2025-06-10T19:41:33,529 Created temporary directory: /tmp/pip-build-tracker-rcru01sq
2025-06-10T19:41:33,531 Initialized build tracking at /tmp/pip-build-tracker-rcru01sq
2025-06-10T19:41:33,531 Created build tracker: /tmp/pip-build-tracker-rcru01sq
2025-06-10T19:41:33,532 Entered build tracker: /tmp/pip-build-tracker-rcru01sq
2025-06-10T19:41:33,533 Created temporary directory: /tmp/pip-wheel-nnt1rh7x
2025-06-10T19:41:33,539 Created temporary directory: /tmp/pip-ephem-wheel-cache-geg888aq
2025-06-10T19:41:33,591 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-06-10T19:41:33,594 2 location(s) to search for versions of strucgap:
2025-06-10T19:41:33,594 * https://pypi.org/simple/strucgap/
2025-06-10T19:41:33,594 * https://www.piwheels.org/simple/strucgap/
2025-06-10T19:41:33,594 Fetching project page and analyzing links: https://pypi.org/simple/strucgap/
2025-06-10T19:41:33,595 Getting page https://pypi.org/simple/strucgap/
2025-06-10T19:41:33,597 Found index url https://pypi.org/simple/
2025-06-10T19:41:33,753 Fetched page https://pypi.org/simple/strucgap/ as application/vnd.pypi.simple.v1+json
2025-06-10T19:41:33,756   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/d4/cf/908ee965464dceab500051b070d301fc648f14f165918a250643f754312c/strucgap-1.0.1-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-10T19:41:33,757   Found link https://files.pythonhosted.org/packages/e4/ed/c84c67d5cb18aa5d6c871bc5abb254e198230535214a7cf8f003ecf813ae/strucgap-1.0.1.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.1
2025-06-10T19:41:33,758   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/e6/0a/417b6b5e0043e5a5e92598e60b289e11bbf3a1921db8a06967ac26c821ab/strucgap-1.0.2-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-10T19:41:33,758   Found link https://files.pythonhosted.org/packages/80/b5/c0a8aca19ac9b3b37852926dab5aef22813bfb7db17e022907b7513751cd/strucgap-1.0.2.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.2
2025-06-10T19:41:33,759   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/6c/8a/8046fc9d7585c40b76f94bcc0f51462b26b460ef72eaba283adc359b1414/strucgap-1.0.3-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-10T19:41:33,760   Found link https://files.pythonhosted.org/packages/36/64/97df6dbf736d30b1ed5a0f11b09513d266c5451783575b47fadd5ba720f7/strucgap-1.0.3.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.3
2025-06-10T19:41:33,760   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/4c/cf/29374aca5d9a6e4dcb92da71d7c737883fea9dc0c784add2f46b047bcdb3/strucgap-1.0.4-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-10T19:41:33,761   Found link https://files.pythonhosted.org/packages/f7/a4/54678a7f65da22ad9bf8c1fbc22ff415a1c4c59b190aa2cc0ab02bc71a27/strucgap-1.0.4.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.4
2025-06-10T19:41:33,762   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/3e/0a/acfe362babd9946aee23c5c9b973b22704fdd4625b21d3aefc3158469a8f/strucgap-1.0.5-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-10T19:41:33,762   Found link https://files.pythonhosted.org/packages/31/14/c9640736615f7b3cd7300f1146d0f6c3c707a24e604b663635e89fb72f74/strucgap-1.0.5.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.5
2025-06-10T19:41:33,763   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/19/2b/a229156141e4f96b442c92afa912d9dc7ff7ca93d4fd40498b412eb2e492/strucgap-1.0.6-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-10T19:41:33,764   Found link https://files.pythonhosted.org/packages/47/e1/49002ee8fee4ea83a29298aeadb5da1cad51e30702a716412b435796e909/strucgap-1.0.6.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.6
2025-06-10T19:41:33,765   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/f5/96/a6e1a5e8ddaa8319d34850b3a6ee7abc4cb4a45cab48147b26c76a355af2/strucgap-1.0.7-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-10T19:41:33,765   Found link https://files.pythonhosted.org/packages/61/54/ca1a7a265a6b1ab75b75bd1d707aa4d66a91f69dd4491dbcd23a5b1d96bc/strucgap-1.0.7.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.7
2025-06-10T19:41:33,766   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/a5/9d/28f80481e570ce67b245dc87afdefa13a5a3200a6f53baccfdd8d7683250/strucgap-1.0.8-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-06-10T19:41:33,766   Found link https://files.pythonhosted.org/packages/f3/20/5427f3d9632c77f35f2d3d0565ebdf4c63366100b5c96fa50ebdfcc6a8a2/strucgap-1.0.8.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.8
2025-06-10T19:41:33,767 Fetching project page and analyzing links: https://www.piwheels.org/simple/strucgap/
2025-06-10T19:41:33,768 Getting page https://www.piwheels.org/simple/strucgap/
2025-06-10T19:41:33,769 Found index url https://www.piwheels.org/simple/
2025-06-10T19:41:33,928 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/strucgap/
2025-06-10T19:41:34,586 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/strucgap/
2025-06-10T19:41:35,746 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/strucgap/
2025-06-10T19:41:37,905 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/strucgap/
2025-06-10T19:41:42,062 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/strucgap/
2025-06-10T19:41:42,220 Could not fetch URL https://www.piwheels.org/simple/strucgap/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/strucgap/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping
2025-06-10T19:41:42,222 Skipping link: not a file: https://www.piwheels.org/simple/strucgap/
2025-06-10T19:41:42,223 Skipping link: not a file: https://pypi.org/simple/strucgap/
2025-06-10T19:41:42,241 Given no hashes to check 1 links for project 'strucgap': discarding no candidates
2025-06-10T19:41:42,243 Collecting strucgap==1.0.6
2025-06-10T19:41:42,246   Created temporary directory: /tmp/pip-unpack-k_1dn9fr
2025-06-10T19:41:42,473   Downloading strucgap-1.0.6.tar.gz (114 kB)
2025-06-10T19:41:42,611   Added strucgap==1.0.6 from https://files.pythonhosted.org/packages/47/e1/49002ee8fee4ea83a29298aeadb5da1cad51e30702a716412b435796e909/strucgap-1.0.6.tar.gz to build tracker '/tmp/pip-build-tracker-rcru01sq'
2025-06-10T19:41:42,613   Running setup.py (path:/tmp/pip-wheel-nnt1rh7x/strucgap_9359dde78feb41bb9669b0b6d43e6b94/setup.py) egg_info for package strucgap
2025-06-10T19:41:42,614   Created temporary directory: /tmp/pip-pip-egg-info-mkht4bm1
2025-06-10T19:41:42,615   Preparing metadata (setup.py): started
2025-06-10T19:41:42,616   Running command python setup.py egg_info
2025-06-10T19:41:43,478   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-06-10T19:41:43,478   !!

2025-06-10T19:41:43,479           ********************************************************************************
2025-06-10T19:41:43,480           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-06-10T19:41:43,481           License :: OSI Approved :: MIT License

2025-06-10T19:41:43,482           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-06-10T19:41:43,483           ********************************************************************************

2025-06-10T19:41:43,484   !!
2025-06-10T19:41:43,484     self._finalize_license_expression()
2025-06-10T19:41:43,507   running egg_info
2025-06-10T19:41:43,535   creating /tmp/pip-pip-egg-info-mkht4bm1/strucgap.egg-info
2025-06-10T19:41:43,536   writing /tmp/pip-pip-egg-info-mkht4bm1/strucgap.egg-info/PKG-INFO
2025-06-10T19:41:43,540   writing dependency_links to /tmp/pip-pip-egg-info-mkht4bm1/strucgap.egg-info/dependency_links.txt
2025-06-10T19:41:43,543   writing requirements to /tmp/pip-pip-egg-info-mkht4bm1/strucgap.egg-info/requires.txt
2025-06-10T19:41:43,544   writing top-level names to /tmp/pip-pip-egg-info-mkht4bm1/strucgap.egg-info/top_level.txt
2025-06-10T19:41:43,546   writing manifest file '/tmp/pip-pip-egg-info-mkht4bm1/strucgap.egg-info/SOURCES.txt'
2025-06-10T19:41:43,636   reading manifest file '/tmp/pip-pip-egg-info-mkht4bm1/strucgap.egg-info/SOURCES.txt'
2025-06-10T19:41:43,640   writing manifest file '/tmp/pip-pip-egg-info-mkht4bm1/strucgap.egg-info/SOURCES.txt'
2025-06-10T19:41:43,752   Preparing metadata (setup.py): finished with status 'done'
2025-06-10T19:41:43,757   Source in /tmp/pip-wheel-nnt1rh7x/strucgap_9359dde78feb41bb9669b0b6d43e6b94 has version 1.0.6, which satisfies requirement strucgap==1.0.6 from https://files.pythonhosted.org/packages/47/e1/49002ee8fee4ea83a29298aeadb5da1cad51e30702a716412b435796e909/strucgap-1.0.6.tar.gz
2025-06-10T19:41:43,758   Removed strucgap==1.0.6 from https://files.pythonhosted.org/packages/47/e1/49002ee8fee4ea83a29298aeadb5da1cad51e30702a716412b435796e909/strucgap-1.0.6.tar.gz from build tracker '/tmp/pip-build-tracker-rcru01sq'
2025-06-10T19:41:43,767 Created temporary directory: /tmp/pip-unpack-jme91bc7
2025-06-10T19:41:43,769 Created temporary directory: /tmp/pip-unpack-tp2ihg8d
2025-06-10T19:41:43,769 Building wheels for collected packages: strucgap
2025-06-10T19:41:43,773   Created temporary directory: /tmp/pip-wheel-wkx_ez3b
2025-06-10T19:41:43,774   DEPRECATION: Building 'strucgap' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'strucgap'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-06-10T19:41:43,776   Building wheel for strucgap (setup.py): started
2025-06-10T19:41:43,777   Destination directory: /tmp/pip-wheel-wkx_ez3b
2025-06-10T19:41:43,777   Running command python setup.py bdist_wheel
2025-06-10T19:41:44,651   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-06-10T19:41:44,651   !!

2025-06-10T19:41:44,652           ********************************************************************************
2025-06-10T19:41:44,653           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-06-10T19:41:44,655           License :: OSI Approved :: MIT License

2025-06-10T19:41:44,656           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-06-10T19:41:44,656           ********************************************************************************

2025-06-10T19:41:44,657   !!
2025-06-10T19:41:44,657     self._finalize_license_expression()
2025-06-10T19:41:44,658   running bdist_wheel
2025-06-10T19:41:44,785   running build
2025-06-10T19:41:44,785   running build_py
2025-06-10T19:41:44,815   creating build/lib/strucgap
2025-06-10T19:41:44,817   copying strucgap/functionannotation.py -> build/lib/strucgap
2025-06-10T19:41:44,821   copying strucgap/glyconetwork.py -> build/lib/strucgap
2025-06-10T19:41:44,825   copying strucgap/insighttracker.py -> build/lib/strucgap
2025-06-10T19:41:44,827   copying strucgap/datavisualization.py -> build/lib/strucgap
2025-06-10T19:41:44,836   copying strucgap/preprocess.py -> build/lib/strucgap
2025-06-10T19:41:44,839   copying strucgap/__init__.py -> build/lib/strucgap
2025-06-10T19:41:44,841   copying strucgap/glycosite.py -> build/lib/strucgap
2025-06-10T19:41:44,843   copying strucgap/glycopeptidequant.py -> build/lib/strucgap
2025-06-10T19:41:44,847   copying strucgap/glycanstructure.py -> build/lib/strucgap
2025-06-10T19:41:44,879   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-06-10T19:41:44,880   !!

2025-06-10T19:41:44,881           ********************************************************************************
2025-06-10T19:41:44,882           Please avoid running ``setup.py`` directly.
2025-06-10T19:41:44,882           Instead, use pypa/build, pypa/installer or other
2025-06-10T19:41:44,883           standards-based tools.

2025-06-10T19:41:44,884           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-06-10T19:41:44,885           or your builds will no longer be supported.

2025-06-10T19:41:44,886           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-06-10T19:41:44,887           ********************************************************************************

2025-06-10T19:41:44,888   !!
2025-06-10T19:41:44,889     self.initialize_options()
2025-06-10T19:41:44,907   installing to build/bdist.linux-armv7l/wheel
2025-06-10T19:41:44,908   running install
2025-06-10T19:41:44,931   running install_lib
2025-06-10T19:41:44,959   creating build/bdist.linux-armv7l/wheel
2025-06-10T19:41:44,961   creating build/bdist.linux-armv7l/wheel/strucgap
2025-06-10T19:41:44,962   copying build/lib/strucgap/functionannotation.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-10T19:41:44,966   copying build/lib/strucgap/glyconetwork.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-10T19:41:44,970   copying build/lib/strucgap/insighttracker.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-10T19:41:44,972   copying build/lib/strucgap/datavisualization.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-10T19:41:44,986   copying build/lib/strucgap/preprocess.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-10T19:41:44,989   copying build/lib/strucgap/__init__.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-10T19:41:44,991   copying build/lib/strucgap/glycosite.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-10T19:41:44,994   copying build/lib/strucgap/glycopeptidequant.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-10T19:41:45,000   copying build/lib/strucgap/glycanstructure.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-06-10T19:41:45,004   running install_egg_info
2025-06-10T19:41:45,038   running egg_info
2025-06-10T19:41:45,069   writing strucgap.egg-info/PKG-INFO
2025-06-10T19:41:45,072   writing dependency_links to strucgap.egg-info/dependency_links.txt
2025-06-10T19:41:45,075   writing requirements to strucgap.egg-info/requires.txt
2025-06-10T19:41:45,076   writing top-level names to strucgap.egg-info/top_level.txt
2025-06-10T19:41:45,106   reading manifest file 'strucgap.egg-info/SOURCES.txt'
2025-06-10T19:41:45,112   writing manifest file 'strucgap.egg-info/SOURCES.txt'
2025-06-10T19:41:45,113   Copying strucgap.egg-info to build/bdist.linux-armv7l/wheel/./strucgap-1.0.6-py3.11.egg-info
2025-06-10T19:41:45,122   running install_scripts
2025-06-10T19:41:45,131   creating build/bdist.linux-armv7l/wheel/strucgap-1.0.6.dist-info/WHEEL
2025-06-10T19:41:45,133   creating '/tmp/pip-wheel-wkx_ez3b/strucgap-1.0.6-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-06-10T19:41:45,136   adding 'strucgap/__init__.py'
2025-06-10T19:41:45,161   adding 'strucgap/datavisualization.py'
2025-06-10T19:41:45,172   adding 'strucgap/functionannotation.py'
2025-06-10T19:41:45,178   adding 'strucgap/glycanstructure.py'
2025-06-10T19:41:45,185   adding 'strucgap/glyconetwork.py'
2025-06-10T19:41:45,193   adding 'strucgap/glycopeptidequant.py'
2025-06-10T19:41:45,196   adding 'strucgap/glycosite.py'
2025-06-10T19:41:45,199   adding 'strucgap/insighttracker.py'
2025-06-10T19:41:45,204   adding 'strucgap/preprocess.py'
2025-06-10T19:41:45,206   adding 'strucgap-1.0.6.dist-info/METADATA'
2025-06-10T19:41:45,207   adding 'strucgap-1.0.6.dist-info/WHEEL'
2025-06-10T19:41:45,208   adding 'strucgap-1.0.6.dist-info/top_level.txt'
2025-06-10T19:41:45,208   adding 'strucgap-1.0.6.dist-info/RECORD'
2025-06-10T19:41:45,211   removing build/bdist.linux-armv7l/wheel
2025-06-10T19:41:45,330   Building wheel for strucgap (setup.py): finished with status 'done'
2025-06-10T19:41:45,333   Created wheel for strucgap: filename=strucgap-1.0.6-py3-none-any.whl size=121661 sha256=52a2ddbe6eef05ff6d1b081242b3e6df9610d96d0360e21f69c44f13065cba6b
2025-06-10T19:41:45,335   Stored in directory: /tmp/pip-ephem-wheel-cache-geg888aq/wheels/b4/51/b2/1755b1a362a6ee3c6b232ba87fbff933a732c938042a924dec
2025-06-10T19:41:45,345 Successfully built strucgap
2025-06-10T19:41:45,352 Removed build tracker: '/tmp/pip-build-tracker-rcru01sq'