2025-05-30T05:58:02,283 Created temporary directory: /tmp/pip-build-tracker-gi4bcbxw 2025-05-30T05:58:02,284 Initialized build tracking at /tmp/pip-build-tracker-gi4bcbxw 2025-05-30T05:58:02,285 Created build tracker: /tmp/pip-build-tracker-gi4bcbxw 2025-05-30T05:58:02,285 Entered build tracker: /tmp/pip-build-tracker-gi4bcbxw 2025-05-30T05:58:02,286 Created temporary directory: /tmp/pip-wheel-56my8jt7 2025-05-30T05:58:02,290 Created temporary directory: /tmp/pip-ephem-wheel-cache-4154ymiw 2025-05-30T05:58:02,341 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-05-30T05:58:02,344 2 location(s) to search for versions of maboss: 2025-05-30T05:58:02,344 * https://pypi.org/simple/maboss/ 2025-05-30T05:58:02,344 * https://www.piwheels.org/simple/maboss/ 2025-05-30T05:58:02,345 Fetching project page and analyzing links: https://pypi.org/simple/maboss/ 2025-05-30T05:58:02,345 Getting page https://pypi.org/simple/maboss/ 2025-05-30T05:58:02,347 Found index url https://pypi.org/simple/ 2025-05-30T05:58:02,576 Fetched page https://pypi.org/simple/maboss/ as application/vnd.pypi.simple.v1+json 2025-05-30T05:58:02,587 Found link https://files.pythonhosted.org/packages/70/d9/d99c5f6cbccdd64ae01a47295e9ae817f6acdb42d26fcc32ff63a147e9d5/maboss-0.6.1.tar.gz (from https://pypi.org/simple/maboss/), version: 0.6.1 2025-05-30T05:58:02,588 Found link https://files.pythonhosted.org/packages/83/09/f3721877213a0dc1f43b33f03cf502f5de7d398c18d38e3439d59fe69ba9/maboss-0.6.2.tar.gz (from https://pypi.org/simple/maboss/), version: 0.6.2 2025-05-30T05:58:02,590 Found link https://files.pythonhosted.org/packages/2e/02/89fff2f0424bf190ff1b560b21d2844a1cb220fb8c361dc39a3737401d69/maboss-0.6.3.tar.gz (from https://pypi.org/simple/maboss/), version: 0.6.3 2025-05-30T05:58:02,591 Found link https://files.pythonhosted.org/packages/8c/2e/e9ebf041108791728883ad9457f3b426abf8824fe6ad240f85a6cb7d374b/maboss-0.6.4.tar.gz (from https://pypi.org/simple/maboss/), version: 0.6.4 2025-05-30T05:58:02,592 Found link https://files.pythonhosted.org/packages/d9/97/6f6fb2961baf949371378d9d57c5d294e6f0b6686351b56325f46014ee05/maboss-0.7.2.tar.gz (from https://pypi.org/simple/maboss/), version: 0.7.2 2025-05-30T05:58:02,593 Found link https://files.pythonhosted.org/packages/5b/a2/99e3b6e94a1bf608d288e327c46be46bcb9ab3ae9a0fa7d685fbe07514ee/maboss-0.7.3.tar.gz (from https://pypi.org/simple/maboss/), version: 0.7.3 2025-05-30T05:58:02,595 Found link https://files.pythonhosted.org/packages/f3/9f/8d0af61011f97139131ff4747dd02f678d19110be65c9fadd07634abf5f5/maboss-0.7.4.tar.gz (from https://pypi.org/simple/maboss/), version: 0.7.4 2025-05-30T05:58:02,595 Found link https://files.pythonhosted.org/packages/53/d7/455a29a8cd5d0ff50922d3cf3653782691cc36adc33682b098d6d71f7ff7/maboss-0.7.5.tar.gz (from https://pypi.org/simple/maboss/), version: 0.7.5 2025-05-30T05:58:02,596 Found link https://files.pythonhosted.org/packages/29/73/ad0eacc80911ad1c81638adc861bb3de32646e160b0db503a2889f79b0ad/maboss-0.7.6.tar.gz (from https://pypi.org/simple/maboss/), version: 0.7.6 2025-05-30T05:58:02,597 Found link https://files.pythonhosted.org/packages/c1/6d/b47e487c1193f69432dee9e6da654d170288347f5a4f6a0317ee4e3961d7/maboss-0.7.7.tar.gz (from https://pypi.org/simple/maboss/), version: 0.7.7 2025-05-30T05:58:02,598 Found link https://files.pythonhosted.org/packages/3c/61/0851657ef6d73308113d47f3784202044aa1d4a877b1480b0ab3886c5707/maboss-0.7.8.tar.gz (from https://pypi.org/simple/maboss/), version: 0.7.8 2025-05-30T05:58:02,598 Found link https://files.pythonhosted.org/packages/2a/02/947279678913773a4d0fd66b6bf193c6ddad0b42dea29a025cce2e3d0121/maboss-0.7.9.tar.gz (from https://pypi.org/simple/maboss/), version: 0.7.9 2025-05-30T05:58:02,599 Found link https://files.pythonhosted.org/packages/b5/47/cbd8dc19e132c9c57c3974c202828453ca16348e7adc164cbe58543abb3d/maboss-0.7.10.tar.gz (from https://pypi.org/simple/maboss/), version: 0.7.10 2025-05-30T05:58:02,600 Found link https://files.pythonhosted.org/packages/fd/2e/07ea7e473eb2cf8bed0af8838a5cb018db72b223a2a6f9a9d374e502c180/maboss-0.7.11.tar.gz (from https://pypi.org/simple/maboss/), version: 0.7.11 2025-05-30T05:58:02,600 Found link https://files.pythonhosted.org/packages/de/ce/6b97e59e2dfe6f4e811c367688d12ce8cc21e00bd7a2b92d10227966b0b6/maboss-0.7.12.tar.gz (from https://pypi.org/simple/maboss/), version: 0.7.12 2025-05-30T05:58:02,601 Found link https://files.pythonhosted.org/packages/39/1f/6dad3148e4ba7ca8b062b558509380c322b4b7d43f4797b5f3d0ee6858d1/maboss-0.7.13.tar.gz (from https://pypi.org/simple/maboss/), version: 0.7.13 2025-05-30T05:58:02,602 Found link https://files.pythonhosted.org/packages/4a/74/88261da316e1996435d67830ce1da3f40cb6172de508352cf57710e45925/maboss-0.7.14.tar.gz (from https://pypi.org/simple/maboss/), version: 0.7.14 2025-05-30T05:58:02,603 Found link https://files.pythonhosted.org/packages/59/9f/4db09078e27438b6c50a39f9fbfbba6aad21adc9461b97ceb775032831f4/maboss-0.7.15.tar.gz (from https://pypi.org/simple/maboss/), version: 0.7.15 2025-05-30T05:58:02,603 Found link https://files.pythonhosted.org/packages/21/b7/819896263ff2d5233233749f49cf70e259ea49d08674734457d9aab1178d/maboss-0.7.16.tar.gz (from https://pypi.org/simple/maboss/), version: 0.7.16 2025-05-30T05:58:02,604 Found link https://files.pythonhosted.org/packages/10/23/ce6af188dca7902468d04209beace3e34a5d7c02ffa4489c3ca5ed9a850c/maboss-0.7.17.tar.gz (from https://pypi.org/simple/maboss/), version: 0.7.17 2025-05-30T05:58:02,604 Found link https://files.pythonhosted.org/packages/a5/2e/a8fb4b762d798b7466919c67830e34d22f17b4c10f6a415df971b2ce8b7a/maboss-0.7.18.tar.gz (from https://pypi.org/simple/maboss/), version: 0.7.18 2025-05-30T05:58:02,605 Found link https://files.pythonhosted.org/packages/2a/87/0d4951b81161bfbb2511b22fe8c2237e86d4a1cb25c7688db914b74a2487/maboss-0.7.19.tar.gz (from https://pypi.org/simple/maboss/), version: 0.7.19 2025-05-30T05:58:02,606 Found link https://files.pythonhosted.org/packages/df/c9/904c107a80e6579e36c2d1ad3f8d7431e5dffb1f5b1cac9e05932619ed1d/maboss-0.8.0.tar.gz (from https://pypi.org/simple/maboss/), version: 0.8.0 2025-05-30T05:58:02,606 Found link https://files.pythonhosted.org/packages/05/2e/8d0a2df6107d2528b228dc3abb6d3c2bbd83aed97175e7a88cf267b77478/maboss-0.8.1.tar.gz (from https://pypi.org/simple/maboss/), version: 0.8.1 2025-05-30T05:58:02,607 Found link https://files.pythonhosted.org/packages/97/e2/4201f1bc2ab58fa122f6a2a7033d164b36e4784fda73a200458c0ba5a53c/maboss-0.8.2.tar.gz (from https://pypi.org/simple/maboss/), version: 0.8.2 2025-05-30T05:58:02,608 Found link https://files.pythonhosted.org/packages/04/9b/4d407930b559ec35dea774af8d149d2c7914ec729cb5b43675fbc8450e66/maboss-0.8.3.tar.gz (from https://pypi.org/simple/maboss/), version: 0.8.3 2025-05-30T05:58:02,609 Found link https://files.pythonhosted.org/packages/ad/5e/42659dd79c09119ab0460059613e6975003d30ccdb7a5aff3ac3070209d3/maboss-0.8.4.tar.gz (from https://pypi.org/simple/maboss/), version: 0.8.4 2025-05-30T05:58:02,609 Found link https://files.pythonhosted.org/packages/af/ad/b3a94cd8995902e5a9c1220cd41dfbc62b5139b41d6efe47f241a0e65176/maboss-0.8.5.tar.gz (from https://pypi.org/simple/maboss/), version: 0.8.5 2025-05-30T05:58:02,610 Found link https://files.pythonhosted.org/packages/72/60/68a68faac26c8a44ad9d17587d5cf8f302f78de4a153ff4ea271f600267b/maboss-0.8.6.tar.gz (from https://pypi.org/simple/maboss/), version: 0.8.6 2025-05-30T05:58:02,611 Skipping link: No binaries permitted for maboss: https://files.pythonhosted.org/packages/b5/3f/b27c6196770f3ba3a025b8cd30e3ea21c7d80ce9aa2c247d19ca913ace06/maboss-0.8.7-py3-none-any.whl (from https://pypi.org/simple/maboss/) 2025-05-30T05:58:02,611 Found link https://files.pythonhosted.org/packages/9d/62/227342c8fd8337d9eeb363463d4f5550dee9a476cc1197982f5c2bc976e2/maboss-0.8.7.tar.gz (from https://pypi.org/simple/maboss/), version: 0.8.7 2025-05-30T05:58:02,612 Skipping link: No binaries permitted for maboss: https://files.pythonhosted.org/packages/cf/b6/7a05763df7d588b896e071e03e10fd1e280c68f91f2dfc1157726d07af42/maboss-0.8.8-py3-none-any.whl (from https://pypi.org/simple/maboss/) 2025-05-30T05:58:02,613 Found link https://files.pythonhosted.org/packages/0c/d2/9f5d61b9173b26c2cd6c792b2c3896b0f083102affac865f892ecc393d0b/maboss-0.8.8.tar.gz (from https://pypi.org/simple/maboss/), version: 0.8.8 2025-05-30T05:58:02,614 Skipping link: No binaries permitted for maboss: https://files.pythonhosted.org/packages/bd/d4/e94080591d961e8865e9124665fc3b70127a20769b5a1490ee98a5964afe/maboss-0.8.9-py3-none-any.whl (from https://pypi.org/simple/maboss/) 2025-05-30T05:58:02,614 Found link https://files.pythonhosted.org/packages/69/a6/6a307b0ed5a0ec200abf86c4d785f088fd32e16ca42e956f5bdb06c52b5b/maboss-0.8.9.tar.gz (from https://pypi.org/simple/maboss/), version: 0.8.9 2025-05-30T05:58:02,615 Skipping link: No binaries permitted for maboss: https://files.pythonhosted.org/packages/4b/23/da37d7685f877a8f1704b031b7590a68efb3d28a4a51d0c58b8716dc1788/maboss-0.8.10-py3-none-any.whl (from https://pypi.org/simple/maboss/) 2025-05-30T05:58:02,615 Found link https://files.pythonhosted.org/packages/e9/06/a34b9f733bc33b3c809eaeab32b124c4c67053f96e06a7749807eb4c9015/maboss-0.8.10.tar.gz (from https://pypi.org/simple/maboss/), version: 0.8.10 2025-05-30T05:58:02,616 Fetching project page and analyzing links: https://www.piwheels.org/simple/maboss/ 2025-05-30T05:58:02,617 Getting page https://www.piwheels.org/simple/maboss/ 2025-05-30T05:58:02,619 Found index url https://www.piwheels.org/simple/ 2025-05-30T05:58:02,782 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/maboss/ 2025-05-30T05:58:03,439 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/maboss/ 2025-05-30T05:58:04,606 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/maboss/ 2025-05-30T05:58:06,774 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/maboss/ 2025-05-30T05:58:10,943 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/maboss/ 2025-05-30T05:58:11,112 Could not fetch URL https://www.piwheels.org/simple/maboss/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/maboss/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping 2025-05-30T05:58:11,114 Skipping link: not a file: https://www.piwheels.org/simple/maboss/ 2025-05-30T05:58:11,115 Skipping link: not a file: https://pypi.org/simple/maboss/ 2025-05-30T05:58:11,141 Given no hashes to check 1 links for project 'maboss': discarding no candidates 2025-05-30T05:58:11,143 Collecting maboss==0.8.10 2025-05-30T05:58:11,145 Created temporary directory: /tmp/pip-unpack-icloyuo3 2025-05-30T05:58:11,376 Downloading maboss-0.8.10.tar.gz (79 kB) 2025-05-30T05:58:11,581 Added maboss==0.8.10 from https://files.pythonhosted.org/packages/e9/06/a34b9f733bc33b3c809eaeab32b124c4c67053f96e06a7749807eb4c9015/maboss-0.8.10.tar.gz to build tracker '/tmp/pip-build-tracker-gi4bcbxw' 2025-05-30T05:58:11,584 Running setup.py (path:/tmp/pip-wheel-56my8jt7/maboss_b497301376cc4e2ca6a8852d2f8e025d/setup.py) egg_info for package maboss 2025-05-30T05:58:11,585 Created temporary directory: /tmp/pip-pip-egg-info-60ku29gw 2025-05-30T05:58:11,586 Preparing metadata (setup.py): started 2025-05-30T05:58:11,588 Running command python setup.py egg_info 2025-05-30T05:58:12,540 running egg_info 2025-05-30T05:58:12,568 creating /tmp/pip-pip-egg-info-60ku29gw/maboss.egg-info 2025-05-30T05:58:12,569 writing /tmp/pip-pip-egg-info-60ku29gw/maboss.egg-info/PKG-INFO 2025-05-30T05:58:12,572 writing dependency_links to /tmp/pip-pip-egg-info-60ku29gw/maboss.egg-info/dependency_links.txt 2025-05-30T05:58:12,575 writing requirements to /tmp/pip-pip-egg-info-60ku29gw/maboss.egg-info/requires.txt 2025-05-30T05:58:12,576 writing top-level names to /tmp/pip-pip-egg-info-60ku29gw/maboss.egg-info/top_level.txt 2025-05-30T05:58:12,577 writing manifest file '/tmp/pip-pip-egg-info-60ku29gw/maboss.egg-info/SOURCES.txt' 2025-05-30T05:58:12,702 reading manifest file '/tmp/pip-pip-egg-info-60ku29gw/maboss.egg-info/SOURCES.txt' 2025-05-30T05:58:12,704 reading manifest template 'MANIFEST.in' 2025-05-30T05:58:12,705 no previously-included directories found matching 'conda' 2025-05-30T05:58:12,706 no previously-included directories found matching 'doc' 2025-05-30T05:58:12,707 no previously-included directories found matching 'notebook' 2025-05-30T05:58:12,707 no previously-included directories found matching 'test' 2025-05-30T05:58:12,708 warning: no previously-included files found matching '.gitignore' 2025-05-30T05:58:12,712 writing manifest file '/tmp/pip-pip-egg-info-60ku29gw/maboss.egg-info/SOURCES.txt' 2025-05-30T05:58:12,820 Preparing metadata (setup.py): finished with status 'done' 2025-05-30T05:58:12,824 Source in /tmp/pip-wheel-56my8jt7/maboss_b497301376cc4e2ca6a8852d2f8e025d has version 0.8.10, which satisfies requirement maboss==0.8.10 from https://files.pythonhosted.org/packages/e9/06/a34b9f733bc33b3c809eaeab32b124c4c67053f96e06a7749807eb4c9015/maboss-0.8.10.tar.gz 2025-05-30T05:58:12,825 Removed maboss==0.8.10 from https://files.pythonhosted.org/packages/e9/06/a34b9f733bc33b3c809eaeab32b124c4c67053f96e06a7749807eb4c9015/maboss-0.8.10.tar.gz from build tracker '/tmp/pip-build-tracker-gi4bcbxw' 2025-05-30T05:58:12,832 Created temporary directory: /tmp/pip-unpack-e7ul9v3h 2025-05-30T05:58:12,833 Created temporary directory: /tmp/pip-unpack-5tkf_b49 2025-05-30T05:58:12,833 Building wheels for collected packages: maboss 2025-05-30T05:58:12,837 Created temporary directory: /tmp/pip-wheel-lqpgodat 2025-05-30T05:58:12,838 DEPRECATION: Building 'maboss' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'maboss'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-05-30T05:58:12,840 Building wheel for maboss (setup.py): started 2025-05-30T05:58:12,842 Destination directory: /tmp/pip-wheel-lqpgodat 2025-05-30T05:58:12,842 Running command python setup.py bdist_wheel 2025-05-30T05:58:13,686 running bdist_wheel 2025-05-30T05:58:13,825 running build 2025-05-30T05:58:13,826 running build_py 2025-05-30T05:58:13,856 creating build/lib 2025-05-30T05:58:13,858 copying maboss_setup.py -> build/lib 2025-05-30T05:58:13,861 copying maboss_setup_experimental.py -> build/lib 2025-05-30T05:58:13,864 creating build/lib/maboss 2025-05-30T05:58:13,865 copying maboss/bnetsimulation.py -> build/lib/maboss 2025-05-30T05:58:13,868 copying maboss/simulation.py -> build/lib/maboss 2025-05-30T05:58:13,870 copying maboss/sbmlsimulation.py -> build/lib/maboss 2025-05-30T05:58:13,872 copying maboss/gsparser.py -> build/lib/maboss 2025-05-30T05:58:13,875 copying maboss/cmabossresult2.py -> build/lib/maboss 2025-05-30T05:58:13,878 copying maboss/cmabosssimulation.py -> build/lib/maboss 2025-05-30T05:58:13,881 copying maboss/sbmlcmabossresult.py -> build/lib/maboss 2025-05-30T05:58:13,883 copying maboss/cmabossresult.py -> build/lib/maboss 2025-05-30T05:58:13,886 copying maboss/network.py -> build/lib/maboss 2025-05-30T05:58:13,888 copying maboss/logic.py -> build/lib/maboss 2025-05-30T05:58:13,890 copying maboss/__init__.py -> build/lib/maboss 2025-05-30T05:58:13,892 copying maboss/ui.py -> build/lib/maboss 2025-05-30T05:58:13,894 copying maboss/figures.py -> build/lib/maboss 2025-05-30T05:58:13,897 copying maboss/result.py -> build/lib/maboss 2025-05-30T05:58:13,900 creating build/lib/maboss/pop 2025-05-30T05:58:13,901 copying maboss/pop/popsimulation.py -> build/lib/maboss/pop 2025-05-30T05:58:13,903 copying maboss/pop/popresult.py -> build/lib/maboss/pop 2025-05-30T05:58:13,906 copying maboss/pop/__init__.py -> build/lib/maboss/pop 2025-05-30T05:58:13,908 copying maboss/pop/storedpopresult.py -> build/lib/maboss/pop 2025-05-30T05:58:13,912 copying maboss/pop/cmabosspopresult.py -> build/lib/maboss/pop 2025-05-30T05:58:13,915 creating build/lib/maboss/results 2025-05-30T05:58:13,916 copying maboss/results/finalresult.py -> build/lib/maboss/results 2025-05-30T05:58:13,918 copying maboss/results/statdistresult.py -> build/lib/maboss/results 2025-05-30T05:58:13,921 copying maboss/results/storedresult.py -> build/lib/maboss/results 2025-05-30T05:58:13,923 copying maboss/results/__init__.py -> build/lib/maboss/results 2025-05-30T05:58:13,925 copying maboss/results/probtrajresult.py -> build/lib/maboss/results 2025-05-30T05:58:13,928 copying maboss/results/baseresult.py -> build/lib/maboss/results 2025-05-30T05:58:13,931 creating build/lib/maboss/widgets 2025-05-30T05:58:13,932 copying maboss/widgets/__init__.py -> build/lib/maboss/widgets 2025-05-30T05:58:13,934 copying maboss/widgets/ipywidgets.py -> build/lib/maboss/widgets 2025-05-30T05:58:13,937 copying maboss/widgets/menu.py -> build/lib/maboss/widgets 2025-05-30T05:58:13,940 creating build/lib/maboss/ensemble 2025-05-30T05:58:13,941 copying maboss/ensemble/__init__.py -> build/lib/maboss/ensemble 2025-05-30T05:58:13,943 copying maboss/ensemble/result.py -> build/lib/maboss/ensemble 2025-05-30T05:58:13,946 copying maboss/ensemble/ensemble.py -> build/lib/maboss/ensemble 2025-05-30T05:58:13,950 creating build/lib/maboss/pipelines 2025-05-30T05:58:13,951 copying maboss/pipelines/__init__.py -> build/lib/maboss/pipelines 2025-05-30T05:58:13,954 creating build/lib/maboss/server 2025-05-30T05:58:13,956 copying maboss/server/comm.py -> build/lib/maboss/server 2025-05-30T05:58:13,959 copying maboss/server/client.py -> build/lib/maboss/server 2025-05-30T05:58:13,961 copying maboss/server/__init__.py -> build/lib/maboss/server 2025-05-30T05:58:13,963 copying maboss/server/atexit.py -> build/lib/maboss/server 2025-05-30T05:58:13,965 copying maboss/server/result.py -> build/lib/maboss/server 2025-05-30T05:58:13,968 creating build/lib/maboss/upp 2025-05-30T05:58:13,969 copying maboss/upp/results.py -> build/lib/maboss/upp 2025-05-30T05:58:13,972 copying maboss/upp/__init__.py -> build/lib/maboss/upp 2025-05-30T05:58:13,974 copying maboss/upp/upp.py -> build/lib/maboss/upp 2025-05-30T05:58:13,977 copying maboss/upp/cmaboss_results.py -> build/lib/maboss/upp 2025-05-30T05:58:13,988 running build_scripts 2025-05-30T05:58:13,989 creating build/scripts-3.11 2025-05-30T05:58:13,990 copying and adjusting scripts/MBSS_FormatTable.py -> build/scripts-3.11 2025-05-30T05:58:13,992 copying and adjusting scripts/UpPMaBoSS.py -> build/scripts-3.11 2025-05-30T05:58:13,994 changing mode of build/scripts-3.11/MBSS_FormatTable.py from 644 to 755 2025-05-30T05:58:13,994 changing mode of build/scripts-3.11/UpPMaBoSS.py from 644 to 755 2025-05-30T05:58:14,025 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-05-30T05:58:14,025 !! 2025-05-30T05:58:14,027 ******************************************************************************** 2025-05-30T05:58:14,028 Please avoid running ``setup.py`` directly. 2025-05-30T05:58:14,028 Instead, use pypa/build, pypa/installer or other 2025-05-30T05:58:14,029 standards-based tools. 2025-05-30T05:58:14,030 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-05-30T05:58:14,030 or your builds will no longer be supported. 2025-05-30T05:58:14,031 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-05-30T05:58:14,031 ******************************************************************************** 2025-05-30T05:58:14,032 !! 2025-05-30T05:58:14,033 self.initialize_options() 2025-05-30T05:58:14,054 installing to build/bdist.linux-armv7l/wheel 2025-05-30T05:58:14,055 running install 2025-05-30T05:58:14,080 running install_lib 2025-05-30T05:58:14,106 creating build/bdist.linux-armv7l/wheel 2025-05-30T05:58:14,108 copying build/lib/maboss_setup.py -> build/bdist.linux-armv7l/wheel/. 2025-05-30T05:58:14,111 creating build/bdist.linux-armv7l/wheel/maboss 2025-05-30T05:58:14,112 copying build/lib/maboss/bnetsimulation.py -> build/bdist.linux-armv7l/wheel/./maboss 2025-05-30T05:58:14,114 copying build/lib/maboss/simulation.py -> build/bdist.linux-armv7l/wheel/./maboss 2025-05-30T05:58:14,117 creating build/bdist.linux-armv7l/wheel/maboss/pop 2025-05-30T05:58:14,118 copying build/lib/maboss/pop/popsimulation.py -> build/bdist.linux-armv7l/wheel/./maboss/pop 2025-05-30T05:58:14,121 copying build/lib/maboss/pop/popresult.py -> build/bdist.linux-armv7l/wheel/./maboss/pop 2025-05-30T05:58:14,123 copying build/lib/maboss/pop/__init__.py -> build/bdist.linux-armv7l/wheel/./maboss/pop 2025-05-30T05:58:14,126 copying build/lib/maboss/pop/storedpopresult.py -> build/bdist.linux-armv7l/wheel/./maboss/pop 2025-05-30T05:58:14,129 copying build/lib/maboss/pop/cmabosspopresult.py -> build/bdist.linux-armv7l/wheel/./maboss/pop 2025-05-30T05:58:14,132 creating build/bdist.linux-armv7l/wheel/maboss/results 2025-05-30T05:58:14,134 copying build/lib/maboss/results/finalresult.py -> build/bdist.linux-armv7l/wheel/./maboss/results 2025-05-30T05:58:14,136 copying build/lib/maboss/results/statdistresult.py -> build/bdist.linux-armv7l/wheel/./maboss/results 2025-05-30T05:58:14,139 copying build/lib/maboss/results/storedresult.py -> build/bdist.linux-armv7l/wheel/./maboss/results 2025-05-30T05:58:14,141 copying build/lib/maboss/results/__init__.py -> build/bdist.linux-armv7l/wheel/./maboss/results 2025-05-30T05:58:14,143 copying build/lib/maboss/results/probtrajresult.py -> build/bdist.linux-armv7l/wheel/./maboss/results 2025-05-30T05:58:14,146 copying build/lib/maboss/results/baseresult.py -> build/bdist.linux-armv7l/wheel/./maboss/results 2025-05-30T05:58:14,148 copying build/lib/maboss/sbmlsimulation.py -> build/bdist.linux-armv7l/wheel/./maboss 2025-05-30T05:58:14,151 creating build/bdist.linux-armv7l/wheel/maboss/widgets 2025-05-30T05:58:14,152 copying build/lib/maboss/widgets/__init__.py -> build/bdist.linux-armv7l/wheel/./maboss/widgets 2025-05-30T05:58:14,155 copying build/lib/maboss/widgets/ipywidgets.py -> build/bdist.linux-armv7l/wheel/./maboss/widgets 2025-05-30T05:58:14,157 copying build/lib/maboss/widgets/menu.py -> build/bdist.linux-armv7l/wheel/./maboss/widgets 2025-05-30T05:58:14,160 creating build/bdist.linux-armv7l/wheel/maboss/ensemble 2025-05-30T05:58:14,161 copying build/lib/maboss/ensemble/__init__.py -> build/bdist.linux-armv7l/wheel/./maboss/ensemble 2025-05-30T05:58:14,163 copying build/lib/maboss/ensemble/result.py -> build/bdist.linux-armv7l/wheel/./maboss/ensemble 2025-05-30T05:58:14,167 copying build/lib/maboss/ensemble/ensemble.py -> build/bdist.linux-armv7l/wheel/./maboss/ensemble 2025-05-30T05:58:14,169 copying build/lib/maboss/gsparser.py -> build/bdist.linux-armv7l/wheel/./maboss 2025-05-30T05:58:14,173 copying build/lib/maboss/cmabossresult2.py -> build/bdist.linux-armv7l/wheel/./maboss 2025-05-30T05:58:14,175 copying build/lib/maboss/cmabosssimulation.py -> build/bdist.linux-armv7l/wheel/./maboss 2025-05-30T05:58:14,178 copying build/lib/maboss/sbmlcmabossresult.py -> build/bdist.linux-armv7l/wheel/./maboss 2025-05-30T05:58:14,179 copying build/lib/maboss/cmabossresult.py -> build/bdist.linux-armv7l/wheel/./maboss 2025-05-30T05:58:14,182 copying build/lib/maboss/network.py -> build/bdist.linux-armv7l/wheel/./maboss 2025-05-30T05:58:14,184 copying build/lib/maboss/logic.py -> build/bdist.linux-armv7l/wheel/./maboss 2025-05-30T05:58:14,187 creating build/bdist.linux-armv7l/wheel/maboss/pipelines 2025-05-30T05:58:14,188 copying build/lib/maboss/pipelines/__init__.py -> build/bdist.linux-armv7l/wheel/./maboss/pipelines 2025-05-30T05:58:14,191 copying build/lib/maboss/__init__.py -> build/bdist.linux-armv7l/wheel/./maboss 2025-05-30T05:58:14,193 copying build/lib/maboss/ui.py -> build/bdist.linux-armv7l/wheel/./maboss 2025-05-30T05:58:14,196 creating build/bdist.linux-armv7l/wheel/maboss/server 2025-05-30T05:58:14,197 copying build/lib/maboss/server/comm.py -> build/bdist.linux-armv7l/wheel/./maboss/server 2025-05-30T05:58:14,199 copying build/lib/maboss/server/client.py -> build/bdist.linux-armv7l/wheel/./maboss/server 2025-05-30T05:58:14,202 copying build/lib/maboss/server/__init__.py -> build/bdist.linux-armv7l/wheel/./maboss/server 2025-05-30T05:58:14,204 copying build/lib/maboss/server/atexit.py -> build/bdist.linux-armv7l/wheel/./maboss/server 2025-05-30T05:58:14,206 copying build/lib/maboss/server/result.py -> build/bdist.linux-armv7l/wheel/./maboss/server 2025-05-30T05:58:14,208 copying build/lib/maboss/figures.py -> build/bdist.linux-armv7l/wheel/./maboss 2025-05-30T05:58:14,211 creating build/bdist.linux-armv7l/wheel/maboss/upp 2025-05-30T05:58:14,212 copying build/lib/maboss/upp/results.py -> build/bdist.linux-armv7l/wheel/./maboss/upp 2025-05-30T05:58:14,215 copying build/lib/maboss/upp/__init__.py -> build/bdist.linux-armv7l/wheel/./maboss/upp 2025-05-30T05:58:14,217 copying build/lib/maboss/upp/upp.py -> build/bdist.linux-armv7l/wheel/./maboss/upp 2025-05-30T05:58:14,219 copying build/lib/maboss/upp/cmaboss_results.py -> build/bdist.linux-armv7l/wheel/./maboss/upp 2025-05-30T05:58:14,222 copying build/lib/maboss/result.py -> build/bdist.linux-armv7l/wheel/./maboss 2025-05-30T05:58:14,224 copying build/lib/maboss_setup_experimental.py -> build/bdist.linux-armv7l/wheel/. 2025-05-30T05:58:14,226 running install_egg_info 2025-05-30T05:58:14,265 running egg_info 2025-05-30T05:58:14,293 writing maboss.egg-info/PKG-INFO 2025-05-30T05:58:14,297 writing dependency_links to maboss.egg-info/dependency_links.txt 2025-05-30T05:58:14,299 writing requirements to maboss.egg-info/requires.txt 2025-05-30T05:58:14,301 writing top-level names to maboss.egg-info/top_level.txt 2025-05-30T05:58:14,339 reading manifest file 'maboss.egg-info/SOURCES.txt' 2025-05-30T05:58:14,344 reading manifest template 'MANIFEST.in' 2025-05-30T05:58:14,345 no previously-included directories found matching 'conda' 2025-05-30T05:58:14,346 no previously-included directories found matching 'notebook' 2025-05-30T05:58:14,346 no previously-included directories found matching 'test' 2025-05-30T05:58:14,347 warning: no previously-included files found matching '.gitignore' 2025-05-30T05:58:14,352 writing manifest file 'maboss.egg-info/SOURCES.txt' 2025-05-30T05:58:14,353 Copying maboss.egg-info to build/bdist.linux-armv7l/wheel/./maboss-0.8.10-py3.11.egg-info 2025-05-30T05:58:14,363 running install_scripts 2025-05-30T05:58:14,364 creating build/bdist.linux-armv7l/wheel/maboss-0.8.10.data/scripts 2025-05-30T05:58:14,366 copying build/scripts-3.11/UpPMaBoSS.py -> build/bdist.linux-armv7l/wheel/maboss-0.8.10.data/scripts 2025-05-30T05:58:14,368 copying build/scripts-3.11/MBSS_FormatTable.py -> build/bdist.linux-armv7l/wheel/maboss-0.8.10.data/scripts 2025-05-30T05:58:14,370 changing mode of build/bdist.linux-armv7l/wheel/maboss-0.8.10.data/scripts/UpPMaBoSS.py to 755 2025-05-30T05:58:14,371 changing mode of build/bdist.linux-armv7l/wheel/maboss-0.8.10.data/scripts/MBSS_FormatTable.py to 755 2025-05-30T05:58:14,381 creating build/bdist.linux-armv7l/wheel/maboss-0.8.10.dist-info/WHEEL 2025-05-30T05:58:14,383 creating '/tmp/pip-wheel-lqpgodat/maboss-0.8.10-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-05-30T05:58:14,385 adding 'maboss_setup.py' 2025-05-30T05:58:14,387 adding 'maboss_setup_experimental.py' 2025-05-30T05:58:14,389 adding 'maboss/__init__.py' 2025-05-30T05:58:14,391 adding 'maboss/bnetsimulation.py' 2025-05-30T05:58:14,392 adding 'maboss/cmabossresult.py' 2025-05-30T05:58:14,394 adding 'maboss/cmabossresult2.py' 2025-05-30T05:58:14,396 adding 'maboss/cmabosssimulation.py' 2025-05-30T05:58:14,398 adding 'maboss/figures.py' 2025-05-30T05:58:14,400 adding 'maboss/gsparser.py' 2025-05-30T05:58:14,401 adding 'maboss/logic.py' 2025-05-30T05:58:14,403 adding 'maboss/network.py' 2025-05-30T05:58:14,405 adding 'maboss/result.py' 2025-05-30T05:58:14,407 adding 'maboss/sbmlcmabossresult.py' 2025-05-30T05:58:14,408 adding 'maboss/sbmlsimulation.py' 2025-05-30T05:58:14,411 adding 'maboss/simulation.py' 2025-05-30T05:58:14,412 adding 'maboss/ui.py' 2025-05-30T05:58:14,414 adding 'maboss/ensemble/__init__.py' 2025-05-30T05:58:14,416 adding 'maboss/ensemble/ensemble.py' 2025-05-30T05:58:14,419 adding 'maboss/ensemble/result.py' 2025-05-30T05:58:14,421 adding 'maboss/pipelines/__init__.py' 2025-05-30T05:58:14,423 adding 'maboss/pop/__init__.py' 2025-05-30T05:58:14,424 adding 'maboss/pop/cmabosspopresult.py' 2025-05-30T05:58:14,426 adding 'maboss/pop/popresult.py' 2025-05-30T05:58:14,428 adding 'maboss/pop/popsimulation.py' 2025-05-30T05:58:14,430 adding 'maboss/pop/storedpopresult.py' 2025-05-30T05:58:14,432 adding 'maboss/results/__init__.py' 2025-05-30T05:58:14,434 adding 'maboss/results/baseresult.py' 2025-05-30T05:58:14,435 adding 'maboss/results/finalresult.py' 2025-05-30T05:58:14,437 adding 'maboss/results/probtrajresult.py' 2025-05-30T05:58:14,439 adding 'maboss/results/statdistresult.py' 2025-05-30T05:58:14,440 adding 'maboss/results/storedresult.py' 2025-05-30T05:58:14,442 adding 'maboss/server/__init__.py' 2025-05-30T05:58:14,443 adding 'maboss/server/atexit.py' 2025-05-30T05:58:14,445 adding 'maboss/server/client.py' 2025-05-30T05:58:14,447 adding 'maboss/server/comm.py' 2025-05-30T05:58:14,448 adding 'maboss/server/result.py' 2025-05-30T05:58:14,450 adding 'maboss/upp/__init__.py' 2025-05-30T05:58:14,453 adding 'maboss/upp/cmaboss_results.py' 2025-05-30T05:58:14,456 adding 'maboss/upp/results.py' 2025-05-30T05:58:14,458 adding 'maboss/upp/upp.py' 2025-05-30T05:58:14,460 adding 'maboss/widgets/__init__.py' 2025-05-30T05:58:14,461 adding 'maboss/widgets/ipywidgets.py' 2025-05-30T05:58:14,463 adding 'maboss/widgets/menu.py' 2025-05-30T05:58:14,465 adding 'maboss-0.8.10.data/scripts/MBSS_FormatTable.py' 2025-05-30T05:58:14,466 adding 'maboss-0.8.10.data/scripts/UpPMaBoSS.py' 2025-05-30T05:58:14,468 adding 'maboss-0.8.10.dist-info/METADATA' 2025-05-30T05:58:14,469 adding 'maboss-0.8.10.dist-info/WHEEL' 2025-05-30T05:58:14,470 adding 'maboss-0.8.10.dist-info/top_level.txt' 2025-05-30T05:58:14,472 adding 'maboss-0.8.10.dist-info/RECORD' 2025-05-30T05:58:14,474 removing build/bdist.linux-armv7l/wheel 2025-05-30T05:58:14,603 Building wheel for maboss (setup.py): finished with status 'done' 2025-05-30T05:58:14,606 Created wheel for maboss: filename=maboss-0.8.10-py3-none-any.whl size=77372 sha256=202610dd7b9ecab1e5ae2523fd66750e0952af343b91d5a3c5690d97af8aea1c 2025-05-30T05:58:14,607 Stored in directory: /tmp/pip-ephem-wheel-cache-4154ymiw/wheels/48/8e/7e/442ed7d4e0c2e7faab2a44d9f9178f232f0c27caf867d42663 2025-05-30T05:58:14,619 Successfully built maboss 2025-05-30T05:58:14,625 Removed build tracker: '/tmp/pip-build-tracker-gi4bcbxw'