2025-06-11T09:27:24,363 Created temporary directory: /tmp/pip-build-tracker-zqdxg1e1 2025-06-11T09:27:24,364 Initialized build tracking at /tmp/pip-build-tracker-zqdxg1e1 2025-06-11T09:27:24,365 Created build tracker: /tmp/pip-build-tracker-zqdxg1e1 2025-06-11T09:27:24,365 Entered build tracker: /tmp/pip-build-tracker-zqdxg1e1 2025-06-11T09:27:24,366 Created temporary directory: /tmp/pip-wheel-5ga9bzsf 2025-06-11T09:27:24,370 Created temporary directory: /tmp/pip-ephem-wheel-cache-0a5mznj_ 2025-06-11T09:27:24,422 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-06-11T09:27:24,424 2 location(s) to search for versions of td2: 2025-06-11T09:27:24,424 * https://pypi.org/simple/td2/ 2025-06-11T09:27:24,424 * https://www.piwheels.org/simple/td2/ 2025-06-11T09:27:24,425 Fetching project page and analyzing links: https://pypi.org/simple/td2/ 2025-06-11T09:27:24,426 Getting page https://pypi.org/simple/td2/ 2025-06-11T09:27:24,428 Found index url https://pypi.org/simple/ 2025-06-11T09:27:24,651 Fetched page https://pypi.org/simple/td2/ as application/vnd.pypi.simple.v1+json 2025-06-11T09:27:24,654 Skipping link: No binaries permitted for td2: https://files.pythonhosted.org/packages/43/52/258b0d913bfa795951cd68eb8f202e56bb686e2ac215bd537f5e5d8523a9/TD2-0.1.0-py3-none-any.whl (from https://pypi.org/simple/td2/) (requires-python:>=3.8) 2025-06-11T09:27:24,655 Found link https://files.pythonhosted.org/packages/ad/37/151603746c26b5ef38676339bbf67afdb530888937fbb8e1e775f27208ac/td2-0.1.0.tar.gz (from https://pypi.org/simple/td2/) (requires-python:>=3.8), version: 0.1.0 2025-06-11T09:27:24,656 Skipping link: No binaries permitted for td2: https://files.pythonhosted.org/packages/f6/f9/c52c232ea9f0677a8dcc8372c808f2db059730d017e5081a1c0ce151398c/TD2-1.0.0-py3-none-any.whl (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9) 2025-06-11T09:27:24,657 Found link https://files.pythonhosted.org/packages/42/df/2123f303f9668376b0783d67b0dc1d77ab320fcd7cd6499b54d2bbdf24ee/td2-1.0.0.tar.gz (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9), version: 1.0.0 2025-06-11T09:27:24,658 Skipping link: No binaries permitted for td2: https://files.pythonhosted.org/packages/ff/a4/ab6be14acf5c1f585afc4881d8fc05f1aa2ba8985326d9af761acf9feaa4/td2-1.0.1-py3-none-any.whl (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9) 2025-06-11T09:27:24,659 Found link https://files.pythonhosted.org/packages/27/76/0de889e7ac948b0a6c8de999fac74484afebb986c22a31f1541ed61cf3a9/td2-1.0.1.tar.gz (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9), version: 1.0.1 2025-06-11T09:27:24,659 Skipping link: No binaries permitted for td2: https://files.pythonhosted.org/packages/0b/85/7fa6d4c7d930f86d60ad89ece226cabe83198b2f640b4936c9b826934d8e/TD2-1.0.2-py3-none-any.whl (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9) 2025-06-11T09:27:24,660 Skipping link: No binaries permitted for td2: https://files.pythonhosted.org/packages/59/7f/c557088b575b11b930a810c4b08d7947c231bfbd6083e23691ab6d4f35d7/td2-1.0.2-py3-none-any.whl (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9) 2025-06-11T09:27:24,661 Found link https://files.pythonhosted.org/packages/03/86/7cacd5aebbaf6de14d05cd2c46ab4d8214bd5674713e018237f19510054f/td2-1.0.2.tar.gz (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9), version: 1.0.2 2025-06-11T09:27:24,662 Skipping link: No binaries permitted for td2: https://files.pythonhosted.org/packages/9c/12/08401c017e913b8fd32b212039af4a257aad486f53600624d391560eb554/TD2-1.0.3-py3-none-any.whl (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9) 2025-06-11T09:27:24,662 Found link https://files.pythonhosted.org/packages/f1/d4/7572f90f0da85e70bd129c15ed61ae301c5897b5e65d3156c602cf62fa1a/td2-1.0.3.tar.gz (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9), version: 1.0.3 2025-06-11T09:27:24,663 Skipping link: No binaries permitted for td2: https://files.pythonhosted.org/packages/c3/e0/adcb22d02f8881bdfce4a3c89003203115487946a2015cb5350d7c8884f3/TD2-1.0.5-py3-none-any.whl (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9) 2025-06-11T09:27:24,664 Found link https://files.pythonhosted.org/packages/d6/33/ef87f351e48b90f3fe892c982e721592fdbbf7b40d9bf34faf0a3a13198b/td2-1.0.5.tar.gz (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9), version: 1.0.5 2025-06-11T09:27:24,665 Skipping link: No binaries permitted for td2: https://files.pythonhosted.org/packages/ab/bc/6cb935774ae1b624faff92638a3422f0f12aeaf5f61ff820adbbd36464fc/td2-1.0.6-py3-none-any.whl (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9) 2025-06-11T09:27:24,665 Found link https://files.pythonhosted.org/packages/ef/4f/51dd7d1bd195d6e58d3efca71051ccd24219e3ad7c50098ecd63d9d83970/td2-1.0.6.tar.gz (from https://pypi.org/simple/td2/) (requires-python:<3.13,>=3.9), version: 1.0.6 2025-06-11T09:27:24,666 Fetching project page and analyzing links: https://www.piwheels.org/simple/td2/ 2025-06-11T09:27:24,667 Getting page https://www.piwheels.org/simple/td2/ 2025-06-11T09:27:24,668 Found index url https://www.piwheels.org/simple/ 2025-06-11T09:27:24,832 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/td2/ 2025-06-11T09:27:25,491 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/td2/ 2025-06-11T09:27:26,652 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/td2/ 2025-06-11T09:27:28,814 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/td2/ 2025-06-11T09:27:32,971 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/td2/ 2025-06-11T09:27:33,136 Could not fetch URL https://www.piwheels.org/simple/td2/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/td2/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping 2025-06-11T09:27:33,137 Skipping link: not a file: https://www.piwheels.org/simple/td2/ 2025-06-11T09:27:33,138 Skipping link: not a file: https://pypi.org/simple/td2/ 2025-06-11T09:27:33,156 Given no hashes to check 1 links for project 'td2': discarding no candidates 2025-06-11T09:27:33,158 Collecting td2==1.0.6 2025-06-11T09:27:33,160 Created temporary directory: /tmp/pip-unpack-7kf5v0ce 2025-06-11T09:27:33,558 Downloading td2-1.0.6.tar.gz (38 kB) 2025-06-11T09:27:33,689 Added td2==1.0.6 from https://files.pythonhosted.org/packages/ef/4f/51dd7d1bd195d6e58d3efca71051ccd24219e3ad7c50098ecd63d9d83970/td2-1.0.6.tar.gz to build tracker '/tmp/pip-build-tracker-zqdxg1e1' 2025-06-11T09:27:33,691 Running setup.py (path:/tmp/pip-wheel-5ga9bzsf/td2_b23e9c28b1ed4a92a24b8ce9a384d700/setup.py) egg_info for package td2 2025-06-11T09:27:33,692 Created temporary directory: /tmp/pip-pip-egg-info-pip2kprd 2025-06-11T09:27:33,693 Preparing metadata (setup.py): started 2025-06-11T09:27:33,694 Running command python setup.py egg_info 2025-06-11T09:27:34,596 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-06-11T09:27:34,597 !! 2025-06-11T09:27:34,598 ******************************************************************************** 2025-06-11T09:27:34,599 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-06-11T09:27:34,600 License :: OSI Approved :: MIT License 2025-06-11T09:27:34,601 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-11T09:27:34,601 ******************************************************************************** 2025-06-11T09:27:34,602 !! 2025-06-11T09:27:34,603 self._finalize_license_expression() 2025-06-11T09:27:34,626 running egg_info 2025-06-11T09:27:34,654 creating /tmp/pip-pip-egg-info-pip2kprd/TD2.egg-info 2025-06-11T09:27:34,655 writing /tmp/pip-pip-egg-info-pip2kprd/TD2.egg-info/PKG-INFO 2025-06-11T09:27:34,660 writing dependency_links to /tmp/pip-pip-egg-info-pip2kprd/TD2.egg-info/dependency_links.txt 2025-06-11T09:27:34,662 writing entry points to /tmp/pip-pip-egg-info-pip2kprd/TD2.egg-info/entry_points.txt 2025-06-11T09:27:34,665 writing requirements to /tmp/pip-pip-egg-info-pip2kprd/TD2.egg-info/requires.txt 2025-06-11T09:27:34,666 writing top-level names to /tmp/pip-pip-egg-info-pip2kprd/TD2.egg-info/top_level.txt 2025-06-11T09:27:34,667 writing manifest file '/tmp/pip-pip-egg-info-pip2kprd/TD2.egg-info/SOURCES.txt' 2025-06-11T09:27:34,773 reading manifest file '/tmp/pip-pip-egg-info-pip2kprd/TD2.egg-info/SOURCES.txt' 2025-06-11T09:27:34,775 reading manifest template 'MANIFEST.in' 2025-06-11T09:27:34,776 warning: no files found matching 'tables/table_*.json' 2025-06-11T09:27:34,777 adding license file 'LICENSE.txt' 2025-06-11T09:27:34,780 writing manifest file '/tmp/pip-pip-egg-info-pip2kprd/TD2.egg-info/SOURCES.txt' 2025-06-11T09:27:34,891 Preparing metadata (setup.py): finished with status 'done' 2025-06-11T09:27:34,895 Source in /tmp/pip-wheel-5ga9bzsf/td2_b23e9c28b1ed4a92a24b8ce9a384d700 has version 1.0.6, which satisfies requirement td2==1.0.6 from https://files.pythonhosted.org/packages/ef/4f/51dd7d1bd195d6e58d3efca71051ccd24219e3ad7c50098ecd63d9d83970/td2-1.0.6.tar.gz 2025-06-11T09:27:34,896 Removed td2==1.0.6 from https://files.pythonhosted.org/packages/ef/4f/51dd7d1bd195d6e58d3efca71051ccd24219e3ad7c50098ecd63d9d83970/td2-1.0.6.tar.gz from build tracker '/tmp/pip-build-tracker-zqdxg1e1' 2025-06-11T09:27:34,905 Created temporary directory: /tmp/pip-unpack-8xbat97z 2025-06-11T09:27:34,906 Created temporary directory: /tmp/pip-unpack-eq0i3z8q 2025-06-11T09:27:34,907 Building wheels for collected packages: td2 2025-06-11T09:27:34,911 Created temporary directory: /tmp/pip-wheel-8tjmwk7g 2025-06-11T09:27:34,912 DEPRECATION: Building 'td2' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'td2'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-06-11T09:27:34,913 Building wheel for td2 (setup.py): started 2025-06-11T09:27:34,915 Destination directory: /tmp/pip-wheel-8tjmwk7g 2025-06-11T09:27:34,915 Running command python setup.py bdist_wheel 2025-06-11T09:27:35,768 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-06-11T09:27:35,768 !! 2025-06-11T09:27:35,769 ******************************************************************************** 2025-06-11T09:27:35,770 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-06-11T09:27:35,771 License :: OSI Approved :: MIT License 2025-06-11T09:27:35,773 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-11T09:27:35,773 ******************************************************************************** 2025-06-11T09:27:35,775 !! 2025-06-11T09:27:35,775 self._finalize_license_expression() 2025-06-11T09:27:35,776 running bdist_wheel 2025-06-11T09:27:35,908 running build 2025-06-11T09:27:35,908 running build_py 2025-06-11T09:27:35,940 creating build/lib/tests 2025-06-11T09:27:35,943 copying tests/__init__.py -> build/lib/tests 2025-06-11T09:27:35,944 copying tests/visualize_benchmark.py -> build/lib/tests 2025-06-11T09:27:35,946 copying tests/test_find_orfs.py -> build/lib/tests 2025-06-11T09:27:35,948 copying tests/visualize_chess.py -> build/lib/tests 2025-06-11T09:27:35,950 copying tests/longorfs_low_memory.py -> build/lib/tests 2025-06-11T09:27:35,953 copying tests/partition_mane.py -> build/lib/tests 2025-06-11T09:27:35,955 copying tests/compare_peps.py -> build/lib/tests 2025-06-11T09:27:35,958 copying tests/test_translate.py -> build/lib/tests 2025-06-11T09:27:35,959 copying tests/visualize_mane_composition.py -> build/lib/tests 2025-06-11T09:27:35,961 copying tests/test_find_orfs_real.py -> build/lib/tests 2025-06-11T09:27:35,964 copying tests/test_reverse_complement.py -> build/lib/tests 2025-06-11T09:27:35,965 copying tests/ambiguous_codon_test.py -> build/lib/tests 2025-06-11T09:27:35,968 creating build/lib/api 2025-06-11T09:27:35,969 copying api/__init__.py -> build/lib/api 2025-06-11T09:27:35,972 creating build/lib/TD2 2025-06-11T09:27:35,973 copying TD2/__init__.py -> build/lib/TD2 2025-06-11T09:27:35,974 copying TD2/get_tables.py -> build/lib/TD2 2025-06-11T09:27:35,977 copying TD2/LongOrfs.py -> build/lib/TD2 2025-06-11T09:27:35,980 copying TD2/help.py -> build/lib/TD2 2025-06-11T09:27:35,982 copying TD2/translator.py -> build/lib/TD2 2025-06-11T09:27:35,984 copying TD2/Predict.py -> build/lib/TD2 2025-06-11T09:27:35,987 creating build/lib/tests/data 2025-06-11T09:27:35,988 copying tests/data/__init__.py -> build/lib/tests/data 2025-06-11T09:27:35,990 creating build/lib/TD2/tables 2025-06-11T09:27:35,992 copying TD2/tables/__init__.py -> build/lib/TD2/tables 2025-06-11T09:27:35,993 running egg_info 2025-06-11T09:27:36,021 writing TD2.egg-info/PKG-INFO 2025-06-11T09:27:36,026 writing dependency_links to TD2.egg-info/dependency_links.txt 2025-06-11T09:27:36,028 writing entry points to TD2.egg-info/entry_points.txt 2025-06-11T09:27:36,030 writing requirements to TD2.egg-info/requires.txt 2025-06-11T09:27:36,032 writing top-level names to TD2.egg-info/top_level.txt 2025-06-11T09:27:36,077 reading manifest file 'TD2.egg-info/SOURCES.txt' 2025-06-11T09:27:36,081 reading manifest template 'MANIFEST.in' 2025-06-11T09:27:36,082 warning: no files found matching 'tables/table_*.json' 2025-06-11T09:27:36,083 adding license file 'LICENSE.txt' 2025-06-11T09:27:36,087 writing manifest file 'TD2.egg-info/SOURCES.txt' 2025-06-11T09:27:36,102 copying TD2/tables/table_1.json -> build/lib/TD2/tables 2025-06-11T09:27:36,105 copying TD2/tables/table_2.json -> build/lib/TD2/tables 2025-06-11T09:27:36,107 copying TD2/tables/table_3.json -> build/lib/TD2/tables 2025-06-11T09:27:36,109 copying TD2/tables/table_4.json -> build/lib/TD2/tables 2025-06-11T09:27:36,112 copying TD2/tables/table_5.json -> build/lib/TD2/tables 2025-06-11T09:27:36,114 copying TD2/tables/table_6.json -> build/lib/TD2/tables 2025-06-11T09:27:36,116 copying TD2/tables/table_9.json -> build/lib/TD2/tables 2025-06-11T09:27:36,119 copying TD2/tables/table_10.json -> build/lib/TD2/tables 2025-06-11T09:27:36,121 copying TD2/tables/table_11.json -> build/lib/TD2/tables 2025-06-11T09:27:36,124 copying TD2/tables/table_12.json -> build/lib/TD2/tables 2025-06-11T09:27:36,126 copying TD2/tables/table_13.json -> build/lib/TD2/tables 2025-06-11T09:27:36,128 copying TD2/tables/table_14.json -> build/lib/TD2/tables 2025-06-11T09:27:36,130 copying TD2/tables/table_15.json -> build/lib/TD2/tables 2025-06-11T09:27:36,132 copying TD2/tables/table_16.json -> build/lib/TD2/tables 2025-06-11T09:27:36,135 copying TD2/tables/table_21.json -> build/lib/TD2/tables 2025-06-11T09:27:36,137 copying TD2/tables/table_22.json -> build/lib/TD2/tables 2025-06-11T09:27:36,140 copying TD2/tables/table_23.json -> build/lib/TD2/tables 2025-06-11T09:27:36,142 copying TD2/tables/table_24.json -> build/lib/TD2/tables 2025-06-11T09:27:36,144 copying TD2/tables/table_25.json -> build/lib/TD2/tables 2025-06-11T09:27:36,146 copying TD2/tables/table_26.json -> build/lib/TD2/tables 2025-06-11T09:27:36,149 copying TD2/tables/table_27.json -> build/lib/TD2/tables 2025-06-11T09:27:36,151 copying TD2/tables/table_28.json -> build/lib/TD2/tables 2025-06-11T09:27:36,153 copying TD2/tables/table_29.json -> build/lib/TD2/tables 2025-06-11T09:27:36,155 copying TD2/tables/table_30.json -> build/lib/TD2/tables 2025-06-11T09:27:36,157 copying TD2/tables/table_31.json -> build/lib/TD2/tables 2025-06-11T09:27:36,160 copying TD2/tables/table_33.json -> build/lib/TD2/tables 2025-06-11T09:27:36,203 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-06-11T09:27:36,203 !! 2025-06-11T09:27:36,204 ******************************************************************************** 2025-06-11T09:27:36,205 Please avoid running ``setup.py`` directly. 2025-06-11T09:27:36,205 Instead, use pypa/build, pypa/installer or other 2025-06-11T09:27:36,206 standards-based tools. 2025-06-11T09:27:36,207 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-06-11T09:27:36,207 or your builds will no longer be supported. 2025-06-11T09:27:36,209 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-06-11T09:27:36,209 ******************************************************************************** 2025-06-11T09:27:36,210 !! 2025-06-11T09:27:36,211 self.initialize_options() 2025-06-11T09:27:36,232 installing to build/bdist.linux-armv7l/wheel 2025-06-11T09:27:36,232 running install 2025-06-11T09:27:36,256 running install_lib 2025-06-11T09:27:36,285 creating build/bdist.linux-armv7l/wheel 2025-06-11T09:27:36,287 creating build/bdist.linux-armv7l/wheel/tests 2025-06-11T09:27:36,288 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./tests 2025-06-11T09:27:36,290 copying build/lib/tests/visualize_benchmark.py -> build/bdist.linux-armv7l/wheel/./tests 2025-06-11T09:27:36,292 copying build/lib/tests/test_find_orfs.py -> build/bdist.linux-armv7l/wheel/./tests 2025-06-11T09:27:36,294 copying build/lib/tests/visualize_chess.py -> build/bdist.linux-armv7l/wheel/./tests 2025-06-11T09:27:36,296 copying build/lib/tests/longorfs_low_memory.py -> build/bdist.linux-armv7l/wheel/./tests 2025-06-11T09:27:36,299 copying build/lib/tests/partition_mane.py -> build/bdist.linux-armv7l/wheel/./tests 2025-06-11T09:27:36,301 copying build/lib/tests/compare_peps.py -> build/bdist.linux-armv7l/wheel/./tests 2025-06-11T09:27:36,303 copying build/lib/tests/test_translate.py -> build/bdist.linux-armv7l/wheel/./tests 2025-06-11T09:27:36,305 copying build/lib/tests/visualize_mane_composition.py -> build/bdist.linux-armv7l/wheel/./tests 2025-06-11T09:27:36,307 copying build/lib/tests/test_find_orfs_real.py -> build/bdist.linux-armv7l/wheel/./tests 2025-06-11T09:27:36,309 copying build/lib/tests/test_reverse_complement.py -> build/bdist.linux-armv7l/wheel/./tests 2025-06-11T09:27:36,311 creating build/bdist.linux-armv7l/wheel/tests/data 2025-06-11T09:27:36,312 copying build/lib/tests/data/__init__.py -> build/bdist.linux-armv7l/wheel/./tests/data 2025-06-11T09:27:36,314 copying build/lib/tests/ambiguous_codon_test.py -> build/bdist.linux-armv7l/wheel/./tests 2025-06-11T09:27:36,317 creating build/bdist.linux-armv7l/wheel/api 2025-06-11T09:27:36,318 copying build/lib/api/__init__.py -> build/bdist.linux-armv7l/wheel/./api 2025-06-11T09:27:36,320 creating build/bdist.linux-armv7l/wheel/TD2 2025-06-11T09:27:36,322 copying build/lib/TD2/__init__.py -> build/bdist.linux-armv7l/wheel/./TD2 2025-06-11T09:27:36,323 copying build/lib/TD2/get_tables.py -> build/bdist.linux-armv7l/wheel/./TD2 2025-06-11T09:27:36,326 copying build/lib/TD2/LongOrfs.py -> build/bdist.linux-armv7l/wheel/./TD2 2025-06-11T09:27:36,330 creating build/bdist.linux-armv7l/wheel/TD2/tables 2025-06-11T09:27:36,331 copying build/lib/TD2/tables/table_27.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-11T09:27:36,333 copying build/lib/TD2/tables/table_28.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-11T09:27:36,335 copying build/lib/TD2/tables/table_11.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-11T09:27:36,337 copying build/lib/TD2/tables/table_12.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-11T09:27:36,339 copying build/lib/TD2/tables/__init__.py -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-11T09:27:36,340 copying build/lib/TD2/tables/table_22.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-11T09:27:36,342 copying build/lib/TD2/tables/table_21.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-11T09:27:36,344 copying build/lib/TD2/tables/table_2.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-11T09:27:36,346 copying build/lib/TD2/tables/table_29.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-11T09:27:36,348 copying build/lib/TD2/tables/table_24.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-11T09:27:36,349 copying build/lib/TD2/tables/table_33.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-11T09:27:36,351 copying build/lib/TD2/tables/table_14.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-11T09:27:36,353 copying build/lib/TD2/tables/table_3.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-11T09:27:36,355 copying build/lib/TD2/tables/table_10.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-11T09:27:36,357 copying build/lib/TD2/tables/table_1.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-11T09:27:36,359 copying build/lib/TD2/tables/table_13.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-11T09:27:36,361 copying build/lib/TD2/tables/table_30.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-11T09:27:36,363 copying build/lib/TD2/tables/table_9.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-11T09:27:36,365 copying build/lib/TD2/tables/table_5.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-11T09:27:36,367 copying build/lib/TD2/tables/table_15.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-11T09:27:36,369 copying build/lib/TD2/tables/table_31.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-11T09:27:36,371 copying build/lib/TD2/tables/table_23.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-11T09:27:36,373 copying build/lib/TD2/tables/table_16.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-11T09:27:36,375 copying build/lib/TD2/tables/table_26.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-11T09:27:36,377 copying build/lib/TD2/tables/table_6.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-11T09:27:36,379 copying build/lib/TD2/tables/table_25.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-11T09:27:36,381 copying build/lib/TD2/tables/table_4.json -> build/bdist.linux-armv7l/wheel/./TD2/tables 2025-06-11T09:27:36,383 copying build/lib/TD2/help.py -> build/bdist.linux-armv7l/wheel/./TD2 2025-06-11T09:27:36,385 copying build/lib/TD2/translator.py -> build/bdist.linux-armv7l/wheel/./TD2 2025-06-11T09:27:36,387 copying build/lib/TD2/Predict.py -> build/bdist.linux-armv7l/wheel/./TD2 2025-06-11T09:27:36,390 running install_egg_info 2025-06-11T09:27:36,425 Copying TD2.egg-info to build/bdist.linux-armv7l/wheel/./TD2-1.0.6-py3.11.egg-info 2025-06-11T09:27:36,437 running install_scripts 2025-06-11T09:27:36,451 creating build/bdist.linux-armv7l/wheel/td2-1.0.6.dist-info/WHEEL 2025-06-11T09:27:36,453 creating '/tmp/pip-wheel-8tjmwk7g/td2-1.0.6-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-06-11T09:27:36,457 adding 'TD2/LongOrfs.py' 2025-06-11T09:27:36,461 adding 'TD2/Predict.py' 2025-06-11T09:27:36,462 adding 'TD2/__init__.py' 2025-06-11T09:27:36,465 adding 'TD2/get_tables.py' 2025-06-11T09:27:36,466 adding 'TD2/help.py' 2025-06-11T09:27:36,467 adding 'TD2/translator.py' 2025-06-11T09:27:36,469 adding 'TD2/tables/__init__.py' 2025-06-11T09:27:36,471 adding 'TD2/tables/table_1.json' 2025-06-11T09:27:36,472 adding 'TD2/tables/table_10.json' 2025-06-11T09:27:36,474 adding 'TD2/tables/table_11.json' 2025-06-11T09:27:36,475 adding 'TD2/tables/table_12.json' 2025-06-11T09:27:36,476 adding 'TD2/tables/table_13.json' 2025-06-11T09:27:36,478 adding 'TD2/tables/table_14.json' 2025-06-11T09:27:36,479 adding 'TD2/tables/table_15.json' 2025-06-11T09:27:36,480 adding 'TD2/tables/table_16.json' 2025-06-11T09:27:36,482 adding 'TD2/tables/table_2.json' 2025-06-11T09:27:36,483 adding 'TD2/tables/table_21.json' 2025-06-11T09:27:36,485 adding 'TD2/tables/table_22.json' 2025-06-11T09:27:36,486 adding 'TD2/tables/table_23.json' 2025-06-11T09:27:36,488 adding 'TD2/tables/table_24.json' 2025-06-11T09:27:36,489 adding 'TD2/tables/table_25.json' 2025-06-11T09:27:36,490 adding 'TD2/tables/table_26.json' 2025-06-11T09:27:36,492 adding 'TD2/tables/table_27.json' 2025-06-11T09:27:36,493 adding 'TD2/tables/table_28.json' 2025-06-11T09:27:36,494 adding 'TD2/tables/table_29.json' 2025-06-11T09:27:36,496 adding 'TD2/tables/table_3.json' 2025-06-11T09:27:36,497 adding 'TD2/tables/table_30.json' 2025-06-11T09:27:36,498 adding 'TD2/tables/table_31.json' 2025-06-11T09:27:36,500 adding 'TD2/tables/table_33.json' 2025-06-11T09:27:36,501 adding 'TD2/tables/table_4.json' 2025-06-11T09:27:36,503 adding 'TD2/tables/table_5.json' 2025-06-11T09:27:36,504 adding 'TD2/tables/table_6.json' 2025-06-11T09:27:36,505 adding 'TD2/tables/table_9.json' 2025-06-11T09:27:36,507 adding 'api/__init__.py' 2025-06-11T09:27:36,510 adding 'td2-1.0.6.dist-info/licenses/LICENSE.txt' 2025-06-11T09:27:36,511 adding 'tests/__init__.py' 2025-06-11T09:27:36,513 adding 'tests/ambiguous_codon_test.py' 2025-06-11T09:27:36,515 adding 'tests/compare_peps.py' 2025-06-11T09:27:36,517 adding 'tests/longorfs_low_memory.py' 2025-06-11T09:27:36,519 adding 'tests/partition_mane.py' 2025-06-11T09:27:36,520 adding 'tests/test_find_orfs.py' 2025-06-11T09:27:36,522 adding 'tests/test_find_orfs_real.py' 2025-06-11T09:27:36,523 adding 'tests/test_reverse_complement.py' 2025-06-11T09:27:36,525 adding 'tests/test_translate.py' 2025-06-11T09:27:36,526 adding 'tests/visualize_benchmark.py' 2025-06-11T09:27:36,527 adding 'tests/visualize_chess.py' 2025-06-11T09:27:36,529 adding 'tests/visualize_mane_composition.py' 2025-06-11T09:27:36,530 adding 'tests/data/__init__.py' 2025-06-11T09:27:36,532 adding 'td2-1.0.6.dist-info/METADATA' 2025-06-11T09:27:36,533 adding 'td2-1.0.6.dist-info/WHEEL' 2025-06-11T09:27:36,534 adding 'td2-1.0.6.dist-info/entry_points.txt' 2025-06-11T09:27:36,534 adding 'td2-1.0.6.dist-info/top_level.txt' 2025-06-11T09:27:36,536 adding 'td2-1.0.6.dist-info/RECORD' 2025-06-11T09:27:36,538 removing build/bdist.linux-armv7l/wheel 2025-06-11T09:27:36,665 Building wheel for td2 (setup.py): finished with status 'done' 2025-06-11T09:27:36,668 Created wheel for td2: filename=td2-1.0.6-py3-none-any.whl size=55478 sha256=036476c742d1f379694335713c2332f65ac1a3aff11da540ca2963a72e530f18 2025-06-11T09:27:36,669 Stored in directory: /tmp/pip-ephem-wheel-cache-0a5mznj_/wheels/fd/6a/5d/d904c983f3f7b6b23ea9958acb5f13356b0e9af6284abd638d 2025-06-11T09:27:36,682 Successfully built td2 2025-06-11T09:27:36,686 Removed build tracker: '/tmp/pip-build-tracker-zqdxg1e1'