2025-05-30T05:09:24,881 Created temporary directory: /tmp/pip-build-tracker-psi8lb3p 2025-05-30T05:09:24,883 Initialized build tracking at /tmp/pip-build-tracker-psi8lb3p 2025-05-30T05:09:24,883 Created build tracker: /tmp/pip-build-tracker-psi8lb3p 2025-05-30T05:09:24,884 Entered build tracker: /tmp/pip-build-tracker-psi8lb3p 2025-05-30T05:09:24,884 Created temporary directory: /tmp/pip-wheel-bdc285an 2025-05-30T05:09:24,888 Created temporary directory: /tmp/pip-ephem-wheel-cache-rogru_f9 2025-05-30T05:09:24,935 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-05-30T05:09:24,937 2 location(s) to search for versions of hubmap-commons: 2025-05-30T05:09:24,937 * https://pypi.org/simple/hubmap-commons/ 2025-05-30T05:09:24,937 * https://www.piwheels.org/simple/hubmap-commons/ 2025-05-30T05:09:24,938 Fetching project page and analyzing links: https://pypi.org/simple/hubmap-commons/ 2025-05-30T05:09:24,939 Getting page https://pypi.org/simple/hubmap-commons/ 2025-05-30T05:09:24,940 Found index url https://pypi.org/simple/ 2025-05-30T05:09:25,161 Fetched page https://pypi.org/simple/hubmap-commons/ as application/vnd.pypi.simple.v1+json 2025-05-30T05:09:25,169 Found link https://files.pythonhosted.org/packages/87/39/f39f50e39cc84a7e43ed114a19fac8f50bcc48c7e4a7262fdcfb345be58f/hubmap-commons-2.0.11.tar.gz (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6), version: 2.0.11 2025-05-30T05:09:25,169 Skipping link: No binaries permitted for hubmap-commons: https://files.pythonhosted.org/packages/9b/70/bb768c2e37a99e882d7cde9886f5071eaa5e49cffca8e28b702ab653b053/hubmap_commons-2.0.11-py3-none-any.whl (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6) 2025-05-30T05:09:25,170 Found link https://files.pythonhosted.org/packages/6c/9e/e288908d5e43587b316003c61ea32d0f4fa7c2a904a0a4613ad1854c09b7/hubmap-commons-2.0.12.tar.gz (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6), version: 2.0.12 2025-05-30T05:09:25,170 Skipping link: No binaries permitted for hubmap-commons: https://files.pythonhosted.org/packages/3f/49/6666cc2c4fe16a75a177d27a240d66933a903087f948f59062105c0602d5/hubmap_commons-2.0.12-py3-none-any.whl (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6) 2025-05-30T05:09:25,171 Found link https://files.pythonhosted.org/packages/fb/87/4e48d9c6ccacb283f4371b19e4121d3c301be412fe8d9fdef279e91de059/hubmap-commons-2.0.13.tar.gz (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6), version: 2.0.13 2025-05-30T05:09:25,172 Skipping link: No binaries permitted for hubmap-commons: https://files.pythonhosted.org/packages/0b/15/1d3d930baf7544acd71fe07e069ca98b20b14982c1e1ecf22c409fef41b8/hubmap_commons-2.0.13-py3-none-any.whl (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6) 2025-05-30T05:09:25,173 Found link https://files.pythonhosted.org/packages/e2/7d/1166bfe601a0f471badd838a76c84acb0cbb49788d7d3ea6d6f0da2c1c69/hubmap-commons-2.0.14.tar.gz (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6), version: 2.0.14 2025-05-30T05:09:25,174 Skipping link: No binaries permitted for hubmap-commons: https://files.pythonhosted.org/packages/3e/08/7495eb35a64d7c57ec0e0d412433815fe7443a67c620ff85a139332469fd/hubmap_commons-2.0.14-py3-none-any.whl (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6) 2025-05-30T05:09:25,174 Found link https://files.pythonhosted.org/packages/e2/5e/5a3ff30b29f00e36e575dbb5840c26f1c4365fa49212415e2c18f0d1b5d2/hubmap-commons-2.0.15.tar.gz (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6), version: 2.0.15 2025-05-30T05:09:25,175 Skipping link: No binaries permitted for hubmap-commons: https://files.pythonhosted.org/packages/ab/45/917c7a6658bfc054087720f01626504a58f28a26005ecce9a2f6747e12f3/hubmap_commons-2.0.15-py3-none-any.whl (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6) 2025-05-30T05:09:25,176 Found link https://files.pythonhosted.org/packages/09/5c/e2ef903810fa51de31931562d2593ef874fcd6b15471160dd725d8433bbd/hubmap-commons-2.1.0.tar.gz (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6), version: 2.1.0 2025-05-30T05:09:25,176 Skipping link: No binaries permitted for hubmap-commons: https://files.pythonhosted.org/packages/fa/0c/8674b5a4054b7c03636c8332f50884d463a27c5bf3d474eed3be18fdd551/hubmap_commons-2.1.0-py3-none-any.whl (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6) 2025-05-30T05:09:25,177 Found link https://files.pythonhosted.org/packages/9e/ea/23e9bb0dc704938ddc625027c9c2d642396c19612ea3da6f359028aa36fa/hubmap-commons-2.1.1.tar.gz (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6), version: 2.1.1 2025-05-30T05:09:25,178 Skipping link: No binaries permitted for hubmap-commons: https://files.pythonhosted.org/packages/4d/8c/a63d3109e40b3e3a591fae01bb9835a8c58b26549f49544dce9e195034fe/hubmap_commons-2.1.1-py3-none-any.whl (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6) 2025-05-30T05:09:25,178 Found link https://files.pythonhosted.org/packages/fc/1f/5c127b6c80abc737a1500393b8f418b32a7d8214905acccb20b090474a93/hubmap-commons-2.1.2.tar.gz (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6), version: 2.1.2 2025-05-30T05:09:25,179 Skipping link: No binaries permitted for hubmap-commons: https://files.pythonhosted.org/packages/5e/5f/16914a0d40690cc2bc17431e9d71dd093a42daa34dcc18167f621a1baf7a/hubmap_commons-2.1.2-py3-none-any.whl (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6) 2025-05-30T05:09:25,179 Found link https://files.pythonhosted.org/packages/f6/cc/e1a207f5db67d8e03d7fc9a2c72389c47c570e38e2da1d0c7aa1da42ba06/hubmap-commons-2.1.3.tar.gz (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6), version: 2.1.3 2025-05-30T05:09:25,180 Skipping link: No binaries permitted for hubmap-commons: https://files.pythonhosted.org/packages/ec/02/3fdc7207298ea1d6d64f0362dab59e0ed9fb5d55c5e0a41846825445b556/hubmap_commons-2.1.3-py3-none-any.whl (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6) 2025-05-30T05:09:25,181 Found link https://files.pythonhosted.org/packages/90/8e/fbaed89cdde4e9714063cc43be4ca903990847f0fd61295dc31d5307b95f/hubmap-commons-2.1.4.tar.gz (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6), version: 2.1.4 2025-05-30T05:09:25,181 Skipping link: No binaries permitted for hubmap-commons: https://files.pythonhosted.org/packages/cb/80/0d4f378e93883353e06a7ffc2f723a84ed4140c1b32973bf72cb451af6e5/hubmap_commons-2.1.4-py3-none-any.whl (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6) 2025-05-30T05:09:25,182 Found link https://files.pythonhosted.org/packages/24/2f/37b5c3f91c2c77500e821dc3df22c40b845afff7a82322de22256325c82a/hubmap-commons-2.1.5.tar.gz (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6), version: 2.1.5 2025-05-30T05:09:25,183 Skipping link: No binaries permitted for hubmap-commons: https://files.pythonhosted.org/packages/62/20/c90bad2dee0fceb968c2159fc078260a611d36582a9322ea746464959ce4/hubmap_commons-2.1.5-py3-none-any.whl (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6) 2025-05-30T05:09:25,184 Found link https://files.pythonhosted.org/packages/60/09/f19c4f92f3ef74685adccd1b59b544cf4c193cc1707409b1d4f32691c91f/hubmap-commons-2.1.6.tar.gz (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6), version: 2.1.6 2025-05-30T05:09:25,184 Skipping link: No binaries permitted for hubmap-commons: https://files.pythonhosted.org/packages/13/67/6f550e0a8921fe39f1a1cde048c598d612c2673aadde242cdb93d2c3de9c/hubmap_commons-2.1.6-py3-none-any.whl (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6) 2025-05-30T05:09:25,185 Found link https://files.pythonhosted.org/packages/cc/6a/3abb2a2332dc3ec7f360018ad436f2c8f8d0cba86fc99e1b312a052bb2b5/hubmap-commons-2.1.7.tar.gz (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6), version: 2.1.7 2025-05-30T05:09:25,185 Skipping link: No binaries permitted for hubmap-commons: https://files.pythonhosted.org/packages/d4/ab/1b8ffa16e6ae7d8d3cb32a8e2885fae087c8c81774a545daa2175c1dd9a8/hubmap_commons-2.1.7-py3-none-any.whl (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6) 2025-05-30T05:09:25,186 Found link https://files.pythonhosted.org/packages/3c/63/60419f3502fb9c39fd8eb42b9cb881ce8dd5883bd1e9a164255abcf581a5/hubmap-commons-2.1.8.tar.gz (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6), version: 2.1.8 2025-05-30T05:09:25,187 Skipping link: No binaries permitted for hubmap-commons: https://files.pythonhosted.org/packages/89/1d/5533adcedb5d49a0519dc441c1b92f2adcaeecd5a598e02cbbb582382d23/hubmap_commons-2.1.8-py3-none-any.whl (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6) 2025-05-30T05:09:25,188 Found link https://files.pythonhosted.org/packages/69/05/28add53fff65add59bc2fddf2d8bfc97d646beeaa32991d3300a7aebbe8c/hubmap-commons-2.1.9.tar.gz (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6), version: 2.1.9 2025-05-30T05:09:25,188 Skipping link: No binaries permitted for hubmap-commons: https://files.pythonhosted.org/packages/52/d4/6e7e3a332dde4a1f38837732e7c42262791ad9231a75522b15ba9f96b4a8/hubmap_commons-2.1.9-py3-none-any.whl (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6) 2025-05-30T05:09:25,189 Found link https://files.pythonhosted.org/packages/b4/dc/3c162980eb5c1101ae6e3d8878435fd53a4ca3f10b4f21f971f7e592c74a/hubmap-commons-2.1.10.tar.gz (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6), version: 2.1.10 2025-05-30T05:09:25,189 Skipping link: No binaries permitted for hubmap-commons: https://files.pythonhosted.org/packages/dc/20/daef4a5a89c1e37cf2702a7167b9776b093f0b9f763ca883cdf13f64321e/hubmap_commons-2.1.10-py3-none-any.whl (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6) 2025-05-30T05:09:25,190 Found link https://files.pythonhosted.org/packages/d9/09/b4d71f025ef26f911731240cc7625dc10d982fb4759cc6aea113f9b58b9d/hubmap-commons-2.1.11.tar.gz (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6), version: 2.1.11 2025-05-30T05:09:25,190 Skipping link: No binaries permitted for hubmap-commons: https://files.pythonhosted.org/packages/c0/d0/dc01305d3dbc24de7a15b823a9fdd5ac6706e40f35d18b9cdb445fd08efd/hubmap_commons-2.1.11-py3-none-any.whl (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6) 2025-05-30T05:09:25,191 Found link https://files.pythonhosted.org/packages/1a/6d/2faad7f25faa4bf4a15236f9029061c4c7df73123bf5e72daf76bf47c911/hubmap-commons-2.1.12.tar.gz (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6), version: 2.1.12 2025-05-30T05:09:25,192 Skipping link: No binaries permitted for hubmap-commons: https://files.pythonhosted.org/packages/21/a6/c7b94a0c8c27d400610ad3e760f63499bc9250a97935367d401ff8c0001b/hubmap_commons-2.1.12-py3-none-any.whl (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6) 2025-05-30T05:09:25,192 Found link https://files.pythonhosted.org/packages/6e/7a/77b522552ddc057ee447cebc85f2a45332350a98276e68c3288b33569f75/hubmap-commons-2.1.13.tar.gz (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6), version: 2.1.13 2025-05-30T05:09:25,193 Skipping link: No binaries permitted for hubmap-commons: https://files.pythonhosted.org/packages/77/d0/91904bc9509951aaab159f797f31188a46758ddbfdf4ad2f6639d26646f1/hubmap_commons-2.1.13-py3-none-any.whl (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6) 2025-05-30T05:09:25,194 Found link https://files.pythonhosted.org/packages/7a/b6/d956f88f71e30f1b21eb5047dbd2b926f21111e957edffe4e6e83ea5a9c3/hubmap-commons-2.1.14.tar.gz (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6), version: 2.1.14 2025-05-30T05:09:25,194 Skipping link: No binaries permitted for hubmap-commons: https://files.pythonhosted.org/packages/75/71/6264283ace088f5b946e4214e02087cb9c9aa027d57caed45289232af957/hubmap_commons-2.1.14-py3-none-any.whl (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6) 2025-05-30T05:09:25,195 Skipping link: No binaries permitted for hubmap-commons: https://files.pythonhosted.org/packages/af/1e/7a94d3860add3d60f18833deddb283619805398e9d76b953a84e078fe574/hubmap_commons-2.1.15-py3-none-any.whl (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6) 2025-05-30T05:09:25,196 Found link https://files.pythonhosted.org/packages/93/d0/19d1830ca13e621bab47f84a348c7b730b19523d091a2acd3eb33146f000/hubmap_commons-2.1.15.tar.gz (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6), version: 2.1.15 2025-05-30T05:09:25,196 Skipping link: No binaries permitted for hubmap-commons: https://files.pythonhosted.org/packages/7a/f0/c4eebc8b703ce10aa34942265bb56efbea2564911372b3d5e93e41242100/hubmap_commons-2.1.16-py3-none-any.whl (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6) 2025-05-30T05:09:25,197 Found link https://files.pythonhosted.org/packages/7b/6d/89498d2ae7bae6e6fed2122d05236fd9ad45524ddb9091238e296e31900c/hubmap_commons-2.1.16.tar.gz (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6), version: 2.1.16 2025-05-30T05:09:25,198 Skipping link: No binaries permitted for hubmap-commons: https://files.pythonhosted.org/packages/85/1a/2bee66cb64bc63eb301e829a48360dd46beb4b47aa90c889b9b21f99f6da/hubmap_commons-2.1.17-py3-none-any.whl (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6) 2025-05-30T05:09:25,198 Found link https://files.pythonhosted.org/packages/52/1c/58b95ae8c6c1efc91dda7bca49aa13360f9a2d8e8d0c8d7e38c03e79abb0/hubmap_commons-2.1.17.tar.gz (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6), version: 2.1.17 2025-05-30T05:09:25,199 Found link https://files.pythonhosted.org/packages/f5/21/556441df3fb5cd6263e5b42acada021d8aed36b50192001dd4e7abef7451/hubmap-commons-2.1.18.tar.gz (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6), version: 2.1.18 2025-05-30T05:09:25,199 Skipping link: No binaries permitted for hubmap-commons: https://files.pythonhosted.org/packages/50/a4/03048c49e5a24575b9885a809e3793eca61c25e42c3785c949339f33d97a/hubmap_commons-2.1.18-py3-none-any.whl (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6) 2025-05-30T05:09:25,200 Skipping link: No binaries permitted for hubmap-commons: https://files.pythonhosted.org/packages/5f/14/c7acd58cda3596dfdd9d1fe898541037a107bc81e02192baa79e664987f0/hubmap_commons-2.1.19-py3-none-any.whl (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6) 2025-05-30T05:09:25,201 Found link https://files.pythonhosted.org/packages/3b/16/44f09eb2558f9ae232ac3523d92b432553a00b2263edf3bd137146ddf689/hubmap_commons-2.1.19.tar.gz (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6), version: 2.1.19 2025-05-30T05:09:25,201 Found link https://files.pythonhosted.org/packages/49/50/49b1cd5f478b9abe49e273e68fc5953ae2cb88d6cd472be7f110f76bae0a/hubmap-commons-2.1.20.tar.gz (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6), version: 2.1.20 2025-05-30T05:09:25,202 Skipping link: No binaries permitted for hubmap-commons: https://files.pythonhosted.org/packages/3f/2b/865c9c8b7ca90b43d415df6fb4642cd6f0c740922b54f76b733ffd7ffef8/hubmap_commons-2.1.20-py3-none-any.whl (from https://pypi.org/simple/hubmap-commons/) (requires-python:>=3.6) 2025-05-30T05:09:25,203 Fetching project page and analyzing links: https://www.piwheels.org/simple/hubmap-commons/ 2025-05-30T05:09:25,204 Getting page https://www.piwheels.org/simple/hubmap-commons/ 2025-05-30T05:09:25,205 Found index url https://www.piwheels.org/simple/ 2025-05-30T05:09:25,384 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/hubmap-commons/ 2025-05-30T05:09:26,037 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/hubmap-commons/ 2025-05-30T05:09:27,232 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/hubmap-commons/ 2025-05-30T05:09:29,446 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/hubmap-commons/ 2025-05-30T05:09:33,658 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/hubmap-commons/ 2025-05-30T05:09:33,875 Could not fetch URL https://www.piwheels.org/simple/hubmap-commons/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/hubmap-commons/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping 2025-05-30T05:09:33,877 Skipping link: not a file: https://www.piwheels.org/simple/hubmap-commons/ 2025-05-30T05:09:33,877 Skipping link: not a file: https://pypi.org/simple/hubmap-commons/ 2025-05-30T05:09:33,897 Given no hashes to check 1 links for project 'hubmap-commons': discarding no candidates 2025-05-30T05:09:33,899 Collecting hubmap-commons==2.1.20 2025-05-30T05:09:33,901 Created temporary directory: /tmp/pip-unpack-0_w850g8 2025-05-30T05:09:34,122 Downloading hubmap-commons-2.1.20.tar.gz (63 kB) 2025-05-30T05:09:34,251 Added hubmap-commons==2.1.20 from https://files.pythonhosted.org/packages/49/50/49b1cd5f478b9abe49e273e68fc5953ae2cb88d6cd472be7f110f76bae0a/hubmap-commons-2.1.20.tar.gz to build tracker '/tmp/pip-build-tracker-psi8lb3p' 2025-05-30T05:09:34,253 Running setup.py (path:/tmp/pip-wheel-bdc285an/hubmap-commons_ca413a48b8394f14809e3696a23fdfee/setup.py) egg_info for package hubmap-commons 2025-05-30T05:09:34,254 Created temporary directory: /tmp/pip-pip-egg-info-rot5la4j 2025-05-30T05:09:34,254 Preparing metadata (setup.py): started 2025-05-30T05:09:34,256 Running command python setup.py egg_info 2025-05-30T05:09:35,128 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-05-30T05:09:35,129 !! 2025-05-30T05:09:35,130 ******************************************************************************** 2025-05-30T05:09:35,130 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-05-30T05:09:35,131 License :: OSI Approved :: MIT License 2025-05-30T05:09:35,132 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-05-30T05:09:35,133 ******************************************************************************** 2025-05-30T05:09:35,134 !! 2025-05-30T05:09:35,134 self._finalize_license_expression() 2025-05-30T05:09:35,159 running egg_info 2025-05-30T05:09:35,186 creating /tmp/pip-pip-egg-info-rot5la4j/hubmap_commons.egg-info 2025-05-30T05:09:35,187 writing /tmp/pip-pip-egg-info-rot5la4j/hubmap_commons.egg-info/PKG-INFO 2025-05-30T05:09:35,190 writing dependency_links to /tmp/pip-pip-egg-info-rot5la4j/hubmap_commons.egg-info/dependency_links.txt 2025-05-30T05:09:35,192 writing requirements to /tmp/pip-pip-egg-info-rot5la4j/hubmap_commons.egg-info/requires.txt 2025-05-30T05:09:35,193 writing top-level names to /tmp/pip-pip-egg-info-rot5la4j/hubmap_commons.egg-info/top_level.txt 2025-05-30T05:09:35,195 writing manifest file '/tmp/pip-pip-egg-info-rot5la4j/hubmap_commons.egg-info/SOURCES.txt' 2025-05-30T05:09:35,282 reading manifest file '/tmp/pip-pip-egg-info-rot5la4j/hubmap_commons.egg-info/SOURCES.txt' 2025-05-30T05:09:35,287 writing manifest file '/tmp/pip-pip-egg-info-rot5la4j/hubmap_commons.egg-info/SOURCES.txt' 2025-05-30T05:09:35,396 Preparing metadata (setup.py): finished with status 'done' 2025-05-30T05:09:35,400 Source in /tmp/pip-wheel-bdc285an/hubmap-commons_ca413a48b8394f14809e3696a23fdfee has version 2.1.20, which satisfies requirement hubmap-commons==2.1.20 from https://files.pythonhosted.org/packages/49/50/49b1cd5f478b9abe49e273e68fc5953ae2cb88d6cd472be7f110f76bae0a/hubmap-commons-2.1.20.tar.gz 2025-05-30T05:09:35,401 Removed hubmap-commons==2.1.20 from https://files.pythonhosted.org/packages/49/50/49b1cd5f478b9abe49e273e68fc5953ae2cb88d6cd472be7f110f76bae0a/hubmap-commons-2.1.20.tar.gz from build tracker '/tmp/pip-build-tracker-psi8lb3p' 2025-05-30T05:09:35,409 Created temporary directory: /tmp/pip-unpack-jrg9aw1x 2025-05-30T05:09:35,410 Created temporary directory: /tmp/pip-unpack-56dqohfj 2025-05-30T05:09:35,411 Building wheels for collected packages: hubmap-commons 2025-05-30T05:09:35,414 Created temporary directory: /tmp/pip-wheel-3lpbf8gm 2025-05-30T05:09:35,415 DEPRECATION: Building 'hubmap-commons' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'hubmap-commons'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-05-30T05:09:35,416 Building wheel for hubmap-commons (setup.py): started 2025-05-30T05:09:35,417 Destination directory: /tmp/pip-wheel-3lpbf8gm 2025-05-30T05:09:35,418 Running command python setup.py bdist_wheel 2025-05-30T05:09:36,224 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-05-30T05:09:36,224 !! 2025-05-30T05:09:36,225 ******************************************************************************** 2025-05-30T05:09:36,226 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-05-30T05:09:36,227 License :: OSI Approved :: MIT License 2025-05-30T05:09:36,229 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-05-30T05:09:36,230 ******************************************************************************** 2025-05-30T05:09:36,231 !! 2025-05-30T05:09:36,231 self._finalize_license_expression() 2025-05-30T05:09:36,232 running bdist_wheel 2025-05-30T05:09:36,356 running build 2025-05-30T05:09:36,357 running build_py 2025-05-30T05:09:36,387 creating build/lib/hubmap_commons 2025-05-30T05:09:36,389 copying hubmap_commons/metadata.py -> build/lib/hubmap_commons 2025-05-30T05:09:36,392 copying hubmap_commons/provenance.py -> build/lib/hubmap_commons 2025-05-30T05:09:36,395 copying hubmap_commons/globus_file_helper.py -> build/lib/hubmap_commons 2025-05-30T05:09:36,397 copying hubmap_commons/test_helper.py -> build/lib/hubmap_commons 2025-05-30T05:09:36,399 copying hubmap_commons/file_helper.py -> build/lib/hubmap_commons 2025-05-30T05:09:36,401 copying hubmap_commons/autherror.py -> build/lib/hubmap_commons 2025-05-30T05:09:36,403 copying hubmap_commons/uuid_generator.py -> build/lib/hubmap_commons 2025-05-30T05:09:36,405 copying hubmap_commons/activity.py -> build/lib/hubmap_commons 2025-05-30T05:09:36,408 copying hubmap_commons/test_ws.py -> build/lib/hubmap_commons 2025-05-30T05:09:36,410 copying hubmap_commons/hubmap_error.py -> build/lib/hubmap_commons 2025-05-30T05:09:36,412 copying hubmap_commons/properties.py -> build/lib/hubmap_commons 2025-05-30T05:09:36,414 copying hubmap_commons/S3_worker.py -> build/lib/hubmap_commons 2025-05-30T05:09:36,416 copying hubmap_commons/string_helper.py -> build/lib/hubmap_commons 2025-05-30T05:09:36,419 copying hubmap_commons/entity.py -> build/lib/hubmap_commons 2025-05-30T05:09:36,422 copying hubmap_commons/net_helper.py -> build/lib/hubmap_commons 2025-05-30T05:09:36,423 copying hubmap_commons/neo4j_connection.py -> build/lib/hubmap_commons 2025-05-30T05:09:36,426 copying hubmap_commons/hm_auth.py -> build/lib/hubmap_commons 2025-05-30T05:09:36,429 copying hubmap_commons/exceptions.py -> build/lib/hubmap_commons 2025-05-30T05:09:36,430 copying hubmap_commons/hubmap_const.py -> build/lib/hubmap_commons 2025-05-30T05:09:36,433 copying hubmap_commons/neo4j_driver.py -> build/lib/hubmap_commons 2025-05-30T05:09:36,435 copying hubmap_commons/schema_tools.py -> build/lib/hubmap_commons 2025-05-30T05:09:36,437 copying hubmap_commons/singleton_metaclass.py -> build/lib/hubmap_commons 2025-05-30T05:09:36,438 running egg_info 2025-05-30T05:09:36,464 writing hubmap_commons.egg-info/PKG-INFO 2025-05-30T05:09:36,467 writing dependency_links to hubmap_commons.egg-info/dependency_links.txt 2025-05-30T05:09:36,469 writing requirements to hubmap_commons.egg-info/requires.txt 2025-05-30T05:09:36,470 writing top-level names to hubmap_commons.egg-info/top_level.txt 2025-05-30T05:09:36,501 reading manifest file 'hubmap_commons.egg-info/SOURCES.txt' 2025-05-30T05:09:36,509 writing manifest file 'hubmap_commons.egg-info/SOURCES.txt' 2025-05-30T05:09:36,512 copying hubmap_commons/21f293b0-globus-groups-new.json -> build/lib/hubmap_commons 2025-05-30T05:09:36,515 copying hubmap_commons/21f293b0-globus-groups.json -> build/lib/hubmap_commons 2025-05-30T05:09:36,518 copying hubmap_commons/21f293b0-process-user.json -> build/lib/hubmap_commons 2025-05-30T05:09:36,521 copying hubmap_commons/c4018852-globus-groups.json -> build/lib/hubmap_commons 2025-05-30T05:09:36,523 copying hubmap_commons/c4018852-process-user.json -> build/lib/hubmap_commons 2025-05-30T05:09:36,525 copying hubmap_commons/hubmap-globus-roles.json -> build/lib/hubmap_commons 2025-05-30T05:09:36,554 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-05-30T05:09:36,555 !! 2025-05-30T05:09:36,556 ******************************************************************************** 2025-05-30T05:09:36,557 Please avoid running ``setup.py`` directly. 2025-05-30T05:09:36,558 Instead, use pypa/build, pypa/installer or other 2025-05-30T05:09:36,558 standards-based tools. 2025-05-30T05:09:36,559 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-05-30T05:09:36,560 or your builds will no longer be supported. 2025-05-30T05:09:36,561 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-05-30T05:09:36,561 ******************************************************************************** 2025-05-30T05:09:36,563 !! 2025-05-30T05:09:36,563 self.initialize_options() 2025-05-30T05:09:36,581 installing to build/bdist.linux-armv7l/wheel 2025-05-30T05:09:36,582 running install 2025-05-30T05:09:36,606 running install_lib 2025-05-30T05:09:36,632 creating build/bdist.linux-armv7l/wheel 2025-05-30T05:09:36,634 creating build/bdist.linux-armv7l/wheel/hubmap_commons 2025-05-30T05:09:36,635 copying build/lib/hubmap_commons/metadata.py -> build/bdist.linux-armv7l/wheel/./hubmap_commons 2025-05-30T05:09:36,638 copying build/lib/hubmap_commons/provenance.py -> build/bdist.linux-armv7l/wheel/./hubmap_commons 2025-05-30T05:09:36,641 copying build/lib/hubmap_commons/globus_file_helper.py -> build/bdist.linux-armv7l/wheel/./hubmap_commons 2025-05-30T05:09:36,643 copying build/lib/hubmap_commons/21f293b0-process-user.json -> build/bdist.linux-armv7l/wheel/./hubmap_commons 2025-05-30T05:09:36,645 copying build/lib/hubmap_commons/21f293b0-globus-groups-new.json -> build/bdist.linux-armv7l/wheel/./hubmap_commons 2025-05-30T05:09:36,648 copying build/lib/hubmap_commons/test_helper.py -> build/bdist.linux-armv7l/wheel/./hubmap_commons 2025-05-30T05:09:36,649 copying build/lib/hubmap_commons/file_helper.py -> build/bdist.linux-armv7l/wheel/./hubmap_commons 2025-05-30T05:09:36,651 copying build/lib/hubmap_commons/autherror.py -> build/bdist.linux-armv7l/wheel/./hubmap_commons 2025-05-30T05:09:36,653 copying build/lib/hubmap_commons/uuid_generator.py -> build/bdist.linux-armv7l/wheel/./hubmap_commons 2025-05-30T05:09:36,655 copying build/lib/hubmap_commons/activity.py -> build/bdist.linux-armv7l/wheel/./hubmap_commons 2025-05-30T05:09:36,657 copying build/lib/hubmap_commons/test_ws.py -> build/bdist.linux-armv7l/wheel/./hubmap_commons 2025-05-30T05:09:36,659 copying build/lib/hubmap_commons/hubmap_error.py -> build/bdist.linux-armv7l/wheel/./hubmap_commons 2025-05-30T05:09:36,661 copying build/lib/hubmap_commons/properties.py -> build/bdist.linux-armv7l/wheel/./hubmap_commons 2025-05-30T05:09:36,663 copying build/lib/hubmap_commons/S3_worker.py -> build/bdist.linux-armv7l/wheel/./hubmap_commons 2025-05-30T05:09:36,665 copying build/lib/hubmap_commons/21f293b0-globus-groups.json -> build/bdist.linux-armv7l/wheel/./hubmap_commons 2025-05-30T05:09:36,667 copying build/lib/hubmap_commons/string_helper.py -> build/bdist.linux-armv7l/wheel/./hubmap_commons 2025-05-30T05:09:36,669 copying build/lib/hubmap_commons/entity.py -> build/bdist.linux-armv7l/wheel/./hubmap_commons 2025-05-30T05:09:36,673 copying build/lib/hubmap_commons/c4018852-globus-groups.json -> build/bdist.linux-armv7l/wheel/./hubmap_commons 2025-05-30T05:09:36,675 copying build/lib/hubmap_commons/net_helper.py -> build/bdist.linux-armv7l/wheel/./hubmap_commons 2025-05-30T05:09:36,677 copying build/lib/hubmap_commons/neo4j_connection.py -> build/bdist.linux-armv7l/wheel/./hubmap_commons 2025-05-30T05:09:36,679 copying build/lib/hubmap_commons/hm_auth.py -> build/bdist.linux-armv7l/wheel/./hubmap_commons 2025-05-30T05:09:36,682 copying build/lib/hubmap_commons/exceptions.py -> build/bdist.linux-armv7l/wheel/./hubmap_commons 2025-05-30T05:09:36,684 copying build/lib/hubmap_commons/hubmap_const.py -> build/bdist.linux-armv7l/wheel/./hubmap_commons 2025-05-30T05:09:36,686 copying build/lib/hubmap_commons/hubmap-globus-roles.json -> build/bdist.linux-armv7l/wheel/./hubmap_commons 2025-05-30T05:09:36,688 copying build/lib/hubmap_commons/c4018852-process-user.json -> build/bdist.linux-armv7l/wheel/./hubmap_commons 2025-05-30T05:09:36,690 copying build/lib/hubmap_commons/neo4j_driver.py -> build/bdist.linux-armv7l/wheel/./hubmap_commons 2025-05-30T05:09:36,692 copying build/lib/hubmap_commons/schema_tools.py -> build/bdist.linux-armv7l/wheel/./hubmap_commons 2025-05-30T05:09:36,694 copying build/lib/hubmap_commons/singleton_metaclass.py -> build/bdist.linux-armv7l/wheel/./hubmap_commons 2025-05-30T05:09:36,695 running install_egg_info 2025-05-30T05:09:36,729 Copying hubmap_commons.egg-info to build/bdist.linux-armv7l/wheel/./hubmap_commons-2.1.20-py3.11.egg-info 2025-05-30T05:09:36,739 running install_scripts 2025-05-30T05:09:36,748 creating build/bdist.linux-armv7l/wheel/hubmap_commons-2.1.20.dist-info/WHEEL 2025-05-30T05:09:36,750 creating '/tmp/pip-wheel-3lpbf8gm/hubmap_commons-2.1.20-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-05-30T05:09:36,754 adding 'hubmap_commons/21f293b0-globus-groups-new.json' 2025-05-30T05:09:36,756 adding 'hubmap_commons/21f293b0-globus-groups.json' 2025-05-30T05:09:36,758 adding 'hubmap_commons/21f293b0-process-user.json' 2025-05-30T05:09:36,760 adding 'hubmap_commons/S3_worker.py' 2025-05-30T05:09:36,761 adding 'hubmap_commons/activity.py' 2025-05-30T05:09:36,763 adding 'hubmap_commons/autherror.py' 2025-05-30T05:09:36,765 adding 'hubmap_commons/c4018852-globus-groups.json' 2025-05-30T05:09:36,766 adding 'hubmap_commons/c4018852-process-user.json' 2025-05-30T05:09:36,772 adding 'hubmap_commons/entity.py' 2025-05-30T05:09:36,774 adding 'hubmap_commons/exceptions.py' 2025-05-30T05:09:36,775 adding 'hubmap_commons/file_helper.py' 2025-05-30T05:09:36,777 adding 'hubmap_commons/globus_file_helper.py' 2025-05-30T05:09:36,781 adding 'hubmap_commons/hm_auth.py' 2025-05-30T05:09:36,783 adding 'hubmap_commons/hubmap-globus-roles.json' 2025-05-30T05:09:36,784 adding 'hubmap_commons/hubmap_const.py' 2025-05-30T05:09:36,786 adding 'hubmap_commons/hubmap_error.py' 2025-05-30T05:09:36,787 adding 'hubmap_commons/metadata.py' 2025-05-30T05:09:36,789 adding 'hubmap_commons/neo4j_connection.py' 2025-05-30T05:09:36,791 adding 'hubmap_commons/neo4j_driver.py' 2025-05-30T05:09:36,792 adding 'hubmap_commons/net_helper.py' 2025-05-30T05:09:36,793 adding 'hubmap_commons/properties.py' 2025-05-30T05:09:36,796 adding 'hubmap_commons/provenance.py' 2025-05-30T05:09:36,798 adding 'hubmap_commons/schema_tools.py' 2025-05-30T05:09:36,799 adding 'hubmap_commons/singleton_metaclass.py' 2025-05-30T05:09:36,801 adding 'hubmap_commons/string_helper.py' 2025-05-30T05:09:36,802 adding 'hubmap_commons/test_helper.py' 2025-05-30T05:09:36,804 adding 'hubmap_commons/test_ws.py' 2025-05-30T05:09:36,805 adding 'hubmap_commons/uuid_generator.py' 2025-05-30T05:09:36,808 adding 'hubmap_commons-2.1.20.dist-info/METADATA' 2025-05-30T05:09:36,808 adding 'hubmap_commons-2.1.20.dist-info/WHEEL' 2025-05-30T05:09:36,809 adding 'hubmap_commons-2.1.20.dist-info/top_level.txt' 2025-05-30T05:09:36,810 adding 'hubmap_commons-2.1.20.dist-info/RECORD' 2025-05-30T05:09:36,813 removing build/bdist.linux-armv7l/wheel 2025-05-30T05:09:36,931 Building wheel for hubmap-commons (setup.py): finished with status 'done' 2025-05-30T05:09:36,934 Created wheel for hubmap-commons: filename=hubmap_commons-2.1.20-py3-none-any.whl size=68960 sha256=62b2e338110a8b8a997f759c0a0fd3a6278de9c111e63c0feea325210a65bb42 2025-05-30T05:09:36,935 Stored in directory: /tmp/pip-ephem-wheel-cache-rogru_f9/wheels/58/01/1d/74390e47d1853ce3f5fff4f82b0ba38e8e4c7ea4d0a5711373 2025-05-30T05:09:36,947 Successfully built hubmap-commons 2025-05-30T05:09:36,952 Removed build tracker: '/tmp/pip-build-tracker-psi8lb3p'