2025-05-30T07:23:14,185 Created temporary directory: /tmp/pip-build-tracker-e0fydesp 2025-05-30T07:23:14,186 Initialized build tracking at /tmp/pip-build-tracker-e0fydesp 2025-05-30T07:23:14,187 Created build tracker: /tmp/pip-build-tracker-e0fydesp 2025-05-30T07:23:14,187 Entered build tracker: /tmp/pip-build-tracker-e0fydesp 2025-05-30T07:23:14,188 Created temporary directory: /tmp/pip-wheel-ggi0m6cq 2025-05-30T07:23:14,192 Created temporary directory: /tmp/pip-ephem-wheel-cache-y4l6lglh 2025-05-30T07:23:14,243 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-05-30T07:23:14,246 2 location(s) to search for versions of biobb-dna: 2025-05-30T07:23:14,246 * https://pypi.org/simple/biobb-dna/ 2025-05-30T07:23:14,246 * https://www.piwheels.org/simple/biobb-dna/ 2025-05-30T07:23:14,247 Fetching project page and analyzing links: https://pypi.org/simple/biobb-dna/ 2025-05-30T07:23:14,248 Getting page https://pypi.org/simple/biobb-dna/ 2025-05-30T07:23:14,250 Found index url https://pypi.org/simple/ 2025-05-30T07:23:14,474 Fetched page https://pypi.org/simple/biobb-dna/ as application/vnd.pypi.simple.v1+json 2025-05-30T07:23:14,479 Skipping link: No binaries permitted for biobb-dna: https://files.pythonhosted.org/packages/b3/86/e22799e238cbfb96d042e06d464756d488b72482cd3865be259ff01c092f/biobb_dna-1.0.0-py3-none-any.whl (from https://pypi.org/simple/biobb-dna/) (requires-python:==3.7.*) 2025-05-30T07:23:14,480 Link requires a different Python (3.11.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/59/02/0d0c4ed8be1934d73fb3940691067b83a1efb48905bf98597ec6dec1ec10/biobb_dna-1.0.0.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:==3.7.*) 2025-05-30T07:23:14,481 Skipping link: 1.0.0 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/59/02/0d0c4ed8be1934d73fb3940691067b83a1efb48905bf98597ec6dec1ec10/biobb_dna-1.0.0.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:==3.7.*) 2025-05-30T07:23:14,482 Skipping link: No binaries permitted for biobb-dna: https://files.pythonhosted.org/packages/13/93/24dfc17073933eac7780fc1173593e5056b6566cb8fcebffa21d9f770a2a/biobb_dna-1.1.0-py3-none-any.whl (from https://pypi.org/simple/biobb-dna/) (requires-python:==3.7.*) 2025-05-30T07:23:14,482 Link requires a different Python (3.11.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/ed/47/65866c8ec11fb725732b268e28225f6461e9625a457828faa88910d75036/biobb_dna-1.1.0.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:==3.7.*) 2025-05-30T07:23:14,483 Skipping link: 1.1.0 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/ed/47/65866c8ec11fb725732b268e28225f6461e9625a457828faa88910d75036/biobb_dna-1.1.0.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:==3.7.*) 2025-05-30T07:23:14,484 Skipping link: No binaries permitted for biobb-dna: https://files.pythonhosted.org/packages/81/6c/a6e26da7c07d25cceb6cbb63a2db03362ee9405525df8c8995a5754951db/biobb_dna-1.1.1-py3-none-any.whl (from https://pypi.org/simple/biobb-dna/) (requires-python:==3.7.*) 2025-05-30T07:23:14,484 Link requires a different Python (3.11.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/00/8c/30e106db117be180d240d5a5118bbbd887fee1d13de9e7b9721343139517/biobb_dna-1.1.1.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:==3.7.*) 2025-05-30T07:23:14,485 Skipping link: 1.1.1 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/00/8c/30e106db117be180d240d5a5118bbbd887fee1d13de9e7b9721343139517/biobb_dna-1.1.1.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:==3.7.*) 2025-05-30T07:23:14,486 Skipping link: No binaries permitted for biobb-dna: https://files.pythonhosted.org/packages/56/e8/3cc3a764119e46bfb54f0a2a19aadc6d899dbb74ab6a0cc8aff1d127ef91/biobb_dna-3.6.1-py3-none-any.whl (from https://pypi.org/simple/biobb-dna/) (requires-python:==3.7.*) 2025-05-30T07:23:14,486 Link requires a different Python (3.11.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/71/4e/5b008df78741fa302cfdef36feecbee5e6e4def1bb46ca4f197409a74a27/biobb_dna-3.6.1.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:==3.7.*) 2025-05-30T07:23:14,487 Skipping link: 3.6.1 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/71/4e/5b008df78741fa302cfdef36feecbee5e6e4def1bb46ca4f197409a74a27/biobb_dna-3.6.1.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:==3.7.*) 2025-05-30T07:23:14,488 Skipping link: No binaries permitted for biobb-dna: https://files.pythonhosted.org/packages/17/8f/c92ddf860a4d047909ef0190bcd519ca618d7800a9d49f54f8ebf7575c5f/biobb_dna-3.6.2-py3-none-any.whl (from https://pypi.org/simple/biobb-dna/) (requires-python:==3.7.*) 2025-05-30T07:23:14,488 Link requires a different Python (3.11.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/2f/c7/e83c8ddffe88ed23498c363a5637629436bdffb22d3dfb66456a4dcbf0d9/biobb_dna-3.6.2.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:==3.7.*) 2025-05-30T07:23:14,489 Skipping link: 3.6.2 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/2f/c7/e83c8ddffe88ed23498c363a5637629436bdffb22d3dfb66456a4dcbf0d9/biobb_dna-3.6.2.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:==3.7.*) 2025-05-30T07:23:14,489 Skipping link: No binaries permitted for biobb-dna: https://files.pythonhosted.org/packages/b6/ff/1cea0e2a2c72448367b5aedb272a90b7150506c981c5508833b327052c7f/biobb_dna-3.7.0-py3-none-any.whl (from https://pypi.org/simple/biobb-dna/) (requires-python:==3.7.*) 2025-05-30T07:23:14,490 Link requires a different Python (3.11.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/f3/75/50f131d116ba888160636a8b2da4ef7855490c5bd00fb86ab2cf94700d71/biobb_dna-3.7.0.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:==3.7.*) 2025-05-30T07:23:14,490 Skipping link: 3.7.0 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/f3/75/50f131d116ba888160636a8b2da4ef7855490c5bd00fb86ab2cf94700d71/biobb_dna-3.7.0.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:==3.7.*) 2025-05-30T07:23:14,491 Skipping link: No binaries permitted for biobb-dna: https://files.pythonhosted.org/packages/a8/4b/e50e8dfb86088e9aa160b62f767a7a200444bc0863730b65e83f43bb003d/biobb_dna-3.7.1-py3-none-any.whl (from https://pypi.org/simple/biobb-dna/) (requires-python:==3.7.*) 2025-05-30T07:23:14,492 Link requires a different Python (3.11.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/2b/ab/e439a774eef803f13ef4780796134f59df970d9886a965c0795eeaed0036/biobb_dna-3.7.1.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:==3.7.*) 2025-05-30T07:23:14,492 Skipping link: 3.7.1 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/2b/ab/e439a774eef803f13ef4780796134f59df970d9886a965c0795eeaed0036/biobb_dna-3.7.1.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:==3.7.*) 2025-05-30T07:23:14,493 Skipping link: No binaries permitted for biobb-dna: https://files.pythonhosted.org/packages/da/94/492990dcd8ae5f5f9d60eedfa591c6ce32003f6c87813e2f40f61409d8a0/biobb_dna-3.8.0-py3-none-any.whl (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.7) 2025-05-30T07:23:14,494 Found link https://files.pythonhosted.org/packages/dd/a7/709096c4439e6465a80427da0a1f7351127f3a9d9663199bbc9c93bbaeef/biobb_dna-3.8.0.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.7), version: 3.8.0 2025-05-30T07:23:14,495 Skipping link: No binaries permitted for biobb-dna: https://files.pythonhosted.org/packages/52/16/4ab710397f75e6894772a11994f1c3978bff6456c625de05d2fb5192c582/biobb_dna-3.8.1-py3-none-any.whl (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.7) 2025-05-30T07:23:14,496 Found link https://files.pythonhosted.org/packages/a2/76/2299e0de6bd7e77ce2f626b55cccc0c5f0e8d09fca1caa61e712aa82be56/biobb_dna-3.8.1.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.7), version: 3.8.1 2025-05-30T07:23:14,496 Skipping link: No binaries permitted for biobb-dna: https://files.pythonhosted.org/packages/01/1f/e19d69ba55e98f2a4c7613c3dd6bc34e3fe3c13b427ff0679ef136eb5ebd/biobb_dna-3.8.2-py3-none-any.whl (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.7) 2025-05-30T07:23:14,497 Found link https://files.pythonhosted.org/packages/e7/17/02c98e08c5d87def49ce1b838eeda49b21f17ee3bfadc892579b797a6a3c/biobb_dna-3.8.2.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.7), version: 3.8.2 2025-05-30T07:23:14,498 Skipping link: No binaries permitted for biobb-dna: https://files.pythonhosted.org/packages/74/63/9e100399ec8f50d7fcba39818c6f27421e00ff2bc0c086b39afa6636217a/biobb_dna-3.9.0-py3-none-any.whl (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.7,<3.10) 2025-05-30T07:23:14,499 Link requires a different Python (3.11.2 not in: '>=3.7,<3.10'): https://files.pythonhosted.org/packages/26/0a/bb6609ac290394bd02d32b42b00f45c6483f9f677eea6ac9d41b946a6162/biobb_dna-3.9.0.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.7,<3.10) 2025-05-30T07:23:14,500 Skipping link: 3.9.0 Requires-Python >=3.7,<3.10: https://files.pythonhosted.org/packages/26/0a/bb6609ac290394bd02d32b42b00f45c6483f9f677eea6ac9d41b946a6162/biobb_dna-3.9.0.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.7,<3.10) 2025-05-30T07:23:14,501 Skipping link: No binaries permitted for biobb-dna: https://files.pythonhosted.org/packages/73/fc/01f47893ac3029fd382c365bedecc5210f1a5b8e71e1550a9dfd22695874/biobb_dna-4.0.0-py3-none-any.whl (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.7,<3.10) 2025-05-30T07:23:14,501 Link requires a different Python (3.11.2 not in: '>=3.7,<3.10'): https://files.pythonhosted.org/packages/8b/e4/122357aae8b362e3e252dbfdfaf43ceeb84901c1e961284fab6a21328182/biobb_dna-4.0.0.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.7,<3.10) 2025-05-30T07:23:14,502 Skipping link: 4.0.0 Requires-Python >=3.7,<3.10: https://files.pythonhosted.org/packages/8b/e4/122357aae8b362e3e252dbfdfaf43ceeb84901c1e961284fab6a21328182/biobb_dna-4.0.0.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.7,<3.10) 2025-05-30T07:23:14,502 Skipping link: No binaries permitted for biobb-dna: https://files.pythonhosted.org/packages/51/a8/bf06700a3f45468df9d6ca6d7b59817ba1a64992bad27cd82c5c0af72bd4/biobb_dna-4.1.0-py3-none-any.whl (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.8) 2025-05-30T07:23:14,503 Found link https://files.pythonhosted.org/packages/68/53/b24397eff3a7d7fcf3879d395e60304feb10a571024ca8f1924ad2fedeec/biobb_dna-4.1.0.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.8), version: 4.1.0 2025-05-30T07:23:14,504 Skipping link: No binaries permitted for biobb-dna: https://files.pythonhosted.org/packages/80/fe/4c9c9705ff8fc51b8acc3be707a7b713420627a0a2fef28d110fe0e77131/biobb_dna-4.2.0-py3-none-any.whl (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.8) 2025-05-30T07:23:14,505 Found link https://files.pythonhosted.org/packages/6a/82/fa879d949eb9e7abafa4bb82af940c224fc4e6e19b613d541c2ce048c2cd/biobb_dna-4.2.0.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.8), version: 4.2.0 2025-05-30T07:23:14,506 Skipping link: No binaries permitted for biobb-dna: https://files.pythonhosted.org/packages/19/19/2aac167e22fc609602273f893691ee82a68c72c02945b272a1abbe520a1f/biobb_dna-4.2.1-py3-none-any.whl (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.8) 2025-05-30T07:23:14,506 Found link https://files.pythonhosted.org/packages/24/f8/3c6841cf8ca488ed103426e1b0cbe263899d048bf131ffb4f2f0c4084b99/biobb_dna-4.2.1.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.8), version: 4.2.1 2025-05-30T07:23:14,507 Skipping link: No binaries permitted for biobb-dna: https://files.pythonhosted.org/packages/15/6a/5126a8f72789ccb0269e627266e04f5bd01c3039d264ccab3667570f8dfd/biobb_dna-4.2.2-py3-none-any.whl (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.8) 2025-05-30T07:23:14,507 Found link https://files.pythonhosted.org/packages/99/5c/523255796e940afc9fa3d8881708f109efc7819fdd2156cfbb70df594f05/biobb_dna-4.2.2.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.8), version: 4.2.2 2025-05-30T07:23:14,508 Skipping link: No binaries permitted for biobb-dna: https://files.pythonhosted.org/packages/36/29/107c4134099ab74ba073d9b3091c99717b854910798ca5594d6d7c9b4fb5/biobb_dna-4.2.3-py3-none-any.whl (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.8) 2025-05-30T07:23:14,509 Found link https://files.pythonhosted.org/packages/81/cb/434e774a7f5cadf9ccd04e25ee583836bf974066f5718648f4fefb9b9284/biobb_dna-4.2.3.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.8), version: 4.2.3 2025-05-30T07:23:14,510 Skipping link: No binaries permitted for biobb-dna: https://files.pythonhosted.org/packages/30/e3/c77bd14a52b4f76ae906b7ee21a951c5abed66a4e5a14b3483546aa46805/biobb_dna-4.2.4-py3-none-any.whl (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.8) 2025-05-30T07:23:14,510 Found link https://files.pythonhosted.org/packages/7f/6a/ebd2e3fd8a61e25b8a1cf3a42b82da28a2fbd8bcf27d2a94063b0c573be0/biobb_dna-4.2.4.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.8), version: 4.2.4 2025-05-30T07:23:14,511 Skipping link: No binaries permitted for biobb-dna: https://files.pythonhosted.org/packages/f5/cf/ca0fa070e599602b376c129ede2ee850db6ac30ca0bf9306f5f9419897ba/biobb_dna-5.0.0-py3-none-any.whl (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.9) 2025-05-30T07:23:14,511 Found link https://files.pythonhosted.org/packages/b6/e6/366e1c56eb32a4197dde6d219114e65923a729cbcb93bbbf3d8f03ef0afb/biobb_dna-5.0.0.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.9), version: 5.0.0 2025-05-30T07:23:14,512 Skipping link: No binaries permitted for biobb-dna: https://files.pythonhosted.org/packages/fd/58/75c5b14c74b2af8b5b77e9c54784c0d13b3d46fecb6cdaac8f4a551a40d9/biobb_dna-5.0.1-py3-none-any.whl (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.9) 2025-05-30T07:23:14,513 Found link https://files.pythonhosted.org/packages/07/09/8011b4e1e75f6922ad2f79eddf1f88738e99368639806f34946eb9a9a305/biobb_dna-5.0.1.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.9), version: 5.0.1 2025-05-30T07:23:14,513 Skipping link: No binaries permitted for biobb-dna: https://files.pythonhosted.org/packages/e2/56/c204dbb7fd97d704df11db2564094af9e70e45175ce163d25d7af84d56a4/biobb_dna-5.1.0-py3-none-any.whl (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.9) 2025-05-30T07:23:14,514 Found link https://files.pythonhosted.org/packages/a6/95/1759571018eff5411bdc34d558e3b3b800b3ae6dcaedcf24c99d615b277d/biobb_dna-5.1.0.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.9), version: 5.1.0 2025-05-30T07:23:14,515 Fetching project page and analyzing links: https://www.piwheels.org/simple/biobb-dna/ 2025-05-30T07:23:14,516 Getting page https://www.piwheels.org/simple/biobb-dna/ 2025-05-30T07:23:14,517 Found index url https://www.piwheels.org/simple/ 2025-05-30T07:23:14,666 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biobb-dna/ 2025-05-30T07:23:15,318 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biobb-dna/ 2025-05-30T07:23:16,481 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biobb-dna/ 2025-05-30T07:23:18,702 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biobb-dna/ 2025-05-30T07:23:22,885 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biobb-dna/ 2025-05-30T07:23:23,096 Could not fetch URL https://www.piwheels.org/simple/biobb-dna/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/biobb-dna/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping 2025-05-30T07:23:23,098 Skipping link: not a file: https://www.piwheels.org/simple/biobb-dna/ 2025-05-30T07:23:23,098 Skipping link: not a file: https://pypi.org/simple/biobb-dna/ 2025-05-30T07:23:23,117 Given no hashes to check 1 links for project 'biobb-dna': discarding no candidates 2025-05-30T07:23:23,118 Collecting biobb-dna==5.1.0 2025-05-30T07:23:23,120 Created temporary directory: /tmp/pip-unpack-v4nu_vv9 2025-05-30T07:23:23,339 Downloading biobb_dna-5.1.0.tar.gz (45 kB) 2025-05-30T07:23:23,476 Added biobb-dna==5.1.0 from https://files.pythonhosted.org/packages/a6/95/1759571018eff5411bdc34d558e3b3b800b3ae6dcaedcf24c99d615b277d/biobb_dna-5.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-e0fydesp' 2025-05-30T07:23:23,478 Running setup.py (path:/tmp/pip-wheel-ggi0m6cq/biobb-dna_5ba1e6dea5cc4c92af25e5d625a026f3/setup.py) egg_info for package biobb-dna 2025-05-30T07:23:23,479 Created temporary directory: /tmp/pip-pip-egg-info-0djxr8ux 2025-05-30T07:23:23,479 Preparing metadata (setup.py): started 2025-05-30T07:23:23,480 Running command python setup.py egg_info 2025-05-30T07:23:24,364 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-05-30T07:23:24,364 !! 2025-05-30T07:23:24,365 ******************************************************************************** 2025-05-30T07:23:24,366 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-05-30T07:23:24,367 License :: OSI Approved :: Apache Software License 2025-05-30T07:23:24,368 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-05-30T07:23:24,369 ******************************************************************************** 2025-05-30T07:23:24,370 !! 2025-05-30T07:23:24,370 self._finalize_license_expression() 2025-05-30T07:23:24,392 running egg_info 2025-05-30T07:23:24,419 creating /tmp/pip-pip-egg-info-0djxr8ux/biobb_dna.egg-info 2025-05-30T07:23:24,420 writing /tmp/pip-pip-egg-info-0djxr8ux/biobb_dna.egg-info/PKG-INFO 2025-05-30T07:23:24,424 writing dependency_links to /tmp/pip-pip-egg-info-0djxr8ux/biobb_dna.egg-info/dependency_links.txt 2025-05-30T07:23:24,426 writing entry points to /tmp/pip-pip-egg-info-0djxr8ux/biobb_dna.egg-info/entry_points.txt 2025-05-30T07:23:24,427 writing requirements to /tmp/pip-pip-egg-info-0djxr8ux/biobb_dna.egg-info/requires.txt 2025-05-30T07:23:24,428 writing top-level names to /tmp/pip-pip-egg-info-0djxr8ux/biobb_dna.egg-info/top_level.txt 2025-05-30T07:23:24,430 writing manifest file '/tmp/pip-pip-egg-info-0djxr8ux/biobb_dna.egg-info/SOURCES.txt' 2025-05-30T07:23:24,523 reading manifest file '/tmp/pip-pip-egg-info-0djxr8ux/biobb_dna.egg-info/SOURCES.txt' 2025-05-30T07:23:24,525 adding license file 'LICENSE' 2025-05-30T07:23:24,528 writing manifest file '/tmp/pip-pip-egg-info-0djxr8ux/biobb_dna.egg-info/SOURCES.txt' 2025-05-30T07:23:24,636 Preparing metadata (setup.py): finished with status 'done' 2025-05-30T07:23:24,640 Source in /tmp/pip-wheel-ggi0m6cq/biobb-dna_5ba1e6dea5cc4c92af25e5d625a026f3 has version 5.1.0, which satisfies requirement biobb-dna==5.1.0 from https://files.pythonhosted.org/packages/a6/95/1759571018eff5411bdc34d558e3b3b800b3ae6dcaedcf24c99d615b277d/biobb_dna-5.1.0.tar.gz 2025-05-30T07:23:24,641 Removed biobb-dna==5.1.0 from https://files.pythonhosted.org/packages/a6/95/1759571018eff5411bdc34d558e3b3b800b3ae6dcaedcf24c99d615b277d/biobb_dna-5.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-e0fydesp' 2025-05-30T07:23:24,648 Created temporary directory: /tmp/pip-unpack-wov9xf__ 2025-05-30T07:23:24,649 Created temporary directory: /tmp/pip-unpack-vz4mxjzy 2025-05-30T07:23:24,650 Building wheels for collected packages: biobb-dna 2025-05-30T07:23:24,653 Created temporary directory: /tmp/pip-wheel-syqdiw90 2025-05-30T07:23:24,654 DEPRECATION: Building 'biobb-dna' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'biobb-dna'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-05-30T07:23:24,655 Building wheel for biobb-dna (setup.py): started 2025-05-30T07:23:24,656 Destination directory: /tmp/pip-wheel-syqdiw90 2025-05-30T07:23:24,657 Running command python setup.py bdist_wheel 2025-05-30T07:23:25,462 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-05-30T07:23:25,462 !! 2025-05-30T07:23:25,463 ******************************************************************************** 2025-05-30T07:23:25,464 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-05-30T07:23:25,465 License :: OSI Approved :: Apache Software License 2025-05-30T07:23:25,466 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-05-30T07:23:25,467 ******************************************************************************** 2025-05-30T07:23:25,468 !! 2025-05-30T07:23:25,469 self._finalize_license_expression() 2025-05-30T07:23:25,469 running bdist_wheel 2025-05-30T07:23:25,595 running build 2025-05-30T07:23:25,596 running build_py 2025-05-30T07:23:25,626 creating build/lib/biobb_dna 2025-05-30T07:23:25,628 copying biobb_dna/__init__.py -> build/lib/biobb_dna 2025-05-30T07:23:25,630 creating build/lib/biobb_dna/test 2025-05-30T07:23:25,631 copying biobb_dna/test/__init__.py -> build/lib/biobb_dna/test 2025-05-30T07:23:25,634 creating build/lib/biobb_dna/interbp_correlations 2025-05-30T07:23:25,635 copying biobb_dna/interbp_correlations/interseqcorr.py -> build/lib/biobb_dna/interbp_correlations 2025-05-30T07:23:25,637 copying biobb_dna/interbp_correlations/interhpcorr.py -> build/lib/biobb_dna/interbp_correlations 2025-05-30T07:23:25,640 copying biobb_dna/interbp_correlations/__init__.py -> build/lib/biobb_dna/interbp_correlations 2025-05-30T07:23:25,642 copying biobb_dna/interbp_correlations/interbpcorr.py -> build/lib/biobb_dna/interbp_correlations 2025-05-30T07:23:25,645 creating build/lib/biobb_dna/utils 2025-05-30T07:23:25,646 copying biobb_dna/utils/common.py -> build/lib/biobb_dna/utils 2025-05-30T07:23:25,648 copying biobb_dna/utils/transform.py -> build/lib/biobb_dna/utils 2025-05-30T07:23:25,649 copying biobb_dna/utils/loader.py -> build/lib/biobb_dna/utils 2025-05-30T07:23:25,651 copying biobb_dna/utils/__init__.py -> build/lib/biobb_dna/utils 2025-05-30T07:23:25,653 copying biobb_dna/utils/constants.py -> build/lib/biobb_dna/utils 2025-05-30T07:23:25,655 creating build/lib/biobb_dna/dna 2025-05-30T07:23:25,656 copying biobb_dna/dna/dna_bimodality.py -> build/lib/biobb_dna/dna 2025-05-30T07:23:25,659 copying biobb_dna/dna/dna_timeseries_unzip.py -> build/lib/biobb_dna/dna 2025-05-30T07:23:25,661 copying biobb_dna/dna/__init__.py -> build/lib/biobb_dna/dna 2025-05-30T07:23:25,663 copying biobb_dna/dna/dna_averages.py -> build/lib/biobb_dna/dna 2025-05-30T07:23:25,665 copying biobb_dna/dna/dna_timeseries.py -> build/lib/biobb_dna/dna 2025-05-30T07:23:25,668 creating build/lib/biobb_dna/backbone 2025-05-30T07:23:25,669 copying biobb_dna/backbone/canonicalag.py -> build/lib/biobb_dna/backbone 2025-05-30T07:23:25,671 copying biobb_dna/backbone/__init__.py -> build/lib/biobb_dna/backbone 2025-05-30T07:23:25,673 copying biobb_dna/backbone/bipopulations.py -> build/lib/biobb_dna/backbone 2025-05-30T07:23:25,676 copying biobb_dna/backbone/puckering.py -> build/lib/biobb_dna/backbone 2025-05-30T07:23:25,679 creating build/lib/biobb_dna/curvesplus 2025-05-30T07:23:25,680 copying biobb_dna/curvesplus/biobb_curves.py -> build/lib/biobb_dna/curvesplus 2025-05-30T07:23:25,682 copying biobb_dna/curvesplus/__init__.py -> build/lib/biobb_dna/curvesplus 2025-05-30T07:23:25,684 copying biobb_dna/curvesplus/biobb_canal.py -> build/lib/biobb_dna/curvesplus 2025-05-30T07:23:25,686 copying biobb_dna/curvesplus/biobb_canion.py -> build/lib/biobb_dna/curvesplus 2025-05-30T07:23:25,688 copying biobb_dna/curvesplus/canal_unzip.py -> build/lib/biobb_dna/curvesplus 2025-05-30T07:23:25,691 creating build/lib/biobb_dna/intrabp_correlations 2025-05-30T07:23:25,692 copying biobb_dna/intrabp_correlations/intrabpcorr.py -> build/lib/biobb_dna/intrabp_correlations 2025-05-30T07:23:25,694 copying biobb_dna/intrabp_correlations/intraseqcorr.py -> build/lib/biobb_dna/intrabp_correlations 2025-05-30T07:23:25,697 copying biobb_dna/intrabp_correlations/__init__.py -> build/lib/biobb_dna/intrabp_correlations 2025-05-30T07:23:25,698 copying biobb_dna/intrabp_correlations/intrahpcorr.py -> build/lib/biobb_dna/intrabp_correlations 2025-05-30T07:23:25,702 creating build/lib/biobb_dna/stiffness 2025-05-30T07:23:25,703 copying biobb_dna/stiffness/basepair_stiffness.py -> build/lib/biobb_dna/stiffness 2025-05-30T07:23:25,705 copying biobb_dna/stiffness/__init__.py -> build/lib/biobb_dna/stiffness 2025-05-30T07:23:25,707 copying biobb_dna/stiffness/average_stiffness.py -> build/lib/biobb_dna/stiffness 2025-05-30T07:23:25,714 copying biobb_dna/py.typed -> build/lib/biobb_dna 2025-05-30T07:23:25,746 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-05-30T07:23:25,747 !! 2025-05-30T07:23:25,748 ******************************************************************************** 2025-05-30T07:23:25,748 Please avoid running ``setup.py`` directly. 2025-05-30T07:23:25,749 Instead, use pypa/build, pypa/installer or other 2025-05-30T07:23:25,750 standards-based tools. 2025-05-30T07:23:25,751 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-05-30T07:23:25,751 or your builds will no longer be supported. 2025-05-30T07:23:25,752 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-05-30T07:23:25,753 ******************************************************************************** 2025-05-30T07:23:25,754 !! 2025-05-30T07:23:25,755 self.initialize_options() 2025-05-30T07:23:25,774 installing to build/bdist.linux-armv7l/wheel 2025-05-30T07:23:25,774 running install 2025-05-30T07:23:25,798 running install_lib 2025-05-30T07:23:25,824 creating build/bdist.linux-armv7l/wheel 2025-05-30T07:23:25,826 creating build/bdist.linux-armv7l/wheel/biobb_dna 2025-05-30T07:23:25,828 creating build/bdist.linux-armv7l/wheel/biobb_dna/test 2025-05-30T07:23:25,829 copying build/lib/biobb_dna/test/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/test 2025-05-30T07:23:25,831 creating build/bdist.linux-armv7l/wheel/biobb_dna/interbp_correlations 2025-05-30T07:23:25,832 copying build/lib/biobb_dna/interbp_correlations/interseqcorr.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/interbp_correlations 2025-05-30T07:23:25,835 copying build/lib/biobb_dna/interbp_correlations/interhpcorr.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/interbp_correlations 2025-05-30T07:23:25,838 copying build/lib/biobb_dna/interbp_correlations/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/interbp_correlations 2025-05-30T07:23:25,840 copying build/lib/biobb_dna/interbp_correlations/interbpcorr.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/interbp_correlations 2025-05-30T07:23:25,842 copying build/lib/biobb_dna/py.typed -> build/bdist.linux-armv7l/wheel/./biobb_dna 2025-05-30T07:23:25,844 creating build/bdist.linux-armv7l/wheel/biobb_dna/utils 2025-05-30T07:23:25,845 copying build/lib/biobb_dna/utils/common.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/utils 2025-05-30T07:23:25,846 copying build/lib/biobb_dna/utils/transform.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/utils 2025-05-30T07:23:25,848 copying build/lib/biobb_dna/utils/loader.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/utils 2025-05-30T07:23:25,850 copying build/lib/biobb_dna/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/utils 2025-05-30T07:23:25,851 copying build/lib/biobb_dna/utils/constants.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/utils 2025-05-30T07:23:25,853 copying build/lib/biobb_dna/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_dna 2025-05-30T07:23:25,855 creating build/bdist.linux-armv7l/wheel/biobb_dna/dna 2025-05-30T07:23:25,856 copying build/lib/biobb_dna/dna/dna_bimodality.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/dna 2025-05-30T07:23:25,858 copying build/lib/biobb_dna/dna/dna_timeseries_unzip.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/dna 2025-05-30T07:23:25,860 copying build/lib/biobb_dna/dna/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/dna 2025-05-30T07:23:25,862 copying build/lib/biobb_dna/dna/dna_averages.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/dna 2025-05-30T07:23:25,865 copying build/lib/biobb_dna/dna/dna_timeseries.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/dna 2025-05-30T07:23:25,868 creating build/bdist.linux-armv7l/wheel/biobb_dna/backbone 2025-05-30T07:23:25,869 copying build/lib/biobb_dna/backbone/canonicalag.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/backbone 2025-05-30T07:23:25,871 copying build/lib/biobb_dna/backbone/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/backbone 2025-05-30T07:23:25,873 copying build/lib/biobb_dna/backbone/bipopulations.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/backbone 2025-05-30T07:23:25,875 copying build/lib/biobb_dna/backbone/puckering.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/backbone 2025-05-30T07:23:25,879 creating build/bdist.linux-armv7l/wheel/biobb_dna/curvesplus 2025-05-30T07:23:25,880 copying build/lib/biobb_dna/curvesplus/biobb_curves.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/curvesplus 2025-05-30T07:23:25,882 copying build/lib/biobb_dna/curvesplus/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/curvesplus 2025-05-30T07:23:25,884 copying build/lib/biobb_dna/curvesplus/biobb_canal.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/curvesplus 2025-05-30T07:23:25,886 copying build/lib/biobb_dna/curvesplus/biobb_canion.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/curvesplus 2025-05-30T07:23:25,889 copying build/lib/biobb_dna/curvesplus/canal_unzip.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/curvesplus 2025-05-30T07:23:25,891 creating build/bdist.linux-armv7l/wheel/biobb_dna/intrabp_correlations 2025-05-30T07:23:25,892 copying build/lib/biobb_dna/intrabp_correlations/intrabpcorr.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/intrabp_correlations 2025-05-30T07:23:25,895 copying build/lib/biobb_dna/intrabp_correlations/intraseqcorr.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/intrabp_correlations 2025-05-30T07:23:25,897 copying build/lib/biobb_dna/intrabp_correlations/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/intrabp_correlations 2025-05-30T07:23:25,899 copying build/lib/biobb_dna/intrabp_correlations/intrahpcorr.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/intrabp_correlations 2025-05-30T07:23:25,902 creating build/bdist.linux-armv7l/wheel/biobb_dna/stiffness 2025-05-30T07:23:25,903 copying build/lib/biobb_dna/stiffness/basepair_stiffness.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/stiffness 2025-05-30T07:23:25,905 copying build/lib/biobb_dna/stiffness/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/stiffness 2025-05-30T07:23:25,907 copying build/lib/biobb_dna/stiffness/average_stiffness.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/stiffness 2025-05-30T07:23:25,909 running install_egg_info 2025-05-30T07:23:25,942 running egg_info 2025-05-30T07:23:25,968 writing biobb_dna.egg-info/PKG-INFO 2025-05-30T07:23:25,971 writing dependency_links to biobb_dna.egg-info/dependency_links.txt 2025-05-30T07:23:25,973 writing entry points to biobb_dna.egg-info/entry_points.txt 2025-05-30T07:23:25,975 writing requirements to biobb_dna.egg-info/requires.txt 2025-05-30T07:23:25,976 writing top-level names to biobb_dna.egg-info/top_level.txt 2025-05-30T07:23:26,011 reading manifest file 'biobb_dna.egg-info/SOURCES.txt' 2025-05-30T07:23:26,014 adding license file 'LICENSE' 2025-05-30T07:23:26,018 writing manifest file 'biobb_dna.egg-info/SOURCES.txt' 2025-05-30T07:23:26,020 Copying biobb_dna.egg-info to build/bdist.linux-armv7l/wheel/./biobb_dna-5.1.0-py3.11.egg-info 2025-05-30T07:23:26,030 running install_scripts 2025-05-30T07:23:26,043 creating build/bdist.linux-armv7l/wheel/biobb_dna-5.1.0.dist-info/WHEEL 2025-05-30T07:23:26,045 creating '/tmp/pip-wheel-syqdiw90/biobb_dna-5.1.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-05-30T07:23:26,048 adding 'biobb_dna/__init__.py' 2025-05-30T07:23:26,049 adding 'biobb_dna/py.typed' 2025-05-30T07:23:26,051 adding 'biobb_dna/backbone/__init__.py' 2025-05-30T07:23:26,053 adding 'biobb_dna/backbone/bipopulations.py' 2025-05-30T07:23:26,055 adding 'biobb_dna/backbone/canonicalag.py' 2025-05-30T07:23:26,057 adding 'biobb_dna/backbone/puckering.py' 2025-05-30T07:23:26,059 adding 'biobb_dna/curvesplus/__init__.py' 2025-05-30T07:23:26,061 adding 'biobb_dna/curvesplus/biobb_canal.py' 2025-05-30T07:23:26,063 adding 'biobb_dna/curvesplus/biobb_canion.py' 2025-05-30T07:23:26,065 adding 'biobb_dna/curvesplus/biobb_curves.py' 2025-05-30T07:23:26,067 adding 'biobb_dna/curvesplus/canal_unzip.py' 2025-05-30T07:23:26,068 adding 'biobb_dna/dna/__init__.py' 2025-05-30T07:23:26,070 adding 'biobb_dna/dna/dna_averages.py' 2025-05-30T07:23:26,072 adding 'biobb_dna/dna/dna_bimodality.py' 2025-05-30T07:23:26,074 adding 'biobb_dna/dna/dna_timeseries.py' 2025-05-30T07:23:26,076 adding 'biobb_dna/dna/dna_timeseries_unzip.py' 2025-05-30T07:23:26,078 adding 'biobb_dna/interbp_correlations/__init__.py' 2025-05-30T07:23:26,080 adding 'biobb_dna/interbp_correlations/interbpcorr.py' 2025-05-30T07:23:26,083 adding 'biobb_dna/interbp_correlations/interhpcorr.py' 2025-05-30T07:23:26,085 adding 'biobb_dna/interbp_correlations/interseqcorr.py' 2025-05-30T07:23:26,086 adding 'biobb_dna/intrabp_correlations/__init__.py' 2025-05-30T07:23:26,088 adding 'biobb_dna/intrabp_correlations/intrabpcorr.py' 2025-05-30T07:23:26,091 adding 'biobb_dna/intrabp_correlations/intrahpcorr.py' 2025-05-30T07:23:26,093 adding 'biobb_dna/intrabp_correlations/intraseqcorr.py' 2025-05-30T07:23:26,095 adding 'biobb_dna/stiffness/__init__.py' 2025-05-30T07:23:26,096 adding 'biobb_dna/stiffness/average_stiffness.py' 2025-05-30T07:23:26,098 adding 'biobb_dna/stiffness/basepair_stiffness.py' 2025-05-30T07:23:26,100 adding 'biobb_dna/test/__init__.py' 2025-05-30T07:23:26,101 adding 'biobb_dna/utils/__init__.py' 2025-05-30T07:23:26,103 adding 'biobb_dna/utils/common.py' 2025-05-30T07:23:26,104 adding 'biobb_dna/utils/constants.py' 2025-05-30T07:23:26,105 adding 'biobb_dna/utils/loader.py' 2025-05-30T07:23:26,106 adding 'biobb_dna/utils/transform.py' 2025-05-30T07:23:26,110 adding 'biobb_dna-5.1.0.dist-info/licenses/LICENSE' 2025-05-30T07:23:26,111 adding 'biobb_dna-5.1.0.dist-info/METADATA' 2025-05-30T07:23:26,112 adding 'biobb_dna-5.1.0.dist-info/WHEEL' 2025-05-30T07:23:26,113 adding 'biobb_dna-5.1.0.dist-info/entry_points.txt' 2025-05-30T07:23:26,114 adding 'biobb_dna-5.1.0.dist-info/top_level.txt' 2025-05-30T07:23:26,115 adding 'biobb_dna-5.1.0.dist-info/RECORD' 2025-05-30T07:23:26,118 removing build/bdist.linux-armv7l/wheel 2025-05-30T07:23:26,237 Building wheel for biobb-dna (setup.py): finished with status 'done' 2025-05-30T07:23:26,241 Created wheel for biobb-dna: filename=biobb_dna-5.1.0-py3-none-any.whl size=82774 sha256=c260516a48309267d3ff3c7778adefde051e9193a26e60ae4f45f1f571028a75 2025-05-30T07:23:26,242 Stored in directory: /tmp/pip-ephem-wheel-cache-y4l6lglh/wheels/71/d4/86/fb1a3cbb9409183673c1a653643cdcfb8130ec1ae8b2f8930a 2025-05-30T07:23:26,255 Successfully built biobb-dna 2025-05-30T07:23:26,261 Removed build tracker: '/tmp/pip-build-tracker-e0fydesp'