2025-06-11T13:11:34,094 Created temporary directory: /tmp/pip-build-tracker-2ms77dr1 2025-06-11T13:11:34,095 Initialized build tracking at /tmp/pip-build-tracker-2ms77dr1 2025-06-11T13:11:34,096 Created build tracker: /tmp/pip-build-tracker-2ms77dr1 2025-06-11T13:11:34,096 Entered build tracker: /tmp/pip-build-tracker-2ms77dr1 2025-06-11T13:11:34,097 Created temporary directory: /tmp/pip-wheel-9slawtly 2025-06-11T13:11:34,101 Created temporary directory: /tmp/pip-ephem-wheel-cache-9lnbq9au 2025-06-11T13:11:34,151 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-06-11T13:11:34,154 2 location(s) to search for versions of genomad: 2025-06-11T13:11:34,154 * https://pypi.org/simple/genomad/ 2025-06-11T13:11:34,154 * https://www.piwheels.org/simple/genomad/ 2025-06-11T13:11:34,155 Fetching project page and analyzing links: https://pypi.org/simple/genomad/ 2025-06-11T13:11:34,155 Getting page https://pypi.org/simple/genomad/ 2025-06-11T13:11:34,157 Found index url https://pypi.org/simple/ 2025-06-11T13:11:34,387 Fetched page https://pypi.org/simple/genomad/ as application/vnd.pypi.simple.v1+json 2025-06-11T13:11:34,393 Skipping link: No binaries permitted for genomad: https://files.pythonhosted.org/packages/54/1b/cbb97dbbdbabc76d9135d3e8b0e9458499e429625e3362c2b8ac17ba74ed/genomad-1.0.0-py3-none-any.whl (from https://pypi.org/simple/genomad/) (requires-python:>=3.8) 2025-06-11T13:11:34,395 Found link https://files.pythonhosted.org/packages/f7/e4/7939674f62a558422c443484e0b1db9eb54e54d458be0ccd9b37e36da587/genomad-1.0.0.tar.gz (from https://pypi.org/simple/genomad/) (requires-python:>=3.8), version: 1.0.0 2025-06-11T13:11:34,395 Skipping link: No binaries permitted for genomad: https://files.pythonhosted.org/packages/5c/d7/0ad5dd718d60403a066f29db3e1492d935e8bce4b6c01c2f9d2be3961749/genomad-1.1.0-py3-none-any.whl (from https://pypi.org/simple/genomad/) (requires-python:>=3.8) 2025-06-11T13:11:34,396 Found link https://files.pythonhosted.org/packages/28/0c/fea3dcf100673638845672c5afbb8f67771672edaf41384e84fc4ba4caaa/genomad-1.1.0.tar.gz (from https://pypi.org/simple/genomad/) (requires-python:>=3.8), version: 1.1.0 2025-06-11T13:11:34,397 Skipping link: No binaries permitted for genomad: https://files.pythonhosted.org/packages/a2/08/72abedea94f811617a4c9ba7717dfac19ad9ffdf0f984aa52e7fc5bde725/genomad-1.2.0-py3-none-any.whl (from https://pypi.org/simple/genomad/) (requires-python:>=3.8) 2025-06-11T13:11:34,397 Found link https://files.pythonhosted.org/packages/88/4c/628f473461984030c99d050607d57d5ebaa33fcfc1d89a8a912e3f4f58e1/genomad-1.2.0.tar.gz (from https://pypi.org/simple/genomad/) (requires-python:>=3.8), version: 1.2.0 2025-06-11T13:11:34,398 Skipping link: No binaries permitted for genomad: https://files.pythonhosted.org/packages/f6/01/5931109790498c71de60ee6583be37edebb3215fcd581aca926d1a352c8f/genomad-1.3.0-py3-none-any.whl (from https://pypi.org/simple/genomad/) (requires-python:>=3.8) 2025-06-11T13:11:34,399 Found link https://files.pythonhosted.org/packages/3d/15/d56143ea8e6c108519fcb786c973042504a6bdbb7997ae43bf299943e549/genomad-1.3.0.tar.gz (from https://pypi.org/simple/genomad/) (requires-python:>=3.8), version: 1.3.0 2025-06-11T13:11:34,400 Skipping link: No binaries permitted for genomad: https://files.pythonhosted.org/packages/38/4e/85a5f46c7fdefd40ec7d8f83c862d3c72fef58a81555dff5ac571c1979c4/genomad-1.3.1-py3-none-any.whl (from https://pypi.org/simple/genomad/) (requires-python:>=3.8) 2025-06-11T13:11:34,400 Found link https://files.pythonhosted.org/packages/8f/b8/9cf8ce5065f9561c359a1ff4fff7ee3c4bff7015dc4e14f0051c387d9719/genomad-1.3.1.tar.gz (from https://pypi.org/simple/genomad/) (requires-python:>=3.8), version: 1.3.1 2025-06-11T13:11:34,401 Skipping link: No binaries permitted for genomad: https://files.pythonhosted.org/packages/1d/31/70a54ab157cd3278337c9d8bf3410e1a1c4abaf50c50261c72925394e757/genomad-1.3.2-py3-none-any.whl (from https://pypi.org/simple/genomad/) (requires-python:>=3.8) 2025-06-11T13:11:34,402 Found link https://files.pythonhosted.org/packages/44/30/b34d77d6b22bd1a0706521f5f61a9cfb0c4c7d1454eed7370ebcf2ad99dc/genomad-1.3.2.tar.gz (from https://pypi.org/simple/genomad/) (requires-python:>=3.8), version: 1.3.2 2025-06-11T13:11:34,402 Skipping link: No binaries permitted for genomad: https://files.pythonhosted.org/packages/60/7c/9cf497d90ebf82b88770c0afa7fa72ac77d90e4c26940392471322a3ac6f/genomad-1.3.3-py3-none-any.whl (from https://pypi.org/simple/genomad/) (requires-python:>=3.8) 2025-06-11T13:11:34,403 Found link https://files.pythonhosted.org/packages/84/84/5f1ac7df13cf44497ad8ff957ef3d44c14981e51fdd2dd84a522ea45313c/genomad-1.3.3.tar.gz (from https://pypi.org/simple/genomad/) (requires-python:>=3.8), version: 1.3.3 2025-06-11T13:11:34,404 Skipping link: No binaries permitted for genomad: https://files.pythonhosted.org/packages/91/0b/44169b053339b5b11a88d3879bdc77be55c1837947e52e745242a60ff298/genomad-1.4.0-py3-none-any.whl (from https://pypi.org/simple/genomad/) (requires-python:>=3.8) 2025-06-11T13:11:34,404 Found link https://files.pythonhosted.org/packages/44/47/788e02c9745f0cb359e1fc20b421f422fd38dd71a31bdf757f9e517f56e7/genomad-1.4.0.tar.gz (from https://pypi.org/simple/genomad/) (requires-python:>=3.8), version: 1.4.0 2025-06-11T13:11:34,405 Skipping link: No binaries permitted for genomad: https://files.pythonhosted.org/packages/4f/6e/50526e7acccba560a0aff7935a5cd42bd83da902078648ea4333eb086033/genomad-1.5.0-py3-none-any.whl (from https://pypi.org/simple/genomad/) (requires-python:>=3.8) 2025-06-11T13:11:34,405 Found link https://files.pythonhosted.org/packages/7a/f5/09fb5cf92bb1d81ac69091ae02ba9a2cebf42e4173577442eaac33f4f2af/genomad-1.5.0.tar.gz (from https://pypi.org/simple/genomad/) (requires-python:>=3.8), version: 1.5.0 2025-06-11T13:11:34,406 Skipping link: No binaries permitted for genomad: https://files.pythonhosted.org/packages/66/7a/35af9c61275d036866d3e048868404a35696f3a744df58ba4fca682a9c7e/genomad-1.5.1-py3-none-any.whl (from https://pypi.org/simple/genomad/) (requires-python:>=3.8) 2025-06-11T13:11:34,407 Found link https://files.pythonhosted.org/packages/c8/e4/62c0d45f04e5f895e59a32df78fe98d2e10b4ebbafe8debd8962b1f36bfd/genomad-1.5.1.tar.gz (from https://pypi.org/simple/genomad/) (requires-python:>=3.8), version: 1.5.1 2025-06-11T13:11:34,407 Skipping link: No binaries permitted for genomad: https://files.pythonhosted.org/packages/ad/f8/5cc4b573ef1f7716fd1052144a5aac77de98d3b20c1c35d0841b80e07a04/genomad-1.5.2-py3-none-any.whl (from https://pypi.org/simple/genomad/) (requires-python:>=3.8) 2025-06-11T13:11:34,408 Found link https://files.pythonhosted.org/packages/7b/36/864900a4d40ab7048f9a2b96fe3ccb11cd2c0b4cfa0e06a29e780f787ae1/genomad-1.5.2.tar.gz (from https://pypi.org/simple/genomad/) (requires-python:>=3.8), version: 1.5.2 2025-06-11T13:11:34,408 Skipping link: No binaries permitted for genomad: https://files.pythonhosted.org/packages/89/21/2583072017f815eed79ea05eba09ccf73069f99e2b60c48a36c7f266ff2d/genomad-1.6.0-py3-none-any.whl (from https://pypi.org/simple/genomad/) (requires-python:>=3.8) 2025-06-11T13:11:34,409 Found link https://files.pythonhosted.org/packages/4b/b5/b4400b94f9f488a0d4b89368e8d8d4ed478a51f0fb3d309d8f9c2282e29e/genomad-1.6.0.tar.gz (from https://pypi.org/simple/genomad/) (requires-python:>=3.8), version: 1.6.0 2025-06-11T13:11:34,410 Skipping link: No binaries permitted for genomad: https://files.pythonhosted.org/packages/5e/15/c17c253bc915f0877aecf7c184adfb1667d4accfca9c03a55147de3041ef/genomad-1.6.1-py3-none-any.whl (from https://pypi.org/simple/genomad/) (requires-python:>=3.8) 2025-06-11T13:11:34,410 Found link https://files.pythonhosted.org/packages/69/10/295fe42c70fb2bacf41368222beb5849a7b003ecdda33451fc76fc75ea5c/genomad-1.6.1.tar.gz (from https://pypi.org/simple/genomad/) (requires-python:>=3.8), version: 1.6.1 2025-06-11T13:11:34,411 Skipping link: No binaries permitted for genomad: https://files.pythonhosted.org/packages/be/c8/5a38a1336262787b74c0d3abb36166c4c27a981c30271b9fd42892fb673a/genomad-1.7.0-py3-none-any.whl (from https://pypi.org/simple/genomad/) (requires-python:>=3.8) 2025-06-11T13:11:34,412 Found link https://files.pythonhosted.org/packages/4d/fe/d53b7be8ced3174480f2fe71b3c53312cf169614af9ef6acf124a212a313/genomad-1.7.0.tar.gz (from https://pypi.org/simple/genomad/) (requires-python:>=3.8), version: 1.7.0 2025-06-11T13:11:34,413 Skipping link: No binaries permitted for genomad: https://files.pythonhosted.org/packages/8e/8b/e8254474084c68856f4f781158a6dcb27c6dc899cf0fd078ee0108d06710/genomad-1.7.1-py3-none-any.whl (from https://pypi.org/simple/genomad/) (requires-python:>=3.8) 2025-06-11T13:11:34,413 Found link https://files.pythonhosted.org/packages/39/3b/7cc57b883fc2095bc434bcef2c5413b35248d8fb0f68512dadd63bcb6ac9/genomad-1.7.1.tar.gz (from https://pypi.org/simple/genomad/) (requires-python:>=3.8), version: 1.7.1 2025-06-11T13:11:34,414 Skipping link: No binaries permitted for genomad: https://files.pythonhosted.org/packages/eb/51/081f3368629ec814e772dc9f9b7c4178c99cbd3b19ee2d6f4e149b281b62/genomad-1.7.2-py3-none-any.whl (from https://pypi.org/simple/genomad/) (requires-python:>=3.8) 2025-06-11T13:11:34,414 Found link https://files.pythonhosted.org/packages/61/e5/2124993d787c0ffab7e95ec36072c22cdd7838feeda5283e131b3e651ee9/genomad-1.7.2.tar.gz (from https://pypi.org/simple/genomad/) (requires-python:>=3.8), version: 1.7.2 2025-06-11T13:11:34,415 Skipping link: No binaries permitted for genomad: https://files.pythonhosted.org/packages/6d/13/d945f06eae01e4617ac853ef1079c22e88faa1104228cea1b14abede2e22/genomad-1.7.3-py3-none-any.whl (from https://pypi.org/simple/genomad/) (requires-python:>=3.8) 2025-06-11T13:11:34,415 Found link https://files.pythonhosted.org/packages/a4/1b/c78e7b470d3dc146b632fc98067b53a9cdd7168ec6dae66a658cd3c606ae/genomad-1.7.3.tar.gz (from https://pypi.org/simple/genomad/) (requires-python:>=3.8), version: 1.7.3 2025-06-11T13:11:34,416 Skipping link: No binaries permitted for genomad: https://files.pythonhosted.org/packages/f6/1c/ef655ba23bbe8973677392556e20018125515b3862185448a50cdd376af1/genomad-1.7.4-py3-none-any.whl (from https://pypi.org/simple/genomad/) (requires-python:>=3.8) 2025-06-11T13:11:34,416 Found link https://files.pythonhosted.org/packages/eb/44/4ed03e66972d344834742a63fbb22638bd15e00ef6f348489f77a545a93c/genomad-1.7.4.tar.gz (from https://pypi.org/simple/genomad/) (requires-python:>=3.8), version: 1.7.4 2025-06-11T13:11:34,417 Skipping link: No binaries permitted for genomad: https://files.pythonhosted.org/packages/7b/2f/e42dab15b6d591b73cdc70e12149769c2119cf3c05e912728f6e6a96c9d6/genomad-1.7.5-py3-none-any.whl (from https://pypi.org/simple/genomad/) (requires-python:>=3.8) 2025-06-11T13:11:34,418 Found link https://files.pythonhosted.org/packages/b0/5a/8dfa2cd6f995371e82201c5da3d5407d8c4d004dae13a1a5c700605368db/genomad-1.7.5.tar.gz (from https://pypi.org/simple/genomad/) (requires-python:>=3.8), version: 1.7.5 2025-06-11T13:11:34,418 Skipping link: No binaries permitted for genomad: https://files.pythonhosted.org/packages/ef/ad/7e3139a05314313b19be71d20845f246da3886f7ee263f5bd9390f7a0932/genomad-1.7.6-py3-none-any.whl (from https://pypi.org/simple/genomad/) (requires-python:>=3.8) 2025-06-11T13:11:34,419 Found link https://files.pythonhosted.org/packages/5d/4b/f4d2e6875f0930a1bd061ed018ed0d857fe96baef91ec363a8adb5479b45/genomad-1.7.6.tar.gz (from https://pypi.org/simple/genomad/) (requires-python:>=3.8), version: 1.7.6 2025-06-11T13:11:34,420 Skipping link: No binaries permitted for genomad: https://files.pythonhosted.org/packages/19/aa/644c0f6b34e9562ac181502b8c629cb6a4659176373b317d439f113fefd1/genomad-1.8.0-py3-none-any.whl (from https://pypi.org/simple/genomad/) (requires-python:>=3.8) 2025-06-11T13:11:34,420 Found link https://files.pythonhosted.org/packages/2e/aa/aa41f8fc51683e22a97f2a57c60baccc7cd7bc4c55a5bdc8a83e03b8b489/genomad-1.8.0.tar.gz (from https://pypi.org/simple/genomad/) (requires-python:>=3.8), version: 1.8.0 2025-06-11T13:11:34,421 Skipping link: No binaries permitted for genomad: https://files.pythonhosted.org/packages/a5/20/dcde3192915acf8c230753b47f5c3c42ed018b95f42d56e0ab4dc27e3e32/genomad-1.8.1-py3-none-any.whl (from https://pypi.org/simple/genomad/) (requires-python:>=3.8) 2025-06-11T13:11:34,422 Found link https://files.pythonhosted.org/packages/8e/8e/1a8c5df1ff6b60531eec8263454ac54b35ee975d0bed4b60c4344841ff8e/genomad-1.8.1.tar.gz (from https://pypi.org/simple/genomad/) (requires-python:>=3.8), version: 1.8.1 2025-06-11T13:11:34,422 Skipping link: No binaries permitted for genomad: https://files.pythonhosted.org/packages/f0/23/247e662b729e82fda0ba3af7a9d6ba628917e7b60bd49f2cbaaff44e129d/genomad-1.9.0-py3-none-any.whl (from https://pypi.org/simple/genomad/) (requires-python:>=3.8) 2025-06-11T13:11:34,423 Found link https://files.pythonhosted.org/packages/41/1b/127d9cfe78b5ea0e864e2151fb125ec7bd60748e23e5378dcf7f57b92deb/genomad-1.9.0.tar.gz (from https://pypi.org/simple/genomad/) (requires-python:>=3.8), version: 1.9.0 2025-06-11T13:11:34,423 Skipping link: No binaries permitted for genomad: https://files.pythonhosted.org/packages/6f/e6/9604cf2534f8754253c8b8d97b07158d2715906326d505465ba0ddddaf9f/genomad-1.10.0-py3-none-any.whl (from https://pypi.org/simple/genomad/) (requires-python:>=3.9) 2025-06-11T13:11:34,424 Found link https://files.pythonhosted.org/packages/72/f1/f8b7d3c9bf0f63dcfe26aae40ccc482c49a6304b5af11cb4ee7445717b1b/genomad-1.10.0.tar.gz (from https://pypi.org/simple/genomad/) (requires-python:>=3.9), version: 1.10.0 2025-06-11T13:11:34,425 Skipping link: No binaries permitted for genomad: https://files.pythonhosted.org/packages/97/03/c69998ec3843bc1900a0011fed97ca71300adea087465e750448ac65dbbd/genomad-1.11.0-py3-none-any.whl (from https://pypi.org/simple/genomad/) (requires-python:>=3.9) 2025-06-11T13:11:34,425 Found link https://files.pythonhosted.org/packages/bd/f6/1a199a36c97fdc139158a10e07045e15de39d66153ab57bc22d096ca1690/genomad-1.11.0.tar.gz (from https://pypi.org/simple/genomad/) (requires-python:>=3.9), version: 1.11.0 2025-06-11T13:11:34,426 Skipping link: No binaries permitted for genomad: https://files.pythonhosted.org/packages/8f/fb/c38d47a0576ef294d82a561e899e706c0e485d09c13a651c29efcdce99c4/genomad-1.11.1-py3-none-any.whl (from https://pypi.org/simple/genomad/) (requires-python:>=3.9) 2025-06-11T13:11:34,426 Found link https://files.pythonhosted.org/packages/3d/5b/093e4f1a661189ca5cddd7e69704c887ed2ec33e94284d83970fea35750c/genomad-1.11.1.tar.gz (from https://pypi.org/simple/genomad/) (requires-python:>=3.9), version: 1.11.1 2025-06-11T13:11:34,427 Fetching project page and analyzing links: https://www.piwheels.org/simple/genomad/ 2025-06-11T13:11:34,428 Getting page https://www.piwheels.org/simple/genomad/ 2025-06-11T13:11:34,429 Found index url https://www.piwheels.org/simple/ 2025-06-11T13:11:34,585 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/genomad/ 2025-06-11T13:11:35,244 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/genomad/ 2025-06-11T13:11:36,398 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/genomad/ 2025-06-11T13:11:38,554 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/genomad/ 2025-06-11T13:11:42,716 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/genomad/ 2025-06-11T13:11:42,877 Could not fetch URL https://www.piwheels.org/simple/genomad/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/genomad/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping 2025-06-11T13:11:42,878 Skipping link: not a file: https://www.piwheels.org/simple/genomad/ 2025-06-11T13:11:42,879 Skipping link: not a file: https://pypi.org/simple/genomad/ 2025-06-11T13:11:42,899 Given no hashes to check 1 links for project 'genomad': discarding no candidates 2025-06-11T13:11:42,901 Collecting genomad==1.11.1 2025-06-11T13:11:42,903 Created temporary directory: /tmp/pip-unpack-uottxikc 2025-06-11T13:11:43,140 Downloading genomad-1.11.1.tar.gz (28.3 MB) 2025-06-11T13:11:48,618 Added genomad==1.11.1 from https://files.pythonhosted.org/packages/3d/5b/093e4f1a661189ca5cddd7e69704c887ed2ec33e94284d83970fea35750c/genomad-1.11.1.tar.gz to build tracker '/tmp/pip-build-tracker-2ms77dr1' 2025-06-11T13:11:48,621 Created temporary directory: /tmp/pip-build-env-a1r7nfwb 2025-06-11T13:11:48,626 Installing build dependencies: started 2025-06-11T13:11:48,627 Running command pip subprocess to install build dependencies 2025-06-11T13:11:49,803 Using pip 25.2 from /usr/local/lib/python3.11/dist-packages/pip (python 3.11) 2025-06-11T13:11:49,804 Non-user install by explicit request 2025-06-11T13:11:50,248 Created build tracker: /tmp/pip-build-tracker-2ms77dr1 2025-06-11T13:11:50,249 Entered build tracker: /tmp/pip-build-tracker-2ms77dr1 2025-06-11T13:11:50,252 Created temporary directory: /tmp/pip-install-8yc1bteo 2025-06-11T13:11:50,257 Created temporary directory: /tmp/pip-ephem-wheel-cache-8hy4f4wf 2025-06-11T13:11:50,306 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-06-11T13:11:50,308 2 location(s) to search for versions of flit-core: 2025-06-11T13:11:50,309 * https://pypi.org/simple/flit-core/ 2025-06-11T13:11:50,309 * https://www.piwheels.org/simple/flit-core/ 2025-06-11T13:11:50,310 Fetching project page and analyzing links: https://pypi.org/simple/flit-core/ 2025-06-11T13:11:50,311 Getting page https://pypi.org/simple/flit-core/ 2025-06-11T13:11:50,312 Found index url https://pypi.org/simple/ 2025-06-11T13:11:50,315 Looking up "https://pypi.org/simple/flit-core/" in the cache 2025-06-11T13:11:50,316 Request header has "max_age" as 0, cache bypassed 2025-06-11T13:11:50,321 Starting new HTTPS connection (1): pypi.org:443 2025-06-11T13:11:50,479 https://pypi.org:443 "GET /simple/flit-core/ HTTP/1.1" 304 0 2025-06-11T13:11:50,487 Fetched page https://pypi.org/simple/flit-core/ as application/vnd.pypi.simple.v1+json 2025-06-11T13:11:50,512 Found link https://files.pythonhosted.org/packages/12/4f/8a0a7b2033b8a80451d214a289aecf486afdfb8e155b25986b0cbd3eb6e8/flit_core-2.0rc1-py2.py3-none-any.whl (from https://pypi.org/simple/flit-core/) (requires-python:>=2.7, !=3.0, !=3.1, !=3.2, != 3.3), version: 2.0rc1 2025-06-11T13:11:50,513 Found link https://files.pythonhosted.org/packages/7f/8c/583b4412da71153ec70ed78341983c242a234d47abcfc8485284c6bb7b48/flit_core-2.0rc1.tar.gz (from https://pypi.org/simple/flit-core/) (requires-python:>=2.7, !=3.0, !=3.1, !=3.2, != 3.3), version: 2.0rc1 2025-06-11T13:11:50,514 Found link https://files.pythonhosted.org/packages/d0/72/0fe258ce61fa1b59adb6c76a701b19a96e0033fbe054b297a2012e33ad44/flit_core-2.0rc2-py2.py3-none-any.whl (from https://pypi.org/simple/flit-core/) (requires-python:>=2.7, !=3.0, !=3.1, !=3.2, != 3.3), version: 2.0rc2 2025-06-11T13:11:50,515 Found link https://files.pythonhosted.org/packages/2f/1b/41ac0da91712d9c3e7d06a6e1eb7dfe616c96a14e4036e9b9c37ea9ee6f8/flit_core-2.0rc2.tar.gz (from https://pypi.org/simple/flit-core/) (requires-python:>=2.7, !=3.0, !=3.1, !=3.2, != 3.3), version: 2.0rc2 2025-06-11T13:11:50,517 Found link https://files.pythonhosted.org/packages/6a/ff/be83d749ff1ad481b09e1e6069178c2d5d6c56a10b493353f0cc405e8475/flit_core-2.0rc3-py2.py3-none-any.whl (from https://pypi.org/simple/flit-core/) (requires-python:>=2.7, !=3.0, !=3.1, !=3.2, != 3.3), version: 2.0rc3 2025-06-11T13:11:50,518 Found link https://files.pythonhosted.org/packages/2d/36/bcd4bfb529261a27f113eb2e6fb9f5e5aed4d0b79be59a76ce65689a1892/flit_core-2.0rc3.tar.gz (from https://pypi.org/simple/flit-core/) (requires-python:>=2.7, !=3.0, !=3.1, !=3.2, != 3.3), version: 2.0rc3 2025-06-11T13:11:50,519 Found link https://files.pythonhosted.org/packages/dc/81/1f336b50c81e5345aafe7469e4f4c1104faa82b76e6e9885456b47d898fe/flit_core-2.0-py2.py3-none-any.whl (from https://pypi.org/simple/flit-core/) (requires-python:>=2.7, !=3.0, !=3.1, !=3.2, != 3.3), version: 2.0 2025-06-11T13:11:50,520 Found link https://files.pythonhosted.org/packages/ec/cc/60e05480a5bf4b44ee1dbd179ca715ca4d192597d054e8c97bc0403060e8/flit_core-2.0.tar.gz (from https://pypi.org/simple/flit-core/) (requires-python:>=2.7, !=3.0, !=3.1, !=3.2, != 3.3), version: 2.0 2025-06-11T13:11:50,521 Found link https://files.pythonhosted.org/packages/36/6a/b0e5ba2ad9d801887c8df7095535635292ce9b97f63cbb86f2b4d96dfebf/flit_core-2.0.1-py2.py3-none-any.whl (from https://pypi.org/simple/flit-core/) (requires-python:>=2.7, !=3.0, !=3.1, !=3.2, != 3.3), version: 2.0.1 2025-06-11T13:11:50,522 Found link https://files.pythonhosted.org/packages/0e/3d/e9b28cd1d220ca635234e37567099bf4d50ea0a98a77b360b8d8042352e6/flit_core-2.0.1.tar.gz (from https://pypi.org/simple/flit-core/) (requires-python:>=2.7, !=3.0, !=3.1, !=3.2, != 3.3), version: 2.0.1 2025-06-11T13:11:50,523 Found link https://files.pythonhosted.org/packages/66/d2/c520657053052af580573e32aeafe50a9f68fc77c5d87ff551ca856d2aa3/flit_core-2.0.2-py2.py3-none-any.whl (from https://pypi.org/simple/flit-core/) (requires-python:>=2.7, !=3.0, !=3.1, !=3.2, != 3.3), version: 2.0.2 2025-06-11T13:11:50,523 Found link https://files.pythonhosted.org/packages/89/cf/a76f37dfded167e97936b8d53308abe5a8d00b97d417a6a405e69167e685/flit_core-2.0.2.tar.gz (from https://pypi.org/simple/flit-core/) (requires-python:>=2.7, !=3.0, !=3.1, !=3.2, != 3.3), version: 2.0.2 2025-06-11T13:11:50,525 Found link https://files.pythonhosted.org/packages/b6/b0/50719ef7d12cd39ccfa4e48abb593764c8e4a6d0d9bdf7815be1949142ff/flit_core-2.1.0-py2.py3-none-any.whl (from https://pypi.org/simple/flit-core/) (requires-python:>=2.7, !=3.0, !=3.1, !=3.2, != 3.3), version: 2.1.0 2025-06-11T13:11:50,525 Found link https://files.pythonhosted.org/packages/6c/6a/f945cf72957752ba0655260a8cb9c1139ea134c5f4b104bc48027349a6f4/flit_core-2.1.0.tar.gz (from https://pypi.org/simple/flit-core/) (requires-python:>=2.7, !=3.0, !=3.1, !=3.2, != 3.3), version: 2.1.0 2025-06-11T13:11:50,527 Found link https://files.pythonhosted.org/packages/25/4c/0b1ed660937d96ed192c376d3983dd7b052b887c8041ae020c950c0d06f0/flit_core-2.2.0-py2.py3-none-any.whl (from 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https://files.pythonhosted.org/packages/a8/66/67758f788959c2557c4d0f80e4895c3c0802873be95b82a5213ea39542d7/flit_core-3.0.0-py3-none-any.whl (from https://pypi.org/simple/flit-core/) (requires-python:>=3.4), version: 3.0.0 2025-06-11T13:11:50,532 Found link https://files.pythonhosted.org/packages/0e/b9/040baf94b40c80081bbecbd90365a5d7765a1c07e31b6c949838cc4c93d1/flit_core-3.0.0.tar.gz (from https://pypi.org/simple/flit-core/) (requires-python:>=3.4), version: 3.0.0 2025-06-11T13:11:50,533 Found link https://files.pythonhosted.org/packages/ed/0c/50352b127c0936cd59dd762db41d0e17986401c42ba613fa502e926d33ec/flit_core-3.1.0-py3-none-any.whl (from https://pypi.org/simple/flit-core/) (requires-python:>=3.4), version: 3.1.0 2025-06-11T13:11:50,534 Found link https://files.pythonhosted.org/packages/4c/8f/bed80c03f71cb3a2935882f391b53d2510c359191e5e0361650fa02d1365/flit_core-3.1.0.tar.gz (from https://pypi.org/simple/flit-core/) (requires-python:>=3.4), version: 3.1.0 2025-06-11T13:11:50,535 Found link https://files.pythonhosted.org/packages/67/f6/382ac797101385edb1908e1105121ac33f910cd06d126ac9ac1bd540a3b3/flit_core-3.2.0-py3-none-any.whl (from https://pypi.org/simple/flit-core/) (requires-python:>=3.4), version: 3.2.0 2025-06-11T13:11:50,536 Found link https://files.pythonhosted.org/packages/a7/06/700a2ae25c67bf3722c9b01788f43808ebc94b6a544b5008770e19406f6a/flit_core-3.2.0.tar.gz (from https://pypi.org/simple/flit-core/) (requires-python:>=3.4), version: 3.2.0 2025-06-11T13:11:50,537 Found link https://files.pythonhosted.org/packages/87/5e/b4d6334fd01716e08a76204ffd85031b640567b7548ac79f258f40eded6b/flit_core-3.3.0-py3-none-any.whl (from https://pypi.org/simple/flit-core/) (requires-python:>=3.4), version: 3.3.0 2025-06-11T13:11:50,538 Found link https://files.pythonhosted.org/packages/6f/cd/3653de7b1d61f0ef95f2459ac752f23a91dbc84f991787201aa52d0cf1cc/flit_core-3.3.0.tar.gz (from https://pypi.org/simple/flit-core/) (requires-python:>=3.4), version: 3.3.0 2025-06-11T13:11:50,539 Found link https://files.pythonhosted.org/packages/16/3a/4e107184bbaff2f84d37813bc31f5e0499afa7b1db23419dee95640fc076/flit_core-3.4.0-py3-none-any.whl (from https://pypi.org/simple/flit-core/) (requires-python:>=3.6), version: 3.4.0 2025-06-11T13:11:50,540 Found link https://files.pythonhosted.org/packages/2c/a9/64406cf5c1c31186e1208a290ff10a0add43882edaef5eeba49e15ba6e7f/flit_core-3.4.0.tar.gz (from https://pypi.org/simple/flit-core/) (requires-python:>=3.6), version: 3.4.0 2025-06-11T13:11:50,541 Found link https://files.pythonhosted.org/packages/16/d6/5db8ba55264d8cc61a101e04e6e329650874e046b102ed09970bb0502437/flit_core-3.5.0-py3-none-any.whl (from https://pypi.org/simple/flit-core/) (requires-python:>=3.6), version: 3.5.0 2025-06-11T13:11:50,542 Found link https://files.pythonhosted.org/packages/26/12/74c9b72b280006a97fb80268e6b84bf77c73837d93391c8238488c6f2dde/flit_core-3.5.0.tar.gz (from https://pypi.org/simple/flit-core/) (requires-python:>=3.6), 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(requires-python:>=3.6), version: 3.6.0 2025-06-11T13:11:50,547 Found link https://files.pythonhosted.org/packages/df/43/7a33eaead4ca25a163d951f43246a59af15eebc7511ad1e5b7cb470a2970/flit_core-3.7.0-py3-none-any.whl (from https://pypi.org/simple/flit-core/) (requires-python:>=3.6), version: 3.7.0 2025-06-11T13:11:50,548 Found link https://files.pythonhosted.org/packages/12/c8/ce203079be7deab7b4cdc1aaf20c95e15c584daec712cb55807e2ef1c7f1/flit_core-3.7.0.tar.gz (from https://pypi.org/simple/flit-core/) (requires-python:>=3.6), version: 3.7.0 2025-06-11T13:11:50,549 Found link https://files.pythonhosted.org/packages/ad/38/80992c4cb490a05474c886850ec818276d09c0a6722bd5b43bc487818ac7/flit_core-3.7.1-py3-none-any.whl (from https://pypi.org/simple/flit-core/) (requires-python:>=3.6), version: 3.7.1 2025-06-11T13:11:50,550 Found link https://files.pythonhosted.org/packages/15/d1/d8798b83e953fd6f86ca9b50f93eec464a9305b0661469c8234e61095481/flit_core-3.7.1.tar.gz (from https://pypi.org/simple/flit-core/) (requires-python:>=3.6), version: 3.7.1 2025-06-11T13:11:50,551 Found link https://files.pythonhosted.org/packages/04/ac/f91a0219e0d4162762f218e4876bf328f16e4d283e691cd7f42a02b22634/flit_core-3.8.0-py3-none-any.whl (from https://pypi.org/simple/flit-core/) (requires-python:>=3.6), version: 3.8.0 2025-06-11T13:11:50,552 Found link https://files.pythonhosted.org/packages/10/e5/be08751d07b30889af130cec20955c987a74380a10058e6e8856e4010afc/flit_core-3.8.0.tar.gz (from https://pypi.org/simple/flit-core/) (requires-python:>=3.6), version: 3.8.0 2025-06-11T13:11:50,553 Found link https://files.pythonhosted.org/packages/38/45/618e84e49a6c51e5dd15565ec2fcd82ab273434f236b8f108f065ded517a/flit_core-3.9.0-py3-none-any.whl (from https://pypi.org/simple/flit-core/) (requires-python:>=3.6), version: 3.9.0 2025-06-11T13:11:50,554 Found link https://files.pythonhosted.org/packages/c4/e6/c1ac50fe3eebb38a155155711e6e864e254ce4b6e17fe2429b4c4d5b9e80/flit_core-3.9.0.tar.gz (from https://pypi.org/simple/flit-core/) (requires-python:>=3.6), version: 3.9.0 2025-06-11T13:11:50,555 Found link https://files.pythonhosted.org/packages/f0/c2/b12a6663a2fbac4c699d5a3cce58591d44bf199b91daec288de087a07ffc/flit_core-3.10.0-py3-none-any.whl (from https://pypi.org/simple/flit-core/) (requires-python:>=3.6), version: 3.10.0 2025-06-11T13:11:50,555 Found link https://files.pythonhosted.org/packages/52/92/89cceb9c49f3e6c72091304636c5ebc2fc48c546742bbf8a6a474e48e666/flit_core-3.10.0.tar.gz (from https://pypi.org/simple/flit-core/) (requires-python:>=3.6), version: 3.10.0 2025-06-11T13:11:50,556 Found link https://files.pythonhosted.org/packages/be/2d/293fe6a58e73df57cc2b5e5cf2b17c6bb4fb5b0c390bab8f1e87bdc62529/flit_core-3.10.1-py3-none-any.whl (from https://pypi.org/simple/flit-core/) (requires-python:>=3.6), version: 3.10.1 2025-06-11T13:11:50,557 Found link https://files.pythonhosted.org/packages/d5/ae/09427bea9227a33ec834ed5461432752fd5d02b14f93dd68406c91684622/flit_core-3.10.1.tar.gz (from https://pypi.org/simple/flit-core/) (requires-python:>=3.6), version: 3.10.1 2025-06-11T13:11:50,558 Found link https://files.pythonhosted.org/packages/b5/0c/039f1ec352977330a372c783adcbc5c3773868fa71cb00bb7db7b428e76a/flit_core-3.11.0-py3-none-any.whl (from https://pypi.org/simple/flit-core/) (requires-python:>=3.6), version: 3.11.0 2025-06-11T13:11:50,559 Found link https://files.pythonhosted.org/packages/bc/18/b9b81cab2b8f63e6e7f72e1ba2766a0454fcd563e7a77b8299cb917ba805/flit_core-3.11.0.tar.gz (from https://pypi.org/simple/flit-core/) (requires-python:>=3.6), version: 3.11.0 2025-06-11T13:11:50,560 Found link https://files.pythonhosted.org/packages/f2/65/b6ba90634c984a4fcc02c7e3afe523fef500c4980fec67cc27536ee50acf/flit_core-3.12.0-py3-none-any.whl (from https://pypi.org/simple/flit-core/) (requires-python:>=3.6), version: 3.12.0 2025-06-11T13:11:50,561 Found link https://files.pythonhosted.org/packages/69/59/b6fc2188dfc7ea4f936cd12b49d707f66a1cb7a1d2c16172963534db741b/flit_core-3.12.0.tar.gz (from https://pypi.org/simple/flit-core/) (requires-python:>=3.6), version: 3.12.0 2025-06-11T13:11:50,562 Fetching project page and analyzing links: https://www.piwheels.org/simple/flit-core/ 2025-06-11T13:11:50,563 Getting page https://www.piwheels.org/simple/flit-core/ 2025-06-11T13:11:50,565 Found index url https://www.piwheels.org/simple/ 2025-06-11T13:11:50,566 Looking up "https://www.piwheels.org/simple/flit-core/" in the cache 2025-06-11T13:11:50,567 Request header has "max_age" as 0, cache bypassed 2025-06-11T13:11:50,568 No cache entry available 2025-06-11T13:11:50,569 Starting new HTTPS connection (1): www.piwheels.org:443 2025-06-11T13:11:50,726 Incremented Retry for (url='/simple/flit-core/'): Retry(total=4, connect=None, read=None, redirect=None, status=None) 2025-06-11T13:11:50,727 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/flit-core/ 2025-06-11T13:11:50,728 Starting new HTTPS connection (2): www.piwheels.org:443 2025-06-11T13:11:50,890 Incremented Retry for (url='/simple/flit-core/'): Retry(total=3, connect=None, read=None, redirect=None, status=None) 2025-06-11T13:11:51,391 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/flit-core/ 2025-06-11T13:11:51,392 Starting new HTTPS connection (3): www.piwheels.org:443 2025-06-11T13:11:51,549 Incremented Retry for (url='/simple/flit-core/'): Retry(total=2, connect=None, read=None, redirect=None, status=None) 2025-06-11T13:11:52,550 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/flit-core/ 2025-06-11T13:11:52,551 Starting new HTTPS connection (4): www.piwheels.org:443 2025-06-11T13:11:52,709 Incremented Retry for (url='/simple/flit-core/'): Retry(total=1, connect=None, read=None, redirect=None, status=None) 2025-06-11T13:11:54,710 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/flit-core/ 2025-06-11T13:11:54,711 Starting new HTTPS connection (5): www.piwheels.org:443 2025-06-11T13:11:54,873 Incremented Retry for (url='/simple/flit-core/'): Retry(total=0, connect=None, read=None, redirect=None, status=None) 2025-06-11T13:11:58,874 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/flit-core/ 2025-06-11T13:11:58,875 Starting new HTTPS connection (6): www.piwheels.org:443 2025-06-11T13:11:59,032 Could not fetch URL https://www.piwheels.org/simple/flit-core/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/flit-core/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping 2025-06-11T13:11:59,033 Skipping link: not a file: https://www.piwheels.org/simple/flit-core/ 2025-06-11T13:11:59,034 Skipping link: not a file: https://pypi.org/simple/flit-core/ 2025-06-11T13:11:59,044 Given no hashes to check 28 links for project 'flit-core': discarding no candidates 2025-06-11T13:11:59,050 Collecting flit_core<4,>=3.2 2025-06-11T13:11:59,051 Obtaining dependency information for flit_core<4,>=3.2 from https://files.pythonhosted.org/packages/f2/65/b6ba90634c984a4fcc02c7e3afe523fef500c4980fec67cc27536ee50acf/flit_core-3.12.0-py3-none-any.whl.metadata 2025-06-11T13:11:59,053 Created temporary directory: /tmp/pip-unpack-a4qc5595 2025-06-11T13:11:59,055 Looking up "https://files.pythonhosted.org/packages/f2/65/b6ba90634c984a4fcc02c7e3afe523fef500c4980fec67cc27536ee50acf/flit_core-3.12.0-py3-none-any.whl.metadata" in the cache 2025-06-11T13:11:59,059 Current age based on date: 0 2025-06-11T13:11:59,060 Ignoring unknown cache-control directive: immutable 2025-06-11T13:11:59,060 Freshness lifetime from max-age: 365000000 2025-06-11T13:11:59,061 The response is "fresh", returning cached response 2025-06-11T13:11:59,062 365000000 > 0 2025-06-11T13:11:59,063 Using cached flit_core-3.12.0-py3-none-any.whl.metadata (888 bytes) 2025-06-11T13:11:59,066 Created temporary directory: /tmp/pip-metadata-if51vm1p 2025-06-11T13:11:59,074 Created temporary directory: /tmp/pip-unpack-m44y51di 2025-06-11T13:11:59,077 Looking up "https://files.pythonhosted.org/packages/f2/65/b6ba90634c984a4fcc02c7e3afe523fef500c4980fec67cc27536ee50acf/flit_core-3.12.0-py3-none-any.whl" in the cache 2025-06-11T13:11:59,080 Current age based on date: 0 2025-06-11T13:11:59,081 Ignoring unknown cache-control directive: immutable 2025-06-11T13:11:59,081 Freshness lifetime from max-age: 365000000 2025-06-11T13:11:59,082 The response is "fresh", returning cached response 2025-06-11T13:11:59,083 365000000 > 0 2025-06-11T13:11:59,085 Using cached flit_core-3.12.0-py3-none-any.whl (45 kB) 2025-06-11T13:11:59,087 Downloading link https://files.pythonhosted.org/packages/f2/65/b6ba90634c984a4fcc02c7e3afe523fef500c4980fec67cc27536ee50acf/flit_core-3.12.0-py3-none-any.whl (from https://pypi.org/simple/flit-core/) (requires-python:>=3.6) to /tmp/pip-unpack-m44y51di/flit_core-3.12.0-py3-none-any.whl 2025-06-11T13:11:59,705 Installing collected packages: flit_core 2025-06-11T13:11:59,764 Successfully installed flit_core-3.12.0 2025-06-11T13:11:59,765 Removed build tracker: '/tmp/pip-build-tracker-2ms77dr1' 2025-06-11T13:11:59,965 Installing build dependencies: finished with status 'done' 2025-06-11T13:11:59,969 Getting requirements to build wheel: started 2025-06-11T13:11:59,970 Running command Getting requirements to build wheel 2025-06-11T13:12:00,415 Getting requirements to build wheel: finished with status 'done' 2025-06-11T13:12:00,418 Created temporary directory: /tmp/pip-modern-metadata-y32b3svw 2025-06-11T13:12:00,420 Preparing metadata (pyproject.toml): started 2025-06-11T13:12:00,422 Running command Preparing metadata (pyproject.toml) 2025-06-11T13:12:00,794 Preparing metadata (pyproject.toml): finished with status 'done' 2025-06-11T13:12:00,799 Source in /tmp/pip-wheel-9slawtly/genomad_d96a8b72510c44afa0e7c77ca22c802b has version 1.11.1, which satisfies requirement genomad==1.11.1 from https://files.pythonhosted.org/packages/3d/5b/093e4f1a661189ca5cddd7e69704c887ed2ec33e94284d83970fea35750c/genomad-1.11.1.tar.gz 2025-06-11T13:12:00,801 Removed genomad==1.11.1 from https://files.pythonhosted.org/packages/3d/5b/093e4f1a661189ca5cddd7e69704c887ed2ec33e94284d83970fea35750c/genomad-1.11.1.tar.gz from build tracker '/tmp/pip-build-tracker-2ms77dr1' 2025-06-11T13:12:00,808 Created temporary directory: /tmp/pip-unpack-zkernjt9 2025-06-11T13:12:00,809 Created temporary directory: /tmp/pip-unpack-uyhoco_x 2025-06-11T13:12:00,810 Building wheels for collected packages: genomad 2025-06-11T13:12:00,814 Created temporary directory: /tmp/pip-wheel-e9qi5avg 2025-06-11T13:12:00,815 Destination directory: /tmp/pip-wheel-e9qi5avg 2025-06-11T13:12:00,817 Building wheel for genomad (pyproject.toml): started 2025-06-11T13:12:00,818 Running command Building wheel for genomad (pyproject.toml) 2025-06-11T13:12:12,512 Building wheel for genomad (pyproject.toml): finished with status 'done' 2025-06-11T13:12:13,729 Created wheel for genomad: filename=genomad-1.11.1-py3-none-any.whl size=53219313 sha256=b68160a90bb5505d5410c99a6bba832e6ebdd206bb5df81de04627b6dfa2fc41 2025-06-11T13:12:13,730 Stored in directory: /tmp/pip-ephem-wheel-cache-9lnbq9au/wheels/68/5b/4e/1129c3f45da38df1f7d0d51eceac5d61c189de92d77efc7e71 2025-06-11T13:12:13,763 Successfully built genomad 2025-06-11T13:12:15,157 Removed build tracker: '/tmp/pip-build-tracker-2ms77dr1'