2025-06-01T08:03:59,652 Created temporary directory: /tmp/pip-build-tracker-ct7_u1s8 2025-06-01T08:03:59,653 Initialized build tracking at /tmp/pip-build-tracker-ct7_u1s8 2025-06-01T08:03:59,654 Created build tracker: /tmp/pip-build-tracker-ct7_u1s8 2025-06-01T08:03:59,654 Entered build tracker: /tmp/pip-build-tracker-ct7_u1s8 2025-06-01T08:03:59,655 Created temporary directory: /tmp/pip-wheel-5coauoo4 2025-06-01T08:03:59,659 Created temporary directory: /tmp/pip-ephem-wheel-cache-d1wzokn5 2025-06-01T08:03:59,708 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-06-01T08:03:59,711 2 location(s) to search for versions of hypogenic: 2025-06-01T08:03:59,711 * https://pypi.org/simple/hypogenic/ 2025-06-01T08:03:59,711 * https://www.piwheels.org/simple/hypogenic/ 2025-06-01T08:03:59,711 Fetching project page and analyzing links: https://pypi.org/simple/hypogenic/ 2025-06-01T08:03:59,712 Getting page https://pypi.org/simple/hypogenic/ 2025-06-01T08:03:59,714 Found index url https://pypi.org/simple/ 2025-06-01T08:03:59,934 Fetched page https://pypi.org/simple/hypogenic/ as application/vnd.pypi.simple.v1+json 2025-06-01T08:03:59,937 Skipping link: No binaries permitted for hypogenic: https://files.pythonhosted.org/packages/21/da/8572dec0493164b4573f41bb1ace32647eebd404c4f02b7ffacd5836a33b/hypogenic-0.0.1-py2.py3-none-any.whl (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.9) 2025-06-01T08:03:59,938 Skipping link: No binaries permitted for hypogenic: https://files.pythonhosted.org/packages/f4/db/1769d8954270750cff6e07531c74415bf0d9db4d88c8d90ab2511f1e8da3/hypogenic-0.1.1-py3-none-any.whl (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.9) 2025-06-01T08:03:59,939 Found link https://files.pythonhosted.org/packages/17/b4/a65e31064d7f798aaddf13757e6853c22dacebb069c38c04d1eabf08702d/hypogenic-0.1.1.tar.gz (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.9), version: 0.1.1 2025-06-01T08:03:59,939 Skipping link: No binaries permitted for hypogenic: https://files.pythonhosted.org/packages/d3/be/269b7faadb4ab682ea292a0288ef2e027bdde5358bed6cce12803535b9f2/hypogenic-0.2.2-py3-none-any.whl (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.10) 2025-06-01T08:03:59,940 Found link https://files.pythonhosted.org/packages/d9/f8/119407a8c78591642b094d492e1b8183f85f0e82497da6ddd777498b174f/hypogenic-0.2.2.tar.gz (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.10), version: 0.2.2 2025-06-01T08:03:59,941 Skipping link: No binaries permitted for hypogenic: https://files.pythonhosted.org/packages/56/ad/ae6707840022069cb4cff0e1e3de35bdcc22691c54800979e1ba6bd0a972/hypogenic-0.3.1-py3-none-any.whl (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.10) 2025-06-01T08:03:59,942 Found link https://files.pythonhosted.org/packages/82/1c/735665540ffa59bbd99edeae2b6b217ce11d09c004cfb200a65424abf850/hypogenic-0.3.1.tar.gz (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.10), version: 0.3.1 2025-06-01T08:03:59,942 Skipping link: No binaries permitted for hypogenic: https://files.pythonhosted.org/packages/f0/5c/419a7009530c7a281cfc5a8e75cef9a9108bb4ab68fdcbbc77894c09f004/hypogenic-0.3.2-py3-none-any.whl (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.10) 2025-06-01T08:03:59,943 Found link https://files.pythonhosted.org/packages/ae/42/c0fcc75e33b49421edeebb8b6957bedbe021ed3a7d4106e6e2c6807429d3/hypogenic-0.3.2.tar.gz (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.10), version: 0.3.2 2025-06-01T08:03:59,944 Skipping link: No binaries permitted for hypogenic: https://files.pythonhosted.org/packages/5e/78/1b8ec74bc431e62173684ad36b3151ed334a5b47f0591a5ffa411cf35bcf/hypogenic-0.3.3-py3-none-any.whl (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.10) 2025-06-01T08:03:59,944 Found link https://files.pythonhosted.org/packages/48/80/85ff70458ed39bcdd8592f9dda389e9fc57ec58b127e1b7364a3314ad4b0/hypogenic-0.3.3.tar.gz (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.10), version: 0.3.3 2025-06-01T08:03:59,945 Skipping link: No binaries permitted for hypogenic: https://files.pythonhosted.org/packages/93/5d/47d1efc0bfee85da4c7e4b1300ece10cb416f24f6edc1e70eb0850b604fc/hypogenic-0.3.4-py3-none-any.whl (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.10) 2025-06-01T08:03:59,946 Found link https://files.pythonhosted.org/packages/69/9b/ecbaf2131d5ee385518fc1f2d826946a81d0a8a7d5207aa279c7c0a8b5da/hypogenic-0.3.4.tar.gz (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.10), version: 0.3.4 2025-06-01T08:03:59,946 Skipping link: No binaries permitted for hypogenic: https://files.pythonhosted.org/packages/91/00/a3d2b9d626832ad0b7b7807a6795877ab98875a36d27035a4759a84b248b/hypogenic-0.3.5-py3-none-any.whl (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.10) 2025-06-01T08:03:59,947 Found link https://files.pythonhosted.org/packages/b1/a3/9abb3170ccf2337f9e7485d11f6be66a7def96b0438a9dbfb398b82f3e86/hypogenic-0.3.5.tar.gz (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.10), version: 0.3.5 2025-06-01T08:03:59,948 Fetching project page and analyzing links: https://www.piwheels.org/simple/hypogenic/ 2025-06-01T08:03:59,948 Getting page https://www.piwheels.org/simple/hypogenic/ 2025-06-01T08:03:59,950 Found index url https://www.piwheels.org/simple/ 2025-06-01T08:04:00,136 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/hypogenic/ 2025-06-01T08:04:00,784 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/hypogenic/ 2025-06-01T08:04:01,981 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/hypogenic/ 2025-06-01T08:04:04,180 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/hypogenic/ 2025-06-01T08:04:08,375 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/hypogenic/ 2025-06-01T08:04:08,589 Could not fetch URL https://www.piwheels.org/simple/hypogenic/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/hypogenic/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping 2025-06-01T08:04:08,590 Skipping link: not a file: https://www.piwheels.org/simple/hypogenic/ 2025-06-01T08:04:08,591 Skipping link: not a file: https://pypi.org/simple/hypogenic/ 2025-06-01T08:04:08,609 Given no hashes to check 1 links for project 'hypogenic': discarding no candidates 2025-06-01T08:04:08,611 Collecting hypogenic==0.2.2 2025-06-01T08:04:08,613 Created temporary directory: /tmp/pip-unpack-r_mrg55k 2025-06-01T08:04:08,832 Downloading hypogenic-0.2.2.tar.gz (54 kB) 2025-06-01T08:04:09,006 Added hypogenic==0.2.2 from https://files.pythonhosted.org/packages/d9/f8/119407a8c78591642b094d492e1b8183f85f0e82497da6ddd777498b174f/hypogenic-0.2.2.tar.gz to build tracker '/tmp/pip-build-tracker-ct7_u1s8' 2025-06-01T08:04:09,009 Running setup.py (path:/tmp/pip-wheel-5coauoo4/hypogenic_9ccabf9758064d7c85ae52c28a10df4b/setup.py) egg_info for package hypogenic 2025-06-01T08:04:09,010 Created temporary directory: /tmp/pip-pip-egg-info-tqqk2dsw 2025-06-01T08:04:09,010 Preparing metadata (setup.py): started 2025-06-01T08:04:09,011 Running command python setup.py egg_info 2025-06-01T08:04:09,920 running egg_info 2025-06-01T08:04:09,947 creating /tmp/pip-pip-egg-info-tqqk2dsw/hypogenic.egg-info 2025-06-01T08:04:09,948 writing /tmp/pip-pip-egg-info-tqqk2dsw/hypogenic.egg-info/PKG-INFO 2025-06-01T08:04:09,952 writing dependency_links to /tmp/pip-pip-egg-info-tqqk2dsw/hypogenic.egg-info/dependency_links.txt 2025-06-01T08:04:09,953 writing entry points to /tmp/pip-pip-egg-info-tqqk2dsw/hypogenic.egg-info/entry_points.txt 2025-06-01T08:04:09,955 writing requirements to /tmp/pip-pip-egg-info-tqqk2dsw/hypogenic.egg-info/requires.txt 2025-06-01T08:04:09,956 writing top-level names to /tmp/pip-pip-egg-info-tqqk2dsw/hypogenic.egg-info/top_level.txt 2025-06-01T08:04:09,957 writing manifest file '/tmp/pip-pip-egg-info-tqqk2dsw/hypogenic.egg-info/SOURCES.txt' 2025-06-01T08:04:10,052 reading manifest file '/tmp/pip-pip-egg-info-tqqk2dsw/hypogenic.egg-info/SOURCES.txt' 2025-06-01T08:04:10,053 reading manifest template 'MANIFEST.in' 2025-06-01T08:04:10,054 adding license file 'LICENSE' 2025-06-01T08:04:10,058 writing manifest file '/tmp/pip-pip-egg-info-tqqk2dsw/hypogenic.egg-info/SOURCES.txt' 2025-06-01T08:04:10,164 Preparing metadata (setup.py): finished with status 'done' 2025-06-01T08:04:10,169 Source in /tmp/pip-wheel-5coauoo4/hypogenic_9ccabf9758064d7c85ae52c28a10df4b has version 0.2.2, which satisfies requirement hypogenic==0.2.2 from https://files.pythonhosted.org/packages/d9/f8/119407a8c78591642b094d492e1b8183f85f0e82497da6ddd777498b174f/hypogenic-0.2.2.tar.gz 2025-06-01T08:04:10,170 Removed hypogenic==0.2.2 from https://files.pythonhosted.org/packages/d9/f8/119407a8c78591642b094d492e1b8183f85f0e82497da6ddd777498b174f/hypogenic-0.2.2.tar.gz from build tracker '/tmp/pip-build-tracker-ct7_u1s8' 2025-06-01T08:04:10,183 Created temporary directory: /tmp/pip-unpack-w0e8y6hq 2025-06-01T08:04:10,184 Created temporary directory: /tmp/pip-unpack-44nu9z43 2025-06-01T08:04:10,184 Building wheels for collected packages: hypogenic 2025-06-01T08:04:10,188 Created temporary directory: /tmp/pip-wheel-nltl6x0s 2025-06-01T08:04:10,189 DEPRECATION: Building 'hypogenic' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'hypogenic'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-06-01T08:04:10,190 Building wheel for hypogenic (setup.py): started 2025-06-01T08:04:10,192 Destination directory: /tmp/pip-wheel-nltl6x0s 2025-06-01T08:04:10,192 Running command python setup.py bdist_wheel 2025-06-01T08:04:11,013 running bdist_wheel 2025-06-01T08:04:11,143 running build 2025-06-01T08:04:11,144 running build_py 2025-06-01T08:04:11,175 creating build/lib/hypogenic 2025-06-01T08:04:11,177 copying hypogenic/LLM_cache.py -> build/lib/hypogenic 2025-06-01T08:04:11,180 copying hypogenic/logger_config.py -> build/lib/hypogenic 2025-06-01T08:04:11,182 copying hypogenic/extract_label.py -> build/lib/hypogenic 2025-06-01T08:04:11,185 copying hypogenic/tasks.py -> build/lib/hypogenic 2025-06-01T08:04:11,187 copying hypogenic/register.py -> build/lib/hypogenic 2025-06-01T08:04:11,189 copying hypogenic/__init__.py -> build/lib/hypogenic 2025-06-01T08:04:11,191 copying hypogenic/utils.py -> build/lib/hypogenic 2025-06-01T08:04:11,193 copying hypogenic/prompt.py -> build/lib/hypogenic 2025-06-01T08:04:11,196 creating build/lib/hypothesis_agent 2025-06-01T08:04:11,197 copying hypothesis_agent/__init__.py -> build/lib/hypothesis_agent 2025-06-01T08:04:11,199 copying hypothesis_agent/utils.py -> build/lib/hypothesis_agent 2025-06-01T08:04:11,201 creating build/lib/IO_prompting 2025-06-01T08:04:11,203 copying IO_prompting/update.py -> build/lib/IO_prompting 2025-06-01T08:04:11,205 copying IO_prompting/generation.py -> build/lib/IO_prompting 2025-06-01T08:04:11,208 copying IO_prompting/__init__.py -> build/lib/IO_prompting 2025-06-01T08:04:11,209 copying IO_prompting/prompt.py -> build/lib/IO_prompting 2025-06-01T08:04:11,212 creating build/lib/hypogenic_cmd 2025-06-01T08:04:11,213 copying hypogenic_cmd/inference.py -> build/lib/hypogenic_cmd 2025-06-01T08:04:11,216 copying hypogenic_cmd/generation.py -> build/lib/hypogenic_cmd 2025-06-01T08:04:11,218 copying hypogenic_cmd/__init__.py -> build/lib/hypogenic_cmd 2025-06-01T08:04:11,220 creating build/lib/hypogenic/algorithm 2025-06-01T08:04:11,221 copying hypogenic/algorithm/__init__.py -> build/lib/hypogenic/algorithm 2025-06-01T08:04:11,223 copying hypogenic/algorithm/summary_information.py -> build/lib/hypogenic/algorithm 2025-06-01T08:04:11,225 copying hypogenic/algorithm/replace.py -> build/lib/hypogenic/algorithm 2025-06-01T08:04:11,228 creating build/lib/hypogenic/LLM_wrapper 2025-06-01T08:04:11,229 copying hypogenic/LLM_wrapper/gpt.py -> build/lib/hypogenic/LLM_wrapper 2025-06-01T08:04:11,232 copying hypogenic/LLM_wrapper/wrapper_utils.py -> build/lib/hypogenic/LLM_wrapper 2025-06-01T08:04:11,234 copying hypogenic/LLM_wrapper/base.py -> build/lib/hypogenic/LLM_wrapper 2025-06-01T08:04:11,236 copying hypogenic/LLM_wrapper/rate_limiter.py -> build/lib/hypogenic/LLM_wrapper 2025-06-01T08:04:11,238 copying hypogenic/LLM_wrapper/__init__.py -> build/lib/hypogenic/LLM_wrapper 2025-06-01T08:04:11,240 copying hypogenic/LLM_wrapper/claude.py -> build/lib/hypogenic/LLM_wrapper 2025-06-01T08:04:11,242 copying hypogenic/LLM_wrapper/local.py -> build/lib/hypogenic/LLM_wrapper 2025-06-01T08:04:11,245 creating build/lib/hypogenic/algorithm/generation 2025-06-01T08:04:11,246 copying hypogenic/algorithm/generation/base.py -> build/lib/hypogenic/algorithm/generation 2025-06-01T08:04:11,249 copying hypogenic/algorithm/generation/default.py -> build/lib/hypogenic/algorithm/generation 2025-06-01T08:04:11,251 copying hypogenic/algorithm/generation/__init__.py -> build/lib/hypogenic/algorithm/generation 2025-06-01T08:04:11,253 copying hypogenic/algorithm/generation/utils.py -> build/lib/hypogenic/algorithm/generation 2025-06-01T08:04:11,256 creating build/lib/hypogenic/algorithm/update 2025-06-01T08:04:11,257 copying hypogenic/algorithm/update/base.py -> build/lib/hypogenic/algorithm/update 2025-06-01T08:04:11,259 copying hypogenic/algorithm/update/sampling.py -> build/lib/hypogenic/algorithm/update 2025-06-01T08:04:11,262 copying hypogenic/algorithm/update/default.py -> build/lib/hypogenic/algorithm/update 2025-06-01T08:04:11,264 copying hypogenic/algorithm/update/__init__.py -> build/lib/hypogenic/algorithm/update 2025-06-01T08:04:11,267 creating build/lib/hypogenic/algorithm/inference 2025-06-01T08:04:11,268 copying hypogenic/algorithm/inference/base.py -> build/lib/hypogenic/algorithm/inference 2025-06-01T08:04:11,270 copying hypogenic/algorithm/inference/two_step_adaptive.py -> build/lib/hypogenic/algorithm/inference 2025-06-01T08:04:11,272 copying hypogenic/algorithm/inference/default.py -> build/lib/hypogenic/algorithm/inference 2025-06-01T08:04:11,275 copying hypogenic/algorithm/inference/filter_and_weight.py -> build/lib/hypogenic/algorithm/inference 2025-06-01T08:04:11,277 copying hypogenic/algorithm/inference/one_step_adaptive.py -> build/lib/hypogenic/algorithm/inference 2025-06-01T08:04:11,280 copying hypogenic/algorithm/inference/__init__.py -> build/lib/hypogenic/algorithm/inference 2025-06-01T08:04:11,282 copying hypogenic/algorithm/inference/upperbound.py -> build/lib/hypogenic/algorithm/inference 2025-06-01T08:04:11,285 creating build/lib/hypothesis_agent/data_analysis_agent 2025-06-01T08:04:11,286 copying hypothesis_agent/data_analysis_agent/update.py -> build/lib/hypothesis_agent/data_analysis_agent 2025-06-01T08:04:11,289 copying hypothesis_agent/data_analysis_agent/inference.py -> build/lib/hypothesis_agent/data_analysis_agent 2025-06-01T08:04:11,292 copying hypothesis_agent/data_analysis_agent/union_generation.py -> build/lib/hypothesis_agent/data_analysis_agent 2025-06-01T08:04:11,295 copying hypothesis_agent/data_analysis_agent/generation.py -> build/lib/hypothesis_agent/data_analysis_agent 2025-06-01T08:04:11,298 copying hypothesis_agent/data_analysis_agent/__init__.py -> build/lib/hypothesis_agent/data_analysis_agent 2025-06-01T08:04:11,300 copying hypothesis_agent/data_analysis_agent/summary_information.py -> build/lib/hypothesis_agent/data_analysis_agent 2025-06-01T08:04:11,301 copying hypothesis_agent/data_analysis_agent/task.py -> build/lib/hypothesis_agent/data_analysis_agent 2025-06-01T08:04:11,304 copying hypothesis_agent/data_analysis_agent/utils.py -> build/lib/hypothesis_agent/data_analysis_agent 2025-06-01T08:04:11,306 copying hypothesis_agent/data_analysis_agent/prompt.py -> build/lib/hypothesis_agent/data_analysis_agent 2025-06-01T08:04:11,309 creating build/lib/hypothesis_agent/literature_review_agent 2025-06-01T08:04:11,310 copying hypothesis_agent/literature_review_agent/__init__.py -> build/lib/hypothesis_agent/literature_review_agent 2025-06-01T08:04:11,313 copying hypothesis_agent/literature_review_agent/literature_review.py -> build/lib/hypothesis_agent/literature_review_agent 2025-06-01T08:04:11,315 creating build/lib/hypothesis_agent/literature_review_agent/literature_processor 2025-06-01T08:04:11,316 copying hypothesis_agent/literature_review_agent/literature_processor/process_pdf.py -> build/lib/hypothesis_agent/literature_review_agent/literature_processor 2025-06-01T08:04:11,319 copying hypothesis_agent/literature_review_agent/literature_processor/summarize.py -> build/lib/hypothesis_agent/literature_review_agent/literature_processor 2025-06-01T08:04:11,321 copying hypothesis_agent/literature_review_agent/literature_processor/extract_info.py -> build/lib/hypothesis_agent/literature_review_agent/literature_processor 2025-06-01T08:04:11,323 copying hypothesis_agent/literature_review_agent/literature_processor/__init__.py -> build/lib/hypothesis_agent/literature_review_agent/literature_processor 2025-06-01T08:04:11,364 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-06-01T08:04:11,365 !! 2025-06-01T08:04:11,366 ******************************************************************************** 2025-06-01T08:04:11,367 Please avoid running ``setup.py`` directly. 2025-06-01T08:04:11,367 Instead, use pypa/build, pypa/installer or other 2025-06-01T08:04:11,368 standards-based tools. 2025-06-01T08:04:11,369 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-06-01T08:04:11,370 or your builds will no longer be supported. 2025-06-01T08:04:11,371 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-06-01T08:04:11,372 ******************************************************************************** 2025-06-01T08:04:11,373 !! 2025-06-01T08:04:11,373 self.initialize_options() 2025-06-01T08:04:11,395 installing to build/bdist.linux-armv7l/wheel 2025-06-01T08:04:11,395 running install 2025-06-01T08:04:11,420 running install_lib 2025-06-01T08:04:11,448 creating build/bdist.linux-armv7l/wheel 2025-06-01T08:04:11,450 creating build/bdist.linux-armv7l/wheel/hypogenic 2025-06-01T08:04:11,451 copying build/lib/hypogenic/LLM_cache.py -> build/bdist.linux-armv7l/wheel/./hypogenic 2025-06-01T08:04:11,454 copying build/lib/hypogenic/logger_config.py -> build/bdist.linux-armv7l/wheel/./hypogenic 2025-06-01T08:04:11,457 creating build/bdist.linux-armv7l/wheel/hypogenic/algorithm 2025-06-01T08:04:11,459 creating build/bdist.linux-armv7l/wheel/hypogenic/algorithm/generation 2025-06-01T08:04:11,460 copying build/lib/hypogenic/algorithm/generation/base.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/generation 2025-06-01T08:04:11,463 copying build/lib/hypogenic/algorithm/generation/default.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/generation 2025-06-01T08:04:11,465 copying build/lib/hypogenic/algorithm/generation/__init__.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/generation 2025-06-01T08:04:11,467 copying build/lib/hypogenic/algorithm/generation/utils.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/generation 2025-06-01T08:04:11,470 creating build/bdist.linux-armv7l/wheel/hypogenic/algorithm/update 2025-06-01T08:04:11,471 copying build/lib/hypogenic/algorithm/update/base.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/update 2025-06-01T08:04:11,474 copying build/lib/hypogenic/algorithm/update/sampling.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/update 2025-06-01T08:04:11,476 copying build/lib/hypogenic/algorithm/update/default.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/update 2025-06-01T08:04:11,479 copying build/lib/hypogenic/algorithm/update/__init__.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/update 2025-06-01T08:04:11,481 copying build/lib/hypogenic/algorithm/__init__.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm 2025-06-01T08:04:11,482 copying build/lib/hypogenic/algorithm/summary_information.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm 2025-06-01T08:04:11,485 creating build/bdist.linux-armv7l/wheel/hypogenic/algorithm/inference 2025-06-01T08:04:11,486 copying build/lib/hypogenic/algorithm/inference/base.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/inference 2025-06-01T08:04:11,489 copying build/lib/hypogenic/algorithm/inference/two_step_adaptive.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/inference 2025-06-01T08:04:11,491 copying build/lib/hypogenic/algorithm/inference/default.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/inference 2025-06-01T08:04:11,493 copying build/lib/hypogenic/algorithm/inference/filter_and_weight.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/inference 2025-06-01T08:04:11,495 copying build/lib/hypogenic/algorithm/inference/one_step_adaptive.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/inference 2025-06-01T08:04:11,498 copying build/lib/hypogenic/algorithm/inference/__init__.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/inference 2025-06-01T08:04:11,500 copying build/lib/hypogenic/algorithm/inference/upperbound.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/inference 2025-06-01T08:04:11,502 copying build/lib/hypogenic/algorithm/replace.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm 2025-06-01T08:04:11,504 copying build/lib/hypogenic/extract_label.py -> build/bdist.linux-armv7l/wheel/./hypogenic 2025-06-01T08:04:11,507 copying build/lib/hypogenic/tasks.py -> build/bdist.linux-armv7l/wheel/./hypogenic 2025-06-01T08:04:11,509 copying build/lib/hypogenic/register.py -> build/bdist.linux-armv7l/wheel/./hypogenic 2025-06-01T08:04:11,511 copying build/lib/hypogenic/__init__.py -> build/bdist.linux-armv7l/wheel/./hypogenic 2025-06-01T08:04:11,512 copying build/lib/hypogenic/utils.py -> build/bdist.linux-armv7l/wheel/./hypogenic 2025-06-01T08:04:11,514 copying build/lib/hypogenic/prompt.py -> build/bdist.linux-armv7l/wheel/./hypogenic 2025-06-01T08:04:11,517 creating build/bdist.linux-armv7l/wheel/hypogenic/LLM_wrapper 2025-06-01T08:04:11,519 copying build/lib/hypogenic/LLM_wrapper/gpt.py -> build/bdist.linux-armv7l/wheel/./hypogenic/LLM_wrapper 2025-06-01T08:04:11,521 copying build/lib/hypogenic/LLM_wrapper/wrapper_utils.py -> build/bdist.linux-armv7l/wheel/./hypogenic/LLM_wrapper 2025-06-01T08:04:11,523 copying build/lib/hypogenic/LLM_wrapper/base.py -> build/bdist.linux-armv7l/wheel/./hypogenic/LLM_wrapper 2025-06-01T08:04:11,525 copying build/lib/hypogenic/LLM_wrapper/rate_limiter.py -> build/bdist.linux-armv7l/wheel/./hypogenic/LLM_wrapper 2025-06-01T08:04:11,527 copying build/lib/hypogenic/LLM_wrapper/__init__.py -> build/bdist.linux-armv7l/wheel/./hypogenic/LLM_wrapper 2025-06-01T08:04:11,529 copying build/lib/hypogenic/LLM_wrapper/claude.py -> build/bdist.linux-armv7l/wheel/./hypogenic/LLM_wrapper 2025-06-01T08:04:11,532 copying build/lib/hypogenic/LLM_wrapper/local.py -> build/bdist.linux-armv7l/wheel/./hypogenic/LLM_wrapper 2025-06-01T08:04:11,535 creating build/bdist.linux-armv7l/wheel/hypothesis_agent 2025-06-01T08:04:11,537 creating build/bdist.linux-armv7l/wheel/hypothesis_agent/data_analysis_agent 2025-06-01T08:04:11,538 copying build/lib/hypothesis_agent/data_analysis_agent/update.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/data_analysis_agent 2025-06-01T08:04:11,541 copying build/lib/hypothesis_agent/data_analysis_agent/inference.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/data_analysis_agent 2025-06-01T08:04:11,543 copying build/lib/hypothesis_agent/data_analysis_agent/union_generation.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/data_analysis_agent 2025-06-01T08:04:11,546 copying build/lib/hypothesis_agent/data_analysis_agent/generation.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/data_analysis_agent 2025-06-01T08:04:11,548 copying build/lib/hypothesis_agent/data_analysis_agent/__init__.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/data_analysis_agent 2025-06-01T08:04:11,551 copying build/lib/hypothesis_agent/data_analysis_agent/summary_information.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/data_analysis_agent 2025-06-01T08:04:11,553 copying build/lib/hypothesis_agent/data_analysis_agent/task.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/data_analysis_agent 2025-06-01T08:04:11,555 copying build/lib/hypothesis_agent/data_analysis_agent/utils.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/data_analysis_agent 2025-06-01T08:04:11,557 copying build/lib/hypothesis_agent/data_analysis_agent/prompt.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/data_analysis_agent 2025-06-01T08:04:11,559 copying build/lib/hypothesis_agent/__init__.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent 2025-06-01T08:04:11,561 copying build/lib/hypothesis_agent/utils.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent 2025-06-01T08:04:11,564 creating build/bdist.linux-armv7l/wheel/hypothesis_agent/literature_review_agent 2025-06-01T08:04:11,565 copying build/lib/hypothesis_agent/literature_review_agent/__init__.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/literature_review_agent 2025-06-01T08:04:11,567 copying build/lib/hypothesis_agent/literature_review_agent/literature_review.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/literature_review_agent 2025-06-01T08:04:11,569 creating build/bdist.linux-armv7l/wheel/hypothesis_agent/literature_review_agent/literature_processor 2025-06-01T08:04:11,571 copying build/lib/hypothesis_agent/literature_review_agent/literature_processor/process_pdf.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/literature_review_agent/literature_processor 2025-06-01T08:04:11,573 copying build/lib/hypothesis_agent/literature_review_agent/literature_processor/summarize.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/literature_review_agent/literature_processor 2025-06-01T08:04:11,575 copying build/lib/hypothesis_agent/literature_review_agent/literature_processor/extract_info.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/literature_review_agent/literature_processor 2025-06-01T08:04:11,577 copying build/lib/hypothesis_agent/literature_review_agent/literature_processor/__init__.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/literature_review_agent/literature_processor 2025-06-01T08:04:11,579 creating build/bdist.linux-armv7l/wheel/IO_prompting 2025-06-01T08:04:11,580 copying build/lib/IO_prompting/update.py -> build/bdist.linux-armv7l/wheel/./IO_prompting 2025-06-01T08:04:11,583 copying build/lib/IO_prompting/generation.py -> build/bdist.linux-armv7l/wheel/./IO_prompting 2025-06-01T08:04:11,586 copying build/lib/IO_prompting/__init__.py -> build/bdist.linux-armv7l/wheel/./IO_prompting 2025-06-01T08:04:11,588 copying build/lib/IO_prompting/prompt.py -> build/bdist.linux-armv7l/wheel/./IO_prompting 2025-06-01T08:04:11,590 creating build/bdist.linux-armv7l/wheel/hypogenic_cmd 2025-06-01T08:04:11,591 copying build/lib/hypogenic_cmd/inference.py -> build/bdist.linux-armv7l/wheel/./hypogenic_cmd 2025-06-01T08:04:11,594 copying build/lib/hypogenic_cmd/generation.py -> build/bdist.linux-armv7l/wheel/./hypogenic_cmd 2025-06-01T08:04:11,597 copying build/lib/hypogenic_cmd/__init__.py -> build/bdist.linux-armv7l/wheel/./hypogenic_cmd 2025-06-01T08:04:11,598 running install_egg_info 2025-06-01T08:04:11,635 running egg_info 2025-06-01T08:04:11,663 writing hypogenic.egg-info/PKG-INFO 2025-06-01T08:04:11,667 writing dependency_links to hypogenic.egg-info/dependency_links.txt 2025-06-01T08:04:11,669 writing entry points to hypogenic.egg-info/entry_points.txt 2025-06-01T08:04:11,671 writing requirements to hypogenic.egg-info/requires.txt 2025-06-01T08:04:11,672 writing top-level names to hypogenic.egg-info/top_level.txt 2025-06-01T08:04:11,714 reading manifest file 'hypogenic.egg-info/SOURCES.txt' 2025-06-01T08:04:11,719 reading manifest template 'MANIFEST.in' 2025-06-01T08:04:11,720 adding license file 'LICENSE' 2025-06-01T08:04:11,725 writing manifest file 'hypogenic.egg-info/SOURCES.txt' 2025-06-01T08:04:11,727 Copying hypogenic.egg-info to build/bdist.linux-armv7l/wheel/./hypogenic-0.2.2-py3.11.egg-info 2025-06-01T08:04:11,741 running install_scripts 2025-06-01T08:04:11,759 creating build/bdist.linux-armv7l/wheel/hypogenic-0.2.2.dist-info/WHEEL 2025-06-01T08:04:11,762 creating '/tmp/pip-wheel-nltl6x0s/hypogenic-0.2.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-06-01T08:04:11,765 adding 'IO_prompting/__init__.py' 2025-06-01T08:04:11,767 adding 'IO_prompting/generation.py' 2025-06-01T08:04:11,768 adding 'IO_prompting/prompt.py' 2025-06-01T08:04:11,770 adding 'IO_prompting/update.py' 2025-06-01T08:04:11,773 adding 'hypogenic/LLM_cache.py' 2025-06-01T08:04:11,774 adding 'hypogenic/__init__.py' 2025-06-01T08:04:11,776 adding 'hypogenic/extract_label.py' 2025-06-01T08:04:11,777 adding 'hypogenic/logger_config.py' 2025-06-01T08:04:11,779 adding 'hypogenic/prompt.py' 2025-06-01T08:04:11,781 adding 'hypogenic/register.py' 2025-06-01T08:04:11,782 adding 'hypogenic/tasks.py' 2025-06-01T08:04:11,784 adding 'hypogenic/utils.py' 2025-06-01T08:04:11,786 adding 'hypogenic/LLM_wrapper/__init__.py' 2025-06-01T08:04:11,787 adding 'hypogenic/LLM_wrapper/base.py' 2025-06-01T08:04:11,789 adding 'hypogenic/LLM_wrapper/claude.py' 2025-06-01T08:04:11,790 adding 'hypogenic/LLM_wrapper/gpt.py' 2025-06-01T08:04:11,792 adding 'hypogenic/LLM_wrapper/local.py' 2025-06-01T08:04:11,793 adding 'hypogenic/LLM_wrapper/rate_limiter.py' 2025-06-01T08:04:11,795 adding 'hypogenic/LLM_wrapper/wrapper_utils.py' 2025-06-01T08:04:11,796 adding 'hypogenic/algorithm/__init__.py' 2025-06-01T08:04:11,798 adding 'hypogenic/algorithm/replace.py' 2025-06-01T08:04:11,799 adding 'hypogenic/algorithm/summary_information.py' 2025-06-01T08:04:11,801 adding 'hypogenic/algorithm/generation/__init__.py' 2025-06-01T08:04:11,803 adding 'hypogenic/algorithm/generation/base.py' 2025-06-01T08:04:11,804 adding 'hypogenic/algorithm/generation/default.py' 2025-06-01T08:04:11,806 adding 'hypogenic/algorithm/generation/utils.py' 2025-06-01T08:04:11,808 adding 'hypogenic/algorithm/inference/__init__.py' 2025-06-01T08:04:11,809 adding 'hypogenic/algorithm/inference/base.py' 2025-06-01T08:04:11,811 adding 'hypogenic/algorithm/inference/default.py' 2025-06-01T08:04:11,812 adding 'hypogenic/algorithm/inference/filter_and_weight.py' 2025-06-01T08:04:11,814 adding 'hypogenic/algorithm/inference/one_step_adaptive.py' 2025-06-01T08:04:11,816 adding 'hypogenic/algorithm/inference/two_step_adaptive.py' 2025-06-01T08:04:11,817 adding 'hypogenic/algorithm/inference/upperbound.py' 2025-06-01T08:04:11,819 adding 'hypogenic/algorithm/update/__init__.py' 2025-06-01T08:04:11,820 adding 'hypogenic/algorithm/update/base.py' 2025-06-01T08:04:11,822 adding 'hypogenic/algorithm/update/default.py' 2025-06-01T08:04:11,824 adding 'hypogenic/algorithm/update/sampling.py' 2025-06-01T08:04:11,826 adding 'hypogenic-0.2.2.dist-info/licenses/LICENSE' 2025-06-01T08:04:11,827 adding 'hypogenic_cmd/__init__.py' 2025-06-01T08:04:11,829 adding 'hypogenic_cmd/generation.py' 2025-06-01T08:04:11,831 adding 'hypogenic_cmd/inference.py' 2025-06-01T08:04:11,832 adding 'hypothesis_agent/__init__.py' 2025-06-01T08:04:11,833 adding 'hypothesis_agent/utils.py' 2025-06-01T08:04:11,835 adding 'hypothesis_agent/data_analysis_agent/__init__.py' 2025-06-01T08:04:11,837 adding 'hypothesis_agent/data_analysis_agent/generation.py' 2025-06-01T08:04:11,838 adding 'hypothesis_agent/data_analysis_agent/inference.py' 2025-06-01T08:04:11,840 adding 'hypothesis_agent/data_analysis_agent/prompt.py' 2025-06-01T08:04:11,841 adding 'hypothesis_agent/data_analysis_agent/summary_information.py' 2025-06-01T08:04:11,843 adding 'hypothesis_agent/data_analysis_agent/task.py' 2025-06-01T08:04:11,845 adding 'hypothesis_agent/data_analysis_agent/union_generation.py' 2025-06-01T08:04:11,846 adding 'hypothesis_agent/data_analysis_agent/update.py' 2025-06-01T08:04:11,848 adding 'hypothesis_agent/data_analysis_agent/utils.py' 2025-06-01T08:04:11,850 adding 'hypothesis_agent/literature_review_agent/__init__.py' 2025-06-01T08:04:11,851 adding 'hypothesis_agent/literature_review_agent/literature_review.py' 2025-06-01T08:04:11,852 adding 'hypothesis_agent/literature_review_agent/literature_processor/__init__.py' 2025-06-01T08:04:11,854 adding 'hypothesis_agent/literature_review_agent/literature_processor/extract_info.py' 2025-06-01T08:04:11,855 adding 'hypothesis_agent/literature_review_agent/literature_processor/process_pdf.py' 2025-06-01T08:04:11,856 adding 'hypothesis_agent/literature_review_agent/literature_processor/summarize.py' 2025-06-01T08:04:11,858 adding 'hypogenic-0.2.2.dist-info/METADATA' 2025-06-01T08:04:11,859 adding 'hypogenic-0.2.2.dist-info/WHEEL' 2025-06-01T08:04:11,860 adding 'hypogenic-0.2.2.dist-info/entry_points.txt' 2025-06-01T08:04:11,861 adding 'hypogenic-0.2.2.dist-info/top_level.txt' 2025-06-01T08:04:11,863 adding 'hypogenic-0.2.2.dist-info/RECORD' 2025-06-01T08:04:11,865 removing build/bdist.linux-armv7l/wheel 2025-06-01T08:04:11,989 Building wheel for hypogenic (setup.py): finished with status 'done' 2025-06-01T08:04:11,992 Created wheel for hypogenic: filename=hypogenic-0.2.2-py3-none-any.whl size=78296 sha256=db62f8af2ff1bf1ba4e77aaacdd19ca728383b0765599067d22202ee0041cd0a 2025-06-01T08:04:11,993 Stored in directory: /tmp/pip-ephem-wheel-cache-d1wzokn5/wheels/38/1b/d1/a087a238637720c7a223d831acaa9efb7ac40b011bdb3fd77f 2025-06-01T08:04:12,008 Successfully built hypogenic 2025-06-01T08:04:12,014 Removed build tracker: '/tmp/pip-build-tracker-ct7_u1s8'