2025-05-31T22:18:33,176 Created temporary directory: /tmp/pip-build-tracker-uu9u_btq 2025-05-31T22:18:33,177 Initialized build tracking at /tmp/pip-build-tracker-uu9u_btq 2025-05-31T22:18:33,178 Created build tracker: /tmp/pip-build-tracker-uu9u_btq 2025-05-31T22:18:33,178 Entered build tracker: /tmp/pip-build-tracker-uu9u_btq 2025-05-31T22:18:33,179 Created temporary directory: /tmp/pip-wheel-1g6jtoxl 2025-05-31T22:18:33,184 Created temporary directory: /tmp/pip-ephem-wheel-cache-x7o7g7p8 2025-05-31T22:18:33,234 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-05-31T22:18:33,236 2 location(s) to search for versions of kssdutils: 2025-05-31T22:18:33,236 * https://pypi.org/simple/kssdutils/ 2025-05-31T22:18:33,236 * https://www.piwheels.org/simple/kssdutils/ 2025-05-31T22:18:33,237 Fetching project page and analyzing links: https://pypi.org/simple/kssdutils/ 2025-05-31T22:18:33,237 Getting page https://pypi.org/simple/kssdutils/ 2025-05-31T22:18:33,239 Found index url https://pypi.org/simple/ 2025-05-31T22:18:33,464 Fetched page https://pypi.org/simple/kssdutils/ as application/vnd.pypi.simple.v1+json 2025-05-31T22:18:33,469 Found link https://files.pythonhosted.org/packages/61/ef/1bdb91b53dbe31ea0be28ab2c2292994b6228b357a8d54b69ac642f81f01/kssdutils-1.0.0.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.0 2025-05-31T22:18:33,470 Found link https://files.pythonhosted.org/packages/6f/f6/cc67acf92ea770b5f6a8bd97d375432881861935beafe9ebd4031a73482c/kssdutils-1.0.1.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.1 2025-05-31T22:18:33,471 Found link https://files.pythonhosted.org/packages/57/17/dd41697db7220423d0ab77f9f035b9a347edc1edefc2c35d9890178cbe17/kssdutils-1.0.2.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.2 2025-05-31T22:18:33,473 Found link https://files.pythonhosted.org/packages/3e/92/7a94130bd54e0e3dd20c1a609aef2f24875b86e9d61752f63b500d3f86f5/kssdutils-1.0.3.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.3 2025-05-31T22:18:33,474 Found link https://files.pythonhosted.org/packages/42/01/15ec102f7ac6b4fc3158ba60de64598a005cefffc773fa69eecbd3c9b016/kssdutils-1.0.5.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.5 2025-05-31T22:18:33,475 Found link https://files.pythonhosted.org/packages/aa/08/08fa5f76478fd3dbe9534ad21332b5dc03826197935c2b696e189af49f0b/kssdutils-1.0.6.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.6 2025-05-31T22:18:33,476 Found link https://files.pythonhosted.org/packages/78/17/7776b7c3b149fedfb0fba98bce07fdf08cb53773dafa174f7fda9ce4df55/kssdutils-1.0.7.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.7 2025-05-31T22:18:33,477 Found link https://files.pythonhosted.org/packages/a7/50/138f2b5f98dcd2327609362e505af19857468da67dba88eaf6c8d8fdb83a/kssdutils-1.1.0.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.0 2025-05-31T22:18:33,479 Found link https://files.pythonhosted.org/packages/be/be/659d775f3dd37e727d782fa46b7b665e69a59c78312fa5fc1bad8640f980/kssdutils-1.1.2.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.2 2025-05-31T22:18:33,480 Found link https://files.pythonhosted.org/packages/d0/e9/badb25888a9e48aa82e2389e848aff81ae6affd17af96622974dc314ae52/kssdutils-1.1.3.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.3 2025-05-31T22:18:33,481 Found link https://files.pythonhosted.org/packages/b3/43/18e812a7529c356cfa20627f201f1956e4b8203e1db782861ad6e5900bf8/kssdutils-1.1.4.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.4 2025-05-31T22:18:33,482 Found link https://files.pythonhosted.org/packages/98/8c/0eb4850f10a9da51072d7be474ecffd0f808423f21838f543dc88db7ddd2/kssdutils-1.1.5.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.5 2025-05-31T22:18:33,483 Fetching project page and analyzing links: https://www.piwheels.org/simple/kssdutils/ 2025-05-31T22:18:33,484 Getting page https://www.piwheels.org/simple/kssdutils/ 2025-05-31T22:18:33,485 Found index url https://www.piwheels.org/simple/ 2025-05-31T22:18:33,663 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/kssdutils/ 2025-05-31T22:18:34,320 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/kssdutils/ 2025-05-31T22:18:35,488 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/kssdutils/ 2025-05-31T22:18:37,660 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/kssdutils/ 2025-05-31T22:18:41,844 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/kssdutils/ 2025-05-31T22:18:42,013 Could not fetch URL https://www.piwheels.org/simple/kssdutils/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/kssdutils/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping 2025-05-31T22:18:42,015 Skipping link: not a file: https://www.piwheels.org/simple/kssdutils/ 2025-05-31T22:18:42,016 Skipping link: not a file: https://pypi.org/simple/kssdutils/ 2025-05-31T22:18:42,040 Given no hashes to check 1 links for project 'kssdutils': discarding no candidates 2025-05-31T22:18:42,042 Collecting kssdutils==1.1.3 2025-05-31T22:18:42,044 Created temporary directory: /tmp/pip-unpack-blstygan 2025-05-31T22:18:42,909 Downloading kssdutils-1.1.3.tar.gz (47 kB) 2025-05-31T22:18:43,037 Added kssdutils==1.1.3 from https://files.pythonhosted.org/packages/d0/e9/badb25888a9e48aa82e2389e848aff81ae6affd17af96622974dc314ae52/kssdutils-1.1.3.tar.gz to build tracker '/tmp/pip-build-tracker-uu9u_btq' 2025-05-31T22:18:43,040 Running setup.py (path:/tmp/pip-wheel-1g6jtoxl/kssdutils_ca0dcfa128cd4626ac0238506ae7edc5/setup.py) egg_info for package kssdutils 2025-05-31T22:18:43,041 Created temporary directory: /tmp/pip-pip-egg-info-uxd8749k 2025-05-31T22:18:43,042 Preparing metadata (setup.py): started 2025-05-31T22:18:43,043 Running command python setup.py egg_info 2025-05-31T22:18:43,966 running egg_info 2025-05-31T22:18:43,994 creating /tmp/pip-pip-egg-info-uxd8749k/kssdutils.egg-info 2025-05-31T22:18:43,995 writing /tmp/pip-pip-egg-info-uxd8749k/kssdutils.egg-info/PKG-INFO 2025-05-31T22:18:43,998 writing dependency_links to /tmp/pip-pip-egg-info-uxd8749k/kssdutils.egg-info/dependency_links.txt 2025-05-31T22:18:44,000 writing requirements to /tmp/pip-pip-egg-info-uxd8749k/kssdutils.egg-info/requires.txt 2025-05-31T22:18:44,001 writing top-level names to /tmp/pip-pip-egg-info-uxd8749k/kssdutils.egg-info/top_level.txt 2025-05-31T22:18:44,003 writing manifest file '/tmp/pip-pip-egg-info-uxd8749k/kssdutils.egg-info/SOURCES.txt' 2025-05-31T22:18:44,116 reading manifest file '/tmp/pip-pip-egg-info-uxd8749k/kssdutils.egg-info/SOURCES.txt' 2025-05-31T22:18:44,118 reading manifest template 'MANIFEST.in' 2025-05-31T22:18:44,126 writing manifest file '/tmp/pip-pip-egg-info-uxd8749k/kssdutils.egg-info/SOURCES.txt' 2025-05-31T22:18:44,233 Preparing metadata (setup.py): finished with status 'done' 2025-05-31T22:18:44,237 Source in /tmp/pip-wheel-1g6jtoxl/kssdutils_ca0dcfa128cd4626ac0238506ae7edc5 has version 1.1.3, which satisfies requirement kssdutils==1.1.3 from https://files.pythonhosted.org/packages/d0/e9/badb25888a9e48aa82e2389e848aff81ae6affd17af96622974dc314ae52/kssdutils-1.1.3.tar.gz 2025-05-31T22:18:44,238 Removed kssdutils==1.1.3 from https://files.pythonhosted.org/packages/d0/e9/badb25888a9e48aa82e2389e848aff81ae6affd17af96622974dc314ae52/kssdutils-1.1.3.tar.gz from build tracker '/tmp/pip-build-tracker-uu9u_btq' 2025-05-31T22:18:44,242 Created temporary directory: /tmp/pip-unpack-uah055f9 2025-05-31T22:18:44,243 Created temporary directory: /tmp/pip-unpack-o1_jjc4b 2025-05-31T22:18:44,244 Building wheels for collected packages: kssdutils 2025-05-31T22:18:44,247 Created temporary directory: /tmp/pip-wheel-bavjdfpu 2025-05-31T22:18:44,248 DEPRECATION: Building 'kssdutils' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'kssdutils'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-05-31T22:18:44,249 Building wheel for kssdutils (setup.py): started 2025-05-31T22:18:44,250 Destination directory: /tmp/pip-wheel-bavjdfpu 2025-05-31T22:18:44,251 Running command python setup.py bdist_wheel 2025-05-31T22:18:45,301 running bdist_wheel 2025-05-31T22:18:45,440 running build 2025-05-31T22:18:45,441 running build_py 2025-05-31T22:18:45,472 creating build/lib.linux-armv7l-cpython-311 2025-05-31T22:18:45,473 copying kssdutils.py -> build/lib.linux-armv7l-cpython-311 2025-05-31T22:18:45,476 running egg_info 2025-05-31T22:18:45,504 writing kssdutils.egg-info/PKG-INFO 2025-05-31T22:18:45,507 writing dependency_links to kssdutils.egg-info/dependency_links.txt 2025-05-31T22:18:45,509 writing requirements to kssdutils.egg-info/requires.txt 2025-05-31T22:18:45,511 writing top-level names to kssdutils.egg-info/top_level.txt 2025-05-31T22:18:45,542 reading manifest file 'kssdutils.egg-info/SOURCES.txt' 2025-05-31T22:18:45,546 reading manifest template 'MANIFEST.in' 2025-05-31T22:18:45,554 writing manifest file 'kssdutils.egg-info/SOURCES.txt' 2025-05-31T22:18:45,556 running build_ext 2025-05-31T22:18:45,986 building 'kssdtool' extension 2025-05-31T22:18:45,987 creating build/temp.linux-armv7l-cpython-311 2025-05-31T22:18:45,989 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c co2mco.c -o build/temp.linux-armv7l-cpython-311/co2mco.o -fopenmp 2025-05-31T22:18:46,178 co2mco.c: In function ‘cdb_kmerf2kmerdb’: 2025-05-31T22:18:46,179 co2mco.c:109:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-05-31T22:18:46,180 109 | for (unsigned int i = 0; i < comp_num; i++) { 2025-05-31T22:18:46,181 | ^ 2025-05-31T22:18:46,183 co2mco.c: In function ‘co2unitllmco’: 2025-05-31T22:18:46,184 co2mco.c:191:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-05-31T22:18:46,185 191 | for (unsigned int i = 0; i < bin_sz; i++) { 2025-05-31T22:18:46,186 | ^ 2025-05-31T22:18:46,887 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c command_composite.c -o build/temp.linux-armv7l-cpython-311/command_composite.o -fopenmp 2025-05-31T22:18:47,274 command_composite.c: In function ‘get_species_abundance’: 2025-05-31T22:18:47,275 command_composite.c:32:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2025-05-31T22:18:47,276 32 | if (ref_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, ref_dstat_fpath); 2025-05-31T22:18:47,277 | ^~ 2025-05-31T22:18:47,277 command_composite.c:34:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2025-05-31T22:18:47,278 34 | if (qry_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, qry_dstat_fpath); 2025-05-31T22:18:47,278 | ^~ 2025-05-31T22:18:47,279 command_composite.c:64:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T22:18:47,279 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2025-05-31T22:18:47,280 | ^ 2025-05-31T22:18:47,281 command_composite.c:64:31: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T22:18:47,281 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2025-05-31T22:18:47,282 | ^~~~~~~~~~ 2025-05-31T22:18:47,282 command_composite.c:64:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-05-31T22:18:47,283 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2025-05-31T22:18:47,283 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:47,284 command_composite.c:70:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T22:18:47,284 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2025-05-31T22:18:47,285 | ^ 2025-05-31T22:18:47,286 command_composite.c:70:31: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T22:18:47,286 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2025-05-31T22:18:47,287 | ^~~~~~~~~~ 2025-05-31T22:18:47,287 command_composite.c:70:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-05-31T22:18:47,288 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2025-05-31T22:18:47,289 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:47,289 command_composite.c:76:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T22:18:47,290 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2025-05-31T22:18:47,291 | ^ 2025-05-31T22:18:47,291 command_composite.c:76:31: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T22:18:47,292 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2025-05-31T22:18:47,293 | ^~~~~~~~~~ 2025-05-31T22:18:47,293 command_composite.c:76:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-05-31T22:18:47,294 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2025-05-31T22:18:47,294 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:47,295 command_composite.c:82:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T22:18:47,296 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2025-05-31T22:18:47,296 | ^ 2025-05-31T22:18:47,297 command_composite.c:82:31: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T22:18:47,298 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2025-05-31T22:18:47,298 | ^~~~~~~~~~ 2025-05-31T22:18:47,299 command_composite.c:82:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2025-05-31T22:18:47,299 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2025-05-31T22:18:47,300 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:47,300 command_composite.c:88:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T22:18:47,301 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2025-05-31T22:18:47,301 | ^ 2025-05-31T22:18:47,302 command_composite.c:88:31: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T22:18:47,302 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2025-05-31T22:18:47,303 | ^~~~~~~~~~~~ 2025-05-31T22:18:47,303 command_composite.c:88:13: note: ‘sprintf’ output 6 or more bytes (assuming 271) into a destination of size 256 2025-05-31T22:18:47,303 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2025-05-31T22:18:47,304 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:47,539 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c command_dist.c -o build/temp.linux-armv7l-cpython-311/command_dist.o -fopenmp 2025-05-31T22:18:47,794 command_dist.c: In function ‘mco_cbd_co_dist’: 2025-05-31T22:18:47,796 command_dist.c:677:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-05-31T22:18:47,796 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-05-31T22:18:47,797 | ~~^ 2025-05-31T22:18:47,797 | | 2025-05-31T22:18:47,798 | long unsigned int 2025-05-31T22:18:47,799 | %u 2025-05-31T22:18:47,799 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-05-31T22:18:47,800 | ~~~~~~~ 2025-05-31T22:18:47,801 | | 2025-05-31T22:18:47,801 | size_t {aka unsigned int} 2025-05-31T22:18:47,802 command_dist.c:677:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-05-31T22:18:47,803 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-05-31T22:18:47,803 | ~~^ 2025-05-31T22:18:47,804 | | 2025-05-31T22:18:47,805 | long unsigned int 2025-05-31T22:18:47,805 | %u 2025-05-31T22:18:47,806 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-05-31T22:18:47,807 679 | maplength, (size_t) b * unitsz_distf_mapped); 2025-05-31T22:18:47,807 | ~~~~~~~~~ 2025-05-31T22:18:47,808 | | 2025-05-31T22:18:47,809 | size_t {aka unsigned int} 2025-05-31T22:18:47,809 command_dist.c:677:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-05-31T22:18:47,810 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-05-31T22:18:47,810 | ~~^ 2025-05-31T22:18:47,811 | | 2025-05-31T22:18:47,811 | long unsigned int 2025-05-31T22:18:47,812 | %u 2025-05-31T22:18:47,812 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-05-31T22:18:47,813 679 | maplength, (size_t) b * unitsz_distf_mapped); 2025-05-31T22:18:47,813 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:47,814 | | 2025-05-31T22:18:47,814 | unsigned int 2025-05-31T22:18:47,815 command_dist.c:715:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-05-31T22:18:47,815 715 | for (int n = 0; n < fco_pos[k + 1] - fco_pos[k]; n++) { 2025-05-31T22:18:47,816 | ^ 2025-05-31T22:18:47,817 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2025-05-31T22:18:47,819 command_dist.c:863:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-05-31T22:18:47,820 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-05-31T22:18:47,820 | ~~^ ~~~~~~~ 2025-05-31T22:18:47,821 | | | 2025-05-31T22:18:47,821 | long unsigned int size_t {aka unsigned int} 2025-05-31T22:18:47,822 | %u 2025-05-31T22:18:47,823 command_dist.c:863:93: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-05-31T22:18:47,823 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-05-31T22:18:47,824 | ~~^ 2025-05-31T22:18:47,824 | | 2025-05-31T22:18:47,825 | long unsigned int 2025-05-31T22:18:47,825 | %u 2025-05-31T22:18:47,826 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2025-05-31T22:18:47,827 | ~~~~~~~~~ 2025-05-31T22:18:47,827 | | 2025-05-31T22:18:47,828 | size_t {aka unsigned int} 2025-05-31T22:18:47,829 command_dist.c:863:98: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-05-31T22:18:47,829 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2025-05-31T22:18:47,830 | ~~^ 2025-05-31T22:18:47,830 | | 2025-05-31T22:18:47,831 | long unsigned int 2025-05-31T22:18:47,831 | %u 2025-05-31T22:18:47,832 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2025-05-31T22:18:47,832 865 | (size_t) b * unitsz_distf_mapped); 2025-05-31T22:18:47,833 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:47,833 | | 2025-05-31T22:18:47,834 | unsigned int 2025-05-31T22:18:47,834 command_dist.c:810:13: warning: unused variable ‘fco_pos’ [-Wunused-variable] 2025-05-31T22:18:47,835 810 | size_t *fco_pos = malloc(sizeof(size_t) * (co_dstat_readin.infile_num + 1)); 2025-05-31T22:18:47,835 | ^~~~~~~ 2025-05-31T22:18:47,836 command_dist.c:809:17: warning: unused variable ‘cbd_fcode_stat’ [-Wunused-variable] 2025-05-31T22:18:47,836 809 | struct stat cbd_fcode_stat; 2025-05-31T22:18:47,837 | ^~~~~~~~~~~~~~ 2025-05-31T22:18:47,838 command_dist.c:808:31: warning: unused variable ‘cbd_fcode_comp_index_fp’ [-Wunused-variable] 2025-05-31T22:18:47,838 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2025-05-31T22:18:47,839 | ^~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:47,840 command_dist.c:808:11: warning: unused variable ‘cbd_fcode_comp_fp’ [-Wunused-variable] 2025-05-31T22:18:47,840 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2025-05-31T22:18:47,841 | ^~~~~~~~~~~~~~~~~ 2025-05-31T22:18:47,842 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2025-05-31T22:18:47,844 command_dist.c:1018:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-05-31T22:18:47,844 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-05-31T22:18:47,845 | ~~^ 2025-05-31T22:18:47,845 | | 2025-05-31T22:18:47,846 | long unsigned int 2025-05-31T22:18:47,846 | %u 2025-05-31T22:18:47,846 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-05-31T22:18:47,847 | ~~~~~~~ 2025-05-31T22:18:47,848 | | 2025-05-31T22:18:47,848 | size_t {aka unsigned int} 2025-05-31T22:18:47,848 command_dist.c:1018:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-05-31T22:18:47,849 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-05-31T22:18:47,849 | ~~^ 2025-05-31T22:18:47,850 | | 2025-05-31T22:18:47,851 | long unsigned int 2025-05-31T22:18:47,851 | %u 2025-05-31T22:18:47,852 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-05-31T22:18:47,852 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2025-05-31T22:18:47,853 | ~~~~~~~~~ 2025-05-31T22:18:47,853 | | 2025-05-31T22:18:47,853 | size_t {aka unsigned int} 2025-05-31T22:18:47,854 command_dist.c:1018:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2025-05-31T22:18:47,854 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2025-05-31T22:18:47,855 | ~~^ 2025-05-31T22:18:47,855 | | 2025-05-31T22:18:47,856 | long unsigned int 2025-05-31T22:18:47,856 | %u 2025-05-31T22:18:47,857 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2025-05-31T22:18:47,858 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2025-05-31T22:18:47,858 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:47,859 | | 2025-05-31T22:18:47,860 | unsigned int 2025-05-31T22:18:47,860 command_dist.c:1034:27: warning: comparison of integer expressions of different signedness: ‘__off_t’ {aka ‘long int’} and ‘unsigned int’ [-Wsign-compare] 2025-05-31T22:18:47,861 1034 | if (s.st_size > sizeof(gidobj_t) * MCOMM_SZ) mco_mem = (gidobj_t *) realloc(mco_mem, s.st_size); 2025-05-31T22:18:47,862 | ^ 2025-05-31T22:18:47,862 command_dist.c: In function ‘mco_co_dist_core’: 2025-05-31T22:18:47,863 command_dist.c:1116:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘gidobj_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-05-31T22:18:47,864 1116 | for (int k = 1; k < unit_arrmco[ind][0] + 1; k++) { 2025-05-31T22:18:47,864 | ^ 2025-05-31T22:18:47,870 command_dist.c: In function ‘koc_dist_print_nobin’: 2025-05-31T22:18:47,871 command_dist.c:1239:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-05-31T22:18:47,872 1239 | for (int rid = 0; rid < ref_num; rid++) 2025-05-31T22:18:47,872 | ^ 2025-05-31T22:18:47,874 command_dist.c:1245:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-05-31T22:18:47,874 1245 | for (int rid = 0; rid < ref_num; rid++) { 2025-05-31T22:18:47,875 | ^ 2025-05-31T22:18:47,881 command_dist.c: In function ‘dist_print_nobin’: 2025-05-31T22:18:47,882 command_dist.c:1335:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-05-31T22:18:47,883 1335 | if ((N_max > NREF) || (N_max > ref_num)) { 2025-05-31T22:18:47,883 | ^ 2025-05-31T22:18:47,886 command_dist.c:1356:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-05-31T22:18:47,886 1356 | for (int rid = 0; rid < ref_num; rid++) { 2025-05-31T22:18:47,887 | ^ 2025-05-31T22:18:47,889 command_dist.c:1382:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-05-31T22:18:47,889 1382 | for (int rid = 0; rid < ref_num; rid++) 2025-05-31T22:18:47,890 | ^ 2025-05-31T22:18:48,250 command_dist.c: In function ‘run_stageI._omp_fn.1’: 2025-05-31T22:18:48,251 command_dist.c:403:21: warning: ‘com_abund_fp’ may be used uninitialized [-Wmaybe-uninitialized] 2025-05-31T22:18:48,251 403 | fwrite(tmp_mem, sizeof(unsigned short) * tmpkmerct, 1, com_abund_fp); 2025-05-31T22:18:48,252 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:48,252 command_dist.c:375:40: note: ‘com_abund_fp’ was declared here 2025-05-31T22:18:48,253 375 | FILE *com_cofp, *indexfp, *com_abund_fp; 2025-05-31T22:18:48,253 | ^~~~~~~~~~~~ 2025-05-31T22:18:49,094 command_dist.c: In function ‘get_dim_shuffle’: 2025-05-31T22:18:49,094 command_dist.c:267:36: warning: ‘%s’ directive writing up to 264 bytes into a region of size 256 [-Wformat-overflow=] 2025-05-31T22:18:49,095 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2025-05-31T22:18:49,096 | ^~ ~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:49,096 command_dist.c:267:9: note: ‘sprintf’ output between 6 and 270 bytes into a destination of size 256 2025-05-31T22:18:49,097 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2025-05-31T22:18:49,098 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:50,001 command_dist.c: In function ‘mco_cbd_co_dist’: 2025-05-31T22:18:50,002 command_dist.c:596:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T22:18:50,003 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-05-31T22:18:50,003 | ^~ ~~~~~~~~~ 2025-05-31T22:18:50,004 command_dist.c:596:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-05-31T22:18:50,005 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-05-31T22:18:50,005 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:50,006 command_dist.c:625:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-05-31T22:18:50,007 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-05-31T22:18:50,007 | ^~~~~~~~~~~~~~~ 2025-05-31T22:18:50,008 command_dist.c:625:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-05-31T22:18:50,008 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-05-31T22:18:50,009 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:50,009 command_dist.c:681:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-05-31T22:18:50,010 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-05-31T22:18:50,010 | ^~~~~~~~~~~ 2025-05-31T22:18:50,011 command_dist.c:681:38: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T22:18:50,012 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-05-31T22:18:50,013 | ^~~~~~~~~~~~~~~~~ 2025-05-31T22:18:50,013 command_dist.c:681:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2025-05-31T22:18:50,014 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-05-31T22:18:50,014 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:50,015 command_dist.c:682:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-05-31T22:18:50,015 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-05-31T22:18:50,016 | ^~~~~ 2025-05-31T22:18:50,016 command_dist.c:682:32: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T22:18:50,017 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-05-31T22:18:50,017 | ^~~~~~~~~~~ 2025-05-31T22:18:50,018 command_dist.c:682:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-05-31T22:18:50,018 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-05-31T22:18:50,019 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:50,255 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2025-05-31T22:18:50,256 command_dist.c:763:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T22:18:50,256 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-05-31T22:18:50,257 | ^~ ~~~~~~~~~ 2025-05-31T22:18:50,258 command_dist.c:763:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-05-31T22:18:50,258 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-05-31T22:18:50,259 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:50,259 command_dist.c:790:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-05-31T22:18:50,260 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-05-31T22:18:50,261 | ^~~~~~~~~~~~~~~ 2025-05-31T22:18:50,261 command_dist.c:790:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-05-31T22:18:50,262 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-05-31T22:18:50,263 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:50,263 command_dist.c:823:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-05-31T22:18:50,264 823 | sprintf(distf, "%s/distance.out", distout_dir); 2025-05-31T22:18:50,264 | ^~~~~~~~~~~~~ 2025-05-31T22:18:50,265 command_dist.c:823:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-05-31T22:18:50,265 823 | sprintf(distf, "%s/distance.out", distout_dir); 2025-05-31T22:18:50,266 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:50,266 command_dist.c:849:39: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T22:18:50,267 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-05-31T22:18:50,268 | ^ 2025-05-31T22:18:50,268 command_dist.c:849:33: note: directive argument in the range [0, 536870912] 2025-05-31T22:18:50,269 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-05-31T22:18:50,270 | ^~~~~~~~~~ 2025-05-31T22:18:50,271 command_dist.c:849:8: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2025-05-31T22:18:50,271 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2025-05-31T22:18:50,272 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:50,272 command_dist.c:851:34: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T22:18:50,273 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-05-31T22:18:50,274 | ^ 2025-05-31T22:18:50,274 command_dist.c:851:28: note: directive argument in the range [0, 536870912] 2025-05-31T22:18:50,274 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-05-31T22:18:50,275 | ^~~~~~~~~~ 2025-05-31T22:18:50,275 command_dist.c:851:9: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2025-05-31T22:18:50,276 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2025-05-31T22:18:50,277 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:50,534 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2025-05-31T22:18:50,535 command_dist.c:927:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T22:18:50,536 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-05-31T22:18:50,536 | ^~ ~~~~~~~~~ 2025-05-31T22:18:50,537 command_dist.c:927:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2025-05-31T22:18:50,538 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2025-05-31T22:18:50,538 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:50,539 command_dist.c:956:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-05-31T22:18:50,540 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-05-31T22:18:50,540 | ^~~~~~~~~~~~~~~ 2025-05-31T22:18:50,541 command_dist.c:956:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2025-05-31T22:18:50,541 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2025-05-31T22:18:50,542 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:50,543 command_dist.c:990:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-05-31T22:18:50,543 990 | sprintf(distf, "%s/distance.out", distout_dir); 2025-05-31T22:18:50,544 | ^~~~~~~~~~~~~ 2025-05-31T22:18:50,544 command_dist.c:990:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-05-31T22:18:50,545 990 | sprintf(distf, "%s/distance.out", distout_dir); 2025-05-31T22:18:50,545 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:50,546 command_dist.c:1022:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-05-31T22:18:50,546 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-05-31T22:18:50,547 | ^~~~~~~~~~~ 2025-05-31T22:18:50,547 command_dist.c:1022:38: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T22:18:50,548 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-05-31T22:18:50,549 | ^~~~~~~~~~~~~~~~~ 2025-05-31T22:18:50,549 command_dist.c:1022:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2025-05-31T22:18:50,550 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2025-05-31T22:18:50,551 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:50,551 command_dist.c:1023:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2025-05-31T22:18:50,552 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-05-31T22:18:50,552 | ^~~~~ 2025-05-31T22:18:50,553 command_dist.c:1023:32: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T22:18:50,553 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-05-31T22:18:50,554 | ^~~~~~~~~~~ 2025-05-31T22:18:50,555 command_dist.c:1023:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-05-31T22:18:50,555 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2025-05-31T22:18:50,556 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:50,824 command_dist.c: In function ‘combine_queries’: 2025-05-31T22:18:50,825 command_dist.c:1492:41: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-05-31T22:18:50,827 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2025-05-31T22:18:50,828 | ^ 2025-05-31T22:18:50,869 command_dist.c:1492:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-05-31T22:18:50,870 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2025-05-31T22:18:50,871 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:50,872 command_dist.c:1499:40: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-05-31T22:18:50,873 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2025-05-31T22:18:50,875 | ^ 2025-05-31T22:18:50,920 command_dist.c:1499:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-05-31T22:18:50,921 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2025-05-31T22:18:50,921 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:50,922 command_dist.c:1603:32: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T22:18:50,923 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2025-05-31T22:18:50,924 | ^~ ~~~~~~~~ 2025-05-31T22:18:50,926 command_dist.c:1603:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2025-05-31T22:18:50,927 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2025-05-31T22:18:50,970 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:51,427 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c command_dist_wrapper.c -o build/temp.linux-armv7l-cpython-311/command_dist_wrapper.o -fopenmp 2025-05-31T22:18:51,611 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c command_set.c -o build/temp.linux-armv7l-cpython-311/command_set.o -fopenmp 2025-05-31T22:18:51,795 command_set.c: In function ‘sketch_operate’: 2025-05-31T22:18:51,795 command_set.c:178:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-05-31T22:18:51,797 178 | for(int n = 0; n < fco_pos[i+1] - fco_pos[i]; n++){ 2025-05-31T22:18:51,797 | ^ 2025-05-31T22:18:51,809 command_set.c: In function ‘combin_subset_pans’: 2025-05-31T22:18:51,809 command_set.c:457:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2025-05-31T22:18:51,810 457 | free(co_dstat_fpath); 2025-05-31T22:18:51,810 | ^~~~~~~~~~~~~~ 2025-05-31T22:18:51,811 In file included from kssdheaders/global_basic.h:159, 2025-05-31T22:18:51,811 from command_set.c:15: 2025-05-31T22:18:51,812 /usr/include/stdlib.h:568:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2025-05-31T22:18:51,812 568 | extern void free (void *__ptr) __THROW; 2025-05-31T22:18:51,813 | ~~~~~~^~~~~ 2025-05-31T22:18:51,816 command_set.c: In function ‘grouping_genomes’: 2025-05-31T22:18:51,817 command_set.c:562:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2025-05-31T22:18:51,817 562 | free(co_dstat_fpath); 2025-05-31T22:18:51,818 | ^~~~~~~~~~~~~~ 2025-05-31T22:18:51,818 /usr/include/stdlib.h:568:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2025-05-31T22:18:51,819 568 | extern void free (void *__ptr) __THROW; 2025-05-31T22:18:51,819 | ~~~~~~^~~~~ 2025-05-31T22:18:51,984 command_set.c: In function ‘sketch_union’: 2025-05-31T22:18:51,985 command_set.c:71:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-05-31T22:18:51,985 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-05-31T22:18:51,986 | ^ 2025-05-31T22:18:51,987 command_set.c:71:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-05-31T22:18:51,988 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-05-31T22:18:51,988 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:51,989 command_set.c:82:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T22:18:51,990 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-05-31T22:18:51,990 | ^~ ~~~~~~~~~~~ 2025-05-31T22:18:51,991 command_set.c:82:25: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T22:18:51,992 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-05-31T22:18:51,992 | ^~~~~~~~~~ 2025-05-31T22:18:51,993 command_set.c:82:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-05-31T22:18:51,993 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-05-31T22:18:51,994 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:51,995 command_set.c:92:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T22:18:51,996 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2025-05-31T22:18:51,996 | ^~ ~~~~~~~~~~ 2025-05-31T22:18:51,997 command_set.c:92:25: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T22:18:51,997 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2025-05-31T22:18:51,998 | ^~~~~~~~~~ 2025-05-31T22:18:51,999 command_set.c:92:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-05-31T22:18:51,999 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2025-05-31T22:18:52,000 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:52,117 command_set.c: In function ‘sketch_operate’: 2025-05-31T22:18:52,117 command_set.c:153:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T22:18:52,118 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2025-05-31T22:18:52,118 | ^~ ~~~~~~~~~~ 2025-05-31T22:18:52,119 command_set.c:153:25: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T22:18:52,119 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2025-05-31T22:18:52,120 | ^~~~~~~~~~ 2025-05-31T22:18:52,120 command_set.c:153:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2025-05-31T22:18:52,121 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2025-05-31T22:18:52,121 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:52,122 command_set.c:155:33: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T22:18:52,122 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2025-05-31T22:18:52,123 | ^~ ~~~~~~~~~~~~~~~ 2025-05-31T22:18:52,124 command_set.c:155:29: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T22:18:52,124 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2025-05-31T22:18:52,125 | ^~~~~~~~~~ 2025-05-31T22:18:52,126 command_set.c:155:13: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2025-05-31T22:18:52,126 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2025-05-31T22:18:52,127 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:52,128 command_set.c:165:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T22:18:52,129 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2025-05-31T22:18:52,129 | ^~ ~~~~~~~~~~~ 2025-05-31T22:18:52,130 command_set.c:165:25: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T22:18:52,131 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2025-05-31T22:18:52,131 | ^~~~~~~~~~~~~~~~ 2025-05-31T22:18:52,132 command_set.c:165:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-05-31T22:18:52,133 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2025-05-31T22:18:52,134 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:52,135 command_set.c:169:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T22:18:52,136 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2025-05-31T22:18:52,342 | ^~ ~~~~~~~~~~~ 2025-05-31T22:18:52,343 command_set.c:169:25: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T22:18:52,343 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2025-05-31T22:18:52,344 | ^~~~~~~~~~ 2025-05-31T22:18:52,345 command_set.c:169:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-05-31T22:18:52,345 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2025-05-31T22:18:52,346 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:52,346 command_set.c:174:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T22:18:52,347 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2025-05-31T22:18:52,347 | ^~ ~~~~~~~~~~~ 2025-05-31T22:18:52,348 command_set.c:174:25: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T22:18:52,348 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2025-05-31T22:18:52,349 | ^~~~~~~~~~ 2025-05-31T22:18:52,349 command_set.c:174:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-05-31T22:18:52,350 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2025-05-31T22:18:52,350 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:52,351 command_set.c:187:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T22:18:52,351 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2025-05-31T22:18:52,352 | ^~ ~~~~~~~~~~~ 2025-05-31T22:18:52,353 command_set.c:187:25: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T22:18:52,353 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2025-05-31T22:18:52,354 | ^~~~~~~~~~~~~~~~ 2025-05-31T22:18:52,354 command_set.c:187:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-05-31T22:18:52,355 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2025-05-31T22:18:52,355 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:52,356 command_set.c:192:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-05-31T22:18:52,357 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-05-31T22:18:52,358 | ^ 2025-05-31T22:18:52,359 command_set.c:192:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-05-31T22:18:52,360 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-05-31T22:18:52,361 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:52,362 command_set.c: In function ‘uniq_sketch_union’: 2025-05-31T22:18:52,363 command_set.c:219:39: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-05-31T22:18:52,364 219 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2025-05-31T22:18:52,366 | ^ 2025-05-31T22:18:52,367 command_set.c:219:17: note: ‘sprintf’ output between 11 and 21 bytes into a destination of size 20 2025-05-31T22:18:52,368 219 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2025-05-31T22:18:52,370 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:52,371 command_set.c:234:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-05-31T22:18:52,373 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-05-31T22:18:52,374 | ^ 2025-05-31T22:18:52,376 command_set.c:234:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-05-31T22:18:52,378 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2025-05-31T22:18:52,379 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:52,380 command_set.c:247:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T22:18:52,380 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-05-31T22:18:52,381 | ^~ ~~~~~~~~~~~ 2025-05-31T22:18:52,381 command_set.c:247:25: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T22:18:52,382 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-05-31T22:18:52,382 | ^~~~~~~~~~ 2025-05-31T22:18:52,383 command_set.c:247:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-05-31T22:18:52,383 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2025-05-31T22:18:52,384 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:52,384 command_set.c:259:29: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T22:18:52,385 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2025-05-31T22:18:52,386 | ^~ ~~~~~~~~~~~~~~~ 2025-05-31T22:18:52,386 command_set.c:259:25: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T22:18:52,387 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2025-05-31T22:18:52,387 | ^~~~~~~~~~ 2025-05-31T22:18:52,388 command_set.c:259:9: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2025-05-31T22:18:52,389 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2025-05-31T22:18:52,389 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:52,443 command_set.c: In function ‘combin_pans’: 2025-05-31T22:18:52,444 command_set.c:297:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T22:18:52,445 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-05-31T22:18:52,445 | ^~ ~~~~~~~~~~~ 2025-05-31T22:18:52,446 command_set.c:297:25: note: directive argument in the range [0, 1073741823] 2025-05-31T22:18:52,447 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-05-31T22:18:52,447 | ^~~~~~~~~~ 2025-05-31T22:18:52,448 command_set.c:297:9: note: ‘sprintf’ output between 10 and 274 bytes into a destination of size 256 2025-05-31T22:18:52,449 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-05-31T22:18:52,449 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:52,450 command_set.c:300:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T22:18:52,451 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-05-31T22:18:52,451 | ^~ ~~~~~~~~~~ 2025-05-31T22:18:52,452 command_set.c:300:25: note: directive argument in the range [0, 1073741823] 2025-05-31T22:18:52,452 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-05-31T22:18:52,453 | ^~~~~~~~~~ 2025-05-31T22:18:52,454 command_set.c:300:9: note: ‘sprintf’ output between 16 and 280 bytes into a destination of size 256 2025-05-31T22:18:52,454 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-05-31T22:18:52,455 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:52,456 command_set.c:342:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-05-31T22:18:52,456 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-05-31T22:18:52,457 | ^ 2025-05-31T22:18:52,458 command_set.c:342:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-05-31T22:18:52,458 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-05-31T22:18:52,459 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:52,661 command_set.c: In function ‘combin_subset_pans’: 2025-05-31T22:18:52,662 command_set.c:469:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T22:18:52,662 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-05-31T22:18:52,663 | ^~ ~~~~~~~~~~~ 2025-05-31T22:18:52,663 command_set.c:469:25: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T22:18:52,664 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-05-31T22:18:52,664 | ^~~~~~~~~~ 2025-05-31T22:18:52,665 command_set.c:469:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-05-31T22:18:52,665 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-05-31T22:18:52,665 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:52,666 command_set.c:475:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T22:18:52,666 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-05-31T22:18:52,667 | ^~ ~~~~~~~~~~ 2025-05-31T22:18:52,667 command_set.c:475:25: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T22:18:52,668 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-05-31T22:18:52,669 | ^~~~~~~~~~ 2025-05-31T22:18:52,669 command_set.c:475:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-05-31T22:18:52,670 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-05-31T22:18:52,671 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:52,671 command_set.c:481:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T22:18:52,672 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-05-31T22:18:52,673 | ^~ ~~~~~~~~~~~ 2025-05-31T22:18:52,674 command_set.c:481:25: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T22:18:52,674 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-05-31T22:18:52,675 | ^~~~~~~~~~ 2025-05-31T22:18:52,675 command_set.c:481:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-05-31T22:18:52,676 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-05-31T22:18:52,677 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:52,677 command_set.c:512:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T22:18:52,678 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-05-31T22:18:52,679 | ^~ ~~~~~~~~~~ 2025-05-31T22:18:52,679 command_set.c:512:25: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T22:18:52,680 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-05-31T22:18:52,681 | ^~~~~~~~~~ 2025-05-31T22:18:52,682 command_set.c:512:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-05-31T22:18:52,682 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-05-31T22:18:52,683 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:52,683 command_set.c:523:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-05-31T22:18:52,684 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-05-31T22:18:52,684 | ^ 2025-05-31T22:18:52,685 command_set.c:523:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-05-31T22:18:52,685 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-05-31T22:18:52,686 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:52,905 command_set.c: In function ‘grouping_genomes’: 2025-05-31T22:18:52,906 command_set.c:574:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T22:18:52,907 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-05-31T22:18:52,907 | ^~ ~~~~~~~~~~~ 2025-05-31T22:18:52,908 command_set.c:574:25: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T22:18:52,908 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-05-31T22:18:52,909 | ^~~~~~~~~~ 2025-05-31T22:18:52,909 command_set.c:574:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-05-31T22:18:52,910 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2025-05-31T22:18:52,910 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:52,911 command_set.c:580:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T22:18:52,912 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-05-31T22:18:52,912 | ^~ ~~~~~~~~~~ 2025-05-31T22:18:52,913 command_set.c:580:25: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T22:18:52,914 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-05-31T22:18:52,914 | ^~~~~~~~~~ 2025-05-31T22:18:52,915 command_set.c:580:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-05-31T22:18:52,916 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2025-05-31T22:18:52,916 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:52,917 command_set.c:612:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T22:18:52,917 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-05-31T22:18:52,918 | ^~ ~~~~~~~~~~~ 2025-05-31T22:18:52,919 command_set.c:612:25: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T22:18:52,919 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-05-31T22:18:52,920 | ^~~~~~~~~~ 2025-05-31T22:18:52,921 command_set.c:612:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2025-05-31T22:18:52,921 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2025-05-31T22:18:52,922 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:52,923 command_set.c:634:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2025-05-31T22:18:52,924 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-05-31T22:18:52,925 | ^~ ~~~~~~~~~~ 2025-05-31T22:18:52,925 command_set.c:634:25: note: directive argument in the range [-2147483644, 2147483646] 2025-05-31T22:18:52,926 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-05-31T22:18:52,926 | ^~~~~~~~~~ 2025-05-31T22:18:52,927 command_set.c:634:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2025-05-31T22:18:52,927 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2025-05-31T22:18:52,927 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:52,928 command_set.c:645:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2025-05-31T22:18:52,928 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-05-31T22:18:52,928 | ^ 2025-05-31T22:18:52,929 command_set.c:645:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2025-05-31T22:18:52,930 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2025-05-31T22:18:52,930 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-05-31T22:18:53,252 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c command_shuffle.c -o build/temp.linux-armv7l-cpython-311/command_shuffle.o -fopenmp 2025-05-31T22:18:53,805 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c global_basic.c -o build/temp.linux-armv7l-cpython-311/global_basic.o -fopenmp 2025-05-31T22:18:54,003 global_basic.c: In function ‘organize_infile_list’: 2025-05-31T22:18:54,004 global_basic.c:195:20: warning: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 2025-05-31T22:18:54,005 195 | while (isspace(*buf)) buf++; 2025-05-31T22:18:54,005 | ^~~~~~~ 2025-05-31T22:18:54,006 global_basic.c:35:1: note: include ‘’ or provide a declaration of ‘isspace’ 2025-05-31T22:18:54,007 34 | #include 2025-05-31T22:18:54,007 +++ |+#include 2025-05-31T22:18:54,008 35 | 2025-05-31T22:18:54,009 global_basic.c:201:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-05-31T22:18:54,009 201 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2025-05-31T22:18:54,010 | ~~^ 2025-05-31T22:18:54,011 | | 2025-05-31T22:18:54,011 | long unsigned int 2025-05-31T22:18:54,012 | %u 2025-05-31T22:18:54,013 202 | list_path, file_num, buf, strlen(buf), PATHLEN); 2025-05-31T22:18:54,013 | ~~~~~~~~~~~ 2025-05-31T22:18:54,014 | | 2025-05-31T22:18:54,015 | size_t {aka unsigned int} 2025-05-31T22:18:54,015 global_basic.c:233:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-05-31T22:18:54,016 233 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2025-05-31T22:18:54,017 | ~~^ 2025-05-31T22:18:54,018 | | 2025-05-31T22:18:54,019 | long unsigned int 2025-05-31T22:18:54,020 | %u 2025-05-31T22:18:54,020 234 | list_path, file_num, buf, strlen(buf), PATHLEN); 2025-05-31T22:18:54,021 | ~~~~~~~~~~~ 2025-05-31T22:18:54,021 | | 2025-05-31T22:18:54,022 | size_t {aka unsigned int} 2025-05-31T22:18:54,773 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c iseq2comem.c -o build/temp.linux-armv7l-cpython-311/iseq2comem.o -fopenmp 2025-05-31T22:18:54,957 iseq2comem.c: In function ‘reads2mco’: 2025-05-31T22:18:54,958 iseq2comem.c:156:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-05-31T22:18:54,959 156 | if (base > TL) { 2025-05-31T22:18:54,959 | ^ 2025-05-31T22:18:54,960 iseq2comem.c:160:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-05-31T22:18:54,961 160 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-05-31T22:18:54,961 | ^~ 2025-05-31T22:18:54,962 iseq2comem.c:160:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-05-31T22:18:54,962 160 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-05-31T22:18:54,963 | ^ 2025-05-31T22:18:54,965 iseq2comem.c: In function ‘fasta2co’: 2025-05-31T22:18:54,966 iseq2comem.c:254:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-05-31T22:18:54,967 254 | if (base > TL) { 2025-05-31T22:18:54,968 | ^ 2025-05-31T22:18:54,968 iseq2comem.c:258:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-05-31T22:18:54,969 258 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-05-31T22:18:54,970 | ^~ 2025-05-31T22:18:54,970 iseq2comem.c:258:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-05-31T22:18:54,971 258 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-05-31T22:18:54,971 | ^ 2025-05-31T22:18:54,972 iseq2comem.c: In function ‘fastq2co’: 2025-05-31T22:18:54,973 iseq2comem.c:288:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare] 2025-05-31T22:18:54,973 288 | if (M >= CT_MAX) fprintf(stderr, "fastq2co(): Occurence num should smaller than %d", (int) CT_MAX); 2025-05-31T22:18:54,974 | ^~ 2025-05-31T22:18:54,977 iseq2comem.c:338:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-05-31T22:18:54,978 338 | if (base > TL) { 2025-05-31T22:18:54,979 | ^ 2025-05-31T22:18:54,979 iseq2comem.c:342:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-05-31T22:18:54,980 342 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-05-31T22:18:54,980 | ^~ 2025-05-31T22:18:54,981 iseq2comem.c:342:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-05-31T22:18:54,981 342 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-05-31T22:18:54,982 | ^ 2025-05-31T22:18:54,983 iseq2comem.c:361:44: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare] 2025-05-31T22:18:54,984 361 | if (!((co[n] & CT_MAX) < M)) co[n] |= CT_MAX; 2025-05-31T22:18:54,984 | ^ 2025-05-31T22:18:54,987 iseq2comem.c: In function ‘fastq2koc’: 2025-05-31T22:18:54,987 iseq2comem.c:427:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-05-31T22:18:54,988 427 | if (base > TL) { 2025-05-31T22:18:54,988 | ^ 2025-05-31T22:18:54,989 iseq2comem.c:431:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-05-31T22:18:54,990 431 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-05-31T22:18:54,990 | ^~ 2025-05-31T22:18:54,991 iseq2comem.c:431:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-05-31T22:18:54,992 431 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-05-31T22:18:54,992 | ^ 2025-05-31T22:18:54,999 iseq2comem.c: In function ‘mt_shortreads2koc’: 2025-05-31T22:18:55,001 iseq2comem.c:607:34: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-05-31T22:18:55,001 607 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-05-31T22:18:55,002 | ^~ 2025-05-31T22:18:55,003 iseq2comem.c:607:58: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-05-31T22:18:55,003 607 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2025-05-31T22:18:55,004 | ^ 2025-05-31T22:18:56,386 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c mman.c -o build/temp.linux-armv7l-cpython-311/mman.o -fopenmp 2025-05-31T22:18:56,454 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c mytime.c -o build/temp.linux-armv7l-cpython-311/mytime.o -fopenmp 2025-05-31T22:18:56,590 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.11 -c pykssd.c -o build/temp.linux-armv7l-cpython-311/pykssd.o -fopenmp 2025-05-31T22:18:56,997 pykssd.c: In function ‘py_dist_dispatch’: 2025-05-31T22:18:56,998 pykssd.c:339:13: warning: unused variable ‘state1’ [-Wunused-variable] 2025-05-31T22:18:56,998 339 | int state1 = dist_dispatch(&dist_opt_val1); 2025-05-31T22:18:56,999 | ^~~~~~ 2025-05-31T22:18:56,999 pykssd.c:404:13: warning: unused variable ‘state2’ [-Wunused-variable] 2025-05-31T22:18:57,000 404 | int state2 = dist_dispatch(&dist_opt_val2); 2025-05-31T22:18:57,000 | ^~~~~~ 2025-05-31T22:18:57,002 pykssd.c:538:13: warning: unused variable ‘state4’ [-Wunused-variable] 2025-05-31T22:18:57,003 538 | int state4 = dist_dispatch(&dist_opt_val4); 2025-05-31T22:18:57,004 | ^~~~~~ 2025-05-31T22:18:57,662 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/co2mco.o build/temp.linux-armv7l-cpython-311/command_composite.o build/temp.linux-armv7l-cpython-311/command_dist.o build/temp.linux-armv7l-cpython-311/command_dist_wrapper.o build/temp.linux-armv7l-cpython-311/command_set.o build/temp.linux-armv7l-cpython-311/command_shuffle.o build/temp.linux-armv7l-cpython-311/global_basic.o build/temp.linux-armv7l-cpython-311/iseq2comem.o build/temp.linux-armv7l-cpython-311/mman.o build/temp.linux-armv7l-cpython-311/mytime.o build/temp.linux-armv7l-cpython-311/pykssd.o -L/usr/lib/arm-linux-gnueabihf -lz -o build/lib.linux-armv7l-cpython-311/kssdtool.cpython-311-arm-linux-gnueabihf.so -fopenmp 2025-05-31T22:18:57,867 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-05-31T22:18:57,867 !! 2025-05-31T22:18:57,869 ******************************************************************************** 2025-05-31T22:18:57,869 Please avoid running ``setup.py`` directly. 2025-05-31T22:18:57,870 Instead, use pypa/build, pypa/installer or other 2025-05-31T22:18:57,870 standards-based tools. 2025-05-31T22:18:57,872 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-05-31T22:18:57,872 or your builds will no longer be supported. 2025-05-31T22:18:57,873 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-05-31T22:18:57,874 ******************************************************************************** 2025-05-31T22:18:57,875 !! 2025-05-31T22:18:57,876 self.initialize_options() 2025-05-31T22:18:57,896 installing to build/bdist.linux-armv7l/wheel 2025-05-31T22:18:57,896 running install 2025-05-31T22:18:57,921 running install_lib 2025-05-31T22:18:57,952 creating build/bdist.linux-armv7l/wheel 2025-05-31T22:18:57,954 copying build/lib.linux-armv7l-cpython-311/kssdtool.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/. 2025-05-31T22:18:57,963 copying build/lib.linux-armv7l-cpython-311/kssdutils.py -> build/bdist.linux-armv7l/wheel/. 2025-05-31T22:18:57,965 running install_egg_info 2025-05-31T22:18:58,015 Copying kssdutils.egg-info to build/bdist.linux-armv7l/wheel/./kssdutils-1.1.3-py3.11.egg-info 2025-05-31T22:18:58,038 running install_scripts 2025-05-31T22:18:58,101 creating build/bdist.linux-armv7l/wheel/kssdutils-1.1.3.dist-info/WHEEL 2025-05-31T22:18:58,104 creating '/tmp/pip-wheel-bavjdfpu/kssdutils-1.1.3-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-05-31T22:18:58,193 adding 'kssdtool.cpython-311-arm-linux-gnueabihf.so' 2025-05-31T22:18:58,198 adding 'kssdutils.py' 2025-05-31T22:18:58,200 adding 'kssdutils-1.1.3.dist-info/METADATA' 2025-05-31T22:18:58,201 adding 'kssdutils-1.1.3.dist-info/WHEEL' 2025-05-31T22:18:58,202 adding 'kssdutils-1.1.3.dist-info/dependency_links.txt' 2025-05-31T22:18:58,203 adding 'kssdutils-1.1.3.dist-info/top_level.txt' 2025-05-31T22:18:58,204 adding 'kssdutils-1.1.3.dist-info/RECORD' 2025-05-31T22:18:58,208 removing build/bdist.linux-armv7l/wheel 2025-05-31T22:18:58,346 Building wheel for kssdutils (setup.py): finished with status 'done' 2025-05-31T22:18:58,350 Created wheel for kssdutils: filename=kssdutils-1.1.3-cp311-cp311-linux_armv7l.whl size=181786 sha256=5584c66cba9b3b3dc5863d4eadba8674b765a709b4c7abc210ce12f9e49d68a3 2025-05-31T22:18:58,351 Stored in directory: /tmp/pip-ephem-wheel-cache-x7o7g7p8/wheels/86/c1/d4/fe9e00b318c8178f0f0459b915eca86590de145d118f9321cd 2025-05-31T22:18:58,363 Successfully built kssdutils 2025-05-31T22:18:58,375 Removed build tracker: '/tmp/pip-build-tracker-uu9u_btq'