2025-05-30T18:04:43,912 Created temporary directory: /tmp/pip-build-tracker-d5zm07v_
2025-05-30T18:04:43,914 Initialized build tracking at /tmp/pip-build-tracker-d5zm07v_
2025-05-30T18:04:43,914 Created build tracker: /tmp/pip-build-tracker-d5zm07v_
2025-05-30T18:04:43,915 Entered build tracker: /tmp/pip-build-tracker-d5zm07v_
2025-05-30T18:04:43,916 Created temporary directory: /tmp/pip-wheel-sfw_if26
2025-05-30T18:04:43,923 Created temporary directory: /tmp/pip-ephem-wheel-cache-c3yons9o
2025-05-30T18:04:43,989 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-05-30T18:04:43,991 2 location(s) to search for versions of strucgap:
2025-05-30T18:04:43,991 * https://pypi.org/simple/strucgap/
2025-05-30T18:04:43,991 * https://www.piwheels.org/simple/strucgap/
2025-05-30T18:04:43,992 Fetching project page and analyzing links: https://pypi.org/simple/strucgap/
2025-05-30T18:04:43,993 Getting page https://pypi.org/simple/strucgap/
2025-05-30T18:04:43,994 Found index url https://pypi.org/simple/
2025-05-30T18:04:44,234 Fetched page https://pypi.org/simple/strucgap/ as application/vnd.pypi.simple.v1+json
2025-05-30T18:04:44,241   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/d4/cf/908ee965464dceab500051b070d301fc648f14f165918a250643f754312c/strucgap-1.0.1-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-05-30T18:04:44,243   Found link https://files.pythonhosted.org/packages/e4/ed/c84c67d5cb18aa5d6c871bc5abb254e198230535214a7cf8f003ecf813ae/strucgap-1.0.1.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.1
2025-05-30T18:04:44,244   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/e6/0a/417b6b5e0043e5a5e92598e60b289e11bbf3a1921db8a06967ac26c821ab/strucgap-1.0.2-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-05-30T18:04:44,245   Found link https://files.pythonhosted.org/packages/80/b5/c0a8aca19ac9b3b37852926dab5aef22813bfb7db17e022907b7513751cd/strucgap-1.0.2.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.2
2025-05-30T18:04:44,246   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/6c/8a/8046fc9d7585c40b76f94bcc0f51462b26b460ef72eaba283adc359b1414/strucgap-1.0.3-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-05-30T18:04:44,247   Found link https://files.pythonhosted.org/packages/36/64/97df6dbf736d30b1ed5a0f11b09513d266c5451783575b47fadd5ba720f7/strucgap-1.0.3.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.3
2025-05-30T18:04:44,248   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/4c/cf/29374aca5d9a6e4dcb92da71d7c737883fea9dc0c784add2f46b047bcdb3/strucgap-1.0.4-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-05-30T18:04:44,249   Found link https://files.pythonhosted.org/packages/f7/a4/54678a7f65da22ad9bf8c1fbc22ff415a1c4c59b190aa2cc0ab02bc71a27/strucgap-1.0.4.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.4
2025-05-30T18:04:44,251   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/3e/0a/acfe362babd9946aee23c5c9b973b22704fdd4625b21d3aefc3158469a8f/strucgap-1.0.5-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-05-30T18:04:44,252   Found link https://files.pythonhosted.org/packages/31/14/c9640736615f7b3cd7300f1146d0f6c3c707a24e604b663635e89fb72f74/strucgap-1.0.5.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.5
2025-05-30T18:04:44,253   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/19/2b/a229156141e4f96b442c92afa912d9dc7ff7ca93d4fd40498b412eb2e492/strucgap-1.0.6-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-05-30T18:04:44,253   Found link https://files.pythonhosted.org/packages/47/e1/49002ee8fee4ea83a29298aeadb5da1cad51e30702a716412b435796e909/strucgap-1.0.6.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.6
2025-05-30T18:04:44,254   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/f5/96/a6e1a5e8ddaa8319d34850b3a6ee7abc4cb4a45cab48147b26c76a355af2/strucgap-1.0.7-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-05-30T18:04:44,255   Found link https://files.pythonhosted.org/packages/61/54/ca1a7a265a6b1ab75b75bd1d707aa4d66a91f69dd4491dbcd23a5b1d96bc/strucgap-1.0.7.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.7
2025-05-30T18:04:44,255   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/a5/9d/28f80481e570ce67b245dc87afdefa13a5a3200a6f53baccfdd8d7683250/strucgap-1.0.8-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-05-30T18:04:44,256   Found link https://files.pythonhosted.org/packages/f3/20/5427f3d9632c77f35f2d3d0565ebdf4c63366100b5c96fa50ebdfcc6a8a2/strucgap-1.0.8.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.8
2025-05-30T18:04:44,257 Fetching project page and analyzing links: https://www.piwheels.org/simple/strucgap/
2025-05-30T18:04:44,257 Getting page https://www.piwheels.org/simple/strucgap/
2025-05-30T18:04:44,258 Found index url https://www.piwheels.org/simple/
2025-05-30T18:04:44,420 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/strucgap/
2025-05-30T18:04:45,119 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/strucgap/
2025-05-30T18:04:46,283 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/strucgap/
2025-05-30T18:04:48,492 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/strucgap/
2025-05-30T18:04:52,664 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/strucgap/
2025-05-30T18:04:52,835 Could not fetch URL https://www.piwheels.org/simple/strucgap/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/strucgap/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping
2025-05-30T18:04:52,837 Skipping link: not a file: https://www.piwheels.org/simple/strucgap/
2025-05-30T18:04:52,838 Skipping link: not a file: https://pypi.org/simple/strucgap/
2025-05-30T18:04:52,861 Given no hashes to check 1 links for project 'strucgap': discarding no candidates
2025-05-30T18:04:52,863 Collecting strucgap==1.0.7
2025-05-30T18:04:52,865   Created temporary directory: /tmp/pip-unpack-ol2_wsr9
2025-05-30T18:04:53,091   Downloading strucgap-1.0.7.tar.gz (115 kB)
2025-05-30T18:04:53,228   Added strucgap==1.0.7 from https://files.pythonhosted.org/packages/61/54/ca1a7a265a6b1ab75b75bd1d707aa4d66a91f69dd4491dbcd23a5b1d96bc/strucgap-1.0.7.tar.gz to build tracker '/tmp/pip-build-tracker-d5zm07v_'
2025-05-30T18:04:53,230   Running setup.py (path:/tmp/pip-wheel-sfw_if26/strucgap_6cbe8ab1cebb45ce9202cfe71ded1966/setup.py) egg_info for package strucgap
2025-05-30T18:04:53,231   Created temporary directory: /tmp/pip-pip-egg-info-5hlthavb
2025-05-30T18:04:53,232   Preparing metadata (setup.py): started
2025-05-30T18:04:53,233   Running command python setup.py egg_info
2025-05-30T18:04:54,073   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-05-30T18:04:54,073   !!

2025-05-30T18:04:54,074           ********************************************************************************
2025-05-30T18:04:54,075           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-05-30T18:04:54,076           License :: OSI Approved :: MIT License

2025-05-30T18:04:54,077           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-05-30T18:04:54,077           ********************************************************************************

2025-05-30T18:04:54,078   !!
2025-05-30T18:04:54,079     self._finalize_license_expression()
2025-05-30T18:04:54,107   running egg_info
2025-05-30T18:04:54,137   creating /tmp/pip-pip-egg-info-5hlthavb/strucgap.egg-info
2025-05-30T18:04:54,139   writing /tmp/pip-pip-egg-info-5hlthavb/strucgap.egg-info/PKG-INFO
2025-05-30T18:04:54,143   writing dependency_links to /tmp/pip-pip-egg-info-5hlthavb/strucgap.egg-info/dependency_links.txt
2025-05-30T18:04:54,146   writing requirements to /tmp/pip-pip-egg-info-5hlthavb/strucgap.egg-info/requires.txt
2025-05-30T18:04:54,148   writing top-level names to /tmp/pip-pip-egg-info-5hlthavb/strucgap.egg-info/top_level.txt
2025-05-30T18:04:54,150   writing manifest file '/tmp/pip-pip-egg-info-5hlthavb/strucgap.egg-info/SOURCES.txt'
2025-05-30T18:04:54,392   reading manifest file '/tmp/pip-pip-egg-info-5hlthavb/strucgap.egg-info/SOURCES.txt'
2025-05-30T18:04:54,397   writing manifest file '/tmp/pip-pip-egg-info-5hlthavb/strucgap.egg-info/SOURCES.txt'
2025-05-30T18:04:54,505   Preparing metadata (setup.py): finished with status 'done'
2025-05-30T18:04:54,510   Source in /tmp/pip-wheel-sfw_if26/strucgap_6cbe8ab1cebb45ce9202cfe71ded1966 has version 1.0.7, which satisfies requirement strucgap==1.0.7 from https://files.pythonhosted.org/packages/61/54/ca1a7a265a6b1ab75b75bd1d707aa4d66a91f69dd4491dbcd23a5b1d96bc/strucgap-1.0.7.tar.gz
2025-05-30T18:04:54,511   Removed strucgap==1.0.7 from https://files.pythonhosted.org/packages/61/54/ca1a7a265a6b1ab75b75bd1d707aa4d66a91f69dd4491dbcd23a5b1d96bc/strucgap-1.0.7.tar.gz from build tracker '/tmp/pip-build-tracker-d5zm07v_'
2025-05-30T18:04:54,521 Created temporary directory: /tmp/pip-unpack-bducbo9e
2025-05-30T18:04:54,522 Created temporary directory: /tmp/pip-unpack-vme97fw2
2025-05-30T18:04:54,522 Building wheels for collected packages: strucgap
2025-05-30T18:04:54,527   Created temporary directory: /tmp/pip-wheel-4xo187i6
2025-05-30T18:04:54,528   DEPRECATION: Building 'strucgap' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'strucgap'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-05-30T18:04:54,529   Building wheel for strucgap (setup.py): started
2025-05-30T18:04:54,530   Destination directory: /tmp/pip-wheel-4xo187i6
2025-05-30T18:04:54,531   Running command python setup.py bdist_wheel
2025-05-30T18:04:55,391   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-05-30T18:04:55,391   !!

2025-05-30T18:04:55,392           ********************************************************************************
2025-05-30T18:04:55,393           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-05-30T18:04:55,395           License :: OSI Approved :: MIT License

2025-05-30T18:04:55,396           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-05-30T18:04:55,396           ********************************************************************************

2025-05-30T18:04:55,397   !!
2025-05-30T18:04:55,398     self._finalize_license_expression()
2025-05-30T18:04:55,398   running bdist_wheel
2025-05-30T18:04:55,530   running build
2025-05-30T18:04:55,530   running build_py
2025-05-30T18:04:55,561   creating build/lib/strucgap
2025-05-30T18:04:55,563   copying strucgap/preprocess.py -> build/lib/strucgap
2025-05-30T18:04:55,566   copying strucgap/glyconetwork.py -> build/lib/strucgap
2025-05-30T18:04:55,570   copying strucgap/__init__.py -> build/lib/strucgap
2025-05-30T18:04:55,572   copying strucgap/glycopeptidequant.py -> build/lib/strucgap
2025-05-30T18:04:55,576   copying strucgap/datavisualization.py -> build/lib/strucgap
2025-05-30T18:04:55,587   copying strucgap/functionannotation.py -> build/lib/strucgap
2025-05-30T18:04:55,593   copying strucgap/glycosite.py -> build/lib/strucgap
2025-05-30T18:04:55,596   copying strucgap/glycanstructure.py -> build/lib/strucgap
2025-05-30T18:04:55,600   copying strucgap/insighttracker.py -> build/lib/strucgap
2025-05-30T18:04:55,633   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-05-30T18:04:55,634   !!

2025-05-30T18:04:55,635           ********************************************************************************
2025-05-30T18:04:55,635           Please avoid running ``setup.py`` directly.
2025-05-30T18:04:55,636           Instead, use pypa/build, pypa/installer or other
2025-05-30T18:04:55,637           standards-based tools.

2025-05-30T18:04:55,638           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-05-30T18:04:55,638           or your builds will no longer be supported.

2025-05-30T18:04:55,639           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-05-30T18:04:55,640           ********************************************************************************

2025-05-30T18:04:55,641   !!
2025-05-30T18:04:55,642     self.initialize_options()
2025-05-30T18:04:55,663   installing to build/bdist.linux-armv7l/wheel
2025-05-30T18:04:55,663   running install
2025-05-30T18:04:55,688   running install_lib
2025-05-30T18:04:55,715   creating build/bdist.linux-armv7l/wheel
2025-05-30T18:04:55,718   creating build/bdist.linux-armv7l/wheel/strucgap
2025-05-30T18:04:55,719   copying build/lib/strucgap/preprocess.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-05-30T18:04:55,722   copying build/lib/strucgap/glyconetwork.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-05-30T18:04:55,725   copying build/lib/strucgap/__init__.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-05-30T18:04:55,727   copying build/lib/strucgap/glycopeptidequant.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-05-30T18:04:55,732   copying build/lib/strucgap/datavisualization.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-05-30T18:04:55,739   copying build/lib/strucgap/functionannotation.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-05-30T18:04:55,743   copying build/lib/strucgap/glycosite.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-05-30T18:04:55,746   copying build/lib/strucgap/glycanstructure.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-05-30T18:04:55,750   copying build/lib/strucgap/insighttracker.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-05-30T18:04:55,753   running install_egg_info
2025-05-30T18:04:55,792   running egg_info
2025-05-30T18:04:55,822   writing strucgap.egg-info/PKG-INFO
2025-05-30T18:04:55,825   writing dependency_links to strucgap.egg-info/dependency_links.txt
2025-05-30T18:04:55,827   writing requirements to strucgap.egg-info/requires.txt
2025-05-30T18:04:55,829   writing top-level names to strucgap.egg-info/top_level.txt
2025-05-30T18:04:55,861   reading manifest file 'strucgap.egg-info/SOURCES.txt'
2025-05-30T18:04:55,867   writing manifest file 'strucgap.egg-info/SOURCES.txt'
2025-05-30T18:04:55,868   Copying strucgap.egg-info to build/bdist.linux-armv7l/wheel/./strucgap-1.0.7-py3.11.egg-info
2025-05-30T18:04:55,878   running install_scripts
2025-05-30T18:04:55,888   creating build/bdist.linux-armv7l/wheel/strucgap-1.0.7.dist-info/WHEEL
2025-05-30T18:04:55,891   creating '/tmp/pip-wheel-4xo187i6/strucgap-1.0.7-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-05-30T18:04:55,894   adding 'strucgap/__init__.py'
2025-05-30T18:04:55,925   adding 'strucgap/datavisualization.py'
2025-05-30T18:04:55,936   adding 'strucgap/functionannotation.py'
2025-05-30T18:04:55,943   adding 'strucgap/glycanstructure.py'
2025-05-30T18:04:55,949   adding 'strucgap/glyconetwork.py'
2025-05-30T18:04:55,958   adding 'strucgap/glycopeptidequant.py'
2025-05-30T18:04:55,961   adding 'strucgap/glycosite.py'
2025-05-30T18:04:55,964   adding 'strucgap/insighttracker.py'
2025-05-30T18:04:55,968   adding 'strucgap/preprocess.py'
2025-05-30T18:04:55,971   adding 'strucgap-1.0.7.dist-info/METADATA'
2025-05-30T18:04:55,972   adding 'strucgap-1.0.7.dist-info/WHEEL'
2025-05-30T18:04:55,973   adding 'strucgap-1.0.7.dist-info/top_level.txt'
2025-05-30T18:04:55,973   adding 'strucgap-1.0.7.dist-info/RECORD'
2025-05-30T18:04:55,976   removing build/bdist.linux-armv7l/wheel
2025-05-30T18:04:56,090   Building wheel for strucgap (setup.py): finished with status 'done'
2025-05-30T18:04:56,093   Created wheel for strucgap: filename=strucgap-1.0.7-py3-none-any.whl size=122213 sha256=7f2d24c78bb82f243cc18c6d051a5f989ab490a2b3a154c10a3012c2cd5d18c0
2025-05-30T18:04:56,095   Stored in directory: /tmp/pip-ephem-wheel-cache-c3yons9o/wheels/8f/c2/fa/a6ef05d4e8bcd92cfddc8231b76cd3ad9a0faee38b3aa208fc
2025-05-30T18:04:56,105 Successfully built strucgap
2025-05-30T18:04:56,112 Removed build tracker: '/tmp/pip-build-tracker-d5zm07v_'