2025-05-31T05:23:38,950 Created temporary directory: /tmp/pip-build-tracker-omg1m54l 2025-05-31T05:23:38,951 Initialized build tracking at /tmp/pip-build-tracker-omg1m54l 2025-05-31T05:23:38,952 Created build tracker: /tmp/pip-build-tracker-omg1m54l 2025-05-31T05:23:38,952 Entered build tracker: /tmp/pip-build-tracker-omg1m54l 2025-05-31T05:23:38,953 Created temporary directory: /tmp/pip-wheel-dy711004 2025-05-31T05:23:38,957 Created temporary directory: /tmp/pip-ephem-wheel-cache-d4bcfscd 2025-05-31T05:23:39,005 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-05-31T05:23:39,008 2 location(s) to search for versions of docko: 2025-05-31T05:23:39,008 * https://pypi.org/simple/docko/ 2025-05-31T05:23:39,008 * https://www.piwheels.org/simple/docko/ 2025-05-31T05:23:39,008 Fetching project page and analyzing links: https://pypi.org/simple/docko/ 2025-05-31T05:23:39,009 Getting page https://pypi.org/simple/docko/ 2025-05-31T05:23:39,011 Found index url https://pypi.org/simple/ 2025-05-31T05:23:39,230 Fetched page https://pypi.org/simple/docko/ as application/vnd.pypi.simple.v1+json 2025-05-31T05:23:39,232 Skipping link: No binaries permitted for docko: https://files.pythonhosted.org/packages/c9/f4/c897a523b4087106d6aca91240b60ba1dc1454210a044331835f7a804667/docko-0.1.0-py3-none-any.whl (from https://pypi.org/simple/docko/) (requires-python:==3.10.14) 2025-05-31T05:23:39,233 Link requires a different Python (3.11.2 not in: '==3.10.14'): https://files.pythonhosted.org/packages/b9/cf/1559c8937f859cc9c867ab1785b7f24d17073108790c2c818e4db6df3f7e/docko-0.1.0.tar.gz (from https://pypi.org/simple/docko/) (requires-python:==3.10.14) 2025-05-31T05:23:39,234 Skipping link: 0.1.0 Requires-Python ==3.10.14: https://files.pythonhosted.org/packages/b9/cf/1559c8937f859cc9c867ab1785b7f24d17073108790c2c818e4db6df3f7e/docko-0.1.0.tar.gz (from https://pypi.org/simple/docko/) (requires-python:==3.10.14) 2025-05-31T05:23:39,234 Skipping link: No binaries permitted for docko: https://files.pythonhosted.org/packages/0c/25/5a80bf4478e4cd4bc0d8299d694a7a9439c1bcc2e6f2581632a6d19f7eac/docko-0.1.1-py3-none-any.whl (from https://pypi.org/simple/docko/) (requires-python:>=3.8) 2025-05-31T05:23:39,235 Found link https://files.pythonhosted.org/packages/fb/52/e8a4a98995b1cfdcc90fc3d334dd3af3ffd2aed07412f832e24ebcaaa084/docko-0.1.1.tar.gz (from https://pypi.org/simple/docko/) (requires-python:>=3.8), version: 0.1.1 2025-05-31T05:23:39,236 Skipping link: No binaries permitted for docko: https://files.pythonhosted.org/packages/5f/80/17b9d026838cc49908260e7cad0c48d178ec29e77d228f48088ac43a97f1/docko-0.1.2-py3-none-any.whl (from https://pypi.org/simple/docko/) (requires-python:>=3.8) 2025-05-31T05:23:39,237 Found link https://files.pythonhosted.org/packages/85/cb/3920bbbc04a9aa759ea33c694fd392541f0ddabd40b9b55e1e8dacba191f/docko-0.1.2.tar.gz (from https://pypi.org/simple/docko/) (requires-python:>=3.8), version: 0.1.2 2025-05-31T05:23:39,237 Skipping link: No binaries permitted for docko: https://files.pythonhosted.org/packages/f6/0d/1e0bf7b287b5038b9c11679d92e1a471420b76a37d40a814a8146d3ff786/docko-0.1.3-py3-none-any.whl (from https://pypi.org/simple/docko/) (requires-python:>=3.8) 2025-05-31T05:23:39,238 Found link https://files.pythonhosted.org/packages/c3/aa/f4cda0ee7d9abbf37818298198fc88a2b43197fecd7d08080aeaa0a76822/docko-0.1.3.tar.gz (from https://pypi.org/simple/docko/) (requires-python:>=3.8), version: 0.1.3 2025-05-31T05:23:39,239 Fetching project page and analyzing links: https://www.piwheels.org/simple/docko/ 2025-05-31T05:23:39,240 Getting page https://www.piwheels.org/simple/docko/ 2025-05-31T05:23:39,241 Found index url https://www.piwheels.org/simple/ 2025-05-31T05:23:39,390 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/docko/ 2025-05-31T05:23:40,041 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/docko/ 2025-05-31T05:23:41,195 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/docko/ 2025-05-31T05:23:43,377 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/docko/ 2025-05-31T05:23:47,575 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/docko/ 2025-05-31T05:23:47,784 Could not fetch URL https://www.piwheels.org/simple/docko/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/docko/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping 2025-05-31T05:23:47,786 Skipping link: not a file: https://www.piwheels.org/simple/docko/ 2025-05-31T05:23:47,786 Skipping link: not a file: https://pypi.org/simple/docko/ 2025-05-31T05:23:47,804 Given no hashes to check 1 links for project 'docko': discarding no candidates 2025-05-31T05:23:47,806 Collecting docko==0.1.3 2025-05-31T05:23:47,808 Created temporary directory: /tmp/pip-unpack-pjh2oqrz 2025-05-31T05:23:48,025 Downloading docko-0.1.3.tar.gz (26 kB) 2025-05-31T05:23:48,093 Added docko==0.1.3 from https://files.pythonhosted.org/packages/c3/aa/f4cda0ee7d9abbf37818298198fc88a2b43197fecd7d08080aeaa0a76822/docko-0.1.3.tar.gz to build tracker '/tmp/pip-build-tracker-omg1m54l' 2025-05-31T05:23:48,095 Running setup.py (path:/tmp/pip-wheel-dy711004/docko_0209da25d84f4a63910af1aa944ae27c/setup.py) egg_info for package docko 2025-05-31T05:23:48,096 Created temporary directory: /tmp/pip-pip-egg-info-pywxc150 2025-05-31T05:23:48,096 Preparing metadata (setup.py): started 2025-05-31T05:23:48,098 Running command python setup.py egg_info 2025-05-31T05:23:48,988 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-05-31T05:23:48,988 !! 2025-05-31T05:23:48,989 ******************************************************************************** 2025-05-31T05:23:48,990 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-05-31T05:23:48,991 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2025-05-31T05:23:48,992 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-05-31T05:23:48,993 ******************************************************************************** 2025-05-31T05:23:48,994 !! 2025-05-31T05:23:48,994 self._finalize_license_expression() 2025-05-31T05:23:49,017 running egg_info 2025-05-31T05:23:49,044 creating /tmp/pip-pip-egg-info-pywxc150/docko.egg-info 2025-05-31T05:23:49,046 writing /tmp/pip-pip-egg-info-pywxc150/docko.egg-info/PKG-INFO 2025-05-31T05:23:49,050 writing dependency_links to /tmp/pip-pip-egg-info-pywxc150/docko.egg-info/dependency_links.txt 2025-05-31T05:23:49,052 writing entry points to /tmp/pip-pip-egg-info-pywxc150/docko.egg-info/entry_points.txt 2025-05-31T05:23:49,054 writing requirements to /tmp/pip-pip-egg-info-pywxc150/docko.egg-info/requires.txt 2025-05-31T05:23:49,055 writing top-level names to /tmp/pip-pip-egg-info-pywxc150/docko.egg-info/top_level.txt 2025-05-31T05:23:49,057 writing manifest file '/tmp/pip-pip-egg-info-pywxc150/docko.egg-info/SOURCES.txt' 2025-05-31T05:23:49,143 reading manifest file '/tmp/pip-pip-egg-info-pywxc150/docko.egg-info/SOURCES.txt' 2025-05-31T05:23:49,145 adding license file 'LICENSE' 2025-05-31T05:23:49,148 writing manifest file '/tmp/pip-pip-egg-info-pywxc150/docko.egg-info/SOURCES.txt' 2025-05-31T05:23:49,251 Preparing metadata (setup.py): finished with status 'done' 2025-05-31T05:23:49,257 Source in /tmp/pip-wheel-dy711004/docko_0209da25d84f4a63910af1aa944ae27c has version 0.1.3, which satisfies requirement docko==0.1.3 from https://files.pythonhosted.org/packages/c3/aa/f4cda0ee7d9abbf37818298198fc88a2b43197fecd7d08080aeaa0a76822/docko-0.1.3.tar.gz 2025-05-31T05:23:49,258 Removed docko==0.1.3 from https://files.pythonhosted.org/packages/c3/aa/f4cda0ee7d9abbf37818298198fc88a2b43197fecd7d08080aeaa0a76822/docko-0.1.3.tar.gz from build tracker '/tmp/pip-build-tracker-omg1m54l' 2025-05-31T05:23:49,271 Created temporary directory: /tmp/pip-unpack-zihoc34_ 2025-05-31T05:23:49,272 Created temporary directory: /tmp/pip-unpack-y7r3ub_7 2025-05-31T05:23:49,273 Building wheels for collected packages: docko 2025-05-31T05:23:49,276 Created temporary directory: /tmp/pip-wheel-eaj4dtgu 2025-05-31T05:23:49,277 DEPRECATION: Building 'docko' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'docko'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-05-31T05:23:49,278 Building wheel for docko (setup.py): started 2025-05-31T05:23:49,280 Destination directory: /tmp/pip-wheel-eaj4dtgu 2025-05-31T05:23:49,280 Running command python setup.py bdist_wheel 2025-05-31T05:23:50,099 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-05-31T05:23:50,099 !! 2025-05-31T05:23:50,100 ******************************************************************************** 2025-05-31T05:23:50,101 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-05-31T05:23:50,102 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2025-05-31T05:23:50,104 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-05-31T05:23:50,104 ******************************************************************************** 2025-05-31T05:23:50,106 !! 2025-05-31T05:23:50,106 self._finalize_license_expression() 2025-05-31T05:23:50,107 running bdist_wheel 2025-05-31T05:23:50,234 running build 2025-05-31T05:23:50,235 running build_py 2025-05-31T05:23:50,265 creating build/lib/docko 2025-05-31T05:23:50,267 copying docko/diffdock.py -> build/lib/docko 2025-05-31T05:23:50,269 copying docko/__init__.py -> build/lib/docko 2025-05-31T05:23:50,271 copying docko/docko.py -> build/lib/docko 2025-05-31T05:23:50,273 copying docko/main.py -> build/lib/docko 2025-05-31T05:23:50,275 copying docko/helpers.py -> build/lib/docko 2025-05-31T05:23:50,278 copying docko/chai.py -> build/lib/docko 2025-05-31T05:23:50,280 copying docko/boltz.py -> build/lib/docko 2025-05-31T05:23:50,283 copying docko/vina.py -> build/lib/docko 2025-05-31T05:23:50,285 running egg_info 2025-05-31T05:23:50,312 writing docko.egg-info/PKG-INFO 2025-05-31T05:23:50,317 writing dependency_links to docko.egg-info/dependency_links.txt 2025-05-31T05:23:50,319 writing entry points to docko.egg-info/entry_points.txt 2025-05-31T05:23:50,321 writing requirements to docko.egg-info/requires.txt 2025-05-31T05:23:50,322 writing top-level names to docko.egg-info/top_level.txt 2025-05-31T05:23:50,352 reading manifest file 'docko.egg-info/SOURCES.txt' 2025-05-31T05:23:50,355 adding license file 'LICENSE' 2025-05-31T05:23:50,359 writing manifest file 'docko.egg-info/SOURCES.txt' 2025-05-31T05:23:50,388 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-05-31T05:23:50,388 !! 2025-05-31T05:23:50,389 ******************************************************************************** 2025-05-31T05:23:50,390 Please avoid running ``setup.py`` directly. 2025-05-31T05:23:50,390 Instead, use pypa/build, pypa/installer or other 2025-05-31T05:23:50,391 standards-based tools. 2025-05-31T05:23:50,391 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-05-31T05:23:50,392 or your builds will no longer be supported. 2025-05-31T05:23:50,393 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-05-31T05:23:50,393 ******************************************************************************** 2025-05-31T05:23:50,394 !! 2025-05-31T05:23:50,395 self.initialize_options() 2025-05-31T05:23:50,419 installing to build/bdist.linux-armv7l/wheel 2025-05-31T05:23:50,420 running install 2025-05-31T05:23:50,444 running install_lib 2025-05-31T05:23:50,472 creating build/bdist.linux-armv7l/wheel 2025-05-31T05:23:50,475 creating build/bdist.linux-armv7l/wheel/docko 2025-05-31T05:23:50,476 copying build/lib/docko/diffdock.py -> build/bdist.linux-armv7l/wheel/./docko 2025-05-31T05:23:50,479 copying build/lib/docko/__init__.py -> build/bdist.linux-armv7l/wheel/./docko 2025-05-31T05:23:50,481 copying build/lib/docko/docko.py -> build/bdist.linux-armv7l/wheel/./docko 2025-05-31T05:23:50,483 copying build/lib/docko/main.py -> build/bdist.linux-armv7l/wheel/./docko 2025-05-31T05:23:50,486 copying build/lib/docko/helpers.py -> build/bdist.linux-armv7l/wheel/./docko 2025-05-31T05:23:50,489 copying build/lib/docko/chai.py -> build/bdist.linux-armv7l/wheel/./docko 2025-05-31T05:23:50,491 copying build/lib/docko/boltz.py -> build/bdist.linux-armv7l/wheel/./docko 2025-05-31T05:23:50,494 copying build/lib/docko/vina.py -> build/bdist.linux-armv7l/wheel/./docko 2025-05-31T05:23:50,496 running install_data 2025-05-31T05:23:50,524 creating build/bdist.linux-armv7l/wheel/docko-0.1.3.data/data 2025-05-31T05:23:50,526 copying LICENSE -> build/bdist.linux-armv7l/wheel/docko-0.1.3.data/data/. 2025-05-31T05:23:50,528 running install_egg_info 2025-05-31T05:23:50,563 Copying docko.egg-info to build/bdist.linux-armv7l/wheel/./docko-0.1.3-py3.11.egg-info 2025-05-31T05:23:50,575 running install_scripts 2025-05-31T05:23:50,589 creating build/bdist.linux-armv7l/wheel/docko-0.1.3.dist-info/WHEEL 2025-05-31T05:23:50,592 creating '/tmp/pip-wheel-eaj4dtgu/docko-0.1.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-05-31T05:23:50,595 adding 'docko/__init__.py' 2025-05-31T05:23:50,597 adding 'docko/boltz.py' 2025-05-31T05:23:50,599 adding 'docko/chai.py' 2025-05-31T05:23:50,601 adding 'docko/diffdock.py' 2025-05-31T05:23:50,602 adding 'docko/docko.py' 2025-05-31T05:23:50,605 adding 'docko/helpers.py' 2025-05-31T05:23:50,607 adding 'docko/main.py' 2025-05-31T05:23:50,610 adding 'docko/vina.py' 2025-05-31T05:23:50,612 adding 'docko-0.1.3.data/data/LICENSE' 2025-05-31T05:23:50,615 adding 'docko-0.1.3.dist-info/licenses/LICENSE' 2025-05-31T05:23:50,617 adding 'docko-0.1.3.dist-info/METADATA' 2025-05-31T05:23:50,619 adding 'docko-0.1.3.dist-info/WHEEL' 2025-05-31T05:23:50,620 adding 'docko-0.1.3.dist-info/entry_points.txt' 2025-05-31T05:23:50,621 adding 'docko-0.1.3.dist-info/top_level.txt' 2025-05-31T05:23:50,622 adding 'docko-0.1.3.dist-info/RECORD' 2025-05-31T05:23:50,624 removing build/bdist.linux-armv7l/wheel 2025-05-31T05:23:50,735 Building wheel for docko (setup.py): finished with status 'done' 2025-05-31T05:23:50,738 Created wheel for docko: filename=docko-0.1.3-py3-none-any.whl size=26045 sha256=81c42a32f37d14529ba5e0776e34be3a2fcc1b1a821723af24f96e5edc4f6740 2025-05-31T05:23:50,739 Stored in directory: /tmp/pip-ephem-wheel-cache-d4bcfscd/wheels/0c/da/9f/c67ebc8e5ed188b88ca815cec580f005c6ac64d99335172a45 2025-05-31T05:23:50,753 Successfully built docko 2025-05-31T05:23:50,757 Removed build tracker: '/tmp/pip-build-tracker-omg1m54l'