2025-06-12T04:55:47,072 Created temporary directory: /tmp/pip-build-tracker-os743dck
2025-06-12T04:55:47,073 Initialized build tracking at /tmp/pip-build-tracker-os743dck
2025-06-12T04:55:47,074 Created build tracker: /tmp/pip-build-tracker-os743dck
2025-06-12T04:55:47,074 Entered build tracker: /tmp/pip-build-tracker-os743dck
2025-06-12T04:55:47,075 Created temporary directory: /tmp/pip-wheel-0nqdiwe0
2025-06-12T04:55:47,079 Created temporary directory: /tmp/pip-ephem-wheel-cache-0oo9lqjx
2025-06-12T04:55:47,132 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-06-12T04:55:47,134 2 location(s) to search for versions of mitywgs:
2025-06-12T04:55:47,134 * https://pypi.org/simple/mitywgs/
2025-06-12T04:55:47,134 * https://www.piwheels.org/simple/mitywgs/
2025-06-12T04:55:47,135 Fetching project page and analyzing links: https://pypi.org/simple/mitywgs/
2025-06-12T04:55:47,136 Getting page https://pypi.org/simple/mitywgs/
2025-06-12T04:55:47,138 Found index url https://pypi.org/simple/
2025-06-12T04:55:47,365 Fetched page https://pypi.org/simple/mitywgs/ as application/vnd.pypi.simple.v1+json
2025-06-12T04:55:47,368   Skipping link: No binaries permitted for mitywgs: https://files.pythonhosted.org/packages/95/5f/0fba9bf0dc8952226a3f354f63799ffc90c6316bd29655a65af24a4eb38a/mitywgs-0.1.0-py3-none-any.whl (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.3)
2025-06-12T04:55:47,369   Found link https://files.pythonhosted.org/packages/86/fc/4260dd9cae80420e003f605e31b54e73af7fb685625664d1ccf0435ac64e/mitywgs-0.1.0.tar.gz (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.3), version: 0.1.0
2025-06-12T04:55:47,370   Skipping link: No binaries permitted for mitywgs: https://files.pythonhosted.org/packages/4f/5e/b43206082ca61da3e83d9e5c1e143c3de55f32c04146c81a70281726522a/mitywgs-0.1.1-py3-none-any.whl (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.3)
2025-06-12T04:55:47,371   Found link https://files.pythonhosted.org/packages/9b/c5/77f664847f6788589008debb792b3c5436e4b496a030cb90e2062aaa1086/mitywgs-0.1.1.tar.gz (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.3), version: 0.1.1
2025-06-12T04:55:47,372   Skipping link: No binaries permitted for mitywgs: https://files.pythonhosted.org/packages/e5/b4/1512000bcbc0c4187fb9078309af272f45133fd51123b493a487b4712d3d/mitywgs-0.1.2-py3-none-any.whl (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.3)
2025-06-12T04:55:47,372   Found link https://files.pythonhosted.org/packages/9a/17/bd154ed0992c1dfe18326afd02587f9acc83c7f06d0d10c7b1953b4dbd26/mitywgs-0.1.2.tar.gz (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.3), version: 0.1.2
2025-06-12T04:55:47,373   Skipping link: No binaries permitted for mitywgs: https://files.pythonhosted.org/packages/40/b3/d2199c137c3893b5935b31a46b771ca9cb02e01ea169646a124bc8b19bde/mitywgs-0.1.3-py3-none-any.whl (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.3)
2025-06-12T04:55:47,374   Found link https://files.pythonhosted.org/packages/09/89/ec808bf6dd1fb7095eda564ef732a03d2146981fa599f862b3d0ed07a687/mitywgs-0.1.3.tar.gz (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.3), version: 0.1.3
2025-06-12T04:55:47,375   Skipping link: No binaries permitted for mitywgs: https://files.pythonhosted.org/packages/c7/ab/17446e81990597f0ede16c0426ba76037f02b440dc5d51a6b8dc9a208881/mitywgs-0.2.0-py3-none-any.whl (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.3)
2025-06-12T04:55:47,375   Found link https://files.pythonhosted.org/packages/c9/ab/7de2568d5ed11e067b0390fd31fa1d30eb099bce133b55cb0afed11c1986/mitywgs-0.2.0.tar.gz (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.3), version: 0.2.0
2025-06-12T04:55:47,376   Found link https://files.pythonhosted.org/packages/1d/42/c1c72c18c8e20c698dde0e058896655b177d48e46693afd5f25a4820a8d0/mitywgs-0.2.1.tar.gz (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.4), version: 0.2.1
2025-06-12T04:55:47,377   Skipping link: No binaries permitted for mitywgs: https://files.pythonhosted.org/packages/70/65/149da0fc3c6b39d585afe30be8e565acd57c30ab061098b91d24e4bf3b28/mitywgs-0.3.0-py3-none-any.whl (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.4)
2025-06-12T04:55:47,378   Found link https://files.pythonhosted.org/packages/85/f2/da170c825d1453e9c350e288bd19018b54d9df4dc1c1d1fcb7332bbc67d2/mitywgs-0.3.0.tar.gz (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.4), version: 0.3.0
2025-06-12T04:55:47,379   Skipping link: No binaries permitted for mitywgs: https://files.pythonhosted.org/packages/29/f0/3e335d7958a5d6d3dcf1dfba93594eec77bcf0aa9adde9d0978c0ff444bb/mitywgs-0.3.1-py3-none-any.whl (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.4)
2025-06-12T04:55:47,380   Found link https://files.pythonhosted.org/packages/93/a8/845e11c50e4bf8459685b1fe4a3123c2495d573056c3e56a17c6e84d35c5/mitywgs-0.3.1.tar.gz (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.4), version: 0.3.1
2025-06-12T04:55:47,380   Skipping link: No binaries permitted for mitywgs: https://files.pythonhosted.org/packages/1b/9e/ca91734f30aaf35c1b27ac388e8b333de771694b23c20559ab3c7469abe3/mitywgs-0.4.0-py3-none-any.whl (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.4)
2025-06-12T04:55:47,381   Found link https://files.pythonhosted.org/packages/11/3e/0afdf01d6c7065637962c87ace18a33bfdd4c33a0685f255459a73c29662/mitywgs-0.4.0.tar.gz (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.4), version: 0.4.0
2025-06-12T04:55:47,381   Found link https://files.pythonhosted.org/packages/27/00/b37d3d18ec330c45f5922187afc37eaa805a6182d8fa29954c29652068a7/mitywgs-1.0.0.tar.gz (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.4), version: 1.0.0
2025-06-12T04:55:47,382   Found link https://files.pythonhosted.org/packages/8b/07/911f1a30fcd360a0861a2f6bb887f87a39b2d4cb788123cfbc3856e7f4de/mitywgs-1.1.0.tar.gz (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.4), version: 1.1.0
2025-06-12T04:55:47,383   Found link https://files.pythonhosted.org/packages/d3/32/3e4a32faed6f5c80577d01b95ef993ec8ebe13d15b0328c172bd7fbc8f93/mitywgs-1.2.0.tar.gz (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.10), version: 1.2.0
2025-06-12T04:55:47,384   Found link https://files.pythonhosted.org/packages/58/56/3c4d991974d5cae481f5cd6d4885b42538545ecbd1a2038d0fd10b69c153/mitywgs-2.0.0.tar.gz (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.10), version: 2.0.0
2025-06-12T04:55:47,385 Fetching project page and analyzing links: https://www.piwheels.org/simple/mitywgs/
2025-06-12T04:55:47,386 Getting page https://www.piwheels.org/simple/mitywgs/
2025-06-12T04:55:47,387 Found index url https://www.piwheels.org/simple/
2025-06-12T04:55:47,548 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/mitywgs/
2025-06-12T04:55:48,207 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/mitywgs/
2025-06-12T04:55:49,374 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/mitywgs/
2025-06-12T04:55:51,530 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/mitywgs/
2025-06-12T04:55:55,688 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/mitywgs/
2025-06-12T04:55:55,848 Could not fetch URL https://www.piwheels.org/simple/mitywgs/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/mitywgs/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping
2025-06-12T04:55:55,849 Skipping link: not a file: https://www.piwheels.org/simple/mitywgs/
2025-06-12T04:55:55,850 Skipping link: not a file: https://pypi.org/simple/mitywgs/
2025-06-12T04:55:55,869 Given no hashes to check 1 links for project 'mitywgs': discarding no candidates
2025-06-12T04:55:55,871 Collecting mitywgs==1.2.0
2025-06-12T04:55:55,873   Created temporary directory: /tmp/pip-unpack-0wa1587i
2025-06-12T04:55:56,106   Downloading mitywgs-1.2.0.tar.gz (905 kB)
2025-06-12T04:55:56,443   Added mitywgs==1.2.0 from https://files.pythonhosted.org/packages/d3/32/3e4a32faed6f5c80577d01b95ef993ec8ebe13d15b0328c172bd7fbc8f93/mitywgs-1.2.0.tar.gz to build tracker '/tmp/pip-build-tracker-os743dck'
2025-06-12T04:55:56,445   Running setup.py (path:/tmp/pip-wheel-0nqdiwe0/mitywgs_3d3483ee826540439201e185d8a63c08/setup.py) egg_info for package mitywgs
2025-06-12T04:55:56,446   Created temporary directory: /tmp/pip-pip-egg-info-zmxim1qq
2025-06-12T04:55:56,447   Preparing metadata (setup.py): started
2025-06-12T04:55:56,448   Running command python setup.py egg_info
2025-06-12T04:55:57,331   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-06-12T04:55:57,331   !!

2025-06-12T04:55:57,333           ********************************************************************************
2025-06-12T04:55:57,333           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-06-12T04:55:57,335           License :: Free for non-commercial use

2025-06-12T04:55:57,336           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-06-12T04:55:57,337           ********************************************************************************

2025-06-12T04:55:57,338   !!
2025-06-12T04:55:57,338     self._finalize_license_expression()
2025-06-12T04:55:57,361   running egg_info
2025-06-12T04:55:57,389   creating /tmp/pip-pip-egg-info-zmxim1qq/mitywgs.egg-info
2025-06-12T04:55:57,390   writing /tmp/pip-pip-egg-info-zmxim1qq/mitywgs.egg-info/PKG-INFO
2025-06-12T04:55:57,394   writing dependency_links to /tmp/pip-pip-egg-info-zmxim1qq/mitywgs.egg-info/dependency_links.txt
2025-06-12T04:55:57,396   writing requirements to /tmp/pip-pip-egg-info-zmxim1qq/mitywgs.egg-info/requires.txt
2025-06-12T04:55:57,398   writing top-level names to /tmp/pip-pip-egg-info-zmxim1qq/mitywgs.egg-info/top_level.txt
2025-06-12T04:55:57,399   writing manifest file '/tmp/pip-pip-egg-info-zmxim1qq/mitywgs.egg-info/SOURCES.txt'
2025-06-12T04:55:57,524   reading manifest file '/tmp/pip-pip-egg-info-zmxim1qq/mitywgs.egg-info/SOURCES.txt'
2025-06-12T04:55:57,526   adding license file 'LICENSE.txt'
2025-06-12T04:55:57,530   writing manifest file '/tmp/pip-pip-egg-info-zmxim1qq/mitywgs.egg-info/SOURCES.txt'
2025-06-12T04:55:57,641   Preparing metadata (setup.py): finished with status 'done'
2025-06-12T04:55:57,646   Source in /tmp/pip-wheel-0nqdiwe0/mitywgs_3d3483ee826540439201e185d8a63c08 has version 1.2.0, which satisfies requirement mitywgs==1.2.0 from https://files.pythonhosted.org/packages/d3/32/3e4a32faed6f5c80577d01b95ef993ec8ebe13d15b0328c172bd7fbc8f93/mitywgs-1.2.0.tar.gz
2025-06-12T04:55:57,647   Removed mitywgs==1.2.0 from https://files.pythonhosted.org/packages/d3/32/3e4a32faed6f5c80577d01b95ef993ec8ebe13d15b0328c172bd7fbc8f93/mitywgs-1.2.0.tar.gz from build tracker '/tmp/pip-build-tracker-os743dck'
2025-06-12T04:55:57,655 Created temporary directory: /tmp/pip-unpack-ky3teh2o
2025-06-12T04:55:57,656 Created temporary directory: /tmp/pip-unpack-ntw8q1xg
2025-06-12T04:55:57,657 Building wheels for collected packages: mitywgs
2025-06-12T04:55:57,661   Created temporary directory: /tmp/pip-wheel-9jkkna6o
2025-06-12T04:55:57,662   DEPRECATION: Building 'mitywgs' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'mitywgs'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-06-12T04:55:57,663   Building wheel for mitywgs (setup.py): started
2025-06-12T04:55:57,664   Destination directory: /tmp/pip-wheel-9jkkna6o
2025-06-12T04:55:57,665   Running command python setup.py bdist_wheel
2025-06-12T04:55:58,524   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-06-12T04:55:58,524   !!

2025-06-12T04:55:58,525           ********************************************************************************
2025-06-12T04:55:58,525           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-06-12T04:55:58,526           License :: Free for non-commercial use

2025-06-12T04:55:58,527           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-06-12T04:55:58,528           ********************************************************************************

2025-06-12T04:55:58,529   !!
2025-06-12T04:55:58,530     self._finalize_license_expression()
2025-06-12T04:55:58,530   running bdist_wheel
2025-06-12T04:55:58,663   running build
2025-06-12T04:55:58,664   running build_py
2025-06-12T04:55:58,696   creating build/lib/mitylib
2025-06-12T04:55:58,698   copying mitylib/_version.py -> build/lib/mitylib
2025-06-12T04:55:58,700   copying mitylib/commands.py -> build/lib/mitylib
2025-06-12T04:55:58,703   copying mitylib/merge.py -> build/lib/mitylib
2025-06-12T04:55:58,705   copying mitylib/report.py -> build/lib/mitylib
2025-06-12T04:55:58,708   copying mitylib/__init__.py -> build/lib/mitylib
2025-06-12T04:55:58,710   copying mitylib/util.py -> build/lib/mitylib
2025-06-12T04:55:58,712   copying mitylib/normalise.py -> build/lib/mitylib
2025-06-12T04:55:58,715   copying mitylib/call.py -> build/lib/mitylib
2025-06-12T04:55:58,717   running egg_info
2025-06-12T04:55:58,746   writing mitywgs.egg-info/PKG-INFO
2025-06-12T04:55:58,749   writing dependency_links to mitywgs.egg-info/dependency_links.txt
2025-06-12T04:55:58,752   writing requirements to mitywgs.egg-info/requires.txt
2025-06-12T04:55:58,753   writing top-level names to mitywgs.egg-info/top_level.txt
2025-06-12T04:55:58,790   reading manifest file 'mitywgs.egg-info/SOURCES.txt'
2025-06-12T04:55:58,795   adding license file 'LICENSE.txt'
2025-06-12T04:55:58,800   writing manifest file 'mitywgs.egg-info/SOURCES.txt'
2025-06-12T04:55:58,802   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'mitylib.annot_chrm' is absent from the `packages` configuration.
2025-06-12T04:55:58,803   !!

2025-06-12T04:55:58,804           ********************************************************************************
2025-06-12T04:55:58,805           ############################
2025-06-12T04:55:58,805           # Package would be ignored #
2025-06-12T04:55:58,806           ############################
2025-06-12T04:55:58,807           Python recognizes 'mitylib.annot_chrm' as an importable package[^1],
2025-06-12T04:55:58,807           but it is absent from setuptools' `packages` configuration.

2025-06-12T04:55:58,809           This leads to an ambiguous overall configuration. If you want to distribute this
2025-06-12T04:55:58,809           package, please make sure that 'mitylib.annot_chrm' is explicitly added
2025-06-12T04:55:58,810           to the `packages` configuration field.

2025-06-12T04:55:58,811           Alternatively, you can also rely on setuptools' discovery methods
2025-06-12T04:55:58,812           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-06-12T04:55:58,812           instead of `find_packages(...)`/`find:`).

2025-06-12T04:55:58,813           You can read more about "package discovery" on setuptools documentation page:

2025-06-12T04:55:58,814           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-06-12T04:55:58,815           If you don't want 'mitylib.annot_chrm' to be distributed and are
2025-06-12T04:55:58,816           already explicitly excluding 'mitylib.annot_chrm' via
2025-06-12T04:55:58,816           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-06-12T04:55:58,817           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-06-12T04:55:58,817           combination with a more fine grained `package-data` configuration.

2025-06-12T04:55:58,818           You can read more about "package data files" on setuptools documentation page:

2025-06-12T04:55:58,819           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-06-12T04:55:58,821           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-06-12T04:55:58,821                 even if it does not contain any `.py` files.
2025-06-12T04:55:58,822                 On the other hand, currently there is no concept of package data
2025-06-12T04:55:58,822                 directory, all directories are treated like packages.
2025-06-12T04:55:58,824           ********************************************************************************

2025-06-12T04:55:58,825   !!
2025-06-12T04:55:58,826     check.warn(importable)
2025-06-12T04:55:58,826   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'mitylib.annot_mt' is absent from the `packages` configuration.
2025-06-12T04:55:58,827   !!

2025-06-12T04:55:58,828           ********************************************************************************
2025-06-12T04:55:58,829           ############################
2025-06-12T04:55:58,830           # Package would be ignored #
2025-06-12T04:55:58,831           ############################
2025-06-12T04:55:58,831           Python recognizes 'mitylib.annot_mt' as an importable package[^1],
2025-06-12T04:55:58,832           but it is absent from setuptools' `packages` configuration.

2025-06-12T04:55:58,833           This leads to an ambiguous overall configuration. If you want to distribute this
2025-06-12T04:55:58,834           package, please make sure that 'mitylib.annot_mt' is explicitly added
2025-06-12T04:55:58,834           to the `packages` configuration field.

2025-06-12T04:55:58,835           Alternatively, you can also rely on setuptools' discovery methods
2025-06-12T04:55:58,836           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-06-12T04:55:58,837           instead of `find_packages(...)`/`find:`).

2025-06-12T04:55:58,838           You can read more about "package discovery" on setuptools documentation page:

2025-06-12T04:55:58,839           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-06-12T04:55:58,840           If you don't want 'mitylib.annot_mt' to be distributed and are
2025-06-12T04:55:58,841           already explicitly excluding 'mitylib.annot_mt' via
2025-06-12T04:55:58,841           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-06-12T04:55:58,842           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-06-12T04:55:58,843           combination with a more fine grained `package-data` configuration.

2025-06-12T04:55:58,845           You can read more about "package data files" on setuptools documentation page:

2025-06-12T04:55:58,847           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-06-12T04:55:58,848           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-06-12T04:55:58,849                 even if it does not contain any `.py` files.
2025-06-12T04:55:58,849                 On the other hand, currently there is no concept of package data
2025-06-12T04:55:58,850                 directory, all directories are treated like packages.
2025-06-12T04:55:58,850           ********************************************************************************

2025-06-12T04:55:58,854   !!
2025-06-12T04:55:58,855     check.warn(importable)
2025-06-12T04:55:58,855   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'mitylib.config' is absent from the `packages` configuration.
2025-06-12T04:55:58,856   !!

2025-06-12T04:55:58,857           ********************************************************************************
2025-06-12T04:55:58,857           ############################
2025-06-12T04:55:58,858           # Package would be ignored #
2025-06-12T04:55:58,858           ############################
2025-06-12T04:55:58,859           Python recognizes 'mitylib.config' as an importable package[^1],
2025-06-12T04:55:58,860           but it is absent from setuptools' `packages` configuration.

2025-06-12T04:55:58,861           This leads to an ambiguous overall configuration. If you want to distribute this
2025-06-12T04:55:58,861           package, please make sure that 'mitylib.config' is explicitly added
2025-06-12T04:55:58,862           to the `packages` configuration field.

2025-06-12T04:55:58,863           Alternatively, you can also rely on setuptools' discovery methods
2025-06-12T04:55:58,864           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-06-12T04:55:58,864           instead of `find_packages(...)`/`find:`).

2025-06-12T04:55:58,865           You can read more about "package discovery" on setuptools documentation page:

2025-06-12T04:55:58,866           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-06-12T04:55:58,868           If you don't want 'mitylib.config' to be distributed and are
2025-06-12T04:55:58,868           already explicitly excluding 'mitylib.config' via
2025-06-12T04:55:58,869           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-06-12T04:55:58,869           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-06-12T04:55:58,870           combination with a more fine grained `package-data` configuration.

2025-06-12T04:55:58,871           You can read more about "package data files" on setuptools documentation page:

2025-06-12T04:55:58,873           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-06-12T04:55:58,875           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-06-12T04:55:58,876                 even if it does not contain any `.py` files.
2025-06-12T04:55:58,876                 On the other hand, currently there is no concept of package data
2025-06-12T04:55:58,877                 directory, all directories are treated like packages.
2025-06-12T04:55:58,877           ********************************************************************************

2025-06-12T04:55:58,879   !!
2025-06-12T04:55:58,880     check.warn(importable)
2025-06-12T04:55:58,880   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'mitylib.reference' is absent from the `packages` configuration.
2025-06-12T04:55:58,881   !!

2025-06-12T04:55:58,882           ********************************************************************************
2025-06-12T04:55:58,883           ############################
2025-06-12T04:55:58,883           # Package would be ignored #
2025-06-12T04:55:58,884           ############################
2025-06-12T04:55:58,885           Python recognizes 'mitylib.reference' as an importable package[^1],
2025-06-12T04:55:58,885           but it is absent from setuptools' `packages` configuration.

2025-06-12T04:55:58,887           This leads to an ambiguous overall configuration. If you want to distribute this
2025-06-12T04:55:58,887           package, please make sure that 'mitylib.reference' is explicitly added
2025-06-12T04:55:58,888           to the `packages` configuration field.

2025-06-12T04:55:58,889           Alternatively, you can also rely on setuptools' discovery methods
2025-06-12T04:55:58,889           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-06-12T04:55:58,890           instead of `find_packages(...)`/`find:`).

2025-06-12T04:55:58,891           You can read more about "package discovery" on setuptools documentation page:

2025-06-12T04:55:58,893           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-06-12T04:55:58,894           If you don't want 'mitylib.reference' to be distributed and are
2025-06-12T04:55:58,895           already explicitly excluding 'mitylib.reference' via
2025-06-12T04:55:58,895           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-06-12T04:55:58,896           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-06-12T04:55:58,897           combination with a more fine grained `package-data` configuration.

2025-06-12T04:55:58,898           You can read more about "package data files" on setuptools documentation page:

2025-06-12T04:55:58,899           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-06-12T04:55:58,903           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-06-12T04:55:58,904                 even if it does not contain any `.py` files.
2025-06-12T04:55:58,904                 On the other hand, currently there is no concept of package data
2025-06-12T04:55:58,905                 directory, all directories are treated like packages.
2025-06-12T04:55:58,905           ********************************************************************************

2025-06-12T04:55:58,907   !!
2025-06-12T04:55:58,907     check.warn(importable)
2025-06-12T04:55:58,908   copying mitylib/mity -> build/lib/mitylib
2025-06-12T04:55:58,909   creating build/lib/mitylib/annot_chrm
2025-06-12T04:55:58,910   copying mitylib/annot_chrm/chrm_anticodon_positions.bed.gz -> build/lib/mitylib/annot_chrm
2025-06-12T04:55:58,910   copying mitylib/annot_chrm/chrm_anticodon_positions.bed.gz.tbi -> build/lib/mitylib/annot_chrm
2025-06-12T04:55:58,911   copying mitylib/annot_chrm/chrm_gtf_annotations.bed.gz -> build/lib/mitylib/annot_chrm
2025-06-12T04:55:58,912   copying mitylib/annot_chrm/chrm_gtf_annotations.bed.gz.tbi -> build/lib/mitylib/annot_chrm
2025-06-12T04:55:58,912   copying mitylib/annot_chrm/chrm_haplotype_data.vcf.gz -> build/lib/mitylib/annot_chrm
2025-06-12T04:55:58,913   copying mitylib/annot_chrm/chrm_haplotype_data.vcf.gz.tbi -> build/lib/mitylib/annot_chrm
2025-06-12T04:55:58,913   copying mitylib/annot_chrm/chrm_mgrb_variants.vcf.gz -> build/lib/mitylib/annot_chrm
2025-06-12T04:55:58,914   copying mitylib/annot_chrm/chrm_mgrb_variants.vcf.gz.tbi -> build/lib/mitylib/annot_chrm
2025-06-12T04:55:58,915   copying mitylib/annot_chrm/chrm_mito_dna_func_loc.bed.gz -> build/lib/mitylib/annot_chrm
2025-06-12T04:55:58,915   copying mitylib/annot_chrm/chrm_mito_dna_func_loc.bed.gz.tbi -> build/lib/mitylib/annot_chrm
2025-06-12T04:55:58,916   copying mitylib/annot_chrm/chrm_mitomap_panel_annotations.vcf.gz -> build/lib/mitylib/annot_chrm
2025-06-12T04:55:58,917   copying mitylib/annot_chrm/chrm_mitomap_panel_annotations.vcf.gz.tbi -> build/lib/mitylib/annot_chrm
2025-06-12T04:55:58,917   copying mitylib/annot_chrm/chrm_mitotip_score_fixed_del.vcf.gz -> build/lib/mitylib/annot_chrm
2025-06-12T04:55:58,918   copying mitylib/annot_chrm/chrm_mitotip_score_fixed_del.vcf.gz.tbi -> build/lib/mitylib/annot_chrm
2025-06-12T04:55:58,918   creating build/lib/mitylib/annot_mt
2025-06-12T04:55:58,919   copying mitylib/annot_mt/anticodon_positions.bed.gz -> build/lib/mitylib/annot_mt
2025-06-12T04:55:58,920   copying mitylib/annot_mt/anticodon_positions.bed.gz.tbi -> build/lib/mitylib/annot_mt
2025-06-12T04:55:58,920   copying mitylib/annot_mt/gtf_annotations.bed.gz -> build/lib/mitylib/annot_mt
2025-06-12T04:55:58,921   copying mitylib/annot_mt/gtf_annotations.bed.gz.tbi -> build/lib/mitylib/annot_mt
2025-06-12T04:55:58,922   copying mitylib/annot_mt/haplotype_data.vcf.gz -> build/lib/mitylib/annot_mt
2025-06-12T04:55:58,922   copying mitylib/annot_mt/haplotype_data.vcf.gz.tbi -> build/lib/mitylib/annot_mt
2025-06-12T04:55:58,922   copying mitylib/annot_mt/mgrb_variants.vcf.gz -> build/lib/mitylib/annot_mt
2025-06-12T04:55:58,923   copying mitylib/annot_mt/mgrb_variants.vcf.gz.tbi -> build/lib/mitylib/annot_mt
2025-06-12T04:55:58,923   copying mitylib/annot_mt/mito_dna_func_loc.bed.gz -> build/lib/mitylib/annot_mt
2025-06-12T04:55:58,924   copying mitylib/annot_mt/mito_dna_func_loc.bed.gz.tbi -> build/lib/mitylib/annot_mt
2025-06-12T04:55:58,924   copying mitylib/annot_mt/mitomap_panel_annotations.vcf.gz -> build/lib/mitylib/annot_mt
2025-06-12T04:55:58,925   copying mitylib/annot_mt/mitomap_panel_annotations.vcf.gz.tbi -> build/lib/mitylib/annot_mt
2025-06-12T04:55:58,926   copying mitylib/annot_mt/mitotip_score_fixed_del.vcf.gz -> build/lib/mitylib/annot_mt
2025-06-12T04:55:58,926   copying mitylib/annot_mt/mitotip_score_fixed_del.vcf.gz.tbi -> build/lib/mitylib/annot_mt
2025-06-12T04:55:58,927   creating build/lib/mitylib/config
2025-06-12T04:55:58,928   copying mitylib/config/report-config.yaml -> build/lib/mitylib/config
2025-06-12T04:55:58,928   copying mitylib/config/vcfanno-config-chrm.toml -> build/lib/mitylib/config
2025-06-12T04:55:58,929   copying mitylib/config/vcfanno-config-mt.toml -> build/lib/mitylib/config
2025-06-12T04:55:58,929   creating build/lib/mitylib/reference
2025-06-12T04:55:58,930   copying mitylib/reference/hg19.chrM.fa -> build/lib/mitylib/reference
2025-06-12T04:55:58,930   copying mitylib/reference/hg19.chrM.fa.fai -> build/lib/mitylib/reference
2025-06-12T04:55:58,931   copying mitylib/reference/hg19.dict -> build/lib/mitylib/reference
2025-06-12T04:55:58,933   copying mitylib/reference/hg19.genome -> build/lib/mitylib/reference
2025-06-12T04:55:58,935   copying mitylib/reference/hg38.chrM.fa -> build/lib/mitylib/reference
2025-06-12T04:55:58,938   copying mitylib/reference/hg38.chrM.fa.fai -> build/lib/mitylib/reference
2025-06-12T04:55:58,941   copying mitylib/reference/hg38.dict -> build/lib/mitylib/reference
2025-06-12T04:55:58,954   copying mitylib/reference/hg38.genome -> build/lib/mitylib/reference
2025-06-12T04:55:58,959   copying mitylib/reference/hs37d5.MT.fa -> build/lib/mitylib/reference
2025-06-12T04:55:58,962   copying mitylib/reference/hs37d5.MT.fa.fai -> build/lib/mitylib/reference
2025-06-12T04:55:58,964   copying mitylib/reference/hs37d5.dict -> build/lib/mitylib/reference
2025-06-12T04:55:58,967   copying mitylib/reference/hs37d5.genome -> build/lib/mitylib/reference
2025-06-12T04:55:58,969   copying mitylib/reference/mm10.chrM.fa -> build/lib/mitylib/reference
2025-06-12T04:55:58,973   copying mitylib/reference/mm10.chrM.fa.fai -> build/lib/mitylib/reference
2025-06-12T04:55:58,976   copying mitylib/reference/mm10.genome -> build/lib/mitylib/reference
2025-06-12T04:55:58,978   running build_scripts
2025-06-12T04:55:58,979   creating build/scripts-3.11
2025-06-12T04:55:58,980   copying and adjusting mitylib/mity -> build/scripts-3.11
2025-06-12T04:55:58,982   changing mode of build/scripts-3.11/mity from 644 to 755
2025-06-12T04:55:59,010   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-06-12T04:55:59,011   !!

2025-06-12T04:55:59,012           ********************************************************************************
2025-06-12T04:55:59,013           Please avoid running ``setup.py`` directly.
2025-06-12T04:55:59,013           Instead, use pypa/build, pypa/installer or other
2025-06-12T04:55:59,014           standards-based tools.

2025-06-12T04:55:59,015           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-06-12T04:55:59,016           or your builds will no longer be supported.

2025-06-12T04:55:59,017           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-06-12T04:55:59,018           ********************************************************************************

2025-06-12T04:55:59,019   !!
2025-06-12T04:55:59,019     self.initialize_options()
2025-06-12T04:55:59,040   installing to build/bdist.linux-armv7l/wheel
2025-06-12T04:55:59,041   running install
2025-06-12T04:55:59,065   running install_lib
2025-06-12T04:55:59,093   creating build/bdist.linux-armv7l/wheel
2025-06-12T04:55:59,095   creating build/bdist.linux-armv7l/wheel/mitylib
2025-06-12T04:55:59,096   copying build/lib/mitylib/_version.py -> build/bdist.linux-armv7l/wheel/./mitylib
2025-06-12T04:55:59,099   creating build/bdist.linux-armv7l/wheel/mitylib/annot_mt
2025-06-12T04:55:59,100   copying build/lib/mitylib/annot_mt/mito_dna_func_loc.bed.gz -> build/bdist.linux-armv7l/wheel/./mitylib/annot_mt
2025-06-12T04:55:59,104   copying build/lib/mitylib/annot_mt/haplotype_data.vcf.gz -> build/bdist.linux-armv7l/wheel/./mitylib/annot_mt
2025-06-12T04:55:59,107   copying build/lib/mitylib/annot_mt/anticodon_positions.bed.gz.tbi -> build/bdist.linux-armv7l/wheel/./mitylib/annot_mt
2025-06-12T04:55:59,109   copying build/lib/mitylib/annot_mt/mito_dna_func_loc.bed.gz.tbi -> build/bdist.linux-armv7l/wheel/./mitylib/annot_mt
2025-06-12T04:55:59,111   copying build/lib/mitylib/annot_mt/mgrb_variants.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/./mitylib/annot_mt
2025-06-12T04:55:59,113   copying build/lib/mitylib/annot_mt/anticodon_positions.bed.gz -> build/bdist.linux-armv7l/wheel/./mitylib/annot_mt
2025-06-12T04:55:59,114   copying build/lib/mitylib/annot_mt/gtf_annotations.bed.gz -> build/bdist.linux-armv7l/wheel/./mitylib/annot_mt
2025-06-12T04:55:59,118   copying build/lib/mitylib/annot_mt/mitotip_score_fixed_del.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/./mitylib/annot_mt
2025-06-12T04:55:59,120   copying build/lib/mitylib/annot_mt/gtf_annotations.bed.gz.tbi -> build/bdist.linux-armv7l/wheel/./mitylib/annot_mt
2025-06-12T04:55:59,122   copying build/lib/mitylib/annot_mt/mitomap_panel_annotations.vcf.gz -> build/bdist.linux-armv7l/wheel/./mitylib/annot_mt
2025-06-12T04:55:59,127   copying build/lib/mitylib/annot_mt/mitomap_panel_annotations.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/./mitylib/annot_mt
2025-06-12T04:55:59,129   copying build/lib/mitylib/annot_mt/haplotype_data.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/./mitylib/annot_mt
2025-06-12T04:55:59,131   copying build/lib/mitylib/annot_mt/mitotip_score_fixed_del.vcf.gz -> build/bdist.linux-armv7l/wheel/./mitylib/annot_mt
2025-06-12T04:55:59,134   copying build/lib/mitylib/annot_mt/mgrb_variants.vcf.gz -> build/bdist.linux-armv7l/wheel/./mitylib/annot_mt
2025-06-12T04:55:59,137   creating build/bdist.linux-armv7l/wheel/mitylib/config
2025-06-12T04:55:59,138   copying build/lib/mitylib/config/report-config.yaml -> build/bdist.linux-armv7l/wheel/./mitylib/config
2025-06-12T04:55:59,141   copying build/lib/mitylib/config/vcfanno-config-mt.toml -> build/bdist.linux-armv7l/wheel/./mitylib/config
2025-06-12T04:55:59,143   copying build/lib/mitylib/config/vcfanno-config-chrm.toml -> build/bdist.linux-armv7l/wheel/./mitylib/config
2025-06-12T04:55:59,144   copying build/lib/mitylib/commands.py -> build/bdist.linux-armv7l/wheel/./mitylib
2025-06-12T04:55:59,147   copying build/lib/mitylib/merge.py -> build/bdist.linux-armv7l/wheel/./mitylib
2025-06-12T04:55:59,150   copying build/lib/mitylib/report.py -> build/bdist.linux-armv7l/wheel/./mitylib
2025-06-12T04:55:59,152   copying build/lib/mitylib/__init__.py -> build/bdist.linux-armv7l/wheel/./mitylib
2025-06-12T04:55:59,154   copying build/lib/mitylib/mity -> build/bdist.linux-armv7l/wheel/./mitylib
2025-06-12T04:55:59,156   creating build/bdist.linux-armv7l/wheel/mitylib/annot_chrm
2025-06-12T04:55:59,157   copying build/lib/mitylib/annot_chrm/chrm_mgrb_variants.vcf.gz -> build/bdist.linux-armv7l/wheel/./mitylib/annot_chrm
2025-06-12T04:55:59,160   copying build/lib/mitylib/annot_chrm/chrm_gtf_annotations.bed.gz -> build/bdist.linux-armv7l/wheel/./mitylib/annot_chrm
2025-06-12T04:55:59,164   copying build/lib/mitylib/annot_chrm/chrm_mito_dna_func_loc.bed.gz -> build/bdist.linux-armv7l/wheel/./mitylib/annot_chrm
2025-06-12T04:55:59,167   copying build/lib/mitylib/annot_chrm/chrm_mgrb_variants.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/./mitylib/annot_chrm
2025-06-12T04:55:59,169   copying build/lib/mitylib/annot_chrm/chrm_haplotype_data.vcf.gz -> build/bdist.linux-armv7l/wheel/./mitylib/annot_chrm
2025-06-12T04:55:59,172   copying build/lib/mitylib/annot_chrm/chrm_mitomap_panel_annotations.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/./mitylib/annot_chrm
2025-06-12T04:55:59,174   copying build/lib/mitylib/annot_chrm/chrm_mitomap_panel_annotations.vcf.gz -> build/bdist.linux-armv7l/wheel/./mitylib/annot_chrm
2025-06-12T04:55:59,179   copying build/lib/mitylib/annot_chrm/chrm_anticodon_positions.bed.gz -> build/bdist.linux-armv7l/wheel/./mitylib/annot_chrm
2025-06-12T04:55:59,181   copying build/lib/mitylib/annot_chrm/chrm_mitotip_score_fixed_del.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/./mitylib/annot_chrm
2025-06-12T04:55:59,183   copying build/lib/mitylib/annot_chrm/chrm_gtf_annotations.bed.gz.tbi -> build/bdist.linux-armv7l/wheel/./mitylib/annot_chrm
2025-06-12T04:55:59,185   copying build/lib/mitylib/annot_chrm/chrm_mitotip_score_fixed_del.vcf.gz -> build/bdist.linux-armv7l/wheel/./mitylib/annot_chrm
2025-06-12T04:55:59,188   copying build/lib/mitylib/annot_chrm/chrm_anticodon_positions.bed.gz.tbi -> build/bdist.linux-armv7l/wheel/./mitylib/annot_chrm
2025-06-12T04:55:59,190   copying build/lib/mitylib/annot_chrm/chrm_mito_dna_func_loc.bed.gz.tbi -> build/bdist.linux-armv7l/wheel/./mitylib/annot_chrm
2025-06-12T04:55:59,192   copying build/lib/mitylib/annot_chrm/chrm_haplotype_data.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/./mitylib/annot_chrm
2025-06-12T04:55:59,194   creating build/bdist.linux-armv7l/wheel/mitylib/reference
2025-06-12T04:55:59,195   copying build/lib/mitylib/reference/hg38.genome -> build/bdist.linux-armv7l/wheel/./mitylib/reference
2025-06-12T04:55:59,200   copying build/lib/mitylib/reference/hs37d5.MT.fa.fai -> build/bdist.linux-armv7l/wheel/./mitylib/reference
2025-06-12T04:55:59,201   copying build/lib/mitylib/reference/hg38.chrM.fa -> build/bdist.linux-armv7l/wheel/./mitylib/reference
2025-06-12T04:55:59,204   copying build/lib/mitylib/reference/hg19.dict -> build/bdist.linux-armv7l/wheel/./mitylib/reference
2025-06-12T04:55:59,206   copying build/lib/mitylib/reference/hg19.chrM.fa -> build/bdist.linux-armv7l/wheel/./mitylib/reference
2025-06-12T04:55:59,209   copying build/lib/mitylib/reference/mm10.chrM.fa -> build/bdist.linux-armv7l/wheel/./mitylib/reference
2025-06-12T04:55:59,212   copying build/lib/mitylib/reference/hs37d5.dict -> build/bdist.linux-armv7l/wheel/./mitylib/reference
2025-06-12T04:55:59,214   copying build/lib/mitylib/reference/hg19.chrM.fa.fai -> build/bdist.linux-armv7l/wheel/./mitylib/reference
2025-06-12T04:55:59,216   copying build/lib/mitylib/reference/hs37d5.MT.fa -> build/bdist.linux-armv7l/wheel/./mitylib/reference
2025-06-12T04:55:59,218   copying build/lib/mitylib/reference/hg38.dict -> build/bdist.linux-armv7l/wheel/./mitylib/reference
2025-06-12T04:55:59,231   copying build/lib/mitylib/reference/hg19.genome -> build/bdist.linux-armv7l/wheel/./mitylib/reference
2025-06-12T04:55:59,234   copying build/lib/mitylib/reference/hg38.chrM.fa.fai -> build/bdist.linux-armv7l/wheel/./mitylib/reference
2025-06-12T04:55:59,235   copying build/lib/mitylib/reference/mm10.genome -> build/bdist.linux-armv7l/wheel/./mitylib/reference
2025-06-12T04:55:59,237   copying build/lib/mitylib/reference/hs37d5.genome -> build/bdist.linux-armv7l/wheel/./mitylib/reference
2025-06-12T04:55:59,239   copying build/lib/mitylib/reference/mm10.chrM.fa.fai -> build/bdist.linux-armv7l/wheel/./mitylib/reference
2025-06-12T04:55:59,242   copying build/lib/mitylib/util.py -> build/bdist.linux-armv7l/wheel/./mitylib
2025-06-12T04:55:59,244   copying build/lib/mitylib/normalise.py -> build/bdist.linux-armv7l/wheel/./mitylib
2025-06-12T04:55:59,247   copying build/lib/mitylib/call.py -> build/bdist.linux-armv7l/wheel/./mitylib
2025-06-12T04:55:59,249   running install_egg_info
2025-06-12T04:55:59,285   Copying mitywgs.egg-info to build/bdist.linux-armv7l/wheel/./mitywgs-1.2.0-py3.11.egg-info
2025-06-12T04:55:59,295   running install_scripts
2025-06-12T04:55:59,296   creating build/bdist.linux-armv7l/wheel/mitywgs-1.2.0.data/scripts
2025-06-12T04:55:59,298   copying build/scripts-3.11/mity -> build/bdist.linux-armv7l/wheel/mitywgs-1.2.0.data/scripts
2025-06-12T04:55:59,300   changing mode of build/bdist.linux-armv7l/wheel/mitywgs-1.2.0.data/scripts/mity to 755
2025-06-12T04:55:59,312   creating build/bdist.linux-armv7l/wheel/mitywgs-1.2.0.dist-info/WHEEL
2025-06-12T04:55:59,314   creating '/tmp/pip-wheel-9jkkna6o/mitywgs-1.2.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-06-12T04:55:59,317   adding 'mitylib/__init__.py'
2025-06-12T04:55:59,318   adding 'mitylib/_version.py'
2025-06-12T04:55:59,320   adding 'mitylib/call.py'
2025-06-12T04:55:59,322   adding 'mitylib/commands.py'
2025-06-12T04:55:59,324   adding 'mitylib/merge.py'
2025-06-12T04:55:59,326   adding 'mitylib/mity'
2025-06-12T04:55:59,328   adding 'mitylib/normalise.py'
2025-06-12T04:55:59,330   adding 'mitylib/report.py'
2025-06-12T04:55:59,332   adding 'mitylib/util.py'
2025-06-12T04:55:59,334   adding 'mitylib/annot_chrm/chrm_anticodon_positions.bed.gz'
2025-06-12T04:55:59,335   adding 'mitylib/annot_chrm/chrm_anticodon_positions.bed.gz.tbi'
2025-06-12T04:55:59,340   adding 'mitylib/annot_chrm/chrm_gtf_annotations.bed.gz'
2025-06-12T04:55:59,341   adding 'mitylib/annot_chrm/chrm_gtf_annotations.bed.gz.tbi'
2025-06-12T04:55:59,347   adding 'mitylib/annot_chrm/chrm_haplotype_data.vcf.gz'
2025-06-12T04:55:59,348   adding 'mitylib/annot_chrm/chrm_haplotype_data.vcf.gz.tbi'
2025-06-12T04:55:59,352   adding 'mitylib/annot_chrm/chrm_mgrb_variants.vcf.gz'
2025-06-12T04:55:59,353   adding 'mitylib/annot_chrm/chrm_mgrb_variants.vcf.gz.tbi'
2025-06-12T04:55:59,359   adding 'mitylib/annot_chrm/chrm_mito_dna_func_loc.bed.gz'
2025-06-12T04:55:59,361   adding 'mitylib/annot_chrm/chrm_mito_dna_func_loc.bed.gz.tbi'
2025-06-12T04:55:59,383   adding 'mitylib/annot_chrm/chrm_mitomap_panel_annotations.vcf.gz'
2025-06-12T04:55:59,386   adding 'mitylib/annot_chrm/chrm_mitomap_panel_annotations.vcf.gz.tbi'
2025-06-12T04:55:59,392   adding 'mitylib/annot_chrm/chrm_mitotip_score_fixed_del.vcf.gz'
2025-06-12T04:55:59,394   adding 'mitylib/annot_chrm/chrm_mitotip_score_fixed_del.vcf.gz.tbi'
2025-06-12T04:55:59,396   adding 'mitylib/annot_mt/anticodon_positions.bed.gz'
2025-06-12T04:55:59,397   adding 'mitylib/annot_mt/anticodon_positions.bed.gz.tbi'
2025-06-12T04:55:59,402   adding 'mitylib/annot_mt/gtf_annotations.bed.gz'
2025-06-12T04:55:59,403   adding 'mitylib/annot_mt/gtf_annotations.bed.gz.tbi'
2025-06-12T04:55:59,409   adding 'mitylib/annot_mt/haplotype_data.vcf.gz'
2025-06-12T04:55:59,410   adding 'mitylib/annot_mt/haplotype_data.vcf.gz.tbi'
2025-06-12T04:55:59,413   adding 'mitylib/annot_mt/mgrb_variants.vcf.gz'
2025-06-12T04:55:59,415   adding 'mitylib/annot_mt/mgrb_variants.vcf.gz.tbi'
2025-06-12T04:55:59,421   adding 'mitylib/annot_mt/mito_dna_func_loc.bed.gz'
2025-06-12T04:55:59,422   adding 'mitylib/annot_mt/mito_dna_func_loc.bed.gz.tbi'
2025-06-12T04:55:59,445   adding 'mitylib/annot_mt/mitomap_panel_annotations.vcf.gz'
2025-06-12T04:55:59,447   adding 'mitylib/annot_mt/mitomap_panel_annotations.vcf.gz.tbi'
2025-06-12T04:55:59,454   adding 'mitylib/annot_mt/mitotip_score_fixed_del.vcf.gz'
2025-06-12T04:55:59,455   adding 'mitylib/annot_mt/mitotip_score_fixed_del.vcf.gz.tbi'
2025-06-12T04:55:59,457   adding 'mitylib/config/report-config.yaml'
2025-06-12T04:55:59,459   adding 'mitylib/config/vcfanno-config-chrm.toml'
2025-06-12T04:55:59,460   adding 'mitylib/config/vcfanno-config-mt.toml'
2025-06-12T04:55:59,468   adding 'mitylib/reference/hg19.chrM.fa'
2025-06-12T04:55:59,470   adding 'mitylib/reference/hg19.chrM.fa.fai'
2025-06-12T04:55:59,471   adding 'mitylib/reference/hg19.dict'
2025-06-12T04:55:59,473   adding 'mitylib/reference/hg19.genome'
2025-06-12T04:55:59,481   adding 'mitylib/reference/hg38.chrM.fa'
2025-06-12T04:55:59,482   adding 'mitylib/reference/hg38.chrM.fa.fai'
2025-06-12T04:55:59,518   adding 'mitylib/reference/hg38.dict'
2025-06-12T04:55:59,531   adding 'mitylib/reference/hg38.genome'
2025-06-12T04:55:59,540   adding 'mitylib/reference/hs37d5.MT.fa'
2025-06-12T04:55:59,541   adding 'mitylib/reference/hs37d5.MT.fa.fai'
2025-06-12T04:55:59,543   adding 'mitylib/reference/hs37d5.dict'
2025-06-12T04:55:59,544   adding 'mitylib/reference/hs37d5.genome'
2025-06-12T04:55:59,552   adding 'mitylib/reference/mm10.chrM.fa'
2025-06-12T04:55:59,560   adding 'mitylib/reference/mm10.chrM.fa.fai'
2025-06-12T04:55:59,562   adding 'mitylib/reference/mm10.genome'
2025-06-12T04:55:59,564   adding 'mitywgs-1.2.0.data/scripts/mity'
2025-06-12T04:55:59,566   adding 'mitywgs-1.2.0.dist-info/licenses/LICENSE.txt'
2025-06-12T04:55:59,568   adding 'mitywgs-1.2.0.dist-info/METADATA'
2025-06-12T04:55:59,569   adding 'mitywgs-1.2.0.dist-info/WHEEL'
2025-06-12T04:55:59,570   adding 'mitywgs-1.2.0.dist-info/top_level.txt'
2025-06-12T04:55:59,572   adding 'mitywgs-1.2.0.dist-info/RECORD'
2025-06-12T04:55:59,587   removing build/bdist.linux-armv7l/wheel
2025-06-12T04:55:59,716   Building wheel for mitywgs (setup.py): finished with status 'done'
2025-06-12T04:55:59,728   Created wheel for mitywgs: filename=mitywgs-1.2.0-py3-none-any.whl size=909929 sha256=2eace025a387ebfbcb0111b29f97cf4820491153e828d2f844511f8b0bfc69ba
2025-06-12T04:55:59,729   Stored in directory: /tmp/pip-ephem-wheel-cache-0oo9lqjx/wheels/4d/83/54/7f6f6ebb88a622d277884cd919ae1e7da7355e8c0227ce2a85
2025-06-12T04:55:59,744 Successfully built mitywgs
2025-06-12T04:55:59,783 Removed build tracker: '/tmp/pip-build-tracker-os743dck'