2025-05-31T21:45:32,762 Created temporary directory: /tmp/pip-build-tracker-e4uluf8k 2025-05-31T21:45:32,763 Initialized build tracking at /tmp/pip-build-tracker-e4uluf8k 2025-05-31T21:45:32,764 Created build tracker: /tmp/pip-build-tracker-e4uluf8k 2025-05-31T21:45:32,764 Entered build tracker: /tmp/pip-build-tracker-e4uluf8k 2025-05-31T21:45:32,765 Created temporary directory: /tmp/pip-wheel-mqidzf8n 2025-05-31T21:45:32,769 Created temporary directory: /tmp/pip-ephem-wheel-cache-bmnu56pv 2025-05-31T21:45:32,816 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-05-31T21:45:32,818 2 location(s) to search for versions of kssdutils: 2025-05-31T21:45:32,818 * https://pypi.org/simple/kssdutils/ 2025-05-31T21:45:32,818 * https://www.piwheels.org/simple/kssdutils/ 2025-05-31T21:45:32,819 Fetching project page and analyzing links: https://pypi.org/simple/kssdutils/ 2025-05-31T21:45:32,820 Getting page https://pypi.org/simple/kssdutils/ 2025-05-31T21:45:32,821 Found index url https://pypi.org/simple/ 2025-05-31T21:45:33,101 Fetched page https://pypi.org/simple/kssdutils/ as application/vnd.pypi.simple.v1+json 2025-05-31T21:45:33,103 Found link https://files.pythonhosted.org/packages/61/ef/1bdb91b53dbe31ea0be28ab2c2292994b6228b357a8d54b69ac642f81f01/kssdutils-1.0.0.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.0 2025-05-31T21:45:33,104 Found link https://files.pythonhosted.org/packages/6f/f6/cc67acf92ea770b5f6a8bd97d375432881861935beafe9ebd4031a73482c/kssdutils-1.0.1.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.1 2025-05-31T21:45:33,105 Found link https://files.pythonhosted.org/packages/57/17/dd41697db7220423d0ab77f9f035b9a347edc1edefc2c35d9890178cbe17/kssdutils-1.0.2.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.2 2025-05-31T21:45:33,105 Found link https://files.pythonhosted.org/packages/3e/92/7a94130bd54e0e3dd20c1a609aef2f24875b86e9d61752f63b500d3f86f5/kssdutils-1.0.3.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.3 2025-05-31T21:45:33,106 Found link https://files.pythonhosted.org/packages/42/01/15ec102f7ac6b4fc3158ba60de64598a005cefffc773fa69eecbd3c9b016/kssdutils-1.0.5.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.5 2025-05-31T21:45:33,107 Found link https://files.pythonhosted.org/packages/aa/08/08fa5f76478fd3dbe9534ad21332b5dc03826197935c2b696e189af49f0b/kssdutils-1.0.6.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.6 2025-05-31T21:45:33,107 Found link https://files.pythonhosted.org/packages/78/17/7776b7c3b149fedfb0fba98bce07fdf08cb53773dafa174f7fda9ce4df55/kssdutils-1.0.7.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.7 2025-05-31T21:45:33,108 Found link https://files.pythonhosted.org/packages/a7/50/138f2b5f98dcd2327609362e505af19857468da67dba88eaf6c8d8fdb83a/kssdutils-1.1.0.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.0 2025-05-31T21:45:33,109 Found link https://files.pythonhosted.org/packages/be/be/659d775f3dd37e727d782fa46b7b665e69a59c78312fa5fc1bad8640f980/kssdutils-1.1.2.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.2 2025-05-31T21:45:33,110 Found link https://files.pythonhosted.org/packages/d0/e9/badb25888a9e48aa82e2389e848aff81ae6affd17af96622974dc314ae52/kssdutils-1.1.3.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.3 2025-05-31T21:45:33,111 Found link https://files.pythonhosted.org/packages/b3/43/18e812a7529c356cfa20627f201f1956e4b8203e1db782861ad6e5900bf8/kssdutils-1.1.4.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.4 2025-05-31T21:45:33,111 Found link https://files.pythonhosted.org/packages/98/8c/0eb4850f10a9da51072d7be474ecffd0f808423f21838f543dc88db7ddd2/kssdutils-1.1.5.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.5 2025-05-31T21:45:33,112 Fetching project page and analyzing links: https://www.piwheels.org/simple/kssdutils/ 2025-05-31T21:45:33,113 Getting page https://www.piwheels.org/simple/kssdutils/ 2025-05-31T21:45:33,114 Found index url https://www.piwheels.org/simple/ 2025-05-31T21:45:33,269 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/kssdutils/ 2025-05-31T21:45:33,920 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/kssdutils/ 2025-05-31T21:45:35,068 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/kssdutils/ 2025-05-31T21:45:37,282 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/kssdutils/ 2025-05-31T21:45:41,497 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/kssdutils/ 2025-05-31T21:45:41,687 Could not fetch URL https://www.piwheels.org/simple/kssdutils/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/kssdutils/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping 2025-05-31T21:45:41,688 Skipping link: not a file: https://www.piwheels.org/simple/kssdutils/ 2025-05-31T21:45:41,689 Skipping link: not a file: https://pypi.org/simple/kssdutils/ 2025-05-31T21:45:41,707 Given no hashes to check 1 links for project 'kssdutils': discarding no candidates 2025-05-31T21:45:41,709 Collecting kssdutils==1.1.2 2025-05-31T21:45:41,712 Created temporary directory: /tmp/pip-unpack-lse82g0j 2025-05-31T21:45:41,928 Downloading kssdutils-1.1.2.tar.gz (47 kB) 2025-05-31T21:45:42,041 Added kssdutils==1.1.2 from https://files.pythonhosted.org/packages/be/be/659d775f3dd37e727d782fa46b7b665e69a59c78312fa5fc1bad8640f980/kssdutils-1.1.2.tar.gz to build tracker '/tmp/pip-build-tracker-e4uluf8k' 2025-05-31T21:45:42,043 Running setup.py (path:/tmp/pip-wheel-mqidzf8n/kssdutils_acc314ccc19b4878a4358362eadd4536/setup.py) egg_info for package kssdutils 2025-05-31T21:45:42,044 Created temporary directory: /tmp/pip-pip-egg-info-7ovzb5yb 2025-05-31T21:45:42,045 Preparing metadata (setup.py): started 2025-05-31T21:45:42,046 Running command python setup.py egg_info 2025-05-31T21:45:42,931 running egg_info 2025-05-31T21:45:42,957 creating /tmp/pip-pip-egg-info-7ovzb5yb/kssdutils.egg-info 2025-05-31T21:45:42,958 writing /tmp/pip-pip-egg-info-7ovzb5yb/kssdutils.egg-info/PKG-INFO 2025-05-31T21:45:42,962 writing dependency_links to /tmp/pip-pip-egg-info-7ovzb5yb/kssdutils.egg-info/dependency_links.txt 2025-05-31T21:45:42,963 writing requirements to /tmp/pip-pip-egg-info-7ovzb5yb/kssdutils.egg-info/requires.txt 2025-05-31T21:45:42,965 writing top-level names to /tmp/pip-pip-egg-info-7ovzb5yb/kssdutils.egg-info/top_level.txt 2025-05-31T21:45:42,966 writing manifest file '/tmp/pip-pip-egg-info-7ovzb5yb/kssdutils.egg-info/SOURCES.txt' 2025-05-31T21:45:43,071 reading manifest file '/tmp/pip-pip-egg-info-7ovzb5yb/kssdutils.egg-info/SOURCES.txt' 2025-05-31T21:45:43,073 reading manifest template 'MANIFEST.in' 2025-05-31T21:45:43,081 writing manifest file '/tmp/pip-pip-egg-info-7ovzb5yb/kssdutils.egg-info/SOURCES.txt' 2025-05-31T21:45:43,184 Preparing metadata (setup.py): finished with status 'done' 2025-05-31T21:45:43,188 Source in /tmp/pip-wheel-mqidzf8n/kssdutils_acc314ccc19b4878a4358362eadd4536 has version 1.1.2, which satisfies requirement kssdutils==1.1.2 from https://files.pythonhosted.org/packages/be/be/659d775f3dd37e727d782fa46b7b665e69a59c78312fa5fc1bad8640f980/kssdutils-1.1.2.tar.gz 2025-05-31T21:45:43,189 Removed kssdutils==1.1.2 from https://files.pythonhosted.org/packages/be/be/659d775f3dd37e727d782fa46b7b665e69a59c78312fa5fc1bad8640f980/kssdutils-1.1.2.tar.gz from build tracker '/tmp/pip-build-tracker-e4uluf8k' 2025-05-31T21:45:43,194 Created temporary directory: /tmp/pip-unpack-z8t1mcel 2025-05-31T21:45:43,195 Created temporary directory: /tmp/pip-unpack-etqwv7__ 2025-05-31T21:45:43,196 Building wheels for collected packages: kssdutils 2025-05-31T21:45:43,201 Created temporary directory: /tmp/pip-wheel-5kt2hsp4 2025-05-31T21:45:43,201 DEPRECATION: Building 'kssdutils' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'kssdutils'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-05-31T21:45:43,203 Building wheel for kssdutils (setup.py): started 2025-05-31T21:45:43,204 Destination directory: /tmp/pip-wheel-5kt2hsp4 2025-05-31T21:45:43,204 Running command python setup.py bdist_wheel 2025-05-31T21:45:44,012 running bdist_wheel 2025-05-31T21:45:44,143 running build 2025-05-31T21:45:44,144 running build_py 2025-05-31T21:45:44,173 creating build/lib.linux-armv7l-cpython-311 2025-05-31T21:45:44,174 copying kssdutils.py -> build/lib.linux-armv7l-cpython-311 2025-05-31T21:45:44,177 running egg_info 2025-05-31T21:45:44,203 writing kssdutils.egg-info/PKG-INFO 2025-05-31T21:45:44,206 writing dependency_links to kssdutils.egg-info/dependency_links.txt 2025-05-31T21:45:44,208 writing requirements to kssdutils.egg-info/requires.txt 2025-05-31T21:45:44,209 writing top-level names to kssdutils.egg-info/top_level.txt 2025-05-31T21:45:44,240 reading manifest file 'kssdutils.egg-info/SOURCES.txt' 2025-05-31T21:45:44,243 reading manifest template 'MANIFEST.in' 2025-05-31T21:45:44,251 writing manifest file 'kssdutils.egg-info/SOURCES.txt' 2025-05-31T21:45:44,252 running build_ext 2025-05-31T21:45:44,671 building 'kssdtool' extension 2025-05-31T21:45:44,672 creating build/temp.linux-armv7l-cpython-311 2025-05-31T21:45:44,674 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c co2mco.c -o build/temp.linux-armv7l-cpython-311/co2mco.o -fopenmp 2025-05-31T21:45:44,853 co2mco.c: In function ‘cdb_kmerf2kmerdb’: 2025-05-31T21:45:44,854 co2mco.c:109:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-05-31T21:45:44,854 109 | for (unsigned int i = 0; i < comp_num; i++) { 2025-05-31T21:45:44,855 | ^ 2025-05-31T21:45:44,857 co2mco.c: In function ‘co2unitllmco’: 2025-05-31T21:45:44,858 co2mco.c:191:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-05-31T21:45:44,859 191 | for (unsigned int i = 0; i < bin_sz; i++) { 2025-05-31T21:45:44,859 | ^ 2025-05-31T21:45:45,560 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c command_composite.c -o build/temp.linux-armv7l-cpython-311/command_composite.o -fopenmp 2025-05-31T21:45:45,954 command_composite.c: In function ‘get_species_abundance’: 2025-05-31T21:45:45,955 command_composite.c:32:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2025-05-31T21:45:45,956 32 | if (ref_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, ref_dstat_fpath); 2025-05-31T21:45:45,957 | ^~ 2025-05-31T21:45:45,958 command_composite.c:34:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2025-05-31T21:45:45,958 34 | if (qry_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, qry_dstat_fpath); 2025-05-31T21:45:45,959 | ^~ 2025-05-31T21:45:45,960 command_composite.c:64:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T21:45:45,960 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2025-05-31T21:45:45,961 | ^ 2025-05-31T21:45:45,962 command_composite.c:64:31: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T21:45:45,962 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2025-05-31T21:45:45,963 | ^~~~~~~~~~ 2025-05-31T21:45:45,964 command_composite.c:64:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-05-31T21:45:45,965 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2025-05-31T21:45:45,965 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:45,966 command_composite.c:70:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T21:45:45,967 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2025-05-31T21:45:45,968 | ^ 2025-05-31T21:45:45,969 command_composite.c:70:31: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T21:45:45,970 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2025-05-31T21:45:45,970 | ^~~~~~~~~~ 2025-05-31T21:45:45,971 command_composite.c:70:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-05-31T21:45:45,972 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2025-05-31T21:45:45,973 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:45,974 command_composite.c:76:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T21:45:45,975 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2025-05-31T21:45:45,976 | ^ 2025-05-31T21:45:45,976 command_composite.c:76:31: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T21:45:45,977 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2025-05-31T21:45:45,978 | ^~~~~~~~~~ 2025-05-31T21:45:45,979 command_composite.c:76:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-05-31T21:45:45,980 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2025-05-31T21:45:45,981 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:45,982 command_composite.c:82:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T21:45:45,982 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2025-05-31T21:45:45,983 | ^ 2025-05-31T21:45:45,984 command_composite.c:82:31: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T21:45:45,985 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2025-05-31T21:45:45,986 | ^~~~~~~~~~ 2025-05-31T21:45:45,986 command_composite.c:82:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-05-31T21:45:45,987 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2025-05-31T21:45:45,988 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:45,988 command_composite.c:88:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T21:45:45,989 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2025-05-31T21:45:45,990 | ^ 2025-05-31T21:45:45,990 command_composite.c:88:31: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T21:45:45,991 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2025-05-31T21:45:45,992 | ^~~~~~~~~~~~ 2025-05-31T21:45:45,992 command_composite.c:88:13: note: ‘sprintf’ output 6 or more bytes (assuming 271) into a destination of size 256 2025-05-31T21:45:45,993 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2025-05-31T21:45:45,994 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:46,230 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c command_dist.c -o build/temp.linux-armv7l-cpython-311/command_dist.o -fopenmp 2025-05-31T21:45:46,479 command_dist.c: In function ‘mco_cbd_co_dist’: 2025-05-31T21:45:46,481 command_dist.c:677:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-05-31T21:45:46,481 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-05-31T21:45:46,482 | ~~^ 2025-05-31T21:45:46,482 | | 2025-05-31T21:45:46,483 | long unsigned int 2025-05-31T21:45:46,483 | %u 2025-05-31T21:45:46,484 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-05-31T21:45:46,485 | ~~~~~~~ 2025-05-31T21:45:46,485 | | 2025-05-31T21:45:46,486 | size_t {aka unsigned int} 2025-05-31T21:45:46,487 command_dist.c:677:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-05-31T21:45:46,487 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-05-31T21:45:46,488 | ~~^ 2025-05-31T21:45:46,489 | | 2025-05-31T21:45:46,489 | long unsigned int 2025-05-31T21:45:46,490 | %u 2025-05-31T21:45:46,491 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-05-31T21:45:46,492 679 | maplength, (size_t) b * unitsz_distf_mapped); 2025-05-31T21:45:46,492 | ~~~~~~~~~ 2025-05-31T21:45:46,493 | | 2025-05-31T21:45:46,494 | size_t {aka unsigned int} 2025-05-31T21:45:46,494 command_dist.c:677:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-05-31T21:45:46,495 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-05-31T21:45:46,496 | ~~^ 2025-05-31T21:45:46,496 | | 2025-05-31T21:45:46,497 | long unsigned int 2025-05-31T21:45:46,497 | %u 2025-05-31T21:45:46,498 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-05-31T21:45:46,499 679 | maplength, (size_t) b * unitsz_distf_mapped); 2025-05-31T21:45:46,499 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:46,500 | | 2025-05-31T21:45:46,500 | unsigned int 2025-05-31T21:45:46,501 command_dist.c:715:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-05-31T21:45:46,501 715 | for (int n = 0; n < fco_pos[k + 1] - fco_pos[k]; n++) { 2025-05-31T21:45:46,502 | ^ 2025-05-31T21:45:46,502 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2025-05-31T21:45:46,503 command_dist.c:863:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-05-31T21:45:46,503 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-05-31T21:45:46,503 | ~~^ ~~~~~~~ 2025-05-31T21:45:46,504 | | | 2025-05-31T21:45:46,504 | long unsigned int size_t {aka unsigned int} 2025-05-31T21:45:46,505 | %u 2025-05-31T21:45:46,506 command_dist.c:863:93: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-05-31T21:45:46,506 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-05-31T21:45:46,507 | ~~^ 2025-05-31T21:45:46,507 | | 2025-05-31T21:45:46,508 | long unsigned int 2025-05-31T21:45:46,508 | %u 2025-05-31T21:45:46,509 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2025-05-31T21:45:46,509 | ~~~~~~~~~ 2025-05-31T21:45:46,510 | | 2025-05-31T21:45:46,511 | size_t {aka unsigned int} 2025-05-31T21:45:46,511 command_dist.c:863:98: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-05-31T21:45:46,512 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-05-31T21:45:46,513 | ~~^ 2025-05-31T21:45:46,513 | | 2025-05-31T21:45:46,514 | long unsigned int 2025-05-31T21:45:46,514 | %u 2025-05-31T21:45:46,515 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2025-05-31T21:45:46,515 865 | (size_t) b * unitsz_distf_mapped); 2025-05-31T21:45:46,516 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:46,517 | | 2025-05-31T21:45:46,517 | unsigned int 2025-05-31T21:45:46,518 command_dist.c:810:13: warning: unused variable ‘fco_pos’ [-Wunused-variable] 2025-05-31T21:45:46,518 810 | size_t *fco_pos = malloc(sizeof(size_t) * (co_dstat_readin.infile_num + 1)); 2025-05-31T21:45:46,519 | ^~~~~~~ 2025-05-31T21:45:46,519 command_dist.c:809:17: warning: unused variable ‘cbd_fcode_stat’ [-Wunused-variable] 2025-05-31T21:45:46,520 809 | struct stat cbd_fcode_stat; 2025-05-31T21:45:46,520 | ^~~~~~~~~~~~~~ 2025-05-31T21:45:46,521 command_dist.c:808:31: warning: unused variable ‘cbd_fcode_comp_index_fp’ [-Wunused-variable] 2025-05-31T21:45:46,521 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2025-05-31T21:45:46,522 | ^~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:46,522 command_dist.c:808:11: warning: unused variable ‘cbd_fcode_comp_fp’ [-Wunused-variable] 2025-05-31T21:45:46,523 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2025-05-31T21:45:46,523 | ^~~~~~~~~~~~~~~~~ 2025-05-31T21:45:46,524 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2025-05-31T21:45:46,525 command_dist.c:1018:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-05-31T21:45:46,526 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-05-31T21:45:46,526 | ~~^ 2025-05-31T21:45:46,527 | | 2025-05-31T21:45:46,528 | long unsigned int 2025-05-31T21:45:46,528 | %u 2025-05-31T21:45:46,529 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-05-31T21:45:46,530 | ~~~~~~~ 2025-05-31T21:45:46,531 | | 2025-05-31T21:45:46,531 | size_t {aka unsigned int} 2025-05-31T21:45:46,532 command_dist.c:1018:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-05-31T21:45:46,533 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-05-31T21:45:46,533 | ~~^ 2025-05-31T21:45:46,534 | | 2025-05-31T21:45:46,535 | long unsigned int 2025-05-31T21:45:46,536 | %u 2025-05-31T21:45:46,536 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-05-31T21:45:46,537 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2025-05-31T21:45:46,538 | ~~~~~~~~~ 2025-05-31T21:45:46,538 | | 2025-05-31T21:45:46,539 | size_t {aka unsigned int} 2025-05-31T21:45:46,540 command_dist.c:1018:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-05-31T21:45:46,540 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-05-31T21:45:46,541 | ~~^ 2025-05-31T21:45:46,541 | | 2025-05-31T21:45:46,542 | long unsigned int 2025-05-31T21:45:46,543 | %u 2025-05-31T21:45:46,543 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-05-31T21:45:46,544 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2025-05-31T21:45:46,544 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:46,545 | | 2025-05-31T21:45:46,545 | unsigned int 2025-05-31T21:45:46,546 command_dist.c:1034:27: warning: comparison of integer expressions of different signedness: ‘__off_t’ {aka ‘long int’} and ‘unsigned int’ [-Wsign-compare] 2025-05-31T21:45:46,547 1034 | if (s.st_size > sizeof(gidobj_t) * MCOMM_SZ) mco_mem = (gidobj_t *) realloc(mco_mem, s.st_size); 2025-05-31T21:45:46,547 | ^ 2025-05-31T21:45:46,548 command_dist.c: In function ‘mco_co_dist_core’: 2025-05-31T21:45:46,549 command_dist.c:1116:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘gidobj_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-05-31T21:45:46,549 1116 | for (int k = 1; k < unit_arrmco[ind][0] + 1; k++) { 2025-05-31T21:45:46,550 | ^ 2025-05-31T21:45:46,551 command_dist.c: In function ‘koc_dist_print_nobin’: 2025-05-31T21:45:46,551 command_dist.c:1239:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-05-31T21:45:46,552 1239 | for (int rid = 0; rid < ref_num; rid++) 2025-05-31T21:45:46,552 | ^ 2025-05-31T21:45:46,553 command_dist.c:1245:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-05-31T21:45:46,554 1245 | for (int rid = 0; rid < ref_num; rid++) { 2025-05-31T21:45:46,555 | ^ 2025-05-31T21:45:46,556 command_dist.c: In function ‘dist_print_nobin’: 2025-05-31T21:45:46,556 command_dist.c:1335:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-05-31T21:45:46,557 1335 | if ((N_max > NREF) || (N_max > ref_num)) { 2025-05-31T21:45:46,558 | ^ 2025-05-31T21:45:46,560 command_dist.c:1356:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-05-31T21:45:46,562 1356 | for (int rid = 0; rid < ref_num; rid++) { 2025-05-31T21:45:46,563 | ^ 2025-05-31T21:45:46,564 command_dist.c:1382:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-05-31T21:45:46,564 1382 | for (int rid = 0; rid < ref_num; rid++) 2025-05-31T21:45:46,565 | ^ 2025-05-31T21:45:46,924 command_dist.c: In function ‘run_stageI._omp_fn.1’: 2025-05-31T21:45:46,924 command_dist.c:403:21: warning: ‘com_abund_fp’ may be used uninitialized [-Wmaybe-uninitialized] 2025-05-31T21:45:46,925 403 | fwrite(tmp_mem, sizeof(unsigned short) * tmpkmerct, 1, com_abund_fp); 2025-05-31T21:45:46,925 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:46,926 command_dist.c:375:40: note: ‘com_abund_fp’ was declared here 2025-05-31T21:45:46,926 375 | FILE *com_cofp, *indexfp, *com_abund_fp; 2025-05-31T21:45:46,927 | ^~~~~~~~~~~~ 2025-05-31T21:45:47,757 command_dist.c: In function ‘get_dim_shuffle’: 2025-05-31T21:45:47,758 command_dist.c:267:36: warning: ‘%s’ directive writing up to 264 bytes into a region of size 256 [-Wformat-overflow=] 2025-05-31T21:45:47,758 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2025-05-31T21:45:47,759 | ^~ ~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:47,760 command_dist.c:267:9: note: ‘sprintf’ output between 6 and 270 bytes into a destination of size 256 2025-05-31T21:45:47,760 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2025-05-31T21:45:47,761 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:48,661 command_dist.c: In function ‘mco_cbd_co_dist’: 2025-05-31T21:45:48,662 command_dist.c:596:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T21:45:48,663 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-05-31T21:45:48,663 | ^~ ~~~~~~~~~ 2025-05-31T21:45:48,664 command_dist.c:596:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-05-31T21:45:48,664 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-05-31T21:45:48,665 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:48,666 command_dist.c:625:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-05-31T21:45:48,666 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-05-31T21:45:48,667 | ^~~~~~~~~~~~~~~ 2025-05-31T21:45:48,667 command_dist.c:625:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-05-31T21:45:48,668 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-05-31T21:45:48,668 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:48,669 command_dist.c:681:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-05-31T21:45:48,669 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-05-31T21:45:48,670 | ^~~~~~~~~~~ 2025-05-31T21:45:48,671 command_dist.c:681:38: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T21:45:48,672 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-05-31T21:45:48,673 | ^~~~~~~~~~~~~~~~~ 2025-05-31T21:45:48,673 command_dist.c:681:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2025-05-31T21:45:48,674 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-05-31T21:45:48,674 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:48,675 command_dist.c:682:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-05-31T21:45:48,675 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-05-31T21:45:48,676 | ^~~~~ 2025-05-31T21:45:48,676 command_dist.c:682:32: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T21:45:48,677 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-05-31T21:45:48,677 | ^~~~~~~~~~~ 2025-05-31T21:45:48,678 command_dist.c:682:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-05-31T21:45:48,678 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-05-31T21:45:48,679 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:48,910 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2025-05-31T21:45:48,911 command_dist.c:763:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T21:45:48,912 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-05-31T21:45:48,913 | ^~ ~~~~~~~~~ 2025-05-31T21:45:48,913 command_dist.c:763:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-05-31T21:45:48,914 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-05-31T21:45:48,915 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:48,915 command_dist.c:790:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-05-31T21:45:48,916 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-05-31T21:45:48,916 | ^~~~~~~~~~~~~~~ 2025-05-31T21:45:48,917 command_dist.c:790:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-05-31T21:45:48,918 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-05-31T21:45:48,918 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:48,919 command_dist.c:823:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-05-31T21:45:48,919 823 | sprintf(distf, "%s/distance.out", distout_dir); 2025-05-31T21:45:48,920 | ^~~~~~~~~~~~~ 2025-05-31T21:45:48,920 command_dist.c:823:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-05-31T21:45:48,921 823 | sprintf(distf, "%s/distance.out", distout_dir); 2025-05-31T21:45:48,921 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:48,922 command_dist.c:849:39: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T21:45:48,923 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-05-31T21:45:48,923 | ^ 2025-05-31T21:45:48,924 command_dist.c:849:33: note: directive argument in the range [0, 536870912] 2025-05-31T21:45:48,925 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-05-31T21:45:48,926 | ^~~~~~~~~~ 2025-05-31T21:45:48,927 command_dist.c:849:8: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2025-05-31T21:45:48,927 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-05-31T21:45:48,928 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:48,928 command_dist.c:851:34: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T21:45:48,929 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-05-31T21:45:48,929 | ^ 2025-05-31T21:45:48,929 command_dist.c:851:28: note: directive argument in the range [0, 536870912] 2025-05-31T21:45:48,930 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-05-31T21:45:48,931 | ^~~~~~~~~~ 2025-05-31T21:45:48,931 command_dist.c:851:9: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2025-05-31T21:45:48,932 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-05-31T21:45:48,932 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:49,189 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2025-05-31T21:45:49,191 command_dist.c:927:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T21:45:49,191 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-05-31T21:45:49,191 | ^~ ~~~~~~~~~ 2025-05-31T21:45:49,192 command_dist.c:927:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-05-31T21:45:49,193 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-05-31T21:45:49,193 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:49,194 command_dist.c:956:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-05-31T21:45:49,195 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-05-31T21:45:49,195 | ^~~~~~~~~~~~~~~ 2025-05-31T21:45:49,196 command_dist.c:956:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-05-31T21:45:49,196 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-05-31T21:45:49,197 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:49,198 command_dist.c:990:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-05-31T21:45:49,199 990 | sprintf(distf, "%s/distance.out", distout_dir); 2025-05-31T21:45:49,199 | ^~~~~~~~~~~~~ 2025-05-31T21:45:49,200 command_dist.c:990:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-05-31T21:45:49,200 990 | sprintf(distf, "%s/distance.out", distout_dir); 2025-05-31T21:45:49,201 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:49,201 command_dist.c:1022:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-05-31T21:45:49,202 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-05-31T21:45:49,202 | ^~~~~~~~~~~ 2025-05-31T21:45:49,203 command_dist.c:1022:38: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T21:45:49,203 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-05-31T21:45:49,204 | ^~~~~~~~~~~~~~~~~ 2025-05-31T21:45:49,205 command_dist.c:1022:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2025-05-31T21:45:49,206 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-05-31T21:45:49,206 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:49,207 command_dist.c:1023:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-05-31T21:45:49,208 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-05-31T21:45:49,208 | ^~~~~ 2025-05-31T21:45:49,209 command_dist.c:1023:32: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T21:45:49,209 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-05-31T21:45:49,210 | ^~~~~~~~~~~ 2025-05-31T21:45:49,210 command_dist.c:1023:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-05-31T21:45:49,211 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-05-31T21:45:49,211 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:49,485 command_dist.c: In function ‘combine_queries’: 2025-05-31T21:45:49,487 command_dist.c:1492:41: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-05-31T21:45:49,487 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2025-05-31T21:45:49,488 | ^ 2025-05-31T21:45:49,488 command_dist.c:1492:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-05-31T21:45:49,489 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2025-05-31T21:45:49,489 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:49,490 command_dist.c:1499:40: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-05-31T21:45:49,491 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2025-05-31T21:45:49,491 | ^ 2025-05-31T21:45:49,492 command_dist.c:1499:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-05-31T21:45:49,493 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2025-05-31T21:45:49,493 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:49,494 command_dist.c:1603:32: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T21:45:49,495 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2025-05-31T21:45:49,496 | ^~ ~~~~~~~~ 2025-05-31T21:45:49,496 command_dist.c:1603:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-05-31T21:45:49,497 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2025-05-31T21:45:49,497 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:49,976 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c command_dist_wrapper.c -o build/temp.linux-armv7l-cpython-311/command_dist_wrapper.o -fopenmp 2025-05-31T21:45:50,148 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c command_set.c -o build/temp.linux-armv7l-cpython-311/command_set.o -fopenmp 2025-05-31T21:45:50,316 command_set.c: In function ‘sketch_operate’: 2025-05-31T21:45:50,317 command_set.c:178:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-05-31T21:45:50,318 178 | for(int n = 0; n < fco_pos[i+1] - fco_pos[i]; n++){ 2025-05-31T21:45:50,318 | ^ 2025-05-31T21:45:50,330 command_set.c: In function ‘combin_subset_pans’: 2025-05-31T21:45:50,330 command_set.c:457:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2025-05-31T21:45:50,331 457 | free(co_dstat_fpath); 2025-05-31T21:45:50,331 | ^~~~~~~~~~~~~~ 2025-05-31T21:45:50,332 In file included from kssdheaders/global_basic.h:159, 2025-05-31T21:45:50,333 from command_set.c:15: 2025-05-31T21:45:50,333 /usr/include/stdlib.h:568:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2025-05-31T21:45:50,334 568 | extern void free (void *__ptr) __THROW; 2025-05-31T21:45:50,334 | ~~~~~~^~~~~ 2025-05-31T21:45:50,338 command_set.c: In function ‘grouping_genomes’: 2025-05-31T21:45:50,339 command_set.c:562:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2025-05-31T21:45:50,339 562 | free(co_dstat_fpath); 2025-05-31T21:45:50,340 | ^~~~~~~~~~~~~~ 2025-05-31T21:45:50,340 /usr/include/stdlib.h:568:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2025-05-31T21:45:50,341 568 | extern void free (void *__ptr) __THROW; 2025-05-31T21:45:50,342 | ~~~~~~^~~~~ 2025-05-31T21:45:50,513 command_set.c: In function ‘sketch_union’: 2025-05-31T21:45:50,514 command_set.c:71:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-05-31T21:45:50,514 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-05-31T21:45:50,515 | ^ 2025-05-31T21:45:50,516 command_set.c:71:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-05-31T21:45:50,516 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-05-31T21:45:50,517 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:50,518 command_set.c:82:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T21:45:50,519 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-05-31T21:45:50,519 | ^~ ~~~~~~~~~~~ 2025-05-31T21:45:50,520 command_set.c:82:25: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T21:45:50,521 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-05-31T21:45:50,522 | ^~~~~~~~~~ 2025-05-31T21:45:50,522 command_set.c:82:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-05-31T21:45:50,523 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-05-31T21:45:50,523 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:50,524 command_set.c:92:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T21:45:50,525 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2025-05-31T21:45:50,525 | ^~ ~~~~~~~~~~ 2025-05-31T21:45:50,526 command_set.c:92:25: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T21:45:50,527 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2025-05-31T21:45:50,528 | ^~~~~~~~~~ 2025-05-31T21:45:50,528 command_set.c:92:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-05-31T21:45:50,529 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2025-05-31T21:45:50,530 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:50,649 command_set.c: In function ‘sketch_operate’: 2025-05-31T21:45:50,650 command_set.c:153:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T21:45:50,650 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2025-05-31T21:45:50,651 | ^~ ~~~~~~~~~~ 2025-05-31T21:45:50,651 command_set.c:153:25: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T21:45:50,652 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2025-05-31T21:45:50,652 | ^~~~~~~~~~ 2025-05-31T21:45:50,653 command_set.c:153:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-05-31T21:45:50,653 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2025-05-31T21:45:50,654 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:50,655 command_set.c:155:33: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T21:45:50,655 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2025-05-31T21:45:50,656 | ^~ ~~~~~~~~~~~~~~~ 2025-05-31T21:45:50,657 command_set.c:155:29: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T21:45:50,657 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2025-05-31T21:45:50,658 | ^~~~~~~~~~ 2025-05-31T21:45:50,659 command_set.c:155:13: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2025-05-31T21:45:50,659 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2025-05-31T21:45:50,660 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:50,661 command_set.c:165:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T21:45:50,661 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2025-05-31T21:45:50,662 | ^~ ~~~~~~~~~~~ 2025-05-31T21:45:50,662 command_set.c:165:25: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T21:45:50,663 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2025-05-31T21:45:50,664 | ^~~~~~~~~~~~~~~~ 2025-05-31T21:45:50,664 command_set.c:165:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-05-31T21:45:50,665 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2025-05-31T21:45:50,666 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:50,666 command_set.c:169:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T21:45:50,667 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2025-05-31T21:45:50,668 | ^~ ~~~~~~~~~~~ 2025-05-31T21:45:50,668 command_set.c:169:25: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T21:45:50,669 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2025-05-31T21:45:50,670 | ^~~~~~~~~~ 2025-05-31T21:45:50,671 command_set.c:169:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-05-31T21:45:50,671 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2025-05-31T21:45:50,672 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:50,673 command_set.c:174:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T21:45:50,673 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2025-05-31T21:45:50,674 | ^~ ~~~~~~~~~~~ 2025-05-31T21:45:50,674 command_set.c:174:25: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T21:45:50,675 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2025-05-31T21:45:50,675 | ^~~~~~~~~~ 2025-05-31T21:45:50,676 command_set.c:174:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-05-31T21:45:50,676 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2025-05-31T21:45:50,676 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:50,677 command_set.c:187:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T21:45:50,677 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2025-05-31T21:45:50,678 | ^~ ~~~~~~~~~~~ 2025-05-31T21:45:50,678 command_set.c:187:25: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T21:45:50,679 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2025-05-31T21:45:50,680 | ^~~~~~~~~~~~~~~~ 2025-05-31T21:45:50,681 command_set.c:187:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-05-31T21:45:50,681 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2025-05-31T21:45:50,682 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:50,683 command_set.c:192:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-05-31T21:45:50,683 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-05-31T21:45:50,684 | ^ 2025-05-31T21:45:50,685 command_set.c:192:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-05-31T21:45:50,686 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-05-31T21:45:50,686 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:50,827 command_set.c: In function ‘uniq_sketch_union’: 2025-05-31T21:45:50,828 command_set.c:219:39: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-05-31T21:45:50,828 219 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2025-05-31T21:45:50,829 | ^ 2025-05-31T21:45:50,830 command_set.c:219:17: note: ‘sprintf’ output between 11 and 21 bytes into a destination of size 20 2025-05-31T21:45:50,830 219 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2025-05-31T21:45:50,831 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:50,831 command_set.c:234:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-05-31T21:45:50,832 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-05-31T21:45:50,833 | ^ 2025-05-31T21:45:50,834 command_set.c:234:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-05-31T21:45:50,834 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-05-31T21:45:50,835 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:50,836 command_set.c:247:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T21:45:50,836 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-05-31T21:45:50,837 | ^~ ~~~~~~~~~~~ 2025-05-31T21:45:50,837 command_set.c:247:25: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T21:45:50,838 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-05-31T21:45:50,838 | ^~~~~~~~~~ 2025-05-31T21:45:50,839 command_set.c:247:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-05-31T21:45:50,839 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-05-31T21:45:50,840 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:50,840 command_set.c:259:29: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T21:45:50,841 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2025-05-31T21:45:50,842 | ^~ ~~~~~~~~~~~~~~~ 2025-05-31T21:45:50,842 command_set.c:259:25: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T21:45:50,843 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2025-05-31T21:45:50,843 | ^~~~~~~~~~ 2025-05-31T21:45:50,844 command_set.c:259:9: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2025-05-31T21:45:50,844 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2025-05-31T21:45:50,845 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:50,975 command_set.c: In function ‘combin_pans’: 2025-05-31T21:45:50,976 command_set.c:297:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T21:45:50,976 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-05-31T21:45:50,977 | ^~ ~~~~~~~~~~~ 2025-05-31T21:45:50,978 command_set.c:297:25: note: directive argument in the range [0, 1073741823] 2025-05-31T21:45:50,978 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-05-31T21:45:50,979 | ^~~~~~~~~~ 2025-05-31T21:45:50,980 command_set.c:297:9: note: ‘sprintf’ output between 10 and 274 bytes into a destination of size 256 2025-05-31T21:45:50,981 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-05-31T21:45:50,981 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:50,982 command_set.c:300:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T21:45:50,982 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-05-31T21:45:50,983 | ^~ ~~~~~~~~~~ 2025-05-31T21:45:50,984 command_set.c:300:25: note: directive argument in the range [0, 1073741823] 2025-05-31T21:45:50,984 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-05-31T21:45:50,985 | ^~~~~~~~~~ 2025-05-31T21:45:50,986 command_set.c:300:9: note: ‘sprintf’ output between 16 and 280 bytes into a destination of size 256 2025-05-31T21:45:50,986 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-05-31T21:45:50,987 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:50,988 command_set.c:342:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-05-31T21:45:50,989 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-05-31T21:45:50,989 | ^ 2025-05-31T21:45:50,990 command_set.c:342:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-05-31T21:45:50,990 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-05-31T21:45:50,991 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:51,196 command_set.c: In function ‘combin_subset_pans’: 2025-05-31T21:45:51,197 command_set.c:469:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T21:45:51,197 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-05-31T21:45:51,198 | ^~ ~~~~~~~~~~~ 2025-05-31T21:45:51,198 command_set.c:469:25: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T21:45:51,198 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-05-31T21:45:51,199 | ^~~~~~~~~~ 2025-05-31T21:45:51,199 command_set.c:469:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-05-31T21:45:51,200 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-05-31T21:45:51,200 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:51,201 command_set.c:475:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T21:45:51,201 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-05-31T21:45:51,202 | ^~ ~~~~~~~~~~ 2025-05-31T21:45:51,202 command_set.c:475:25: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T21:45:51,203 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-05-31T21:45:51,204 | ^~~~~~~~~~ 2025-05-31T21:45:51,204 command_set.c:475:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-05-31T21:45:51,205 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-05-31T21:45:51,206 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:51,206 command_set.c:481:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T21:45:51,207 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-05-31T21:45:51,207 | ^~ ~~~~~~~~~~~ 2025-05-31T21:45:51,208 command_set.c:481:25: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T21:45:51,209 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-05-31T21:45:51,209 | ^~~~~~~~~~ 2025-05-31T21:45:51,210 command_set.c:481:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-05-31T21:45:51,211 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-05-31T21:45:51,211 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:51,212 command_set.c:512:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T21:45:51,213 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-05-31T21:45:51,213 | ^~ ~~~~~~~~~~ 2025-05-31T21:45:51,214 command_set.c:512:25: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T21:45:51,215 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-05-31T21:45:51,215 | ^~~~~~~~~~ 2025-05-31T21:45:51,216 command_set.c:512:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-05-31T21:45:51,217 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-05-31T21:45:51,217 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:51,218 command_set.c:523:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-05-31T21:45:51,218 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-05-31T21:45:51,219 | ^ 2025-05-31T21:45:51,219 command_set.c:523:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-05-31T21:45:51,219 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-05-31T21:45:51,220 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:51,446 command_set.c: In function ‘grouping_genomes’: 2025-05-31T21:45:51,447 command_set.c:574:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T21:45:51,447 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-05-31T21:45:51,448 | ^~ ~~~~~~~~~~~ 2025-05-31T21:45:51,448 command_set.c:574:25: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T21:45:51,449 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-05-31T21:45:51,449 | ^~~~~~~~~~ 2025-05-31T21:45:51,450 command_set.c:574:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-05-31T21:45:51,450 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-05-31T21:45:51,451 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:51,451 command_set.c:580:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T21:45:51,452 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-05-31T21:45:51,453 | ^~ ~~~~~~~~~~ 2025-05-31T21:45:51,453 command_set.c:580:25: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T21:45:51,454 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-05-31T21:45:51,455 | ^~~~~~~~~~ 2025-05-31T21:45:51,455 command_set.c:580:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-05-31T21:45:51,456 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-05-31T21:45:51,456 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:51,457 command_set.c:612:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T21:45:51,457 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-05-31T21:45:51,458 | ^~ ~~~~~~~~~~~ 2025-05-31T21:45:51,459 command_set.c:612:25: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T21:45:51,459 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-05-31T21:45:51,460 | ^~~~~~~~~~ 2025-05-31T21:45:51,461 command_set.c:612:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-05-31T21:45:51,462 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-05-31T21:45:51,462 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:51,463 command_set.c:634:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T21:45:51,464 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-05-31T21:45:51,465 | ^~ ~~~~~~~~~~ 2025-05-31T21:45:51,465 command_set.c:634:25: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T21:45:51,466 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-05-31T21:45:51,466 | ^~~~~~~~~~ 2025-05-31T21:45:51,467 command_set.c:634:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-05-31T21:45:51,467 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-05-31T21:45:51,468 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:51,468 command_set.c:645:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-05-31T21:45:51,469 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-05-31T21:45:51,469 | ^ 2025-05-31T21:45:51,470 command_set.c:645:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-05-31T21:45:51,470 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-05-31T21:45:51,471 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T21:45:51,751 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c command_shuffle.c -o build/temp.linux-armv7l-cpython-311/command_shuffle.o -fopenmp 2025-05-31T21:45:52,060 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c global_basic.c -o build/temp.linux-armv7l-cpython-311/global_basic.o -fopenmp 2025-05-31T21:45:52,237 global_basic.c: In function ‘organize_infile_list’: 2025-05-31T21:45:52,238 global_basic.c:195:20: warning: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 2025-05-31T21:45:52,239 195 | while (isspace(*buf)) buf++; 2025-05-31T21:45:52,239 | ^~~~~~~ 2025-05-31T21:45:52,240 global_basic.c:35:1: note: include ‘’ or provide a declaration of ‘isspace’ 2025-05-31T21:45:52,241 34 | #include 2025-05-31T21:45:52,241 +++ |+#include 2025-05-31T21:45:52,242 35 | 2025-05-31T21:45:52,243 global_basic.c:201:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-05-31T21:45:52,243 201 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2025-05-31T21:45:52,244 | ~~^ 2025-05-31T21:45:52,245 | | 2025-05-31T21:45:52,245 | long unsigned int 2025-05-31T21:45:52,246 | %u 2025-05-31T21:45:52,247 202 | list_path, file_num, buf, strlen(buf), PATHLEN); 2025-05-31T21:45:52,248 | ~~~~~~~~~~~ 2025-05-31T21:45:52,248 | | 2025-05-31T21:45:52,249 | size_t {aka unsigned int} 2025-05-31T21:45:52,250 global_basic.c:233:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-05-31T21:45:52,251 233 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2025-05-31T21:45:52,252 | ~~^ 2025-05-31T21:45:52,253 | | 2025-05-31T21:45:52,254 | long unsigned int 2025-05-31T21:45:52,254 | %u 2025-05-31T21:45:52,255 234 | list_path, file_num, buf, strlen(buf), PATHLEN); 2025-05-31T21:45:52,256 | ~~~~~~~~~~~ 2025-05-31T21:45:52,256 | | 2025-05-31T21:45:52,257 | size_t {aka unsigned int} 2025-05-31T21:45:53,029 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c iseq2comem.c -o build/temp.linux-armv7l-cpython-311/iseq2comem.o -fopenmp 2025-05-31T21:45:53,208 iseq2comem.c: In function ‘reads2mco’: 2025-05-31T21:45:53,209 iseq2comem.c:156:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-05-31T21:45:53,210 156 | if (base > TL) { 2025-05-31T21:45:53,210 | ^ 2025-05-31T21:45:53,211 iseq2comem.c:160:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-05-31T21:45:53,211 160 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-05-31T21:45:53,212 | ^~ 2025-05-31T21:45:53,213 iseq2comem.c:160:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-05-31T21:45:53,214 160 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-05-31T21:45:53,214 | ^ 2025-05-31T21:45:53,215 iseq2comem.c: In function ‘fasta2co’: 2025-05-31T21:45:53,216 iseq2comem.c:240:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-05-31T21:45:53,217 240 | if (base > TL) { 2025-05-31T21:45:53,217 | ^ 2025-05-31T21:45:53,218 iseq2comem.c:244:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-05-31T21:45:53,219 244 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-05-31T21:45:53,219 | ^~ 2025-05-31T21:45:53,220 iseq2comem.c:244:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-05-31T21:45:53,221 244 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-05-31T21:45:53,221 | ^ 2025-05-31T21:45:53,222 iseq2comem.c: In function ‘fastq2co’: 2025-05-31T21:45:53,223 iseq2comem.c:274:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare] 2025-05-31T21:45:53,223 274 | if (M >= CT_MAX) fprintf(stderr, "fastq2co(): Occurence num should smaller than %d", (int) CT_MAX); 2025-05-31T21:45:53,224 | ^~ 2025-05-31T21:45:53,225 iseq2comem.c:320:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-05-31T21:45:53,226 320 | if (base > TL) { 2025-05-31T21:45:53,227 | ^ 2025-05-31T21:45:53,227 iseq2comem.c:324:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-05-31T21:45:53,228 324 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-05-31T21:45:53,228 | ^~ 2025-05-31T21:45:53,229 iseq2comem.c:324:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-05-31T21:45:53,229 324 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-05-31T21:45:53,230 | ^ 2025-05-31T21:45:53,230 iseq2comem.c:343:44: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare] 2025-05-31T21:45:53,231 343 | if (!((co[n] & CT_MAX) < M)) co[n] |= CT_MAX; 2025-05-31T21:45:53,231 | ^ 2025-05-31T21:45:53,232 iseq2comem.c: In function ‘fastq2koc’: 2025-05-31T21:45:53,232 iseq2comem.c:405:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-05-31T21:45:53,233 405 | if (base > TL) { 2025-05-31T21:45:53,233 | ^ 2025-05-31T21:45:53,235 iseq2comem.c:409:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-05-31T21:45:53,236 409 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-05-31T21:45:53,236 | ^~ 2025-05-31T21:45:53,237 iseq2comem.c:409:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-05-31T21:45:53,238 409 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-05-31T21:45:53,239 | ^ 2025-05-31T21:45:53,240 iseq2comem.c: In function ‘mt_shortreads2koc’: 2025-05-31T21:45:53,240 iseq2comem.c:585:34: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-05-31T21:45:53,241 585 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-05-31T21:45:53,242 | ^~ 2025-05-31T21:45:53,243 iseq2comem.c:585:58: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-05-31T21:45:53,243 585 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-05-31T21:45:53,244 | ^ 2025-05-31T21:45:54,582 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c mman.c -o build/temp.linux-armv7l-cpython-311/mman.o -fopenmp 2025-05-31T21:45:54,637 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c mytime.c -o build/temp.linux-armv7l-cpython-311/mytime.o -fopenmp 2025-05-31T21:45:54,759 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c pykssd.c -o build/temp.linux-armv7l-cpython-311/pykssd.o -fopenmp 2025-05-31T21:45:55,141 pykssd.c: In function ‘py_dist_dispatch’: 2025-05-31T21:45:55,142 pykssd.c:339:13: warning: unused variable ‘state1’ [-Wunused-variable] 2025-05-31T21:45:55,143 339 | int state1 = dist_dispatch(&dist_opt_val1); 2025-05-31T21:45:55,143 | ^~~~~~ 2025-05-31T21:45:55,145 pykssd.c:404:13: warning: unused variable ‘state2’ [-Wunused-variable] 2025-05-31T21:45:55,145 404 | int state2 = dist_dispatch(&dist_opt_val2); 2025-05-31T21:45:55,146 | ^~~~~~ 2025-05-31T21:45:55,148 pykssd.c:538:13: warning: unused variable ‘state4’ [-Wunused-variable] 2025-05-31T21:45:55,149 538 | int state4 = dist_dispatch(&dist_opt_val4); 2025-05-31T21:45:55,150 | ^~~~~~ 2025-05-31T21:45:55,804 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/co2mco.o build/temp.linux-armv7l-cpython-311/command_composite.o build/temp.linux-armv7l-cpython-311/command_dist.o build/temp.linux-armv7l-cpython-311/command_dist_wrapper.o build/temp.linux-armv7l-cpython-311/command_set.o build/temp.linux-armv7l-cpython-311/command_shuffle.o build/temp.linux-armv7l-cpython-311/global_basic.o build/temp.linux-armv7l-cpython-311/iseq2comem.o build/temp.linux-armv7l-cpython-311/mman.o build/temp.linux-armv7l-cpython-311/mytime.o build/temp.linux-armv7l-cpython-311/pykssd.o -L/usr/lib/arm-linux-gnueabihf -lz -o build/lib.linux-armv7l-cpython-311/kssdtool.cpython-311-arm-linux-gnueabihf.so -fopenmp 2025-05-31T21:45:55,986 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-05-31T21:45:55,987 !! 2025-05-31T21:45:55,988 ******************************************************************************** 2025-05-31T21:45:55,989 Please avoid running ``setup.py`` directly. 2025-05-31T21:45:55,989 Instead, use pypa/build, pypa/installer or other 2025-05-31T21:45:55,990 standards-based tools. 2025-05-31T21:45:55,991 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-05-31T21:45:55,992 or your builds will no longer be supported. 2025-05-31T21:45:55,993 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-05-31T21:45:55,994 ******************************************************************************** 2025-05-31T21:45:55,995 !! 2025-05-31T21:45:55,996 self.initialize_options() 2025-05-31T21:45:56,019 installing to build/bdist.linux-armv7l/wheel 2025-05-31T21:45:56,019 running install 2025-05-31T21:45:56,043 running install_lib 2025-05-31T21:45:56,070 creating build/bdist.linux-armv7l/wheel 2025-05-31T21:45:56,072 copying build/lib.linux-armv7l-cpython-311/kssdutils.py -> build/bdist.linux-armv7l/wheel/. 2025-05-31T21:45:56,075 copying build/lib.linux-armv7l-cpython-311/kssdtool.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/. 2025-05-31T21:45:56,086 running install_egg_info 2025-05-31T21:45:56,120 Copying kssdutils.egg-info to build/bdist.linux-armv7l/wheel/./kssdutils-1.1.2-py3.11.egg-info 2025-05-31T21:45:56,135 running install_scripts 2025-05-31T21:45:56,186 creating build/bdist.linux-armv7l/wheel/kssdutils-1.1.2.dist-info/WHEEL 2025-05-31T21:45:56,189 creating '/tmp/pip-wheel-5kt2hsp4/kssdutils-1.1.2-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-05-31T21:45:56,272 adding 'kssdtool.cpython-311-arm-linux-gnueabihf.so' 2025-05-31T21:45:56,277 adding 'kssdutils.py' 2025-05-31T21:45:56,280 adding 'kssdutils-1.1.2.dist-info/METADATA' 2025-05-31T21:45:56,281 adding 'kssdutils-1.1.2.dist-info/WHEEL' 2025-05-31T21:45:56,283 adding 'kssdutils-1.1.2.dist-info/dependency_links.txt' 2025-05-31T21:45:56,284 adding 'kssdutils-1.1.2.dist-info/top_level.txt' 2025-05-31T21:45:56,285 adding 'kssdutils-1.1.2.dist-info/RECORD' 2025-05-31T21:45:56,290 removing build/bdist.linux-armv7l/wheel 2025-05-31T21:45:56,425 Building wheel for kssdutils (setup.py): finished with status 'done' 2025-05-31T21:45:56,429 Created wheel for kssdutils: filename=kssdutils-1.1.2-cp311-cp311-linux_armv7l.whl size=181552 sha256=aae5676066e2d651e6883867221d727acb24b9ccd831cc4209fb7b18df10cfbb 2025-05-31T21:45:56,431 Stored in directory: /tmp/pip-ephem-wheel-cache-bmnu56pv/wheels/e9/d0/53/29a0a0a6ab8aeb01e64201227e89c9e21687e5d7f6d561a9bd 2025-05-31T21:45:56,440 Successfully built kssdutils 2025-05-31T21:45:56,450 Removed build tracker: '/tmp/pip-build-tracker-e4uluf8k'