2025-05-30T21:41:47,498 Created temporary directory: /tmp/pip-build-tracker-5xhbt__c 2025-05-30T21:41:47,499 Initialized build tracking at /tmp/pip-build-tracker-5xhbt__c 2025-05-30T21:41:47,499 Created build tracker: /tmp/pip-build-tracker-5xhbt__c 2025-05-30T21:41:47,500 Entered build tracker: /tmp/pip-build-tracker-5xhbt__c 2025-05-30T21:41:47,500 Created temporary directory: /tmp/pip-wheel-tnc_t38u 2025-05-30T21:41:47,505 Created temporary directory: /tmp/pip-ephem-wheel-cache-qpxwp14c 2025-05-30T21:41:47,561 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-05-30T21:41:47,564 2 location(s) to search for versions of biobb-gromacs: 2025-05-30T21:41:47,564 * https://pypi.org/simple/biobb-gromacs/ 2025-05-30T21:41:47,564 * https://www.piwheels.org/simple/biobb-gromacs/ 2025-05-30T21:41:47,564 Fetching project page and analyzing links: https://pypi.org/simple/biobb-gromacs/ 2025-05-30T21:41:47,565 Getting page https://pypi.org/simple/biobb-gromacs/ 2025-05-30T21:41:47,567 Found index url https://pypi.org/simple/ 2025-05-30T21:41:47,797 Fetched page https://pypi.org/simple/biobb-gromacs/ as application/vnd.pypi.simple.v1+json 2025-05-30T21:41:47,805 Skipping link: No binaries permitted for biobb-gromacs: https://files.pythonhosted.org/packages/86/a0/f92aeb96c32f5abc4e8642e95ab8248f3105dfde5dd0e89435ae70448607/biobb_gromacs-3.8.0-py3-none-any.whl (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7) 2025-05-30T21:41:47,807 Found link https://files.pythonhosted.org/packages/2a/4b/be17e7b27a96404d0f87426fbabd98dde1c97a7b8a1c54d041066c23ccf4/biobb_gromacs-3.8.0.tar.gz (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7), version: 3.8.0 2025-05-30T21:41:47,808 Skipping link: No binaries permitted for biobb-gromacs: https://files.pythonhosted.org/packages/2e/0e/747bdb6621a1a44e3f02427166092650a9a68398395ca67f2937b15d7f41/biobb_gromacs-3.8.1-py3-none-any.whl (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7) 2025-05-30T21:41:47,809 Found link https://files.pythonhosted.org/packages/ea/60/3112f633e90ddc93f3db9c2f4e9e4e3eb1100e3a09c87afbfc7abda281a8/biobb_gromacs-3.8.1.tar.gz (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7), version: 3.8.1 2025-05-30T21:41:47,810 Skipping link: No binaries permitted for biobb-gromacs: https://files.pythonhosted.org/packages/05/a4/d455ddd59bf78a5737d5d259f73dfd02c519a3e283039a8e017a09f1cfa0/biobb_gromacs-3.9.0-py3-none-any.whl (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7,<3.10) 2025-05-30T21:41:47,813 Link requires a different Python (3.11.2 not in: '>=3.7,<3.10'): https://files.pythonhosted.org/packages/76/19/78c5eac01654d173445bcd5a5ecb97960da2fbf7f017488890aafd1dce89/biobb_gromacs-3.9.0.tar.gz (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7,<3.10) 2025-05-30T21:41:47,815 Skipping link: 3.9.0 Requires-Python >=3.7,<3.10: https://files.pythonhosted.org/packages/76/19/78c5eac01654d173445bcd5a5ecb97960da2fbf7f017488890aafd1dce89/biobb_gromacs-3.9.0.tar.gz (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7,<3.10) 2025-05-30T21:41:47,816 Skipping link: No binaries permitted for biobb-gromacs: https://files.pythonhosted.org/packages/21/48/4004837530aeaa5b0355627b3d5bde2d1ecaec3f03e10c6251df81d26543/biobb_gromacs-4.0.0-py3-none-any.whl (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7,<=3.10) 2025-05-30T21:41:47,818 Link requires a different Python (3.11.2 not in: '>=3.7,<=3.10'): https://files.pythonhosted.org/packages/35/4e/cb24d7828d758e84bc9b4264303238d2372c7daf6081a88efce3e7e0f316/biobb_gromacs-4.0.0.tar.gz (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7,<=3.10) 2025-05-30T21:41:47,819 Skipping link: 4.0.0 Requires-Python >=3.7,<=3.10: https://files.pythonhosted.org/packages/35/4e/cb24d7828d758e84bc9b4264303238d2372c7daf6081a88efce3e7e0f316/biobb_gromacs-4.0.0.tar.gz (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7,<=3.10) 2025-05-30T21:41:47,820 Skipping link: No binaries permitted for biobb-gromacs: https://files.pythonhosted.org/packages/7c/12/2f616a3f4236c15346886c35c7001f657ac2dcf00cd0787d3660abaf91fe/biobb_gromacs-4.1.0-py3-none-any.whl (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.8) 2025-05-30T21:41:47,821 Found link https://files.pythonhosted.org/packages/a1/8e/a64eb1d1994ab01a2c561aa9b4c10aecbcbee823304e8fb9e8dc91ed0d68/biobb_gromacs-4.1.0.tar.gz (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.8), version: 4.1.0 2025-05-30T21:41:47,822 Skipping link: No binaries permitted for biobb-gromacs: https://files.pythonhosted.org/packages/83/29/ba77b856d70014284b072f30499704544fff363802a87e370306e0076e2d/biobb_gromacs-4.1.1-py3-none-any.whl (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.8) 2025-05-30T21:41:47,822 Found link https://files.pythonhosted.org/packages/e0/93/15b79b6f2e563c079e1407285989e8942a0523b53a2234033cb9b60d5324/biobb_gromacs-4.1.1.tar.gz (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.8), version: 4.1.1 2025-05-30T21:41:47,823 Skipping link: No binaries permitted for biobb-gromacs: https://files.pythonhosted.org/packages/92/36/bb026e676c4c3f89143726c5e147df3a93cc51ad64991be78deeb6f5e1ea/biobb_gromacs-4.2.0-py3-none-any.whl (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.8) 2025-05-30T21:41:47,823 Found link https://files.pythonhosted.org/packages/77/64/e76a7729998be35d6332beb40024d7e2a1e4f104ec31cbabafdbf7c0dd7c/biobb_gromacs-4.2.0.tar.gz (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.8), version: 4.2.0 2025-05-30T21:41:47,824 Skipping link: No binaries permitted for biobb-gromacs: https://files.pythonhosted.org/packages/3d/77/54af43bdff43a41844e21972a53a00e29cc6494beff4daf6a232faf4f422/biobb_gromacs-5.0.0-py3-none-any.whl (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.9) 2025-05-30T21:41:47,825 Found link https://files.pythonhosted.org/packages/da/cd/75fa22e6eeb7622bce04a5468bddc39a687a8fb0a0315e716210f390d8a1/biobb_gromacs-5.0.0.tar.gz (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.9), version: 5.0.0 2025-05-30T21:41:47,825 Skipping link: No binaries permitted for biobb-gromacs: https://files.pythonhosted.org/packages/27/ae/18cf98eecaefaf0ad33b170333b0d855733e0722e48ca721941a8eadb525/biobb_gromacs-5.1.0-py3-none-any.whl (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.9) 2025-05-30T21:41:47,826 Found link https://files.pythonhosted.org/packages/76/aa/314fa0f16db514b438450b97bdac627959f5d8e458480849023b06bb7b31/biobb_gromacs-5.1.0.tar.gz (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.9), version: 5.1.0 2025-05-30T21:41:47,827 Skipping link: No binaries permitted for biobb-gromacs: https://files.pythonhosted.org/packages/54/5a/9a9f893a8a031cdbdf327c4c9af1c28058b4bf3cd8fd0cbdb9409b7b63d8/biobb_gromacs-5.1.1-py3-none-any.whl (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.9) 2025-05-30T21:41:47,827 Found link https://files.pythonhosted.org/packages/44/c1/ec968234df3ffb99e4e013c9f6d20635fb9507bed0aaa2a89716e97146ff/biobb_gromacs-5.1.1.tar.gz (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.9), version: 5.1.1 2025-05-30T21:41:47,828 Fetching project page and analyzing links: https://www.piwheels.org/simple/biobb-gromacs/ 2025-05-30T21:41:47,829 Getting page https://www.piwheels.org/simple/biobb-gromacs/ 2025-05-30T21:41:47,830 Found index url https://www.piwheels.org/simple/ 2025-05-30T21:41:47,994 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biobb-gromacs/ 2025-05-30T21:41:48,658 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biobb-gromacs/ 2025-05-30T21:41:49,835 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biobb-gromacs/ 2025-05-30T21:41:52,014 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biobb-gromacs/ 2025-05-30T21:41:56,203 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biobb-gromacs/ 2025-05-30T21:41:56,372 Could not fetch URL https://www.piwheels.org/simple/biobb-gromacs/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/biobb-gromacs/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping 2025-05-30T21:41:56,374 Skipping link: not a file: https://www.piwheels.org/simple/biobb-gromacs/ 2025-05-30T21:41:56,374 Skipping link: not a file: https://pypi.org/simple/biobb-gromacs/ 2025-05-30T21:41:56,398 Given no hashes to check 1 links for project 'biobb-gromacs': discarding no candidates 2025-05-30T21:41:56,400 Collecting biobb-gromacs==5.1.0 2025-05-30T21:41:56,402 Created temporary directory: /tmp/pip-unpack-ps7iphko 2025-05-30T21:41:56,626 Downloading biobb_gromacs-5.1.0.tar.gz (32 kB) 2025-05-30T21:41:56,722 Added biobb-gromacs==5.1.0 from https://files.pythonhosted.org/packages/76/aa/314fa0f16db514b438450b97bdac627959f5d8e458480849023b06bb7b31/biobb_gromacs-5.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-5xhbt__c' 2025-05-30T21:41:56,724 Running setup.py (path:/tmp/pip-wheel-tnc_t38u/biobb-gromacs_5d57e0c689f84a988168b8e5580cb89b/setup.py) egg_info for package biobb-gromacs 2025-05-30T21:41:56,726 Created temporary directory: /tmp/pip-pip-egg-info-o2u89npw 2025-05-30T21:41:56,726 Preparing metadata (setup.py): started 2025-05-30T21:41:56,728 Running command python setup.py egg_info 2025-05-30T21:41:57,608 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-05-30T21:41:57,609 !! 2025-05-30T21:41:57,610 ******************************************************************************** 2025-05-30T21:41:57,611 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-05-30T21:41:57,612 License :: OSI Approved :: Apache Software License 2025-05-30T21:41:57,613 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-05-30T21:41:57,614 ******************************************************************************** 2025-05-30T21:41:57,615 !! 2025-05-30T21:41:57,615 self._finalize_license_expression() 2025-05-30T21:41:57,639 running egg_info 2025-05-30T21:41:57,668 creating /tmp/pip-pip-egg-info-o2u89npw/biobb_gromacs.egg-info 2025-05-30T21:41:57,669 writing /tmp/pip-pip-egg-info-o2u89npw/biobb_gromacs.egg-info/PKG-INFO 2025-05-30T21:41:57,672 writing dependency_links to /tmp/pip-pip-egg-info-o2u89npw/biobb_gromacs.egg-info/dependency_links.txt 2025-05-30T21:41:57,674 writing entry points to /tmp/pip-pip-egg-info-o2u89npw/biobb_gromacs.egg-info/entry_points.txt 2025-05-30T21:41:57,676 writing requirements to /tmp/pip-pip-egg-info-o2u89npw/biobb_gromacs.egg-info/requires.txt 2025-05-30T21:41:57,677 writing top-level names to /tmp/pip-pip-egg-info-o2u89npw/biobb_gromacs.egg-info/top_level.txt 2025-05-30T21:41:57,679 writing manifest file '/tmp/pip-pip-egg-info-o2u89npw/biobb_gromacs.egg-info/SOURCES.txt' 2025-05-30T21:41:57,775 reading manifest file '/tmp/pip-pip-egg-info-o2u89npw/biobb_gromacs.egg-info/SOURCES.txt' 2025-05-30T21:41:57,777 adding license file 'LICENSE' 2025-05-30T21:41:57,780 writing manifest file '/tmp/pip-pip-egg-info-o2u89npw/biobb_gromacs.egg-info/SOURCES.txt' 2025-05-30T21:41:57,884 Preparing metadata (setup.py): finished with status 'done' 2025-05-30T21:41:57,889 Source in /tmp/pip-wheel-tnc_t38u/biobb-gromacs_5d57e0c689f84a988168b8e5580cb89b has version 5.1.0, which satisfies requirement biobb-gromacs==5.1.0 from https://files.pythonhosted.org/packages/76/aa/314fa0f16db514b438450b97bdac627959f5d8e458480849023b06bb7b31/biobb_gromacs-5.1.0.tar.gz 2025-05-30T21:41:57,890 Removed biobb-gromacs==5.1.0 from https://files.pythonhosted.org/packages/76/aa/314fa0f16db514b438450b97bdac627959f5d8e458480849023b06bb7b31/biobb_gromacs-5.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-5xhbt__c' 2025-05-30T21:41:57,896 Created temporary directory: /tmp/pip-unpack-buunr326 2025-05-30T21:41:57,897 Created temporary directory: /tmp/pip-unpack-_wtwll_k 2025-05-30T21:41:57,897 Building wheels for collected packages: biobb-gromacs 2025-05-30T21:41:57,901 Created temporary directory: /tmp/pip-wheel-j42ig_6n 2025-05-30T21:41:57,902 DEPRECATION: Building 'biobb-gromacs' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'biobb-gromacs'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-05-30T21:41:57,903 Building wheel for biobb-gromacs (setup.py): started 2025-05-30T21:41:57,905 Destination directory: /tmp/pip-wheel-j42ig_6n 2025-05-30T21:41:57,905 Running command python setup.py bdist_wheel 2025-05-30T21:41:58,752 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-05-30T21:41:58,752 !! 2025-05-30T21:41:58,753 ******************************************************************************** 2025-05-30T21:41:58,754 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-05-30T21:41:58,755 License :: OSI Approved :: Apache Software License 2025-05-30T21:41:58,756 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-05-30T21:41:58,757 ******************************************************************************** 2025-05-30T21:41:58,758 !! 2025-05-30T21:41:58,759 self._finalize_license_expression() 2025-05-30T21:41:58,760 running bdist_wheel 2025-05-30T21:41:58,894 running build 2025-05-30T21:41:58,895 running build_py 2025-05-30T21:41:58,926 creating build/lib/biobb_gromacs 2025-05-30T21:41:58,928 copying biobb_gromacs/__init__.py -> build/lib/biobb_gromacs 2025-05-30T21:41:58,931 creating build/lib/biobb_gromacs/test 2025-05-30T21:41:58,932 copying biobb_gromacs/test/__init__.py -> build/lib/biobb_gromacs/test 2025-05-30T21:41:58,934 creating build/lib/biobb_gromacs/gromacs 2025-05-30T21:41:58,936 copying biobb_gromacs/gromacs/grompp_mdrun.py -> build/lib/biobb_gromacs/gromacs 2025-05-30T21:41:58,938 copying biobb_gromacs/gromacs/__init__.py -> build/lib/biobb_gromacs/gromacs 2025-05-30T21:41:58,940 copying biobb_gromacs/gromacs/common.py -> build/lib/biobb_gromacs/gromacs 2025-05-30T21:41:58,943 copying biobb_gromacs/gromacs/pdb2gmx.py -> build/lib/biobb_gromacs/gromacs 2025-05-30T21:41:58,945 copying biobb_gromacs/gromacs/make_ndx.py -> build/lib/biobb_gromacs/gromacs 2025-05-30T21:41:58,948 copying biobb_gromacs/gromacs/trjcat.py -> build/lib/biobb_gromacs/gromacs 2025-05-30T21:41:58,950 copying biobb_gromacs/gromacs/genrestr.py -> build/lib/biobb_gromacs/gromacs 2025-05-30T21:41:58,953 copying biobb_gromacs/gromacs/grompp.py -> build/lib/biobb_gromacs/gromacs 2025-05-30T21:41:58,956 copying biobb_gromacs/gromacs/mdrun.py -> build/lib/biobb_gromacs/gromacs 2025-05-30T21:41:58,958 copying biobb_gromacs/gromacs/editconf.py -> build/lib/biobb_gromacs/gromacs 2025-05-30T21:41:58,961 copying biobb_gromacs/gromacs/genion.py -> build/lib/biobb_gromacs/gromacs 2025-05-30T21:41:58,963 copying biobb_gromacs/gromacs/gmxselect.py -> build/lib/biobb_gromacs/gromacs 2025-05-30T21:41:58,966 copying biobb_gromacs/gromacs/solvate.py -> build/lib/biobb_gromacs/gromacs 2025-05-30T21:41:58,969 creating build/lib/biobb_gromacs/gromacs_extra 2025-05-30T21:41:58,970 copying biobb_gromacs/gromacs_extra/__init__.py -> build/lib/biobb_gromacs/gromacs_extra 2025-05-30T21:41:58,972 copying biobb_gromacs/gromacs_extra/ndx2resttop.py -> build/lib/biobb_gromacs/gromacs_extra 2025-05-30T21:41:58,975 copying biobb_gromacs/gromacs_extra/append_ligand.py -> build/lib/biobb_gromacs/gromacs_extra 2025-05-30T21:41:58,980 copying biobb_gromacs/py.typed -> build/lib/biobb_gromacs 2025-05-30T21:41:59,015 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-05-30T21:41:59,016 !! 2025-05-30T21:41:59,017 ******************************************************************************** 2025-05-30T21:41:59,018 Please avoid running ``setup.py`` directly. 2025-05-30T21:41:59,018 Instead, use pypa/build, pypa/installer or other 2025-05-30T21:41:59,019 standards-based tools. 2025-05-30T21:41:59,020 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-05-30T21:41:59,020 or your builds will no longer be supported. 2025-05-30T21:41:59,021 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-05-30T21:41:59,022 ******************************************************************************** 2025-05-30T21:41:59,023 !! 2025-05-30T21:41:59,024 self.initialize_options() 2025-05-30T21:41:59,044 installing to build/bdist.linux-armv7l/wheel 2025-05-30T21:41:59,045 running install 2025-05-30T21:41:59,070 running install_lib 2025-05-30T21:41:59,097 creating build/bdist.linux-armv7l/wheel 2025-05-30T21:41:59,099 creating build/bdist.linux-armv7l/wheel/biobb_gromacs 2025-05-30T21:41:59,101 copying build/lib/biobb_gromacs/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_gromacs 2025-05-30T21:41:59,102 copying build/lib/biobb_gromacs/py.typed -> build/bdist.linux-armv7l/wheel/./biobb_gromacs 2025-05-30T21:41:59,104 creating build/bdist.linux-armv7l/wheel/biobb_gromacs/test 2025-05-30T21:41:59,105 copying build/lib/biobb_gromacs/test/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_gromacs/test 2025-05-30T21:41:59,108 creating build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs 2025-05-30T21:41:59,109 copying build/lib/biobb_gromacs/gromacs/grompp_mdrun.py -> build/bdist.linux-armv7l/wheel/./biobb_gromacs/gromacs 2025-05-30T21:41:59,112 copying build/lib/biobb_gromacs/gromacs/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_gromacs/gromacs 2025-05-30T21:41:59,114 copying build/lib/biobb_gromacs/gromacs/common.py -> build/bdist.linux-armv7l/wheel/./biobb_gromacs/gromacs 2025-05-30T21:41:59,116 copying build/lib/biobb_gromacs/gromacs/pdb2gmx.py -> build/bdist.linux-armv7l/wheel/./biobb_gromacs/gromacs 2025-05-30T21:41:59,119 copying build/lib/biobb_gromacs/gromacs/make_ndx.py -> build/bdist.linux-armv7l/wheel/./biobb_gromacs/gromacs 2025-05-30T21:41:59,121 copying build/lib/biobb_gromacs/gromacs/trjcat.py -> build/bdist.linux-armv7l/wheel/./biobb_gromacs/gromacs 2025-05-30T21:41:59,124 copying build/lib/biobb_gromacs/gromacs/genrestr.py -> build/bdist.linux-armv7l/wheel/./biobb_gromacs/gromacs 2025-05-30T21:41:59,126 copying build/lib/biobb_gromacs/gromacs/grompp.py -> build/bdist.linux-armv7l/wheel/./biobb_gromacs/gromacs 2025-05-30T21:41:59,129 copying build/lib/biobb_gromacs/gromacs/mdrun.py -> build/bdist.linux-armv7l/wheel/./biobb_gromacs/gromacs 2025-05-30T21:41:59,132 copying build/lib/biobb_gromacs/gromacs/editconf.py -> build/bdist.linux-armv7l/wheel/./biobb_gromacs/gromacs 2025-05-30T21:41:59,135 copying build/lib/biobb_gromacs/gromacs/genion.py -> build/bdist.linux-armv7l/wheel/./biobb_gromacs/gromacs 2025-05-30T21:41:59,138 copying build/lib/biobb_gromacs/gromacs/gmxselect.py -> build/bdist.linux-armv7l/wheel/./biobb_gromacs/gromacs 2025-05-30T21:41:59,140 copying build/lib/biobb_gromacs/gromacs/solvate.py -> build/bdist.linux-armv7l/wheel/./biobb_gromacs/gromacs 2025-05-30T21:41:59,143 creating build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs_extra 2025-05-30T21:41:59,145 copying build/lib/biobb_gromacs/gromacs_extra/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_gromacs/gromacs_extra 2025-05-30T21:41:59,147 copying build/lib/biobb_gromacs/gromacs_extra/ndx2resttop.py -> build/bdist.linux-armv7l/wheel/./biobb_gromacs/gromacs_extra 2025-05-30T21:41:59,150 copying build/lib/biobb_gromacs/gromacs_extra/append_ligand.py -> build/bdist.linux-armv7l/wheel/./biobb_gromacs/gromacs_extra 2025-05-30T21:41:59,152 running install_egg_info 2025-05-30T21:41:59,192 running egg_info 2025-05-30T21:41:59,219 writing biobb_gromacs.egg-info/PKG-INFO 2025-05-30T21:41:59,223 writing dependency_links to biobb_gromacs.egg-info/dependency_links.txt 2025-05-30T21:41:59,225 writing entry points to biobb_gromacs.egg-info/entry_points.txt 2025-05-30T21:41:59,226 writing requirements to biobb_gromacs.egg-info/requires.txt 2025-05-30T21:41:59,227 writing top-level names to biobb_gromacs.egg-info/top_level.txt 2025-05-30T21:41:59,262 reading manifest file 'biobb_gromacs.egg-info/SOURCES.txt' 2025-05-30T21:41:59,265 adding license file 'LICENSE' 2025-05-30T21:41:59,269 writing manifest file 'biobb_gromacs.egg-info/SOURCES.txt' 2025-05-30T21:41:59,270 Copying biobb_gromacs.egg-info to build/bdist.linux-armv7l/wheel/./biobb_gromacs-5.1.0-py3.11.egg-info 2025-05-30T21:41:59,281 running install_scripts 2025-05-30T21:41:59,295 creating build/bdist.linux-armv7l/wheel/biobb_gromacs-5.1.0.dist-info/WHEEL 2025-05-30T21:41:59,298 creating '/tmp/pip-wheel-j42ig_6n/biobb_gromacs-5.1.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-05-30T21:41:59,301 adding 'biobb_gromacs/__init__.py' 2025-05-30T21:41:59,302 adding 'biobb_gromacs/py.typed' 2025-05-30T21:41:59,305 adding 'biobb_gromacs/gromacs/__init__.py' 2025-05-30T21:41:59,307 adding 'biobb_gromacs/gromacs/common.py' 2025-05-30T21:41:59,309 adding 'biobb_gromacs/gromacs/editconf.py' 2025-05-30T21:41:59,312 adding 'biobb_gromacs/gromacs/genion.py' 2025-05-30T21:41:59,314 adding 'biobb_gromacs/gromacs/genrestr.py' 2025-05-30T21:41:59,316 adding 'biobb_gromacs/gromacs/gmxselect.py' 2025-05-30T21:41:59,319 adding 'biobb_gromacs/gromacs/grompp.py' 2025-05-30T21:41:59,321 adding 'biobb_gromacs/gromacs/grompp_mdrun.py' 2025-05-30T21:41:59,324 adding 'biobb_gromacs/gromacs/make_ndx.py' 2025-05-30T21:41:59,326 adding 'biobb_gromacs/gromacs/mdrun.py' 2025-05-30T21:41:59,329 adding 'biobb_gromacs/gromacs/pdb2gmx.py' 2025-05-30T21:41:59,331 adding 'biobb_gromacs/gromacs/solvate.py' 2025-05-30T21:41:59,333 adding 'biobb_gromacs/gromacs/trjcat.py' 2025-05-30T21:41:59,334 adding 'biobb_gromacs/gromacs_extra/__init__.py' 2025-05-30T21:41:59,337 adding 'biobb_gromacs/gromacs_extra/append_ligand.py' 2025-05-30T21:41:59,339 adding 'biobb_gromacs/gromacs_extra/ndx2resttop.py' 2025-05-30T21:41:59,340 adding 'biobb_gromacs/test/__init__.py' 2025-05-30T21:41:59,344 adding 'biobb_gromacs-5.1.0.dist-info/licenses/LICENSE' 2025-05-30T21:41:59,346 adding 'biobb_gromacs-5.1.0.dist-info/METADATA' 2025-05-30T21:41:59,347 adding 'biobb_gromacs-5.1.0.dist-info/WHEEL' 2025-05-30T21:41:59,348 adding 'biobb_gromacs-5.1.0.dist-info/entry_points.txt' 2025-05-30T21:41:59,349 adding 'biobb_gromacs-5.1.0.dist-info/top_level.txt' 2025-05-30T21:41:59,350 adding 'biobb_gromacs-5.1.0.dist-info/RECORD' 2025-05-30T21:41:59,352 removing build/bdist.linux-armv7l/wheel 2025-05-30T21:41:59,469 Building wheel for biobb-gromacs (setup.py): finished with status 'done' 2025-05-30T21:41:59,472 Created wheel for biobb-gromacs: filename=biobb_gromacs-5.1.0-py3-none-any.whl size=56701 sha256=2b2ef4c5974296a1ed89f590951484d8d07212fa3d2202f5cb8756f5fe8fc932 2025-05-30T21:41:59,473 Stored in directory: /tmp/pip-ephem-wheel-cache-qpxwp14c/wheels/ac/cb/71/67f80c1b9e0ac43d2aef84a6ccfecf7f242294d18dd658dda1 2025-05-30T21:41:59,485 Successfully built biobb-gromacs 2025-05-30T21:41:59,490 Removed build tracker: '/tmp/pip-build-tracker-5xhbt__c'