2025-05-31T10:44:26,046 Created temporary directory: /tmp/pip-build-tracker-8qlenlnf
2025-05-31T10:44:26,047 Initialized build tracking at /tmp/pip-build-tracker-8qlenlnf
2025-05-31T10:44:26,047 Created build tracker: /tmp/pip-build-tracker-8qlenlnf
2025-05-31T10:44:26,048 Entered build tracker: /tmp/pip-build-tracker-8qlenlnf
2025-05-31T10:44:26,049 Created temporary directory: /tmp/pip-wheel-uckh5xx_
2025-05-31T10:44:26,053 Created temporary directory: /tmp/pip-ephem-wheel-cache-erthbrl5
2025-05-31T10:44:26,099 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-05-31T10:44:26,101 2 location(s) to search for versions of strucgap:
2025-05-31T10:44:26,101 * https://pypi.org/simple/strucgap/
2025-05-31T10:44:26,101 * https://www.piwheels.org/simple/strucgap/
2025-05-31T10:44:26,102 Fetching project page and analyzing links: https://pypi.org/simple/strucgap/
2025-05-31T10:44:26,102 Getting page https://pypi.org/simple/strucgap/
2025-05-31T10:44:26,104 Found index url https://pypi.org/simple/
2025-05-31T10:44:26,251 Fetched page https://pypi.org/simple/strucgap/ as application/vnd.pypi.simple.v1+json
2025-05-31T10:44:26,254   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/d4/cf/908ee965464dceab500051b070d301fc648f14f165918a250643f754312c/strucgap-1.0.1-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-05-31T10:44:26,255   Found link https://files.pythonhosted.org/packages/e4/ed/c84c67d5cb18aa5d6c871bc5abb254e198230535214a7cf8f003ecf813ae/strucgap-1.0.1.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.1
2025-05-31T10:44:26,255   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/e6/0a/417b6b5e0043e5a5e92598e60b289e11bbf3a1921db8a06967ac26c821ab/strucgap-1.0.2-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-05-31T10:44:26,256   Found link https://files.pythonhosted.org/packages/80/b5/c0a8aca19ac9b3b37852926dab5aef22813bfb7db17e022907b7513751cd/strucgap-1.0.2.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.2
2025-05-31T10:44:26,257   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/6c/8a/8046fc9d7585c40b76f94bcc0f51462b26b460ef72eaba283adc359b1414/strucgap-1.0.3-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-05-31T10:44:26,258   Found link https://files.pythonhosted.org/packages/36/64/97df6dbf736d30b1ed5a0f11b09513d266c5451783575b47fadd5ba720f7/strucgap-1.0.3.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.3
2025-05-31T10:44:26,258   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/4c/cf/29374aca5d9a6e4dcb92da71d7c737883fea9dc0c784add2f46b047bcdb3/strucgap-1.0.4-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-05-31T10:44:26,259   Found link https://files.pythonhosted.org/packages/f7/a4/54678a7f65da22ad9bf8c1fbc22ff415a1c4c59b190aa2cc0ab02bc71a27/strucgap-1.0.4.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.4
2025-05-31T10:44:26,260   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/3e/0a/acfe362babd9946aee23c5c9b973b22704fdd4625b21d3aefc3158469a8f/strucgap-1.0.5-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-05-31T10:44:26,260   Found link https://files.pythonhosted.org/packages/31/14/c9640736615f7b3cd7300f1146d0f6c3c707a24e604b663635e89fb72f74/strucgap-1.0.5.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.5
2025-05-31T10:44:26,261   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/19/2b/a229156141e4f96b442c92afa912d9dc7ff7ca93d4fd40498b412eb2e492/strucgap-1.0.6-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-05-31T10:44:26,262   Found link https://files.pythonhosted.org/packages/47/e1/49002ee8fee4ea83a29298aeadb5da1cad51e30702a716412b435796e909/strucgap-1.0.6.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.6
2025-05-31T10:44:26,262   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/f5/96/a6e1a5e8ddaa8319d34850b3a6ee7abc4cb4a45cab48147b26c76a355af2/strucgap-1.0.7-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-05-31T10:44:26,264   Found link https://files.pythonhosted.org/packages/61/54/ca1a7a265a6b1ab75b75bd1d707aa4d66a91f69dd4491dbcd23a5b1d96bc/strucgap-1.0.7.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.7
2025-05-31T10:44:26,264   Skipping link: No binaries permitted for strucgap: https://files.pythonhosted.org/packages/a5/9d/28f80481e570ce67b245dc87afdefa13a5a3200a6f53baccfdd8d7683250/strucgap-1.0.8-py3-none-any.whl (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7)
2025-05-31T10:44:26,265   Found link https://files.pythonhosted.org/packages/f3/20/5427f3d9632c77f35f2d3d0565ebdf4c63366100b5c96fa50ebdfcc6a8a2/strucgap-1.0.8.tar.gz (from https://pypi.org/simple/strucgap/) (requires-python:>=3.7), version: 1.0.8
2025-05-31T10:44:26,265 Fetching project page and analyzing links: https://www.piwheels.org/simple/strucgap/
2025-05-31T10:44:26,266 Getting page https://www.piwheels.org/simple/strucgap/
2025-05-31T10:44:26,267 Found index url https://www.piwheels.org/simple/
2025-05-31T10:44:26,417 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/strucgap/
2025-05-31T10:44:27,073 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/strucgap/
2025-05-31T10:44:28,256 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/strucgap/
2025-05-31T10:44:30,471 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/strucgap/
2025-05-31T10:44:34,686 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/strucgap/
2025-05-31T10:44:34,909 Could not fetch URL https://www.piwheels.org/simple/strucgap/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/strucgap/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping
2025-05-31T10:44:34,911 Skipping link: not a file: https://www.piwheels.org/simple/strucgap/
2025-05-31T10:44:34,912 Skipping link: not a file: https://pypi.org/simple/strucgap/
2025-05-31T10:44:34,930 Given no hashes to check 1 links for project 'strucgap': discarding no candidates
2025-05-31T10:44:34,932 Collecting strucgap==1.0.8
2025-05-31T10:44:34,934   Created temporary directory: /tmp/pip-unpack-k7dx78gk
2025-05-31T10:44:35,155   Downloading strucgap-1.0.8.tar.gz (115 kB)
2025-05-31T10:44:35,282   Added strucgap==1.0.8 from https://files.pythonhosted.org/packages/f3/20/5427f3d9632c77f35f2d3d0565ebdf4c63366100b5c96fa50ebdfcc6a8a2/strucgap-1.0.8.tar.gz to build tracker '/tmp/pip-build-tracker-8qlenlnf'
2025-05-31T10:44:35,284   Running setup.py (path:/tmp/pip-wheel-uckh5xx_/strucgap_2a7dd2254d2f4a018ccc2bb64c8b6bfc/setup.py) egg_info for package strucgap
2025-05-31T10:44:35,285   Created temporary directory: /tmp/pip-pip-egg-info-bx04bvkv
2025-05-31T10:44:35,286   Preparing metadata (setup.py): started
2025-05-31T10:44:35,287   Running command python setup.py egg_info
2025-05-31T10:44:36,136   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-05-31T10:44:36,136   !!

2025-05-31T10:44:36,137           ********************************************************************************
2025-05-31T10:44:36,138           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-05-31T10:44:36,139           License :: OSI Approved :: MIT License

2025-05-31T10:44:36,140           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-05-31T10:44:36,140           ********************************************************************************

2025-05-31T10:44:36,141   !!
2025-05-31T10:44:36,142     self._finalize_license_expression()
2025-05-31T10:44:36,165   running egg_info
2025-05-31T10:44:36,192   creating /tmp/pip-pip-egg-info-bx04bvkv/strucgap.egg-info
2025-05-31T10:44:36,193   writing /tmp/pip-pip-egg-info-bx04bvkv/strucgap.egg-info/PKG-INFO
2025-05-31T10:44:36,196   writing dependency_links to /tmp/pip-pip-egg-info-bx04bvkv/strucgap.egg-info/dependency_links.txt
2025-05-31T10:44:36,198   writing requirements to /tmp/pip-pip-egg-info-bx04bvkv/strucgap.egg-info/requires.txt
2025-05-31T10:44:36,199   writing top-level names to /tmp/pip-pip-egg-info-bx04bvkv/strucgap.egg-info/top_level.txt
2025-05-31T10:44:36,201   writing manifest file '/tmp/pip-pip-egg-info-bx04bvkv/strucgap.egg-info/SOURCES.txt'
2025-05-31T10:44:36,284   reading manifest file '/tmp/pip-pip-egg-info-bx04bvkv/strucgap.egg-info/SOURCES.txt'
2025-05-31T10:44:36,288   writing manifest file '/tmp/pip-pip-egg-info-bx04bvkv/strucgap.egg-info/SOURCES.txt'
2025-05-31T10:44:36,392   Preparing metadata (setup.py): finished with status 'done'
2025-05-31T10:44:36,397   Source in /tmp/pip-wheel-uckh5xx_/strucgap_2a7dd2254d2f4a018ccc2bb64c8b6bfc has version 1.0.8, which satisfies requirement strucgap==1.0.8 from https://files.pythonhosted.org/packages/f3/20/5427f3d9632c77f35f2d3d0565ebdf4c63366100b5c96fa50ebdfcc6a8a2/strucgap-1.0.8.tar.gz
2025-05-31T10:44:36,398   Removed strucgap==1.0.8 from https://files.pythonhosted.org/packages/f3/20/5427f3d9632c77f35f2d3d0565ebdf4c63366100b5c96fa50ebdfcc6a8a2/strucgap-1.0.8.tar.gz from build tracker '/tmp/pip-build-tracker-8qlenlnf'
2025-05-31T10:44:36,408 Created temporary directory: /tmp/pip-unpack-isbalzuj
2025-05-31T10:44:36,409 Created temporary directory: /tmp/pip-unpack-3dr3_k31
2025-05-31T10:44:36,409 Building wheels for collected packages: strucgap
2025-05-31T10:44:36,414   Created temporary directory: /tmp/pip-wheel-m1vpbwd7
2025-05-31T10:44:36,414   DEPRECATION: Building 'strucgap' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'strucgap'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-05-31T10:44:36,416   Building wheel for strucgap (setup.py): started
2025-05-31T10:44:36,417   Destination directory: /tmp/pip-wheel-m1vpbwd7
2025-05-31T10:44:36,418   Running command python setup.py bdist_wheel
2025-05-31T10:44:37,237   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-05-31T10:44:37,237   !!

2025-05-31T10:44:37,238           ********************************************************************************
2025-05-31T10:44:37,239           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-05-31T10:44:37,240           License :: OSI Approved :: MIT License

2025-05-31T10:44:37,241           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-05-31T10:44:37,242           ********************************************************************************

2025-05-31T10:44:37,243   !!
2025-05-31T10:44:37,243     self._finalize_license_expression()
2025-05-31T10:44:37,244   running bdist_wheel
2025-05-31T10:44:37,371   running build
2025-05-31T10:44:37,371   running build_py
2025-05-31T10:44:37,401   creating build/lib/strucgap
2025-05-31T10:44:37,403   copying strucgap/functionannotation.py -> build/lib/strucgap
2025-05-31T10:44:37,408   copying strucgap/insighttracker.py -> build/lib/strucgap
2025-05-31T10:44:37,410   copying strucgap/__init__.py -> build/lib/strucgap
2025-05-31T10:44:37,412   copying strucgap/preprocess.py -> build/lib/strucgap
2025-05-31T10:44:37,416   copying strucgap/glycosite.py -> build/lib/strucgap
2025-05-31T10:44:37,419   copying strucgap/glycopeptidequant.py -> build/lib/strucgap
2025-05-31T10:44:37,422   copying strucgap/glycanstructure.py -> build/lib/strucgap
2025-05-31T10:44:37,427   copying strucgap/glyconetwork.py -> build/lib/strucgap
2025-05-31T10:44:37,430   copying strucgap/datavisualization.py -> build/lib/strucgap
2025-05-31T10:44:37,466   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-05-31T10:44:37,466   !!

2025-05-31T10:44:37,467           ********************************************************************************
2025-05-31T10:44:37,468           Please avoid running ``setup.py`` directly.
2025-05-31T10:44:37,469           Instead, use pypa/build, pypa/installer or other
2025-05-31T10:44:37,469           standards-based tools.

2025-05-31T10:44:37,470           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-05-31T10:44:37,471           or your builds will no longer be supported.

2025-05-31T10:44:37,472           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-05-31T10:44:37,472           ********************************************************************************

2025-05-31T10:44:37,473   !!
2025-05-31T10:44:37,474     self.initialize_options()
2025-05-31T10:44:37,494   installing to build/bdist.linux-armv7l/wheel
2025-05-31T10:44:37,495   running install
2025-05-31T10:44:37,518   running install_lib
2025-05-31T10:44:37,545   creating build/bdist.linux-armv7l/wheel
2025-05-31T10:44:37,547   creating build/bdist.linux-armv7l/wheel/strucgap
2025-05-31T10:44:37,548   copying build/lib/strucgap/functionannotation.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-05-31T10:44:37,553   copying build/lib/strucgap/insighttracker.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-05-31T10:44:37,556   copying build/lib/strucgap/__init__.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-05-31T10:44:37,558   copying build/lib/strucgap/preprocess.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-05-31T10:44:37,561   copying build/lib/strucgap/glycosite.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-05-31T10:44:37,564   copying build/lib/strucgap/glycopeptidequant.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-05-31T10:44:37,568   copying build/lib/strucgap/glycanstructure.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-05-31T10:44:37,572   copying build/lib/strucgap/glyconetwork.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-05-31T10:44:37,575   copying build/lib/strucgap/datavisualization.py -> build/bdist.linux-armv7l/wheel/./strucgap
2025-05-31T10:44:37,582   running install_egg_info
2025-05-31T10:44:37,615   running egg_info
2025-05-31T10:44:37,643   writing strucgap.egg-info/PKG-INFO
2025-05-31T10:44:37,647   writing dependency_links to strucgap.egg-info/dependency_links.txt
2025-05-31T10:44:37,650   writing requirements to strucgap.egg-info/requires.txt
2025-05-31T10:44:37,651   writing top-level names to strucgap.egg-info/top_level.txt
2025-05-31T10:44:37,680   reading manifest file 'strucgap.egg-info/SOURCES.txt'
2025-05-31T10:44:37,686   writing manifest file 'strucgap.egg-info/SOURCES.txt'
2025-05-31T10:44:37,687   Copying strucgap.egg-info to build/bdist.linux-armv7l/wheel/./strucgap-1.0.8-py3.11.egg-info
2025-05-31T10:44:37,697   running install_scripts
2025-05-31T10:44:37,706   creating build/bdist.linux-armv7l/wheel/strucgap-1.0.8.dist-info/WHEEL
2025-05-31T10:44:37,709   creating '/tmp/pip-wheel-m1vpbwd7/strucgap-1.0.8-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-05-31T10:44:37,712   adding 'strucgap/__init__.py'
2025-05-31T10:44:37,738   adding 'strucgap/datavisualization.py'
2025-05-31T10:44:37,748   adding 'strucgap/functionannotation.py'
2025-05-31T10:44:37,755   adding 'strucgap/glycanstructure.py'
2025-05-31T10:44:37,763   adding 'strucgap/glyconetwork.py'
2025-05-31T10:44:37,771   adding 'strucgap/glycopeptidequant.py'
2025-05-31T10:44:37,775   adding 'strucgap/glycosite.py'
2025-05-31T10:44:37,778   adding 'strucgap/insighttracker.py'
2025-05-31T10:44:37,783   adding 'strucgap/preprocess.py'
2025-05-31T10:44:37,785   adding 'strucgap-1.0.8.dist-info/METADATA'
2025-05-31T10:44:37,787   adding 'strucgap-1.0.8.dist-info/WHEEL'
2025-05-31T10:44:37,788   adding 'strucgap-1.0.8.dist-info/top_level.txt'
2025-05-31T10:44:37,789   adding 'strucgap-1.0.8.dist-info/RECORD'
2025-05-31T10:44:37,792   removing build/bdist.linux-armv7l/wheel
2025-05-31T10:44:37,902   Building wheel for strucgap (setup.py): finished with status 'done'
2025-05-31T10:44:37,906   Created wheel for strucgap: filename=strucgap-1.0.8-py3-none-any.whl size=122215 sha256=9150bc44d5981d2084770a86eb5e980e79e9036478c2a0671c7744416d8c30cd
2025-05-31T10:44:37,907   Stored in directory: /tmp/pip-ephem-wheel-cache-erthbrl5/wheels/94/92/85/333a9c24720defdecefd3c4aeb2c829f834d1054b2e5bf86aa
2025-05-31T10:44:37,918 Successfully built strucgap
2025-05-31T10:44:37,924 Removed build tracker: '/tmp/pip-build-tracker-8qlenlnf'