2025-06-12T04:56:05,903 Created temporary directory: /tmp/pip-build-tracker-5dgp0scf
2025-06-12T04:56:05,904 Initialized build tracking at /tmp/pip-build-tracker-5dgp0scf
2025-06-12T04:56:05,904 Created build tracker: /tmp/pip-build-tracker-5dgp0scf
2025-06-12T04:56:05,905 Entered build tracker: /tmp/pip-build-tracker-5dgp0scf
2025-06-12T04:56:05,906 Created temporary directory: /tmp/pip-wheel-7_352h5v
2025-06-12T04:56:05,910 Created temporary directory: /tmp/pip-ephem-wheel-cache-xthwba8k
2025-06-12T04:56:05,958 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-06-12T04:56:05,961 2 location(s) to search for versions of mitywgs:
2025-06-12T04:56:05,961 * https://pypi.org/simple/mitywgs/
2025-06-12T04:56:05,961 * https://www.piwheels.org/simple/mitywgs/
2025-06-12T04:56:05,962 Fetching project page and analyzing links: https://pypi.org/simple/mitywgs/
2025-06-12T04:56:05,962 Getting page https://pypi.org/simple/mitywgs/
2025-06-12T04:56:05,964 Found index url https://pypi.org/simple/
2025-06-12T04:56:06,116 Fetched page https://pypi.org/simple/mitywgs/ as application/vnd.pypi.simple.v1+json
2025-06-12T04:56:06,119   Skipping link: No binaries permitted for mitywgs: https://files.pythonhosted.org/packages/95/5f/0fba9bf0dc8952226a3f354f63799ffc90c6316bd29655a65af24a4eb38a/mitywgs-0.1.0-py3-none-any.whl (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.3)
2025-06-12T04:56:06,120   Found link https://files.pythonhosted.org/packages/86/fc/4260dd9cae80420e003f605e31b54e73af7fb685625664d1ccf0435ac64e/mitywgs-0.1.0.tar.gz (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.3), version: 0.1.0
2025-06-12T04:56:06,121   Skipping link: No binaries permitted for mitywgs: https://files.pythonhosted.org/packages/4f/5e/b43206082ca61da3e83d9e5c1e143c3de55f32c04146c81a70281726522a/mitywgs-0.1.1-py3-none-any.whl (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.3)
2025-06-12T04:56:06,122   Found link https://files.pythonhosted.org/packages/9b/c5/77f664847f6788589008debb792b3c5436e4b496a030cb90e2062aaa1086/mitywgs-0.1.1.tar.gz (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.3), version: 0.1.1
2025-06-12T04:56:06,122   Skipping link: No binaries permitted for mitywgs: https://files.pythonhosted.org/packages/e5/b4/1512000bcbc0c4187fb9078309af272f45133fd51123b493a487b4712d3d/mitywgs-0.1.2-py3-none-any.whl (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.3)
2025-06-12T04:56:06,123   Found link https://files.pythonhosted.org/packages/9a/17/bd154ed0992c1dfe18326afd02587f9acc83c7f06d0d10c7b1953b4dbd26/mitywgs-0.1.2.tar.gz (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.3), version: 0.1.2
2025-06-12T04:56:06,124   Skipping link: No binaries permitted for mitywgs: https://files.pythonhosted.org/packages/40/b3/d2199c137c3893b5935b31a46b771ca9cb02e01ea169646a124bc8b19bde/mitywgs-0.1.3-py3-none-any.whl (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.3)
2025-06-12T04:56:06,124   Found link https://files.pythonhosted.org/packages/09/89/ec808bf6dd1fb7095eda564ef732a03d2146981fa599f862b3d0ed07a687/mitywgs-0.1.3.tar.gz (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.3), version: 0.1.3
2025-06-12T04:56:06,125   Skipping link: No binaries permitted for mitywgs: https://files.pythonhosted.org/packages/c7/ab/17446e81990597f0ede16c0426ba76037f02b440dc5d51a6b8dc9a208881/mitywgs-0.2.0-py3-none-any.whl (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.3)
2025-06-12T04:56:06,126   Found link https://files.pythonhosted.org/packages/c9/ab/7de2568d5ed11e067b0390fd31fa1d30eb099bce133b55cb0afed11c1986/mitywgs-0.2.0.tar.gz (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.3), version: 0.2.0
2025-06-12T04:56:06,127   Found link https://files.pythonhosted.org/packages/1d/42/c1c72c18c8e20c698dde0e058896655b177d48e46693afd5f25a4820a8d0/mitywgs-0.2.1.tar.gz (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.4), version: 0.2.1
2025-06-12T04:56:06,128   Skipping link: No binaries permitted for mitywgs: https://files.pythonhosted.org/packages/70/65/149da0fc3c6b39d585afe30be8e565acd57c30ab061098b91d24e4bf3b28/mitywgs-0.3.0-py3-none-any.whl (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.4)
2025-06-12T04:56:06,128   Found link https://files.pythonhosted.org/packages/85/f2/da170c825d1453e9c350e288bd19018b54d9df4dc1c1d1fcb7332bbc67d2/mitywgs-0.3.0.tar.gz (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.4), version: 0.3.0
2025-06-12T04:56:06,129   Skipping link: No binaries permitted for mitywgs: https://files.pythonhosted.org/packages/29/f0/3e335d7958a5d6d3dcf1dfba93594eec77bcf0aa9adde9d0978c0ff444bb/mitywgs-0.3.1-py3-none-any.whl (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.4)
2025-06-12T04:56:06,130   Found link https://files.pythonhosted.org/packages/93/a8/845e11c50e4bf8459685b1fe4a3123c2495d573056c3e56a17c6e84d35c5/mitywgs-0.3.1.tar.gz (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.4), version: 0.3.1
2025-06-12T04:56:06,130   Skipping link: No binaries permitted for mitywgs: https://files.pythonhosted.org/packages/1b/9e/ca91734f30aaf35c1b27ac388e8b333de771694b23c20559ab3c7469abe3/mitywgs-0.4.0-py3-none-any.whl (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.4)
2025-06-12T04:56:06,131   Found link https://files.pythonhosted.org/packages/11/3e/0afdf01d6c7065637962c87ace18a33bfdd4c33a0685f255459a73c29662/mitywgs-0.4.0.tar.gz (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.4), version: 0.4.0
2025-06-12T04:56:06,132   Found link https://files.pythonhosted.org/packages/27/00/b37d3d18ec330c45f5922187afc37eaa805a6182d8fa29954c29652068a7/mitywgs-1.0.0.tar.gz (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.4), version: 1.0.0
2025-06-12T04:56:06,132   Found link https://files.pythonhosted.org/packages/8b/07/911f1a30fcd360a0861a2f6bb887f87a39b2d4cb788123cfbc3856e7f4de/mitywgs-1.1.0.tar.gz (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.5.4), version: 1.1.0
2025-06-12T04:56:06,133   Found link https://files.pythonhosted.org/packages/d3/32/3e4a32faed6f5c80577d01b95ef993ec8ebe13d15b0328c172bd7fbc8f93/mitywgs-1.2.0.tar.gz (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.10), version: 1.2.0
2025-06-12T04:56:06,134   Found link https://files.pythonhosted.org/packages/58/56/3c4d991974d5cae481f5cd6d4885b42538545ecbd1a2038d0fd10b69c153/mitywgs-2.0.0.tar.gz (from https://pypi.org/simple/mitywgs/) (requires-python:>=3.10), version: 2.0.0
2025-06-12T04:56:06,135 Fetching project page and analyzing links: https://www.piwheels.org/simple/mitywgs/
2025-06-12T04:56:06,136 Getting page https://www.piwheels.org/simple/mitywgs/
2025-06-12T04:56:06,137 Found index url https://www.piwheels.org/simple/
2025-06-12T04:56:06,301 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/mitywgs/
2025-06-12T04:56:06,959 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/mitywgs/
2025-06-12T04:56:08,114 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/mitywgs/
2025-06-12T04:56:10,271 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/mitywgs/
2025-06-12T04:56:14,431 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/mitywgs/
2025-06-12T04:56:14,593 Could not fetch URL https://www.piwheels.org/simple/mitywgs/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/mitywgs/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping
2025-06-12T04:56:14,595 Skipping link: not a file: https://www.piwheels.org/simple/mitywgs/
2025-06-12T04:56:14,596 Skipping link: not a file: https://pypi.org/simple/mitywgs/
2025-06-12T04:56:14,615 Given no hashes to check 1 links for project 'mitywgs': discarding no candidates
2025-06-12T04:56:14,617 Collecting mitywgs==2.0.0
2025-06-12T04:56:14,619   Created temporary directory: /tmp/pip-unpack-xg3dwjkz
2025-06-12T04:56:14,966   Downloading mitywgs-2.0.0.tar.gz (1.4 MB)
2025-06-12T04:56:15,472   Added mitywgs==2.0.0 from https://files.pythonhosted.org/packages/58/56/3c4d991974d5cae481f5cd6d4885b42538545ecbd1a2038d0fd10b69c153/mitywgs-2.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-5dgp0scf'
2025-06-12T04:56:15,474   Running setup.py (path:/tmp/pip-wheel-7_352h5v/mitywgs_77c3f41ae29444a5b85d04d455dd6998/setup.py) egg_info for package mitywgs
2025-06-12T04:56:15,475   Created temporary directory: /tmp/pip-pip-egg-info-mr4m_irb
2025-06-12T04:56:15,475   Preparing metadata (setup.py): started
2025-06-12T04:56:15,476   Running command python setup.py egg_info
2025-06-12T04:56:16,321   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-06-12T04:56:16,322   !!

2025-06-12T04:56:16,323           ********************************************************************************
2025-06-12T04:56:16,323           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-06-12T04:56:16,325           License :: Free for non-commercial use

2025-06-12T04:56:16,326           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-06-12T04:56:16,328           ********************************************************************************

2025-06-12T04:56:16,330   !!
2025-06-12T04:56:16,332     self._finalize_license_expression()
2025-06-12T04:56:16,354   running egg_info
2025-06-12T04:56:16,382   creating /tmp/pip-pip-egg-info-mr4m_irb/mitywgs.egg-info
2025-06-12T04:56:16,383   writing /tmp/pip-pip-egg-info-mr4m_irb/mitywgs.egg-info/PKG-INFO
2025-06-12T04:56:16,387   writing dependency_links to /tmp/pip-pip-egg-info-mr4m_irb/mitywgs.egg-info/dependency_links.txt
2025-06-12T04:56:16,389   writing requirements to /tmp/pip-pip-egg-info-mr4m_irb/mitywgs.egg-info/requires.txt
2025-06-12T04:56:16,390   writing top-level names to /tmp/pip-pip-egg-info-mr4m_irb/mitywgs.egg-info/top_level.txt
2025-06-12T04:56:16,391   writing manifest file '/tmp/pip-pip-egg-info-mr4m_irb/mitywgs.egg-info/SOURCES.txt'
2025-06-12T04:56:16,515   reading manifest file '/tmp/pip-pip-egg-info-mr4m_irb/mitywgs.egg-info/SOURCES.txt'
2025-06-12T04:56:16,517   adding license file 'LICENSE.txt'
2025-06-12T04:56:16,521   writing manifest file '/tmp/pip-pip-egg-info-mr4m_irb/mitywgs.egg-info/SOURCES.txt'
2025-06-12T04:56:16,632   Preparing metadata (setup.py): finished with status 'done'
2025-06-12T04:56:16,637   Source in /tmp/pip-wheel-7_352h5v/mitywgs_77c3f41ae29444a5b85d04d455dd6998 has version 2.0.0, which satisfies requirement mitywgs==2.0.0 from https://files.pythonhosted.org/packages/58/56/3c4d991974d5cae481f5cd6d4885b42538545ecbd1a2038d0fd10b69c153/mitywgs-2.0.0.tar.gz
2025-06-12T04:56:16,638   Removed mitywgs==2.0.0 from https://files.pythonhosted.org/packages/58/56/3c4d991974d5cae481f5cd6d4885b42538545ecbd1a2038d0fd10b69c153/mitywgs-2.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-5dgp0scf'
2025-06-12T04:56:16,646 Created temporary directory: /tmp/pip-unpack-4e0t8u0u
2025-06-12T04:56:16,647 Created temporary directory: /tmp/pip-unpack-k7leit9n
2025-06-12T04:56:16,648 Building wheels for collected packages: mitywgs
2025-06-12T04:56:16,652   Created temporary directory: /tmp/pip-wheel-m809ymuf
2025-06-12T04:56:16,653   DEPRECATION: Building 'mitywgs' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'mitywgs'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-06-12T04:56:16,654   Building wheel for mitywgs (setup.py): started
2025-06-12T04:56:16,655   Destination directory: /tmp/pip-wheel-m809ymuf
2025-06-12T04:56:16,656   Running command python setup.py bdist_wheel
2025-06-12T04:56:17,492   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-06-12T04:56:17,493   !!

2025-06-12T04:56:17,494           ********************************************************************************
2025-06-12T04:56:17,494           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-06-12T04:56:17,495           License :: Free for non-commercial use

2025-06-12T04:56:17,496           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-06-12T04:56:17,497           ********************************************************************************

2025-06-12T04:56:17,498   !!
2025-06-12T04:56:17,499     self._finalize_license_expression()
2025-06-12T04:56:17,500   running bdist_wheel
2025-06-12T04:56:17,634   running build
2025-06-12T04:56:17,634   running build_py
2025-06-12T04:56:17,665   creating build/lib/mitylib
2025-06-12T04:56:17,667   copying mitylib/_version.py -> build/lib/mitylib
2025-06-12T04:56:17,670   copying mitylib/commands.py -> build/lib/mitylib
2025-06-12T04:56:17,672   copying mitylib/merge.py -> build/lib/mitylib
2025-06-12T04:56:17,675   copying mitylib/report.py -> build/lib/mitylib
2025-06-12T04:56:17,677   copying mitylib/__init__.py -> build/lib/mitylib
2025-06-12T04:56:17,679   copying mitylib/util.py -> build/lib/mitylib
2025-06-12T04:56:17,681   copying mitylib/normalise.py -> build/lib/mitylib
2025-06-12T04:56:17,684   copying mitylib/call.py -> build/lib/mitylib
2025-06-12T04:56:17,686   running egg_info
2025-06-12T04:56:17,714   writing mitywgs.egg-info/PKG-INFO
2025-06-12T04:56:17,717   writing dependency_links to mitywgs.egg-info/dependency_links.txt
2025-06-12T04:56:17,719   writing requirements to mitywgs.egg-info/requires.txt
2025-06-12T04:56:17,721   writing top-level names to mitywgs.egg-info/top_level.txt
2025-06-12T04:56:17,759   reading manifest file 'mitywgs.egg-info/SOURCES.txt'
2025-06-12T04:56:17,765   adding license file 'LICENSE.txt'
2025-06-12T04:56:17,770   writing manifest file 'mitywgs.egg-info/SOURCES.txt'
2025-06-12T04:56:17,773   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'mitylib.annot_chrm' is absent from the `packages` configuration.
2025-06-12T04:56:17,774   !!

2025-06-12T04:56:17,775           ********************************************************************************
2025-06-12T04:56:17,775           ############################
2025-06-12T04:56:17,776           # Package would be ignored #
2025-06-12T04:56:17,777           ############################
2025-06-12T04:56:17,777           Python recognizes 'mitylib.annot_chrm' as an importable package[^1],
2025-06-12T04:56:17,778           but it is absent from setuptools' `packages` configuration.

2025-06-12T04:56:17,779           This leads to an ambiguous overall configuration. If you want to distribute this
2025-06-12T04:56:17,780           package, please make sure that 'mitylib.annot_chrm' is explicitly added
2025-06-12T04:56:17,780           to the `packages` configuration field.

2025-06-12T04:56:17,782           Alternatively, you can also rely on setuptools' discovery methods
2025-06-12T04:56:17,782           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-06-12T04:56:17,782           instead of `find_packages(...)`/`find:`).

2025-06-12T04:56:17,783           You can read more about "package discovery" on setuptools documentation page:

2025-06-12T04:56:17,784           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-06-12T04:56:17,785           If you don't want 'mitylib.annot_chrm' to be distributed and are
2025-06-12T04:56:17,785           already explicitly excluding 'mitylib.annot_chrm' via
2025-06-12T04:56:17,786           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-06-12T04:56:17,786           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-06-12T04:56:17,787           combination with a more fine grained `package-data` configuration.

2025-06-12T04:56:17,788           You can read more about "package data files" on setuptools documentation page:

2025-06-12T04:56:17,789           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-06-12T04:56:17,791           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-06-12T04:56:17,791                 even if it does not contain any `.py` files.
2025-06-12T04:56:17,792                 On the other hand, currently there is no concept of package data
2025-06-12T04:56:17,792                 directory, all directories are treated like packages.
2025-06-12T04:56:17,793           ********************************************************************************

2025-06-12T04:56:17,794   !!
2025-06-12T04:56:17,795     check.warn(importable)
2025-06-12T04:56:17,795   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'mitylib.annot_mt' is absent from the `packages` configuration.
2025-06-12T04:56:17,797   !!

2025-06-12T04:56:17,798           ********************************************************************************
2025-06-12T04:56:17,798           ############################
2025-06-12T04:56:17,799           # Package would be ignored #
2025-06-12T04:56:17,799           ############################
2025-06-12T04:56:17,800           Python recognizes 'mitylib.annot_mt' as an importable package[^1],
2025-06-12T04:56:17,800           but it is absent from setuptools' `packages` configuration.

2025-06-12T04:56:17,802           This leads to an ambiguous overall configuration. If you want to distribute this
2025-06-12T04:56:17,803           package, please make sure that 'mitylib.annot_mt' is explicitly added
2025-06-12T04:56:17,803           to the `packages` configuration field.

2025-06-12T04:56:17,804           Alternatively, you can also rely on setuptools' discovery methods
2025-06-12T04:56:17,805           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-06-12T04:56:17,806           instead of `find_packages(...)`/`find:`).

2025-06-12T04:56:17,807           You can read more about "package discovery" on setuptools documentation page:

2025-06-12T04:56:17,808           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-06-12T04:56:17,809           If you don't want 'mitylib.annot_mt' to be distributed and are
2025-06-12T04:56:17,810           already explicitly excluding 'mitylib.annot_mt' via
2025-06-12T04:56:17,810           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-06-12T04:56:17,811           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-06-12T04:56:17,811           combination with a more fine grained `package-data` configuration.

2025-06-12T04:56:17,812           You can read more about "package data files" on setuptools documentation page:

2025-06-12T04:56:17,814           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-06-12T04:56:17,817           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-06-12T04:56:17,818                 even if it does not contain any `.py` files.
2025-06-12T04:56:17,818                 On the other hand, currently there is no concept of package data
2025-06-12T04:56:17,818                 directory, all directories are treated like packages.
2025-06-12T04:56:17,819           ********************************************************************************

2025-06-12T04:56:17,820   !!
2025-06-12T04:56:17,820     check.warn(importable)
2025-06-12T04:56:17,821   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'mitylib.config' is absent from the `packages` configuration.
2025-06-12T04:56:17,821   !!

2025-06-12T04:56:17,822           ********************************************************************************
2025-06-12T04:56:17,823           ############################
2025-06-12T04:56:17,823           # Package would be ignored #
2025-06-12T04:56:17,824           ############################
2025-06-12T04:56:17,824           Python recognizes 'mitylib.config' as an importable package[^1],
2025-06-12T04:56:17,825           but it is absent from setuptools' `packages` configuration.

2025-06-12T04:56:17,826           This leads to an ambiguous overall configuration. If you want to distribute this
2025-06-12T04:56:17,826           package, please make sure that 'mitylib.config' is explicitly added
2025-06-12T04:56:17,827           to the `packages` configuration field.

2025-06-12T04:56:17,829           Alternatively, you can also rely on setuptools' discovery methods
2025-06-12T04:56:17,829           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-06-12T04:56:17,830           instead of `find_packages(...)`/`find:`).

2025-06-12T04:56:17,831           You can read more about "package discovery" on setuptools documentation page:

2025-06-12T04:56:17,832           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-06-12T04:56:17,833           If you don't want 'mitylib.config' to be distributed and are
2025-06-12T04:56:17,834           already explicitly excluding 'mitylib.config' via
2025-06-12T04:56:17,834           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-06-12T04:56:17,835           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-06-12T04:56:17,835           combination with a more fine grained `package-data` configuration.

2025-06-12T04:56:17,836           You can read more about "package data files" on setuptools documentation page:

2025-06-12T04:56:17,837           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-06-12T04:56:17,839           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-06-12T04:56:17,840                 even if it does not contain any `.py` files.
2025-06-12T04:56:17,840                 On the other hand, currently there is no concept of package data
2025-06-12T04:56:17,841                 directory, all directories are treated like packages.
2025-06-12T04:56:17,842           ********************************************************************************

2025-06-12T04:56:17,843   !!
2025-06-12T04:56:17,843     check.warn(importable)
2025-06-12T04:56:17,844   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'mitylib.reference' is absent from the `packages` configuration.
2025-06-12T04:56:17,845   !!

2025-06-12T04:56:17,846           ********************************************************************************
2025-06-12T04:56:17,846           ############################
2025-06-12T04:56:17,848           # Package would be ignored #
2025-06-12T04:56:17,849           ############################
2025-06-12T04:56:17,849           Python recognizes 'mitylib.reference' as an importable package[^1],
2025-06-12T04:56:17,850           but it is absent from setuptools' `packages` configuration.

2025-06-12T04:56:17,852           This leads to an ambiguous overall configuration. If you want to distribute this
2025-06-12T04:56:17,852           package, please make sure that 'mitylib.reference' is explicitly added
2025-06-12T04:56:17,853           to the `packages` configuration field.

2025-06-12T04:56:17,854           Alternatively, you can also rely on setuptools' discovery methods
2025-06-12T04:56:17,854           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-06-12T04:56:17,857           instead of `find_packages(...)`/`find:`).

2025-06-12T04:56:17,858           You can read more about "package discovery" on setuptools documentation page:

2025-06-12T04:56:17,859           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-06-12T04:56:17,860           If you don't want 'mitylib.reference' to be distributed and are
2025-06-12T04:56:17,860           already explicitly excluding 'mitylib.reference' via
2025-06-12T04:56:17,861           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-06-12T04:56:17,861           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-06-12T04:56:17,862           combination with a more fine grained `package-data` configuration.

2025-06-12T04:56:17,863           You can read more about "package data files" on setuptools documentation page:

2025-06-12T04:56:17,864           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-06-12T04:56:17,866           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-06-12T04:56:17,866                 even if it does not contain any `.py` files.
2025-06-12T04:56:17,867                 On the other hand, currently there is no concept of package data
2025-06-12T04:56:17,868                 directory, all directories are treated like packages.
2025-06-12T04:56:17,868           ********************************************************************************

2025-06-12T04:56:17,870   !!
2025-06-12T04:56:17,871     check.warn(importable)
2025-06-12T04:56:17,871   copying mitylib/mity -> build/lib/mitylib
2025-06-12T04:56:17,872   creating build/lib/mitylib/annot_chrm
2025-06-12T04:56:17,872   copying mitylib/annot_chrm/chrm_anticodon_positions.bed.gz -> build/lib/mitylib/annot_chrm
2025-06-12T04:56:17,873   copying mitylib/annot_chrm/chrm_anticodon_positions.bed.gz.tbi -> build/lib/mitylib/annot_chrm
2025-06-12T04:56:17,873   copying mitylib/annot_chrm/chrm_gtf_annotations.bed.gz -> build/lib/mitylib/annot_chrm
2025-06-12T04:56:17,874   copying mitylib/annot_chrm/chrm_gtf_annotations.bed.gz.tbi -> build/lib/mitylib/annot_chrm
2025-06-12T04:56:17,874   copying mitylib/annot_chrm/chrm_haplotype_data.vcf.gz -> build/lib/mitylib/annot_chrm
2025-06-12T04:56:17,875   copying mitylib/annot_chrm/chrm_haplotype_data.vcf.gz.tbi -> build/lib/mitylib/annot_chrm
2025-06-12T04:56:17,875   copying mitylib/annot_chrm/chrm_mgrb_variants.vcf.gz -> build/lib/mitylib/annot_chrm
2025-06-12T04:56:17,876   copying mitylib/annot_chrm/chrm_mgrb_variants.vcf.gz.tbi -> build/lib/mitylib/annot_chrm
2025-06-12T04:56:17,876   copying mitylib/annot_chrm/chrm_mito_dna_func_loc.bed.gz -> build/lib/mitylib/annot_chrm
2025-06-12T04:56:17,877   copying mitylib/annot_chrm/chrm_mito_dna_func_loc.bed.gz.tbi -> build/lib/mitylib/annot_chrm
2025-06-12T04:56:17,877   copying mitylib/annot_chrm/chrm_mitomap_confirmed_mutations.vcf.gz -> build/lib/mitylib/annot_chrm
2025-06-12T04:56:17,878   copying mitylib/annot_chrm/chrm_mitomap_confirmed_mutations.vcf.gz.tbi -> build/lib/mitylib/annot_chrm
2025-06-12T04:56:17,879   copying mitylib/annot_chrm/chrm_mitomap_disease.vcf.gz -> build/lib/mitylib/annot_chrm
2025-06-12T04:56:17,879   copying mitylib/annot_chrm/chrm_mitomap_disease.vcf.gz.tbi -> build/lib/mitylib/annot_chrm
2025-06-12T04:56:17,880   copying mitylib/annot_chrm/chrm_mitomap_mutations_coding_control.vcf.gz -> build/lib/mitylib/annot_chrm
2025-06-12T04:56:17,881   copying mitylib/annot_chrm/chrm_mitomap_mutations_coding_control.vcf.gz.tbi -> build/lib/mitylib/annot_chrm
2025-06-12T04:56:17,881   copying mitylib/annot_chrm/chrm_mitomap_mutations_rna.vcf.gz -> build/lib/mitylib/annot_chrm
2025-06-12T04:56:17,883   copying mitylib/annot_chrm/chrm_mitomap_mutations_rna.vcf.gz.tbi -> build/lib/mitylib/annot_chrm
2025-06-12T04:56:17,884   copying mitylib/annot_chrm/chrm_mitomap_polymorphisms.vcf.gz -> build/lib/mitylib/annot_chrm
2025-06-12T04:56:17,884   copying mitylib/annot_chrm/chrm_mitomap_polymorphisms.vcf.gz.tbi -> build/lib/mitylib/annot_chrm
2025-06-12T04:56:17,885   copying mitylib/annot_chrm/chrm_mitomap_variants_coding.vcf.gz -> build/lib/mitylib/annot_chrm
2025-06-12T04:56:17,885   copying mitylib/annot_chrm/chrm_mitomap_variants_coding.vcf.gz.tbi -> build/lib/mitylib/annot_chrm
2025-06-12T04:56:17,886   copying mitylib/annot_chrm/chrm_mitomap_variants_control.vcf.gz -> build/lib/mitylib/annot_chrm
2025-06-12T04:56:17,886   copying mitylib/annot_chrm/chrm_mitomap_variants_control.vcf.gz.tbi -> build/lib/mitylib/annot_chrm
2025-06-12T04:56:17,887   copying mitylib/annot_chrm/chrm_mitotip_scores.vcf.gz -> build/lib/mitylib/annot_chrm
2025-06-12T04:56:17,887   copying mitylib/annot_chrm/chrm_mitotip_scores.vcf.gz.tbi -> build/lib/mitylib/annot_chrm
2025-06-12T04:56:17,888   creating build/lib/mitylib/annot_mt
2025-06-12T04:56:17,889   copying mitylib/annot_mt/anticodon_positions.bed.gz -> build/lib/mitylib/annot_mt
2025-06-12T04:56:17,890   copying mitylib/annot_mt/anticodon_positions.bed.gz.tbi -> build/lib/mitylib/annot_mt
2025-06-12T04:56:17,890   copying mitylib/annot_mt/gtf_annotations.bed.gz -> build/lib/mitylib/annot_mt
2025-06-12T04:56:17,891   copying mitylib/annot_mt/gtf_annotations.bed.gz.tbi -> build/lib/mitylib/annot_mt
2025-06-12T04:56:17,891   copying mitylib/annot_mt/haplotype_data.vcf.gz -> build/lib/mitylib/annot_mt
2025-06-12T04:56:17,892   copying mitylib/annot_mt/haplotype_data.vcf.gz.tbi -> build/lib/mitylib/annot_mt
2025-06-12T04:56:17,893   copying mitylib/annot_mt/mgrb_variants.vcf.gz -> build/lib/mitylib/annot_mt
2025-06-12T04:56:17,896   copying mitylib/annot_mt/mgrb_variants.vcf.gz.tbi -> build/lib/mitylib/annot_mt
2025-06-12T04:56:17,898   copying mitylib/annot_mt/mito_dna_func_loc.bed.gz -> build/lib/mitylib/annot_mt
2025-06-12T04:56:17,903   copying mitylib/annot_mt/mito_dna_func_loc.bed.gz.tbi -> build/lib/mitylib/annot_mt
2025-06-12T04:56:17,905   copying mitylib/annot_mt/mitomap_confirmed_mutations.vcf.gz -> build/lib/mitylib/annot_mt
2025-06-12T04:56:17,907   copying mitylib/annot_mt/mitomap_confirmed_mutations.vcf.gz.tbi -> build/lib/mitylib/annot_mt
2025-06-12T04:56:17,910   copying mitylib/annot_mt/mitomap_disease.vcf.gz -> build/lib/mitylib/annot_mt
2025-06-12T04:56:17,913   copying mitylib/annot_mt/mitomap_disease.vcf.gz.tbi -> build/lib/mitylib/annot_mt
2025-06-12T04:56:17,915   copying mitylib/annot_mt/mitomap_mutations_coding_control.vcf.gz -> build/lib/mitylib/annot_mt
2025-06-12T04:56:17,918   copying mitylib/annot_mt/mitomap_mutations_coding_control.vcf.gz.tbi -> build/lib/mitylib/annot_mt
2025-06-12T04:56:17,920   copying mitylib/annot_mt/mitomap_mutations_rna.vcf.gz -> build/lib/mitylib/annot_mt
2025-06-12T04:56:17,923   copying mitylib/annot_mt/mitomap_mutations_rna.vcf.gz.tbi -> build/lib/mitylib/annot_mt
2025-06-12T04:56:17,925   copying mitylib/annot_mt/mitomap_polymorphisms.vcf.gz -> build/lib/mitylib/annot_mt
2025-06-12T04:56:17,930   copying mitylib/annot_mt/mitomap_polymorphisms.vcf.gz.tbi -> build/lib/mitylib/annot_mt
2025-06-12T04:56:17,932   copying mitylib/annot_mt/mitomap_variants_coding.vcf.gz -> build/lib/mitylib/annot_mt
2025-06-12T04:56:17,938   copying mitylib/annot_mt/mitomap_variants_coding.vcf.gz.tbi -> build/lib/mitylib/annot_mt
2025-06-12T04:56:17,940   copying mitylib/annot_mt/mitomap_variants_control.vcf.gz -> build/lib/mitylib/annot_mt
2025-06-12T04:56:17,943   copying mitylib/annot_mt/mitomap_variants_control.vcf.gz.tbi -> build/lib/mitylib/annot_mt
2025-06-12T04:56:17,946   copying mitylib/annot_mt/mitotip_scores.vcf.gz -> build/lib/mitylib/annot_mt
2025-06-12T04:56:17,949   copying mitylib/annot_mt/mitotip_scores.vcf.gz.tbi -> build/lib/mitylib/annot_mt
2025-06-12T04:56:17,951   creating build/lib/mitylib/config
2025-06-12T04:56:17,952   copying mitylib/config/report-config.yaml -> build/lib/mitylib/config
2025-06-12T04:56:17,955   copying mitylib/config/vcfanno-config-chrm.toml -> build/lib/mitylib/config
2025-06-12T04:56:17,957   copying mitylib/config/vcfanno-config-mt.toml -> build/lib/mitylib/config
2025-06-12T04:56:17,960   creating build/lib/mitylib/reference
2025-06-12T04:56:17,961   copying mitylib/reference/hg19.chrM.fa -> build/lib/mitylib/reference
2025-06-12T04:56:17,964   copying mitylib/reference/hg19.chrM.fa.fai -> build/lib/mitylib/reference
2025-06-12T04:56:17,966   copying mitylib/reference/hg19.dict -> build/lib/mitylib/reference
2025-06-12T04:56:17,968   copying mitylib/reference/hg19.genome -> build/lib/mitylib/reference
2025-06-12T04:56:17,971   copying mitylib/reference/hg38.chrM.fa -> build/lib/mitylib/reference
2025-06-12T04:56:17,973   copying mitylib/reference/hg38.chrM.fa.fai -> build/lib/mitylib/reference
2025-06-12T04:56:17,976   copying mitylib/reference/hg38.dict -> build/lib/mitylib/reference
2025-06-12T04:56:17,989   copying mitylib/reference/hg38.genome -> build/lib/mitylib/reference
2025-06-12T04:56:17,993   copying mitylib/reference/hs37d5.MT.fa -> build/lib/mitylib/reference
2025-06-12T04:56:17,996   copying mitylib/reference/hs37d5.MT.fa.fai -> build/lib/mitylib/reference
2025-06-12T04:56:17,998   copying mitylib/reference/hs37d5.dict -> build/lib/mitylib/reference
2025-06-12T04:56:18,000   copying mitylib/reference/hs37d5.genome -> build/lib/mitylib/reference
2025-06-12T04:56:18,003   copying mitylib/reference/mm10.chrM.fa -> build/lib/mitylib/reference
2025-06-12T04:56:18,005   copying mitylib/reference/mm10.chrM.fa.fai -> build/lib/mitylib/reference
2025-06-12T04:56:18,008   copying mitylib/reference/mm10.genome -> build/lib/mitylib/reference
2025-06-12T04:56:18,011   running build_scripts
2025-06-12T04:56:18,011   creating build/scripts-3.11
2025-06-12T04:56:18,013   copying and adjusting mitylib/mity -> build/scripts-3.11
2025-06-12T04:56:18,014   changing mode of build/scripts-3.11/mity from 644 to 755
2025-06-12T04:56:18,042   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-06-12T04:56:18,042   !!

2025-06-12T04:56:18,044           ********************************************************************************
2025-06-12T04:56:18,044           Please avoid running ``setup.py`` directly.
2025-06-12T04:56:18,045           Instead, use pypa/build, pypa/installer or other
2025-06-12T04:56:18,045           standards-based tools.

2025-06-12T04:56:18,047           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-06-12T04:56:18,047           or your builds will no longer be supported.

2025-06-12T04:56:18,049           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-06-12T04:56:18,049           ********************************************************************************

2025-06-12T04:56:18,050   !!
2025-06-12T04:56:18,051     self.initialize_options()
2025-06-12T04:56:18,070   installing to build/bdist.linux-armv7l/wheel
2025-06-12T04:56:18,071   running install
2025-06-12T04:56:18,094   running install_lib
2025-06-12T04:56:18,122   creating build/bdist.linux-armv7l/wheel
2025-06-12T04:56:18,124   creating build/bdist.linux-armv7l/wheel/mitylib
2025-06-12T04:56:18,125   copying build/lib/mitylib/_version.py -> build/bdist.linux-armv7l/wheel/./mitylib
2025-06-12T04:56:18,128   creating build/bdist.linux-armv7l/wheel/mitylib/annot_mt
2025-06-12T04:56:18,129   copying build/lib/mitylib/annot_mt/mitotip_scores.vcf.gz -> build/bdist.linux-armv7l/wheel/./mitylib/annot_mt
2025-06-12T04:56:18,132   copying build/lib/mitylib/annot_mt/mitotip_scores.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/./mitylib/annot_mt
2025-06-12T04:56:18,134   copying build/lib/mitylib/annot_mt/mitomap_variants_control.vcf.gz -> build/bdist.linux-armv7l/wheel/./mitylib/annot_mt
2025-06-12T04:56:18,137   copying build/lib/mitylib/annot_mt/mitomap_variants_coding.vcf.gz -> build/bdist.linux-armv7l/wheel/./mitylib/annot_mt
2025-06-12T04:56:18,143   copying build/lib/mitylib/annot_mt/mitomap_mutations_coding_control.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/./mitylib/annot_mt
2025-06-12T04:56:18,144   copying build/lib/mitylib/annot_mt/mitomap_mutations_rna.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/./mitylib/annot_mt
2025-06-12T04:56:18,146   copying build/lib/mitylib/annot_mt/mitomap_confirmed_mutations.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/./mitylib/annot_mt
2025-06-12T04:56:18,148   copying build/lib/mitylib/annot_mt/mitomap_polymorphisms.vcf.gz -> build/bdist.linux-armv7l/wheel/./mitylib/annot_mt
2025-06-12T04:56:18,152   copying build/lib/mitylib/annot_mt/mito_dna_func_loc.bed.gz -> build/bdist.linux-armv7l/wheel/./mitylib/annot_mt
2025-06-12T04:56:18,156   copying build/lib/mitylib/annot_mt/haplotype_data.vcf.gz -> build/bdist.linux-armv7l/wheel/./mitylib/annot_mt
2025-06-12T04:56:18,158   copying build/lib/mitylib/annot_mt/mitomap_variants_coding.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/./mitylib/annot_mt
2025-06-12T04:56:18,160   copying build/lib/mitylib/annot_mt/mitomap_confirmed_mutations.vcf.gz -> build/bdist.linux-armv7l/wheel/./mitylib/annot_mt
2025-06-12T04:56:18,163   copying build/lib/mitylib/annot_mt/anticodon_positions.bed.gz.tbi -> build/bdist.linux-armv7l/wheel/./mitylib/annot_mt
2025-06-12T04:56:18,164   copying build/lib/mitylib/annot_mt/mito_dna_func_loc.bed.gz.tbi -> build/bdist.linux-armv7l/wheel/./mitylib/annot_mt
2025-06-12T04:56:18,166   copying build/lib/mitylib/annot_mt/mgrb_variants.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/./mitylib/annot_mt
2025-06-12T04:56:18,168   copying build/lib/mitylib/annot_mt/anticodon_positions.bed.gz -> build/bdist.linux-armv7l/wheel/./mitylib/annot_mt
2025-06-12T04:56:18,170   copying build/lib/mitylib/annot_mt/gtf_annotations.bed.gz -> build/bdist.linux-armv7l/wheel/./mitylib/annot_mt
2025-06-12T04:56:18,174   copying build/lib/mitylib/annot_mt/mitomap_polymorphisms.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/./mitylib/annot_mt
2025-06-12T04:56:18,175   copying build/lib/mitylib/annot_mt/mitomap_variants_control.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/./mitylib/annot_mt
2025-06-12T04:56:18,177   copying build/lib/mitylib/annot_mt/gtf_annotations.bed.gz.tbi -> build/bdist.linux-armv7l/wheel/./mitylib/annot_mt
2025-06-12T04:56:18,179   copying build/lib/mitylib/annot_mt/mitomap_disease.vcf.gz -> build/bdist.linux-armv7l/wheel/./mitylib/annot_mt
2025-06-12T04:56:18,183   copying build/lib/mitylib/annot_mt/mitomap_mutations_rna.vcf.gz -> build/bdist.linux-armv7l/wheel/./mitylib/annot_mt
2025-06-12T04:56:18,185   copying build/lib/mitylib/annot_mt/mitomap_disease.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/./mitylib/annot_mt
2025-06-12T04:56:18,187   copying build/lib/mitylib/annot_mt/haplotype_data.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/./mitylib/annot_mt
2025-06-12T04:56:18,189   copying build/lib/mitylib/annot_mt/mitomap_mutations_coding_control.vcf.gz -> build/bdist.linux-armv7l/wheel/./mitylib/annot_mt
2025-06-12T04:56:18,192   copying build/lib/mitylib/annot_mt/mgrb_variants.vcf.gz -> build/bdist.linux-armv7l/wheel/./mitylib/annot_mt
2025-06-12T04:56:18,195   creating build/bdist.linux-armv7l/wheel/mitylib/config
2025-06-12T04:56:18,196   copying build/lib/mitylib/config/report-config.yaml -> build/bdist.linux-armv7l/wheel/./mitylib/config
2025-06-12T04:56:18,199   copying build/lib/mitylib/config/vcfanno-config-mt.toml -> build/bdist.linux-armv7l/wheel/./mitylib/config
2025-06-12T04:56:18,201   copying build/lib/mitylib/config/vcfanno-config-chrm.toml -> build/bdist.linux-armv7l/wheel/./mitylib/config
2025-06-12T04:56:18,203   copying build/lib/mitylib/commands.py -> build/bdist.linux-armv7l/wheel/./mitylib
2025-06-12T04:56:18,206   copying build/lib/mitylib/merge.py -> build/bdist.linux-armv7l/wheel/./mitylib
2025-06-12T04:56:18,208   copying build/lib/mitylib/report.py -> build/bdist.linux-armv7l/wheel/./mitylib
2025-06-12T04:56:18,211   copying build/lib/mitylib/__init__.py -> build/bdist.linux-armv7l/wheel/./mitylib
2025-06-12T04:56:18,212   copying build/lib/mitylib/mity -> build/bdist.linux-armv7l/wheel/./mitylib
2025-06-12T04:56:18,215   creating build/bdist.linux-armv7l/wheel/mitylib/annot_chrm
2025-06-12T04:56:18,216   copying build/lib/mitylib/annot_chrm/chrm_mitomap_polymorphisms.vcf.gz -> build/bdist.linux-armv7l/wheel/./mitylib/annot_chrm
2025-06-12T04:56:18,220   copying build/lib/mitylib/annot_chrm/chrm_mitomap_disease.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/./mitylib/annot_chrm
2025-06-12T04:56:18,222   copying build/lib/mitylib/annot_chrm/chrm_mgrb_variants.vcf.gz -> build/bdist.linux-armv7l/wheel/./mitylib/annot_chrm
2025-06-12T04:56:18,224   copying build/lib/mitylib/annot_chrm/chrm_mitomap_variants_coding.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/./mitylib/annot_chrm
2025-06-12T04:56:18,226   copying build/lib/mitylib/annot_chrm/chrm_gtf_annotations.bed.gz -> build/bdist.linux-armv7l/wheel/./mitylib/annot_chrm
2025-06-12T04:56:18,229   copying build/lib/mitylib/annot_chrm/chrm_mitomap_confirmed_mutations.vcf.gz -> build/bdist.linux-armv7l/wheel/./mitylib/annot_chrm
2025-06-12T04:56:18,231   copying build/lib/mitylib/annot_chrm/chrm_mito_dna_func_loc.bed.gz -> build/bdist.linux-armv7l/wheel/./mitylib/annot_chrm
2025-06-12T04:56:18,235   copying build/lib/mitylib/annot_chrm/chrm_mitomap_mutations_coding_control.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/./mitylib/annot_chrm
2025-06-12T04:56:18,236   copying build/lib/mitylib/annot_chrm/chrm_mgrb_variants.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/./mitylib/annot_chrm
2025-06-12T04:56:18,238   copying build/lib/mitylib/annot_chrm/chrm_mitomap_polymorphisms.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/./mitylib/annot_chrm
2025-06-12T04:56:18,240   copying build/lib/mitylib/annot_chrm/chrm_mitomap_mutations_rna.vcf.gz -> build/bdist.linux-armv7l/wheel/./mitylib/annot_chrm
2025-06-12T04:56:18,243   copying build/lib/mitylib/annot_chrm/chrm_haplotype_data.vcf.gz -> build/bdist.linux-armv7l/wheel/./mitylib/annot_chrm
2025-06-12T04:56:18,246   copying build/lib/mitylib/annot_chrm/chrm_mitomap_mutations_rna.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/./mitylib/annot_chrm
2025-06-12T04:56:18,248   copying build/lib/mitylib/annot_chrm/chrm_mitomap_variants_control.vcf.gz -> build/bdist.linux-armv7l/wheel/./mitylib/annot_chrm
2025-06-12T04:56:18,250   copying build/lib/mitylib/annot_chrm/chrm_mitomap_confirmed_mutations.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/./mitylib/annot_chrm
2025-06-12T04:56:18,252   copying build/lib/mitylib/annot_chrm/chrm_mitomap_variants_control.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/./mitylib/annot_chrm
2025-06-12T04:56:18,254   copying build/lib/mitylib/annot_chrm/chrm_mitomap_variants_coding.vcf.gz -> build/bdist.linux-armv7l/wheel/./mitylib/annot_chrm
2025-06-12T04:56:18,261   copying build/lib/mitylib/annot_chrm/chrm_anticodon_positions.bed.gz -> build/bdist.linux-armv7l/wheel/./mitylib/annot_chrm
2025-06-12T04:56:18,263   copying build/lib/mitylib/annot_chrm/chrm_mitomap_disease.vcf.gz -> build/bdist.linux-armv7l/wheel/./mitylib/annot_chrm
2025-06-12T04:56:18,266   copying build/lib/mitylib/annot_chrm/chrm_mitomap_mutations_coding_control.vcf.gz -> build/bdist.linux-armv7l/wheel/./mitylib/annot_chrm
2025-06-12T04:56:18,268   copying build/lib/mitylib/annot_chrm/chrm_gtf_annotations.bed.gz.tbi -> build/bdist.linux-armv7l/wheel/./mitylib/annot_chrm
2025-06-12T04:56:18,270   copying build/lib/mitylib/annot_chrm/chrm_mitotip_scores.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/./mitylib/annot_chrm
2025-06-12T04:56:18,272   copying build/lib/mitylib/annot_chrm/chrm_anticodon_positions.bed.gz.tbi -> build/bdist.linux-armv7l/wheel/./mitylib/annot_chrm
2025-06-12T04:56:18,274   copying build/lib/mitylib/annot_chrm/chrm_mito_dna_func_loc.bed.gz.tbi -> build/bdist.linux-armv7l/wheel/./mitylib/annot_chrm
2025-06-12T04:56:18,276   copying build/lib/mitylib/annot_chrm/chrm_mitotip_scores.vcf.gz -> build/bdist.linux-armv7l/wheel/./mitylib/annot_chrm
2025-06-12T04:56:18,279   copying build/lib/mitylib/annot_chrm/chrm_haplotype_data.vcf.gz.tbi -> build/bdist.linux-armv7l/wheel/./mitylib/annot_chrm
2025-06-12T04:56:18,281   creating build/bdist.linux-armv7l/wheel/mitylib/reference
2025-06-12T04:56:18,282   copying build/lib/mitylib/reference/hg38.genome -> build/bdist.linux-armv7l/wheel/./mitylib/reference
2025-06-12T04:56:18,286   copying build/lib/mitylib/reference/hs37d5.MT.fa.fai -> build/bdist.linux-armv7l/wheel/./mitylib/reference
2025-06-12T04:56:18,288   copying build/lib/mitylib/reference/hg38.chrM.fa -> build/bdist.linux-armv7l/wheel/./mitylib/reference
2025-06-12T04:56:18,291   copying build/lib/mitylib/reference/hg19.dict -> build/bdist.linux-armv7l/wheel/./mitylib/reference
2025-06-12T04:56:18,293   copying build/lib/mitylib/reference/hg19.chrM.fa -> build/bdist.linux-armv7l/wheel/./mitylib/reference
2025-06-12T04:56:18,296   copying build/lib/mitylib/reference/mm10.chrM.fa -> build/bdist.linux-armv7l/wheel/./mitylib/reference
2025-06-12T04:56:18,298   copying build/lib/mitylib/reference/hs37d5.dict -> build/bdist.linux-armv7l/wheel/./mitylib/reference
2025-06-12T04:56:18,301   copying build/lib/mitylib/reference/hg19.chrM.fa.fai -> build/bdist.linux-armv7l/wheel/./mitylib/reference
2025-06-12T04:56:18,302   copying build/lib/mitylib/reference/hs37d5.MT.fa -> build/bdist.linux-armv7l/wheel/./mitylib/reference
2025-06-12T04:56:18,305   copying build/lib/mitylib/reference/hg38.dict -> build/bdist.linux-armv7l/wheel/./mitylib/reference
2025-06-12T04:56:18,317   copying build/lib/mitylib/reference/hg19.genome -> build/bdist.linux-armv7l/wheel/./mitylib/reference
2025-06-12T04:56:18,319   copying build/lib/mitylib/reference/hg38.chrM.fa.fai -> build/bdist.linux-armv7l/wheel/./mitylib/reference
2025-06-12T04:56:18,321   copying build/lib/mitylib/reference/mm10.genome -> build/bdist.linux-armv7l/wheel/./mitylib/reference
2025-06-12T04:56:18,323   copying build/lib/mitylib/reference/hs37d5.genome -> build/bdist.linux-armv7l/wheel/./mitylib/reference
2025-06-12T04:56:18,325   copying build/lib/mitylib/reference/mm10.chrM.fa.fai -> build/bdist.linux-armv7l/wheel/./mitylib/reference
2025-06-12T04:56:18,327   copying build/lib/mitylib/util.py -> build/bdist.linux-armv7l/wheel/./mitylib
2025-06-12T04:56:18,330   copying build/lib/mitylib/normalise.py -> build/bdist.linux-armv7l/wheel/./mitylib
2025-06-12T04:56:18,332   copying build/lib/mitylib/call.py -> build/bdist.linux-armv7l/wheel/./mitylib
2025-06-12T04:56:18,334   running install_egg_info
2025-06-12T04:56:18,369   Copying mitywgs.egg-info to build/bdist.linux-armv7l/wheel/./mitywgs-2.0.0-py3.11.egg-info
2025-06-12T04:56:18,379   running install_scripts
2025-06-12T04:56:18,380   creating build/bdist.linux-armv7l/wheel/mitywgs-2.0.0.data/scripts
2025-06-12T04:56:18,382   copying build/scripts-3.11/mity -> build/bdist.linux-armv7l/wheel/mitywgs-2.0.0.data/scripts
2025-06-12T04:56:18,383   changing mode of build/bdist.linux-armv7l/wheel/mitywgs-2.0.0.data/scripts/mity to 755
2025-06-12T04:56:18,395   creating build/bdist.linux-armv7l/wheel/mitywgs-2.0.0.dist-info/WHEEL
2025-06-12T04:56:18,397   creating '/tmp/pip-wheel-m809ymuf/mitywgs-2.0.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-06-12T04:56:18,399   adding 'mitylib/__init__.py'
2025-06-12T04:56:18,401   adding 'mitylib/_version.py'
2025-06-12T04:56:18,403   adding 'mitylib/call.py'
2025-06-12T04:56:18,406   adding 'mitylib/commands.py'
2025-06-12T04:56:18,408   adding 'mitylib/merge.py'
2025-06-12T04:56:18,409   adding 'mitylib/mity'
2025-06-12T04:56:18,411   adding 'mitylib/normalise.py'
2025-06-12T04:56:18,414   adding 'mitylib/report.py'
2025-06-12T04:56:18,416   adding 'mitylib/util.py'
2025-06-12T04:56:18,418   adding 'mitylib/annot_chrm/chrm_anticodon_positions.bed.gz'
2025-06-12T04:56:18,419   adding 'mitylib/annot_chrm/chrm_anticodon_positions.bed.gz.tbi'
2025-06-12T04:56:18,424   adding 'mitylib/annot_chrm/chrm_gtf_annotations.bed.gz'
2025-06-12T04:56:18,426   adding 'mitylib/annot_chrm/chrm_gtf_annotations.bed.gz.tbi'
2025-06-12T04:56:18,431   adding 'mitylib/annot_chrm/chrm_haplotype_data.vcf.gz'
2025-06-12T04:56:18,433   adding 'mitylib/annot_chrm/chrm_haplotype_data.vcf.gz.tbi'
2025-06-12T04:56:18,436   adding 'mitylib/annot_chrm/chrm_mgrb_variants.vcf.gz'
2025-06-12T04:56:18,437   adding 'mitylib/annot_chrm/chrm_mgrb_variants.vcf.gz.tbi'
2025-06-12T04:56:18,443   adding 'mitylib/annot_chrm/chrm_mito_dna_func_loc.bed.gz'
2025-06-12T04:56:18,445   adding 'mitylib/annot_chrm/chrm_mito_dna_func_loc.bed.gz.tbi'
2025-06-12T04:56:18,447   adding 'mitylib/annot_chrm/chrm_mitomap_confirmed_mutations.vcf.gz'
2025-06-12T04:56:18,448   adding 'mitylib/annot_chrm/chrm_mitomap_confirmed_mutations.vcf.gz.tbi'
2025-06-12T04:56:18,453   adding 'mitylib/annot_chrm/chrm_mitomap_disease.vcf.gz'
2025-06-12T04:56:18,455   adding 'mitylib/annot_chrm/chrm_mitomap_disease.vcf.gz.tbi'
2025-06-12T04:56:18,458   adding 'mitylib/annot_chrm/chrm_mitomap_mutations_coding_control.vcf.gz'
2025-06-12T04:56:18,459   adding 'mitylib/annot_chrm/chrm_mitomap_mutations_coding_control.vcf.gz.tbi'
2025-06-12T04:56:18,461   adding 'mitylib/annot_chrm/chrm_mitomap_mutations_rna.vcf.gz'
2025-06-12T04:56:18,462   adding 'mitylib/annot_chrm/chrm_mitomap_mutations_rna.vcf.gz.tbi'
2025-06-12T04:56:18,475   adding 'mitylib/annot_chrm/chrm_mitomap_polymorphisms.vcf.gz'
2025-06-12T04:56:18,478   adding 'mitylib/annot_chrm/chrm_mitomap_polymorphisms.vcf.gz.tbi'
2025-06-12T04:56:18,498   adding 'mitylib/annot_chrm/chrm_mitomap_variants_coding.vcf.gz'
2025-06-12T04:56:18,500   adding 'mitylib/annot_chrm/chrm_mitomap_variants_coding.vcf.gz.tbi'
2025-06-12T04:56:18,507   adding 'mitylib/annot_chrm/chrm_mitomap_variants_control.vcf.gz'
2025-06-12T04:56:18,508   adding 'mitylib/annot_chrm/chrm_mitomap_variants_control.vcf.gz.tbi'
2025-06-12T04:56:18,514   adding 'mitylib/annot_chrm/chrm_mitotip_scores.vcf.gz'
2025-06-12T04:56:18,515   adding 'mitylib/annot_chrm/chrm_mitotip_scores.vcf.gz.tbi'
2025-06-12T04:56:18,517   adding 'mitylib/annot_mt/anticodon_positions.bed.gz'
2025-06-12T04:56:18,518   adding 'mitylib/annot_mt/anticodon_positions.bed.gz.tbi'
2025-06-12T04:56:18,523   adding 'mitylib/annot_mt/gtf_annotations.bed.gz'
2025-06-12T04:56:18,524   adding 'mitylib/annot_mt/gtf_annotations.bed.gz.tbi'
2025-06-12T04:56:18,529   adding 'mitylib/annot_mt/haplotype_data.vcf.gz'
2025-06-12T04:56:18,531   adding 'mitylib/annot_mt/haplotype_data.vcf.gz.tbi'
2025-06-12T04:56:18,534   adding 'mitylib/annot_mt/mgrb_variants.vcf.gz'
2025-06-12T04:56:18,535   adding 'mitylib/annot_mt/mgrb_variants.vcf.gz.tbi'
2025-06-12T04:56:18,541   adding 'mitylib/annot_mt/mito_dna_func_loc.bed.gz'
2025-06-12T04:56:18,542   adding 'mitylib/annot_mt/mito_dna_func_loc.bed.gz.tbi'
2025-06-12T04:56:18,544   adding 'mitylib/annot_mt/mitomap_confirmed_mutations.vcf.gz'
2025-06-12T04:56:18,545   adding 'mitylib/annot_mt/mitomap_confirmed_mutations.vcf.gz.tbi'
2025-06-12T04:56:18,551   adding 'mitylib/annot_mt/mitomap_disease.vcf.gz'
2025-06-12T04:56:18,552   adding 'mitylib/annot_mt/mitomap_disease.vcf.gz.tbi'
2025-06-12T04:56:18,555   adding 'mitylib/annot_mt/mitomap_mutations_coding_control.vcf.gz'
2025-06-12T04:56:18,556   adding 'mitylib/annot_mt/mitomap_mutations_coding_control.vcf.gz.tbi'
2025-06-12T04:56:18,558   adding 'mitylib/annot_mt/mitomap_mutations_rna.vcf.gz'
2025-06-12T04:56:18,559   adding 'mitylib/annot_mt/mitomap_mutations_rna.vcf.gz.tbi'
2025-06-12T04:56:18,572   adding 'mitylib/annot_mt/mitomap_polymorphisms.vcf.gz'
2025-06-12T04:56:18,574   adding 'mitylib/annot_mt/mitomap_polymorphisms.vcf.gz.tbi'
2025-06-12T04:56:18,595   adding 'mitylib/annot_mt/mitomap_variants_coding.vcf.gz'
2025-06-12T04:56:18,597   adding 'mitylib/annot_mt/mitomap_variants_coding.vcf.gz.tbi'
2025-06-12T04:56:18,604   adding 'mitylib/annot_mt/mitomap_variants_control.vcf.gz'
2025-06-12T04:56:18,605   adding 'mitylib/annot_mt/mitomap_variants_control.vcf.gz.tbi'
2025-06-12T04:56:18,610   adding 'mitylib/annot_mt/mitotip_scores.vcf.gz'
2025-06-12T04:56:18,612   adding 'mitylib/annot_mt/mitotip_scores.vcf.gz.tbi'
2025-06-12T04:56:18,614   adding 'mitylib/config/report-config.yaml'
2025-06-12T04:56:18,615   adding 'mitylib/config/vcfanno-config-chrm.toml'
2025-06-12T04:56:18,617   adding 'mitylib/config/vcfanno-config-mt.toml'
2025-06-12T04:56:18,625   adding 'mitylib/reference/hg19.chrM.fa'
2025-06-12T04:56:18,626   adding 'mitylib/reference/hg19.chrM.fa.fai'
2025-06-12T04:56:18,628   adding 'mitylib/reference/hg19.dict'
2025-06-12T04:56:18,630   adding 'mitylib/reference/hg19.genome'
2025-06-12T04:56:18,638   adding 'mitylib/reference/hg38.chrM.fa'
2025-06-12T04:56:18,639   adding 'mitylib/reference/hg38.chrM.fa.fai'
2025-06-12T04:56:18,674   adding 'mitylib/reference/hg38.dict'
2025-06-12T04:56:18,687   adding 'mitylib/reference/hg38.genome'
2025-06-12T04:56:18,696   adding 'mitylib/reference/hs37d5.MT.fa'
2025-06-12T04:56:18,697   adding 'mitylib/reference/hs37d5.MT.fa.fai'
2025-06-12T04:56:18,699   adding 'mitylib/reference/hs37d5.dict'
2025-06-12T04:56:18,700   adding 'mitylib/reference/hs37d5.genome'
2025-06-12T04:56:18,708   adding 'mitylib/reference/mm10.chrM.fa'
2025-06-12T04:56:18,716   adding 'mitylib/reference/mm10.chrM.fa.fai'
2025-06-12T04:56:18,718   adding 'mitylib/reference/mm10.genome'
2025-06-12T04:56:18,720   adding 'mitywgs-2.0.0.data/scripts/mity'
2025-06-12T04:56:18,722   adding 'mitywgs-2.0.0.dist-info/licenses/LICENSE.txt'
2025-06-12T04:56:18,724   adding 'mitywgs-2.0.0.dist-info/METADATA'
2025-06-12T04:56:18,725   adding 'mitywgs-2.0.0.dist-info/WHEEL'
2025-06-12T04:56:18,726   adding 'mitywgs-2.0.0.dist-info/top_level.txt'
2025-06-12T04:56:18,728   adding 'mitywgs-2.0.0.dist-info/RECORD'
2025-06-12T04:56:18,744   removing build/bdist.linux-armv7l/wheel
2025-06-12T04:56:18,878   Building wheel for mitywgs (setup.py): finished with status 'done'
2025-06-12T04:56:18,895   Created wheel for mitywgs: filename=mitywgs-2.0.0-py3-none-any.whl size=1398216 sha256=b8ba9d38d507cd0c23ec57a2645bf52e37165d0b7fb798a16065962ad9487cdc
2025-06-12T04:56:18,896   Stored in directory: /tmp/pip-ephem-wheel-cache-xthwba8k/wheels/8e/4f/b4/8a6a993a86583a52b0072b97fe9935f0789b8d9c5eb4c5d0e3
2025-06-12T04:56:18,913 Successfully built mitywgs
2025-06-12T04:56:18,958 Removed build tracker: '/tmp/pip-build-tracker-5dgp0scf'