interop/paup.py -> build/bdist.linux-armv7l/wheel/./dendropy/interop 2025-06-10T16:03:22,438 copying build/lib/dendropy/interop/rspr.py -> build/bdist.linux-armv7l/wheel/./dendropy/interop 2025-06-10T16:03:22,440 copying build/lib/dendropy/interop/ape.py -> build/bdist.linux-armv7l/wheel/./dendropy/interop 2025-06-10T16:03:22,443 copying build/lib/dendropy/interop/entrez.py -> build/bdist.linux-armv7l/wheel/./dendropy/interop 2025-06-10T16:03:22,445 copying build/lib/dendropy/interop/genbank.py -> build/bdist.linux-armv7l/wheel/./dendropy/interop 2025-06-10T16:03:22,448 creating build/bdist.linux-armv7l/wheel/dendropy/mathlib 2025-06-10T16:03:22,449 copying build/lib/dendropy/mathlib/mathfn.py -> build/bdist.linux-armv7l/wheel/./dendropy/mathlib 2025-06-10T16:03:22,452 copying build/lib/dendropy/mathlib/probability.py -> build/bdist.linux-armv7l/wheel/./dendropy/mathlib 2025-06-10T16:03:22,453 copying build/lib/dendropy/mathlib/statistics.py -> build/bdist.linux-armv7l/wheel/./dendropy/mathlib 2025-06-10T16:03:22,455 copying build/lib/dendropy/mathlib/__init__.py -> build/bdist.linux-armv7l/wheel/./dendropy/mathlib 2025-06-10T16:03:22,458 creating build/bdist.linux-armv7l/wheel/dendropy/dataio 2025-06-10T16:03:22,459 copying build/lib/dendropy/dataio/fastareader.py -> build/bdist.linux-armv7l/wheel/./dendropy/dataio 2025-06-10T16:03:22,462 copying build/lib/dendropy/dataio/fastawriter.py -> build/bdist.linux-armv7l/wheel/./dendropy/dataio 2025-06-10T16:03:22,464 copying build/lib/dendropy/dataio/nexmlreader.py -> build/bdist.linux-armv7l/wheel/./dendropy/dataio 2025-06-10T16:03:22,467 copying build/lib/dendropy/dataio/nexusyielder.py -> build/bdist.linux-armv7l/wheel/./dendropy/dataio 2025-06-10T16:03:22,470 copying build/lib/dendropy/dataio/nexusreader.py -> build/bdist.linux-armv7l/wheel/./dendropy/dataio 2025-06-10T16:03:22,473 copying build/lib/dendropy/dataio/phylipwriter.py -> build/bdist.linux-armv7l/wheel/./dendropy/dataio 2025-06-10T16:03:22,475 copying build/lib/dendropy/dataio/xmlprocessing.py -> build/bdist.linux-armv7l/wheel/./dendropy/dataio 2025-06-10T16:03:22,478 copying build/lib/dendropy/dataio/nexusprocessing.py -> build/bdist.linux-armv7l/wheel/./dendropy/dataio 2025-06-10T16:03:22,481 copying build/lib/dendropy/dataio/nexuswriter.py -> build/bdist.linux-armv7l/wheel/./dendropy/dataio 2025-06-10T16:03:22,483 copying build/lib/dendropy/dataio/phylipreader.py -> build/bdist.linux-armv7l/wheel/./dendropy/dataio 2025-06-10T16:03:22,486 copying build/lib/dendropy/dataio/__init__.py -> build/bdist.linux-armv7l/wheel/./dendropy/dataio 2025-06-10T16:03:22,488 copying build/lib/dendropy/dataio/newick.py -> build/bdist.linux-armv7l/wheel/./dendropy/dataio 2025-06-10T16:03:22,491 copying build/lib/dendropy/dataio/nexmlyielder.py -> build/bdist.linux-armv7l/wheel/./dendropy/dataio 2025-06-10T16:03:22,493 copying build/lib/dendropy/dataio/tokenizer.py -> build/bdist.linux-armv7l/wheel/./dendropy/dataio 2025-06-10T16:03:22,495 copying build/lib/dendropy/dataio/newickyielder.py -> build/bdist.linux-armv7l/wheel/./dendropy/dataio 2025-06-10T16:03:22,497 copying build/lib/dendropy/dataio/ioservice.py -> build/bdist.linux-armv7l/wheel/./dendropy/dataio 2025-06-10T16:03:22,500 copying build/lib/dendropy/dataio/multiphylipreader.py -> build/bdist.linux-armv7l/wheel/./dendropy/dataio 2025-06-10T16:03:22,502 copying build/lib/dendropy/dataio/nexmlwriter.py -> build/bdist.linux-armv7l/wheel/./dendropy/dataio 2025-06-10T16:03:22,505 copying build/lib/dendropy/dataio/newickreader.py -> build/bdist.linux-armv7l/wheel/./dendropy/dataio 2025-06-10T16:03:22,508 copying build/lib/dendropy/dataio/newickwriter.py -> build/bdist.linux-armv7l/wheel/./dendropy/dataio 2025-06-10T16:03:22,511 creating build/bdist.linux-armv7l/wheel/dendropy/application 2025-06-10T16:03:22,512 copying build/lib/dendropy/application/__init__.py -> build/bdist.linux-armv7l/wheel/./dendropy/application 2025-06-10T16:03:22,514 copying build/lib/dendropy/application/sumlabels.py -> build/bdist.linux-armv7l/wheel/./dendropy/application 2025-06-10T16:03:22,517 copying build/lib/dendropy/application/sumtrees.py -> build/bdist.linux-armv7l/wheel/./dendropy/application 2025-06-10T16:03:22,521 copying build/lib/dendropy/application/dendropy_format.py -> build/bdist.linux-armv7l/wheel/./dendropy/application 2025-06-10T16:03:22,524 creating build/bdist.linux-armv7l/wheel/dendropy/legacy 2025-06-10T16:03:22,525 copying build/lib/dendropy/legacy/treecalc.py -> build/bdist.linux-armv7l/wheel/./dendropy/legacy 2025-06-10T16:03:22,528 copying build/lib/dendropy/legacy/popgenstat.py -> build/bdist.linux-armv7l/wheel/./dendropy/legacy 2025-06-10T16:03:22,530 copying build/lib/dendropy/legacy/seqsim.py -> build/bdist.linux-armv7l/wheel/./dendropy/legacy 2025-06-10T16:03:22,532 copying build/lib/dendropy/legacy/treesplit.py -> build/bdist.linux-armv7l/wheel/./dendropy/legacy 2025-06-10T16:03:22,535 copying build/lib/dendropy/legacy/continuous.py -> build/bdist.linux-armv7l/wheel/./dendropy/legacy 2025-06-10T16:03:22,537 copying build/lib/dendropy/legacy/popgensim.py -> build/bdist.linux-armv7l/wheel/./dendropy/legacy 2025-06-10T16:03:22,539 copying build/lib/dendropy/legacy/treesim.py -> build/bdist.linux-armv7l/wheel/./dendropy/legacy 2025-06-10T16:03:22,541 copying build/lib/dendropy/legacy/treemanip.py -> build/bdist.linux-armv7l/wheel/./dendropy/legacy 2025-06-10T16:03:22,543 copying build/lib/dendropy/legacy/reconcile.py -> build/bdist.linux-armv7l/wheel/./dendropy/legacy 2025-06-10T16:03:22,545 copying build/lib/dendropy/legacy/__init__.py -> build/bdist.linux-armv7l/wheel/./dendropy/legacy 2025-06-10T16:03:22,547 copying build/lib/dendropy/legacy/coalescent.py -> build/bdist.linux-armv7l/wheel/./dendropy/legacy 2025-06-10T16:03:22,549 copying build/lib/dendropy/legacy/seqmodel.py -> build/bdist.linux-armv7l/wheel/./dendropy/legacy 2025-06-10T16:03:22,551 copying build/lib/dendropy/legacy/ncbi.py -> build/bdist.linux-armv7l/wheel/./dendropy/legacy 2025-06-10T16:03:22,554 copying build/lib/dendropy/legacy/treesum.py -> build/bdist.linux-armv7l/wheel/./dendropy/legacy 2025-06-10T16:03:22,556 creating build/bdist.linux-armv7l/wheel/dendropy/calculate 2025-06-10T16:03:22,557 copying build/lib/dendropy/calculate/mathfn.py -> build/bdist.linux-armv7l/wheel/./dendropy/calculate 2025-06-10T16:03:22,559 copying build/lib/dendropy/calculate/treecompare.py -> build/bdist.linux-armv7l/wheel/./dendropy/calculate 2025-06-10T16:03:22,562 copying build/lib/dendropy/calculate/popgenstat.py -> build/bdist.linux-armv7l/wheel/./dendropy/calculate 2025-06-10T16:03:22,565 copying build/lib/dendropy/calculate/probability.py -> build/bdist.linux-armv7l/wheel/./dendropy/calculate 2025-06-10T16:03:22,567 copying build/lib/dendropy/calculate/statistics.py -> build/bdist.linux-armv7l/wheel/./dendropy/calculate 2025-06-10T16:03:22,570 copying build/lib/dendropy/calculate/treescore.py -> build/bdist.linux-armv7l/wheel/./dendropy/calculate 2025-06-10T16:03:22,572 copying build/lib/dendropy/calculate/__init__.py -> build/bdist.linux-armv7l/wheel/./dendropy/calculate 2025-06-10T16:03:22,574 copying build/lib/dendropy/calculate/profiledistance.py -> build/bdist.linux-armv7l/wheel/./dendropy/calculate 2025-06-10T16:03:22,576 copying build/lib/dendropy/calculate/treemeasure.py -> build/bdist.linux-armv7l/wheel/./dendropy/calculate 2025-06-10T16:03:22,579 copying build/lib/dendropy/calculate/combinatorics.py -> build/bdist.linux-armv7l/wheel/./dendropy/calculate 2025-06-10T16:03:22,581 copying build/lib/dendropy/calculate/phylogeneticdistance.py -> build/bdist.linux-armv7l/wheel/./dendropy/calculate 2025-06-10T16:03:22,584 copying build/lib/dendropy/calculate/treesum.py -> build/bdist.linux-armv7l/wheel/./dendropy/calculate 2025-06-10T16:03:22,588 creating build/bdist.linux-armv7l/wheel/dendropy/simulate 2025-06-10T16:03:22,589 copying build/lib/dendropy/simulate/popgensim.py -> build/bdist.linux-armv7l/wheel/./dendropy/simulate 2025-06-10T16:03:22,591 copying build/lib/dendropy/simulate/treesim.py -> build/bdist.linux-armv7l/wheel/./dendropy/simulate 2025-06-10T16:03:22,594 copying build/lib/dendropy/simulate/__init__.py -> build/bdist.linux-armv7l/wheel/./dendropy/simulate 2025-06-10T16:03:22,595 copying build/lib/dendropy/simulate/charsim.py -> build/bdist.linux-armv7l/wheel/./dendropy/simulate 2025-06-10T16:03:22,597 running install_egg_info 2025-06-10T16:03:22,628 Copying src/DendroPy.egg-info to build/bdist.linux-armv7l/wheel/./DendroPy-5.0.7-py3.11.egg-info 2025-06-10T16:03:22,642 running install_scripts 2025-06-10T16:03:22,664 creating build/bdist.linux-armv7l/wheel/dendropy-5.0.7.dist-info/WHEEL 2025-06-10T16:03:22,667 creating '/tmp/pip-wheel-geaa3lbe/dendropy-5.0.7-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-06-10T16:03:22,670 adding 'dendropy/__init__.py' 2025-06-10T16:03:22,672 adding 'dendropy/__main__.py' 2025-06-10T16:03:22,674 adding 'dendropy/application/__init__.py' 2025-06-10T16:03:22,675 adding 'dendropy/application/dendropy_format.py' 2025-06-10T16:03:22,677 adding 'dendropy/application/sumlabels.py' 2025-06-10T16:03:22,688 adding 'dendropy/application/sumtrees.py' 2025-06-10T16:03:22,691 adding 'dendropy/calculate/__init__.py' 2025-06-10T16:03:22,693 adding 'dendropy/calculate/combinatorics.py' 2025-06-10T16:03:22,694 adding 'dendropy/calculate/mathfn.py' 2025-06-10T16:03:22,700 adding 'dendropy/calculate/phylogeneticdistance.py' 2025-06-10T16:03:22,703 adding 'dendropy/calculate/popgenstat.py' 2025-06-10T16:03:22,705 adding 'dendropy/calculate/probability.py' 2025-06-10T16:03:22,707 adding 'dendropy/calculate/profiledistance.py' 2025-06-10T16:03:22,709 adding 'dendropy/calculate/statistics.py' 2025-06-10T16:03:22,713 adding 'dendropy/calculate/treecompare.py' 2025-06-10T16:03:22,715 adding 'dendropy/calculate/treemeasure.py' 2025-06-10T16:03:22,716 adding 'dendropy/calculate/treescore.py' 2025-06-10T16:03:22,719 adding 'dendropy/calculate/treesum.py' 2025-06-10T16:03:22,721 adding 'dendropy/dataio/__init__.py' 2025-06-10T16:03:22,723 adding 'dendropy/dataio/fastareader.py' 2025-06-10T16:03:22,724 adding 'dendropy/dataio/fastawriter.py' 2025-06-10T16:03:22,726 adding 'dendropy/dataio/ioservice.py' 2025-06-10T16:03:22,728 adding 'dendropy/dataio/multiphylipreader.py' 2025-06-10T16:03:22,729 adding 'dendropy/dataio/newick.py' 2025-06-10T16:03:22,733 adding 'dendropy/dataio/newickreader.py' 2025-06-10T16:03:22,736 adding 'dendropy/dataio/newickwriter.py' 2025-06-10T16:03:22,737 adding 'dendropy/dataio/newickyielder.py' 2025-06-10T16:03:22,742 adding 'dendropy/dataio/nexmlreader.py' 2025-06-10T16:03:22,745 adding 'dendropy/dataio/nexmlwriter.py' 2025-06-10T16:03:22,746 adding 'dendropy/dataio/nexmlyielder.py' 2025-06-10T16:03:22,749 adding 'dendropy/dataio/nexusprocessing.py' 2025-06-10T16:03:22,756 adding 'dendropy/dataio/nexusreader.py' 2025-06-10T16:03:22,760 adding 'dendropy/dataio/nexuswriter.py' 2025-06-10T16:03:22,761 adding 'dendropy/dataio/nexusyielder.py' 2025-06-10T16:03:22,764 adding 'dendropy/dataio/phylipreader.py' 2025-06-10T16:03:22,765 adding 'dendropy/dataio/phylipwriter.py' 2025-06-10T16:03:22,767 adding 'dendropy/dataio/tokenizer.py' 2025-06-10T16:03:22,768 adding 'dendropy/dataio/xmlprocessing.py' 2025-06-10T16:03:22,770 adding 'dendropy/datamodel/__init__.py' 2025-06-10T16:03:22,776 adding 'dendropy/datamodel/basemodel.py' 2025-06-10T16:03:22,786 adding 'dendropy/datamodel/charmatrixmodel.py' 2025-06-10T16:03:22,792 adding 'dendropy/datamodel/charstatemodel.py' 2025-06-10T16:03:22,795 adding 'dendropy/datamodel/datasetmodel.py' 2025-06-10T16:03:22,804 adding 'dendropy/datamodel/taxonmodel.py' 2025-06-10T16:03:22,817 adding 'dendropy/datamodel/treecollectionmodel.py' 2025-06-10T16:03:22,820 adding 'dendropy/datamodel/treemodel/__init__.py' 2025-06-10T16:03:22,823 adding 'dendropy/datamodel/treemodel/_bipartition.py' 2025-06-10T16:03:22,825 adding 'dendropy/datamodel/treemodel/_edge.py' 2025-06-10T16:03:22,832 adding 'dendropy/datamodel/treemodel/_node.py' 2025-06-10T16:03:22,850 adding 'dendropy/datamodel/treemodel/_tree.py' 2025-06-10T16:03:22,853 adding 'dendropy/interop/__init__.py' 2025-06-10T16:03:22,855 adding 'dendropy/interop/ape.py' 2025-06-10T16:03:22,856 adding 'dendropy/interop/biopython.py' 2025-06-10T16:03:22,857 adding 'dendropy/interop/entrez.py' 2025-06-10T16:03:22,858 adding 'dendropy/interop/ete.py' 2025-06-10T16:03:22,861 adding 'dendropy/interop/gbif.py' 2025-06-10T16:03:22,864 adding 'dendropy/interop/genbank.py' 2025-06-10T16:03:22,866 adding 'dendropy/interop/itol.py' 2025-06-10T16:03:22,868 adding 'dendropy/interop/muscle.py' 2025-06-10T16:03:22,872 adding 'dendropy/interop/paup.py' 2025-06-10T16:03:22,876 adding 'dendropy/interop/raxml.py' 2025-06-10T16:03:22,878 adding 'dendropy/interop/rspr.py' 2025-06-10T16:03:22,879 adding 'dendropy/interop/rstats.py' 2025-06-10T16:03:22,881 adding 'dendropy/interop/seqgen.py' 2025-06-10T16:03:22,883 adding 'dendropy/legacy/__init__.py' 2025-06-10T16:03:22,884 adding 'dendropy/legacy/coalescent.py' 2025-06-10T16:03:22,886 adding 'dendropy/legacy/continuous.py' 2025-06-10T16:03:22,888 adding 'dendropy/legacy/ncbi.py' 2025-06-10T16:03:22,889 adding 'dendropy/legacy/popgensim.py' 2025-06-10T16:03:22,890 adding 'dendropy/legacy/popgenstat.py' 2025-06-10T16:03:22,892 adding 'dendropy/legacy/reconcile.py' 2025-06-10T16:03:22,893 adding 'dendropy/legacy/seqmodel.py' 2025-06-10T16:03:22,894 adding 'dendropy/legacy/seqsim.py' 2025-06-10T16:03:22,896 adding 'dendropy/legacy/treecalc.py' 2025-06-10T16:03:22,897 adding 'dendropy/legacy/treemanip.py' 2025-06-10T16:03:22,898 adding 'dendropy/legacy/treesim.py' 2025-06-10T16:03:22,900 adding 'dendropy/legacy/treesplit.py' 2025-06-10T16:03:22,901 adding 'dendropy/legacy/treesum.py' 2025-06-10T16:03:22,903 adding 'dendropy/mathlib/__init__.py' 2025-06-10T16:03:22,904 adding 'dendropy/mathlib/mathfn.py' 2025-06-10T16:03:22,906 adding 'dendropy/mathlib/probability.py' 2025-06-10T16:03:22,907 adding 'dendropy/mathlib/statistics.py' 2025-06-10T16:03:22,909 adding 'dendropy/model/__init__.py' 2025-06-10T16:03:22,917 adding 'dendropy/model/birthdeath.py' 2025-06-10T16:03:22,921 adding 'dendropy/model/coalescent.py' 2025-06-10T16:03:22,924 adding 'dendropy/model/continuous.py' 2025-06-10T16:03:22,927 adding 'dendropy/model/discrete.py' 2025-06-10T16:03:22,929 adding 'dendropy/model/multispeciescoalescent.py' 2025-06-10T16:03:22,932 adding 'dendropy/model/parsimony.py' 2025-06-10T16:03:22,936 adding 'dendropy/model/protractedspeciation.py' 2025-06-10T16:03:22,940 adding 'dendropy/model/reconcile.py' 2025-06-10T16:03:22,941 adding 'dendropy/model/treeshape.py' 2025-06-10T16:03:22,943 adding 'dendropy/plot/__init__.py' 2025-06-10T16:03:22,945 adding 'dendropy/plot/asciiplot.py' 2025-06-10T16:03:22,947 adding 'dendropy/plot/tikzplot.py' 2025-06-10T16:03:22,949 adding 'dendropy/simulate/__init__.py' 2025-06-10T16:03:22,950 adding 'dendropy/simulate/charsim.py' 2025-06-10T16:03:22,952 adding 'dendropy/simulate/popgensim.py' 2025-06-10T16:03:22,954 adding 'dendropy/simulate/treesim.py' 2025-06-10T16:03:22,956 adding 'dendropy/utility/__init__.py' 2025-06-10T16:03:22,958 adding 'dendropy/utility/bibtex.py' 2025-06-10T16:03:22,959 adding 'dendropy/utility/bitprocessing.py' 2025-06-10T16:03:22,961 adding 'dendropy/utility/cli.py' 2025-06-10T16:03:22,962 adding 'dendropy/utility/constants.py' 2025-06-10T16:03:22,967 adding 'dendropy/utility/container.py' 2025-06-10T16:03:22,969 adding 'dendropy/utility/debug.py' 2025-06-10T16:03:22,970 adding 'dendropy/utility/deprecate.py' 2025-06-10T16:03:22,972 adding 'dendropy/utility/error.py' 2025-06-10T16:03:22,974 adding 'dendropy/utility/filesys.py' 2025-06-10T16:03:22,975 adding 'dendropy/utility/messaging.py' 2025-06-10T16:03:22,977 adding 'dendropy/utility/metavar.py' 2025-06-10T16:03:22,978 adding 'dendropy/utility/processio.py' 2025-06-10T16:03:22,979 adding 'dendropy/utility/terminal.py' 2025-06-10T16:03:22,981 adding 'dendropy/utility/textprocessing.py' 2025-06-10T16:03:22,982 adding 'dendropy/utility/timeprocessing.py' 2025-06-10T16:03:22,984 adding 'dendropy/utility/urlio.py' 2025-06-10T16:03:22,985 adding 'dendropy/utility/vcsinfo.py' 2025-06-10T16:03:22,987 adding 'dendropy/utility/libexec/__init__.py' 2025-06-10T16:03:22,990 adding 'dendropy-5.0.7.dist-info/licenses/AUTHORS.rst' 2025-06-10T16:03:22,991 adding 'dendropy-5.0.7.dist-info/licenses/LICENSE.rst' 2025-06-10T16:03:22,992 adding 'dendropy-5.0.7.dist-info/licenses/NOTICES.rst' 2025-06-10T16:03:22,994 adding 'dendropy-5.0.7.dist-info/METADATA' 2025-06-10T16:03:22,995 adding 'dendropy-5.0.7.dist-info/WHEEL' 2025-06-10T16:03:22,996 adding 'dendropy-5.0.7.dist-info/entry_points.txt' 2025-06-10T16:03:22,996 adding 'dendropy-5.0.7.dist-info/top_level.txt' 2025-06-10T16:03:22,997 adding 'dendropy-5.0.7.dist-info/zip-safe' 2025-06-10T16:03:23,000 adding 'dendropy-5.0.7.dist-info/RECORD' 2025-06-10T16:03:23,009 removing build/bdist.linux-armv7l/wheel 2025-06-10T16:03:23,157 Building wheel for dendropy (setup.py): finished with status 'done' 2025-06-10T16:03:23,165 Created wheel for dendropy: filename=dendropy-5.0.7-py3-none-any.whl size=465342 sha256=58506f7f1278e140493763d4e6144d073f0a2d4eb029bd0a3adce91f534485fa 2025-06-10T16:03:23,166 Stored in directory: /tmp/pip-ephem-wheel-cache-k4401v4v/wheels/27/8e/eb/dc8d16b4adfc3af7daff6fcb7d7d33ad9750a6fd7110ad9075 2025-06-10T16:03:23,183 Successfully built dendropy 2025-06-10T16:03:23,205 Removed build tracker: '/tmp/pip-build-tracker-62v1l6pp'