2025-06-01T08:04:29,008 Created temporary directory: /tmp/pip-build-tracker-l2dr416c 2025-06-01T08:04:29,009 Initialized build tracking at /tmp/pip-build-tracker-l2dr416c 2025-06-01T08:04:29,010 Created build tracker: /tmp/pip-build-tracker-l2dr416c 2025-06-01T08:04:29,010 Entered build tracker: /tmp/pip-build-tracker-l2dr416c 2025-06-01T08:04:29,011 Created temporary directory: /tmp/pip-wheel-u80mobtw 2025-06-01T08:04:29,015 Created temporary directory: /tmp/pip-ephem-wheel-cache-4170vo4b 2025-06-01T08:04:29,064 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-06-01T08:04:29,066 2 location(s) to search for versions of hypogenic: 2025-06-01T08:04:29,066 * https://pypi.org/simple/hypogenic/ 2025-06-01T08:04:29,066 * https://www.piwheels.org/simple/hypogenic/ 2025-06-01T08:04:29,067 Fetching project page and analyzing links: https://pypi.org/simple/hypogenic/ 2025-06-01T08:04:29,068 Getting page https://pypi.org/simple/hypogenic/ 2025-06-01T08:04:29,069 Found index url https://pypi.org/simple/ 2025-06-01T08:04:29,217 Fetched page https://pypi.org/simple/hypogenic/ as application/vnd.pypi.simple.v1+json 2025-06-01T08:04:29,219 Skipping link: No binaries permitted for hypogenic: https://files.pythonhosted.org/packages/21/da/8572dec0493164b4573f41bb1ace32647eebd404c4f02b7ffacd5836a33b/hypogenic-0.0.1-py2.py3-none-any.whl (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.9) 2025-06-01T08:04:29,220 Skipping link: No binaries permitted for hypogenic: https://files.pythonhosted.org/packages/f4/db/1769d8954270750cff6e07531c74415bf0d9db4d88c8d90ab2511f1e8da3/hypogenic-0.1.1-py3-none-any.whl (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.9) 2025-06-01T08:04:29,221 Found link https://files.pythonhosted.org/packages/17/b4/a65e31064d7f798aaddf13757e6853c22dacebb069c38c04d1eabf08702d/hypogenic-0.1.1.tar.gz (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.9), version: 0.1.1 2025-06-01T08:04:29,222 Skipping link: No binaries permitted for hypogenic: https://files.pythonhosted.org/packages/d3/be/269b7faadb4ab682ea292a0288ef2e027bdde5358bed6cce12803535b9f2/hypogenic-0.2.2-py3-none-any.whl (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.10) 2025-06-01T08:04:29,223 Found link https://files.pythonhosted.org/packages/d9/f8/119407a8c78591642b094d492e1b8183f85f0e82497da6ddd777498b174f/hypogenic-0.2.2.tar.gz (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.10), version: 0.2.2 2025-06-01T08:04:29,223 Skipping link: No binaries permitted for hypogenic: https://files.pythonhosted.org/packages/56/ad/ae6707840022069cb4cff0e1e3de35bdcc22691c54800979e1ba6bd0a972/hypogenic-0.3.1-py3-none-any.whl (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.10) 2025-06-01T08:04:29,224 Found link https://files.pythonhosted.org/packages/82/1c/735665540ffa59bbd99edeae2b6b217ce11d09c004cfb200a65424abf850/hypogenic-0.3.1.tar.gz (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.10), version: 0.3.1 2025-06-01T08:04:29,224 Skipping link: No binaries permitted for hypogenic: https://files.pythonhosted.org/packages/f0/5c/419a7009530c7a281cfc5a8e75cef9a9108bb4ab68fdcbbc77894c09f004/hypogenic-0.3.2-py3-none-any.whl (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.10) 2025-06-01T08:04:29,225 Found link https://files.pythonhosted.org/packages/ae/42/c0fcc75e33b49421edeebb8b6957bedbe021ed3a7d4106e6e2c6807429d3/hypogenic-0.3.2.tar.gz (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.10), version: 0.3.2 2025-06-01T08:04:29,226 Skipping link: No binaries permitted for hypogenic: https://files.pythonhosted.org/packages/5e/78/1b8ec74bc431e62173684ad36b3151ed334a5b47f0591a5ffa411cf35bcf/hypogenic-0.3.3-py3-none-any.whl (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.10) 2025-06-01T08:04:29,226 Found link https://files.pythonhosted.org/packages/48/80/85ff70458ed39bcdd8592f9dda389e9fc57ec58b127e1b7364a3314ad4b0/hypogenic-0.3.3.tar.gz (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.10), version: 0.3.3 2025-06-01T08:04:29,227 Skipping link: No binaries permitted for hypogenic: https://files.pythonhosted.org/packages/93/5d/47d1efc0bfee85da4c7e4b1300ece10cb416f24f6edc1e70eb0850b604fc/hypogenic-0.3.4-py3-none-any.whl (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.10) 2025-06-01T08:04:29,228 Found link https://files.pythonhosted.org/packages/69/9b/ecbaf2131d5ee385518fc1f2d826946a81d0a8a7d5207aa279c7c0a8b5da/hypogenic-0.3.4.tar.gz (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.10), version: 0.3.4 2025-06-01T08:04:29,228 Skipping link: No binaries permitted for hypogenic: https://files.pythonhosted.org/packages/91/00/a3d2b9d626832ad0b7b7807a6795877ab98875a36d27035a4759a84b248b/hypogenic-0.3.5-py3-none-any.whl (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.10) 2025-06-01T08:04:29,229 Found link https://files.pythonhosted.org/packages/b1/a3/9abb3170ccf2337f9e7485d11f6be66a7def96b0438a9dbfb398b82f3e86/hypogenic-0.3.5.tar.gz (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.10), version: 0.3.5 2025-06-01T08:04:29,229 Fetching project page and analyzing links: https://www.piwheels.org/simple/hypogenic/ 2025-06-01T08:04:29,230 Getting page https://www.piwheels.org/simple/hypogenic/ 2025-06-01T08:04:29,231 Found index url https://www.piwheels.org/simple/ 2025-06-01T08:04:29,383 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/hypogenic/ 2025-06-01T08:04:30,034 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/hypogenic/ 2025-06-01T08:04:31,186 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/hypogenic/ 2025-06-01T08:04:33,383 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/hypogenic/ 2025-06-01T08:04:37,588 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/hypogenic/ 2025-06-01T08:04:37,805 Could not fetch URL https://www.piwheels.org/simple/hypogenic/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/hypogenic/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping 2025-06-01T08:04:37,807 Skipping link: not a file: https://www.piwheels.org/simple/hypogenic/ 2025-06-01T08:04:37,808 Skipping link: not a file: https://pypi.org/simple/hypogenic/ 2025-06-01T08:04:37,825 Given no hashes to check 1 links for project 'hypogenic': discarding no candidates 2025-06-01T08:04:37,827 Collecting hypogenic==0.3.1 2025-06-01T08:04:37,829 Created temporary directory: /tmp/pip-unpack-69c57_ma 2025-06-01T08:04:38,048 Downloading hypogenic-0.3.1.tar.gz (54 kB) 2025-06-01T08:04:38,233 Added hypogenic==0.3.1 from https://files.pythonhosted.org/packages/82/1c/735665540ffa59bbd99edeae2b6b217ce11d09c004cfb200a65424abf850/hypogenic-0.3.1.tar.gz to build tracker '/tmp/pip-build-tracker-l2dr416c' 2025-06-01T08:04:38,235 Running setup.py (path:/tmp/pip-wheel-u80mobtw/hypogenic_59774cc8b2dc4e85a675ac97d5749acd/setup.py) egg_info for package hypogenic 2025-06-01T08:04:38,236 Created temporary directory: /tmp/pip-pip-egg-info-e6b4mrlo 2025-06-01T08:04:38,237 Preparing metadata (setup.py): started 2025-06-01T08:04:38,238 Running command python setup.py egg_info 2025-06-01T08:04:39,141 running egg_info 2025-06-01T08:04:39,168 creating /tmp/pip-pip-egg-info-e6b4mrlo/hypogenic.egg-info 2025-06-01T08:04:39,170 writing /tmp/pip-pip-egg-info-e6b4mrlo/hypogenic.egg-info/PKG-INFO 2025-06-01T08:04:39,174 writing dependency_links to /tmp/pip-pip-egg-info-e6b4mrlo/hypogenic.egg-info/dependency_links.txt 2025-06-01T08:04:39,176 writing entry points to /tmp/pip-pip-egg-info-e6b4mrlo/hypogenic.egg-info/entry_points.txt 2025-06-01T08:04:39,178 writing requirements to /tmp/pip-pip-egg-info-e6b4mrlo/hypogenic.egg-info/requires.txt 2025-06-01T08:04:39,179 writing top-level names to /tmp/pip-pip-egg-info-e6b4mrlo/hypogenic.egg-info/top_level.txt 2025-06-01T08:04:39,181 writing manifest file '/tmp/pip-pip-egg-info-e6b4mrlo/hypogenic.egg-info/SOURCES.txt' 2025-06-01T08:04:39,278 reading manifest file '/tmp/pip-pip-egg-info-e6b4mrlo/hypogenic.egg-info/SOURCES.txt' 2025-06-01T08:04:39,280 reading manifest template 'MANIFEST.in' 2025-06-01T08:04:39,282 adding license file 'LICENSE' 2025-06-01T08:04:39,287 writing manifest file '/tmp/pip-pip-egg-info-e6b4mrlo/hypogenic.egg-info/SOURCES.txt' 2025-06-01T08:04:39,391 Preparing metadata (setup.py): finished with status 'done' 2025-06-01T08:04:39,396 Source in /tmp/pip-wheel-u80mobtw/hypogenic_59774cc8b2dc4e85a675ac97d5749acd has version 0.3.1, which satisfies requirement hypogenic==0.3.1 from https://files.pythonhosted.org/packages/82/1c/735665540ffa59bbd99edeae2b6b217ce11d09c004cfb200a65424abf850/hypogenic-0.3.1.tar.gz 2025-06-01T08:04:39,397 Removed hypogenic==0.3.1 from https://files.pythonhosted.org/packages/82/1c/735665540ffa59bbd99edeae2b6b217ce11d09c004cfb200a65424abf850/hypogenic-0.3.1.tar.gz from build tracker '/tmp/pip-build-tracker-l2dr416c' 2025-06-01T08:04:39,410 Created temporary directory: /tmp/pip-unpack-q182fqf5 2025-06-01T08:04:39,411 Created temporary directory: /tmp/pip-unpack-z8u1d2fh 2025-06-01T08:04:39,411 Building wheels for collected packages: hypogenic 2025-06-01T08:04:39,415 Created temporary directory: /tmp/pip-wheel-2slq7ukv 2025-06-01T08:04:39,416 DEPRECATION: Building 'hypogenic' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'hypogenic'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-06-01T08:04:39,417 Building wheel for hypogenic (setup.py): started 2025-06-01T08:04:39,418 Destination directory: /tmp/pip-wheel-2slq7ukv 2025-06-01T08:04:39,419 Running command python setup.py bdist_wheel 2025-06-01T08:04:40,242 running bdist_wheel 2025-06-01T08:04:40,379 running build 2025-06-01T08:04:40,379 running build_py 2025-06-01T08:04:40,410 creating build/lib/hypothesis_agent 2025-06-01T08:04:40,412 copying hypothesis_agent/utils.py -> build/lib/hypothesis_agent 2025-06-01T08:04:40,414 copying hypothesis_agent/__init__.py -> build/lib/hypothesis_agent 2025-06-01T08:04:40,416 creating build/lib/hypogenic_cmd 2025-06-01T08:04:40,417 copying hypogenic_cmd/__init__.py -> build/lib/hypogenic_cmd 2025-06-01T08:04:40,419 copying hypogenic_cmd/generation.py -> build/lib/hypogenic_cmd 2025-06-01T08:04:40,422 copying hypogenic_cmd/inference.py -> build/lib/hypogenic_cmd 2025-06-01T08:04:40,425 creating build/lib/hypogenic 2025-06-01T08:04:40,426 copying hypogenic/register.py -> build/lib/hypogenic 2025-06-01T08:04:40,428 copying hypogenic/LLM_cache.py -> build/lib/hypogenic 2025-06-01T08:04:40,430 copying hypogenic/utils.py -> build/lib/hypogenic 2025-06-01T08:04:40,432 copying hypogenic/__init__.py -> build/lib/hypogenic 2025-06-01T08:04:40,434 copying hypogenic/prompt.py -> build/lib/hypogenic 2025-06-01T08:04:40,436 copying hypogenic/tasks.py -> build/lib/hypogenic 2025-06-01T08:04:40,438 copying hypogenic/logger_config.py -> build/lib/hypogenic 2025-06-01T08:04:40,440 copying hypogenic/extract_label.py -> build/lib/hypogenic 2025-06-01T08:04:40,443 creating build/lib/IO_prompting 2025-06-01T08:04:40,444 copying IO_prompting/__init__.py -> build/lib/IO_prompting 2025-06-01T08:04:40,445 copying IO_prompting/prompt.py -> build/lib/IO_prompting 2025-06-01T08:04:40,447 copying IO_prompting/generation.py -> build/lib/IO_prompting 2025-06-01T08:04:40,449 copying IO_prompting/update.py -> build/lib/IO_prompting 2025-06-01T08:04:40,452 creating build/lib/hypothesis_agent/literature_review_agent 2025-06-01T08:04:40,453 copying hypothesis_agent/literature_review_agent/__init__.py -> build/lib/hypothesis_agent/literature_review_agent 2025-06-01T08:04:40,455 copying hypothesis_agent/literature_review_agent/literature_review.py -> build/lib/hypothesis_agent/literature_review_agent 2025-06-01T08:04:40,457 creating build/lib/hypothesis_agent/data_analysis_agent 2025-06-01T08:04:40,458 copying hypothesis_agent/data_analysis_agent/task.py -> build/lib/hypothesis_agent/data_analysis_agent 2025-06-01T08:04:40,460 copying hypothesis_agent/data_analysis_agent/union_generation.py -> build/lib/hypothesis_agent/data_analysis_agent 2025-06-01T08:04:40,463 copying hypothesis_agent/data_analysis_agent/utils.py -> build/lib/hypothesis_agent/data_analysis_agent 2025-06-01T08:04:40,465 copying hypothesis_agent/data_analysis_agent/__init__.py -> build/lib/hypothesis_agent/data_analysis_agent 2025-06-01T08:04:40,467 copying hypothesis_agent/data_analysis_agent/prompt.py -> build/lib/hypothesis_agent/data_analysis_agent 2025-06-01T08:04:40,469 copying hypothesis_agent/data_analysis_agent/generation.py -> build/lib/hypothesis_agent/data_analysis_agent 2025-06-01T08:04:40,472 copying hypothesis_agent/data_analysis_agent/summary_information.py -> build/lib/hypothesis_agent/data_analysis_agent 2025-06-01T08:04:40,474 copying hypothesis_agent/data_analysis_agent/inference.py -> build/lib/hypothesis_agent/data_analysis_agent 2025-06-01T08:04:40,476 copying hypothesis_agent/data_analysis_agent/update.py -> build/lib/hypothesis_agent/data_analysis_agent 2025-06-01T08:04:40,479 creating build/lib/hypothesis_agent/literature_review_agent/literature_processor 2025-06-01T08:04:40,480 copying hypothesis_agent/literature_review_agent/literature_processor/__init__.py -> build/lib/hypothesis_agent/literature_review_agent/literature_processor 2025-06-01T08:04:40,482 copying hypothesis_agent/literature_review_agent/literature_processor/extract_info.py -> build/lib/hypothesis_agent/literature_review_agent/literature_processor 2025-06-01T08:04:40,484 copying hypothesis_agent/literature_review_agent/literature_processor/summarize.py -> build/lib/hypothesis_agent/literature_review_agent/literature_processor 2025-06-01T08:04:40,486 copying hypothesis_agent/literature_review_agent/literature_processor/process_pdf.py -> build/lib/hypothesis_agent/literature_review_agent/literature_processor 2025-06-01T08:04:40,488 creating build/lib/hypogenic/algorithm 2025-06-01T08:04:40,489 copying hypogenic/algorithm/replace.py -> build/lib/hypogenic/algorithm 2025-06-01T08:04:40,492 copying hypogenic/algorithm/__init__.py -> build/lib/hypogenic/algorithm 2025-06-01T08:04:40,493 copying hypogenic/algorithm/summary_information.py -> build/lib/hypogenic/algorithm 2025-06-01T08:04:40,496 creating build/lib/hypogenic/LLM_wrapper 2025-06-01T08:04:40,497 copying hypogenic/LLM_wrapper/wrapper_utils.py -> build/lib/hypogenic/LLM_wrapper 2025-06-01T08:04:40,499 copying hypogenic/LLM_wrapper/claude.py -> build/lib/hypogenic/LLM_wrapper 2025-06-01T08:04:40,501 copying hypogenic/LLM_wrapper/__init__.py -> build/lib/hypogenic/LLM_wrapper 2025-06-01T08:04:40,503 copying hypogenic/LLM_wrapper/rate_limiter.py -> build/lib/hypogenic/LLM_wrapper 2025-06-01T08:04:40,505 copying hypogenic/LLM_wrapper/local.py -> build/lib/hypogenic/LLM_wrapper 2025-06-01T08:04:40,507 copying hypogenic/LLM_wrapper/base.py -> build/lib/hypogenic/LLM_wrapper 2025-06-01T08:04:40,509 copying hypogenic/LLM_wrapper/gpt.py -> build/lib/hypogenic/LLM_wrapper 2025-06-01T08:04:40,512 creating build/lib/hypogenic/algorithm/update 2025-06-01T08:04:40,513 copying hypogenic/algorithm/update/__init__.py -> build/lib/hypogenic/algorithm/update 2025-06-01T08:04:40,515 copying hypogenic/algorithm/update/sampling.py -> build/lib/hypogenic/algorithm/update 2025-06-01T08:04:40,517 copying hypogenic/algorithm/update/default.py -> build/lib/hypogenic/algorithm/update 2025-06-01T08:04:40,519 copying hypogenic/algorithm/update/base.py -> build/lib/hypogenic/algorithm/update 2025-06-01T08:04:40,522 creating build/lib/hypogenic/algorithm/generation 2025-06-01T08:04:40,523 copying hypogenic/algorithm/generation/utils.py -> build/lib/hypogenic/algorithm/generation 2025-06-01T08:04:40,525 copying hypogenic/algorithm/generation/__init__.py -> build/lib/hypogenic/algorithm/generation 2025-06-01T08:04:40,527 copying hypogenic/algorithm/generation/default.py -> build/lib/hypogenic/algorithm/generation 2025-06-01T08:04:40,529 copying hypogenic/algorithm/generation/base.py -> build/lib/hypogenic/algorithm/generation 2025-06-01T08:04:40,532 creating build/lib/hypogenic/algorithm/inference 2025-06-01T08:04:40,533 copying hypogenic/algorithm/inference/two_step_adaptive.py -> build/lib/hypogenic/algorithm/inference 2025-06-01T08:04:40,535 copying hypogenic/algorithm/inference/upperbound.py -> build/lib/hypogenic/algorithm/inference 2025-06-01T08:04:40,537 copying hypogenic/algorithm/inference/__init__.py -> build/lib/hypogenic/algorithm/inference 2025-06-01T08:04:40,539 copying hypogenic/algorithm/inference/filter_and_weight.py -> build/lib/hypogenic/algorithm/inference 2025-06-01T08:04:40,541 copying hypogenic/algorithm/inference/default.py -> build/lib/hypogenic/algorithm/inference 2025-06-01T08:04:40,543 copying hypogenic/algorithm/inference/one_step_adaptive.py -> build/lib/hypogenic/algorithm/inference 2025-06-01T08:04:40,546 copying hypogenic/algorithm/inference/base.py -> build/lib/hypogenic/algorithm/inference 2025-06-01T08:04:40,587 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-06-01T08:04:40,587 !! 2025-06-01T08:04:40,588 ******************************************************************************** 2025-06-01T08:04:40,589 Please avoid running ``setup.py`` directly. 2025-06-01T08:04:40,590 Instead, use pypa/build, pypa/installer or other 2025-06-01T08:04:40,590 standards-based tools. 2025-06-01T08:04:40,591 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-06-01T08:04:40,592 or your builds will no longer be supported. 2025-06-01T08:04:40,593 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-06-01T08:04:40,593 ******************************************************************************** 2025-06-01T08:04:40,595 !! 2025-06-01T08:04:40,595 self.initialize_options() 2025-06-01T08:04:40,617 installing to build/bdist.linux-armv7l/wheel 2025-06-01T08:04:40,617 running install 2025-06-01T08:04:40,641 running install_lib 2025-06-01T08:04:40,668 creating build/bdist.linux-armv7l/wheel 2025-06-01T08:04:40,670 creating build/bdist.linux-armv7l/wheel/hypothesis_agent 2025-06-01T08:04:40,671 copying build/lib/hypothesis_agent/utils.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent 2025-06-01T08:04:40,674 copying build/lib/hypothesis_agent/__init__.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent 2025-06-01T08:04:40,676 creating build/bdist.linux-armv7l/wheel/hypothesis_agent/literature_review_agent 2025-06-01T08:04:40,677 copying build/lib/hypothesis_agent/literature_review_agent/__init__.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/literature_review_agent 2025-06-01T08:04:40,679 creating build/bdist.linux-armv7l/wheel/hypothesis_agent/literature_review_agent/literature_processor 2025-06-01T08:04:40,680 copying build/lib/hypothesis_agent/literature_review_agent/literature_processor/__init__.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/literature_review_agent/literature_processor 2025-06-01T08:04:40,682 copying build/lib/hypothesis_agent/literature_review_agent/literature_processor/extract_info.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/literature_review_agent/literature_processor 2025-06-01T08:04:40,684 copying build/lib/hypothesis_agent/literature_review_agent/literature_processor/summarize.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/literature_review_agent/literature_processor 2025-06-01T08:04:40,685 copying build/lib/hypothesis_agent/literature_review_agent/literature_processor/process_pdf.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/literature_review_agent/literature_processor 2025-06-01T08:04:40,687 copying build/lib/hypothesis_agent/literature_review_agent/literature_review.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/literature_review_agent 2025-06-01T08:04:40,689 creating build/bdist.linux-armv7l/wheel/hypothesis_agent/data_analysis_agent 2025-06-01T08:04:40,690 copying build/lib/hypothesis_agent/data_analysis_agent/task.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/data_analysis_agent 2025-06-01T08:04:40,693 copying build/lib/hypothesis_agent/data_analysis_agent/union_generation.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/data_analysis_agent 2025-06-01T08:04:40,695 copying build/lib/hypothesis_agent/data_analysis_agent/utils.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/data_analysis_agent 2025-06-01T08:04:40,697 copying build/lib/hypothesis_agent/data_analysis_agent/__init__.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/data_analysis_agent 2025-06-01T08:04:40,699 copying build/lib/hypothesis_agent/data_analysis_agent/prompt.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/data_analysis_agent 2025-06-01T08:04:40,701 copying build/lib/hypothesis_agent/data_analysis_agent/generation.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/data_analysis_agent 2025-06-01T08:04:40,704 copying build/lib/hypothesis_agent/data_analysis_agent/summary_information.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/data_analysis_agent 2025-06-01T08:04:40,706 copying build/lib/hypothesis_agent/data_analysis_agent/inference.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/data_analysis_agent 2025-06-01T08:04:40,708 copying build/lib/hypothesis_agent/data_analysis_agent/update.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/data_analysis_agent 2025-06-01T08:04:40,711 creating build/bdist.linux-armv7l/wheel/hypogenic_cmd 2025-06-01T08:04:40,712 copying build/lib/hypogenic_cmd/__init__.py -> build/bdist.linux-armv7l/wheel/./hypogenic_cmd 2025-06-01T08:04:40,714 copying build/lib/hypogenic_cmd/generation.py -> build/bdist.linux-armv7l/wheel/./hypogenic_cmd 2025-06-01T08:04:40,716 copying build/lib/hypogenic_cmd/inference.py -> build/bdist.linux-armv7l/wheel/./hypogenic_cmd 2025-06-01T08:04:40,719 creating build/bdist.linux-armv7l/wheel/hypogenic 2025-06-01T08:04:40,720 copying build/lib/hypogenic/register.py -> build/bdist.linux-armv7l/wheel/./hypogenic 2025-06-01T08:04:40,722 copying build/lib/hypogenic/LLM_cache.py -> build/bdist.linux-armv7l/wheel/./hypogenic 2025-06-01T08:04:40,724 creating build/bdist.linux-armv7l/wheel/hypogenic/algorithm 2025-06-01T08:04:40,725 copying build/lib/hypogenic/algorithm/replace.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm 2025-06-01T08:04:40,728 creating build/bdist.linux-armv7l/wheel/hypogenic/algorithm/update 2025-06-01T08:04:40,729 copying build/lib/hypogenic/algorithm/update/__init__.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/update 2025-06-01T08:04:40,732 copying build/lib/hypogenic/algorithm/update/sampling.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/update 2025-06-01T08:04:40,734 copying build/lib/hypogenic/algorithm/update/default.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/update 2025-06-01T08:04:40,736 copying build/lib/hypogenic/algorithm/update/base.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/update 2025-06-01T08:04:40,739 creating build/bdist.linux-armv7l/wheel/hypogenic/algorithm/generation 2025-06-01T08:04:40,740 copying build/lib/hypogenic/algorithm/generation/utils.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/generation 2025-06-01T08:04:40,741 copying build/lib/hypogenic/algorithm/generation/__init__.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/generation 2025-06-01T08:04:40,743 copying build/lib/hypogenic/algorithm/generation/default.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/generation 2025-06-01T08:04:40,745 copying build/lib/hypogenic/algorithm/generation/base.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/generation 2025-06-01T08:04:40,748 copying build/lib/hypogenic/algorithm/__init__.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm 2025-06-01T08:04:40,749 copying build/lib/hypogenic/algorithm/summary_information.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm 2025-06-01T08:04:40,751 creating build/bdist.linux-armv7l/wheel/hypogenic/algorithm/inference 2025-06-01T08:04:40,752 copying build/lib/hypogenic/algorithm/inference/two_step_adaptive.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/inference 2025-06-01T08:04:40,754 copying build/lib/hypogenic/algorithm/inference/upperbound.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/inference 2025-06-01T08:04:40,757 copying build/lib/hypogenic/algorithm/inference/__init__.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/inference 2025-06-01T08:04:40,758 copying build/lib/hypogenic/algorithm/inference/filter_and_weight.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/inference 2025-06-01T08:04:40,761 copying build/lib/hypogenic/algorithm/inference/default.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/inference 2025-06-01T08:04:40,763 copying build/lib/hypogenic/algorithm/inference/one_step_adaptive.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/inference 2025-06-01T08:04:40,765 copying build/lib/hypogenic/algorithm/inference/base.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/inference 2025-06-01T08:04:40,767 copying build/lib/hypogenic/utils.py -> build/bdist.linux-armv7l/wheel/./hypogenic 2025-06-01T08:04:40,769 copying build/lib/hypogenic/__init__.py -> build/bdist.linux-armv7l/wheel/./hypogenic 2025-06-01T08:04:40,770 copying build/lib/hypogenic/prompt.py -> build/bdist.linux-armv7l/wheel/./hypogenic 2025-06-01T08:04:40,772 copying build/lib/hypogenic/tasks.py -> build/bdist.linux-armv7l/wheel/./hypogenic 2025-06-01T08:04:40,774 copying build/lib/hypogenic/logger_config.py -> build/bdist.linux-armv7l/wheel/./hypogenic 2025-06-01T08:04:40,776 copying build/lib/hypogenic/extract_label.py -> build/bdist.linux-armv7l/wheel/./hypogenic 2025-06-01T08:04:40,779 creating build/bdist.linux-armv7l/wheel/hypogenic/LLM_wrapper 2025-06-01T08:04:40,780 copying build/lib/hypogenic/LLM_wrapper/wrapper_utils.py -> build/bdist.linux-armv7l/wheel/./hypogenic/LLM_wrapper 2025-06-01T08:04:40,782 copying build/lib/hypogenic/LLM_wrapper/claude.py -> build/bdist.linux-armv7l/wheel/./hypogenic/LLM_wrapper 2025-06-01T08:04:40,784 copying build/lib/hypogenic/LLM_wrapper/__init__.py -> build/bdist.linux-armv7l/wheel/./hypogenic/LLM_wrapper 2025-06-01T08:04:40,786 copying build/lib/hypogenic/LLM_wrapper/rate_limiter.py -> build/bdist.linux-armv7l/wheel/./hypogenic/LLM_wrapper 2025-06-01T08:04:40,788 copying build/lib/hypogenic/LLM_wrapper/local.py -> build/bdist.linux-armv7l/wheel/./hypogenic/LLM_wrapper 2025-06-01T08:04:40,790 copying build/lib/hypogenic/LLM_wrapper/base.py -> build/bdist.linux-armv7l/wheel/./hypogenic/LLM_wrapper 2025-06-01T08:04:40,792 copying build/lib/hypogenic/LLM_wrapper/gpt.py -> build/bdist.linux-armv7l/wheel/./hypogenic/LLM_wrapper 2025-06-01T08:04:40,794 creating build/bdist.linux-armv7l/wheel/IO_prompting 2025-06-01T08:04:40,795 copying build/lib/IO_prompting/__init__.py -> build/bdist.linux-armv7l/wheel/./IO_prompting 2025-06-01T08:04:40,797 copying build/lib/IO_prompting/prompt.py -> build/bdist.linux-armv7l/wheel/./IO_prompting 2025-06-01T08:04:40,799 copying build/lib/IO_prompting/generation.py -> build/bdist.linux-armv7l/wheel/./IO_prompting 2025-06-01T08:04:40,801 copying build/lib/IO_prompting/update.py -> build/bdist.linux-armv7l/wheel/./IO_prompting 2025-06-01T08:04:40,803 running install_egg_info 2025-06-01T08:04:40,838 running egg_info 2025-06-01T08:04:40,866 writing hypogenic.egg-info/PKG-INFO 2025-06-01T08:04:40,870 writing dependency_links to hypogenic.egg-info/dependency_links.txt 2025-06-01T08:04:40,871 writing entry points to hypogenic.egg-info/entry_points.txt 2025-06-01T08:04:40,873 writing requirements to hypogenic.egg-info/requires.txt 2025-06-01T08:04:40,874 writing top-level names to hypogenic.egg-info/top_level.txt 2025-06-01T08:04:40,914 reading manifest file 'hypogenic.egg-info/SOURCES.txt' 2025-06-01T08:04:40,919 reading manifest template 'MANIFEST.in' 2025-06-01T08:04:40,920 adding license file 'LICENSE' 2025-06-01T08:04:40,925 writing manifest file 'hypogenic.egg-info/SOURCES.txt' 2025-06-01T08:04:40,927 Copying hypogenic.egg-info to build/bdist.linux-armv7l/wheel/./hypogenic-0.3.1-py3.11.egg-info 2025-06-01T08:04:40,938 running install_scripts 2025-06-01T08:04:40,952 creating build/bdist.linux-armv7l/wheel/hypogenic-0.3.1.dist-info/WHEEL 2025-06-01T08:04:40,955 creating '/tmp/pip-wheel-2slq7ukv/hypogenic-0.3.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-06-01T08:04:40,957 adding 'IO_prompting/__init__.py' 2025-06-01T08:04:40,959 adding 'IO_prompting/generation.py' 2025-06-01T08:04:40,960 adding 'IO_prompting/prompt.py' 2025-06-01T08:04:40,962 adding 'IO_prompting/update.py' 2025-06-01T08:04:40,964 adding 'hypogenic/LLM_cache.py' 2025-06-01T08:04:40,966 adding 'hypogenic/__init__.py' 2025-06-01T08:04:40,967 adding 'hypogenic/extract_label.py' 2025-06-01T08:04:40,969 adding 'hypogenic/logger_config.py' 2025-06-01T08:04:40,971 adding 'hypogenic/prompt.py' 2025-06-01T08:04:40,972 adding 'hypogenic/register.py' 2025-06-01T08:04:40,974 adding 'hypogenic/tasks.py' 2025-06-01T08:04:40,975 adding 'hypogenic/utils.py' 2025-06-01T08:04:40,977 adding 'hypogenic/LLM_wrapper/__init__.py' 2025-06-01T08:04:40,978 adding 'hypogenic/LLM_wrapper/base.py' 2025-06-01T08:04:40,980 adding 'hypogenic/LLM_wrapper/claude.py' 2025-06-01T08:04:40,981 adding 'hypogenic/LLM_wrapper/gpt.py' 2025-06-01T08:04:40,983 adding 'hypogenic/LLM_wrapper/local.py' 2025-06-01T08:04:40,984 adding 'hypogenic/LLM_wrapper/rate_limiter.py' 2025-06-01T08:04:40,986 adding 'hypogenic/LLM_wrapper/wrapper_utils.py' 2025-06-01T08:04:40,987 adding 'hypogenic/algorithm/__init__.py' 2025-06-01T08:04:40,989 adding 'hypogenic/algorithm/replace.py' 2025-06-01T08:04:40,990 adding 'hypogenic/algorithm/summary_information.py' 2025-06-01T08:04:40,992 adding 'hypogenic/algorithm/generation/__init__.py' 2025-06-01T08:04:40,993 adding 'hypogenic/algorithm/generation/base.py' 2025-06-01T08:04:40,995 adding 'hypogenic/algorithm/generation/default.py' 2025-06-01T08:04:40,996 adding 'hypogenic/algorithm/generation/utils.py' 2025-06-01T08:04:40,998 adding 'hypogenic/algorithm/inference/__init__.py' 2025-06-01T08:04:40,999 adding 'hypogenic/algorithm/inference/base.py' 2025-06-01T08:04:41,000 adding 'hypogenic/algorithm/inference/default.py' 2025-06-01T08:04:41,002 adding 'hypogenic/algorithm/inference/filter_and_weight.py' 2025-06-01T08:04:41,004 adding 'hypogenic/algorithm/inference/one_step_adaptive.py' 2025-06-01T08:04:41,005 adding 'hypogenic/algorithm/inference/two_step_adaptive.py' 2025-06-01T08:04:41,007 adding 'hypogenic/algorithm/inference/upperbound.py' 2025-06-01T08:04:41,008 adding 'hypogenic/algorithm/update/__init__.py' 2025-06-01T08:04:41,010 adding 'hypogenic/algorithm/update/base.py' 2025-06-01T08:04:41,011 adding 'hypogenic/algorithm/update/default.py' 2025-06-01T08:04:41,013 adding 'hypogenic/algorithm/update/sampling.py' 2025-06-01T08:04:41,016 adding 'hypogenic-0.3.1.dist-info/licenses/LICENSE' 2025-06-01T08:04:41,017 adding 'hypogenic_cmd/__init__.py' 2025-06-01T08:04:41,019 adding 'hypogenic_cmd/generation.py' 2025-06-01T08:04:41,020 adding 'hypogenic_cmd/inference.py' 2025-06-01T08:04:41,022 adding 'hypothesis_agent/__init__.py' 2025-06-01T08:04:41,023 adding 'hypothesis_agent/utils.py' 2025-06-01T08:04:41,025 adding 'hypothesis_agent/data_analysis_agent/__init__.py' 2025-06-01T08:04:41,027 adding 'hypothesis_agent/data_analysis_agent/generation.py' 2025-06-01T08:04:41,028 adding 'hypothesis_agent/data_analysis_agent/inference.py' 2025-06-01T08:04:41,030 adding 'hypothesis_agent/data_analysis_agent/prompt.py' 2025-06-01T08:04:41,031 adding 'hypothesis_agent/data_analysis_agent/summary_information.py' 2025-06-01T08:04:41,032 adding 'hypothesis_agent/data_analysis_agent/task.py' 2025-06-01T08:04:41,034 adding 'hypothesis_agent/data_analysis_agent/union_generation.py' 2025-06-01T08:04:41,036 adding 'hypothesis_agent/data_analysis_agent/update.py' 2025-06-01T08:04:41,037 adding 'hypothesis_agent/data_analysis_agent/utils.py' 2025-06-01T08:04:41,039 adding 'hypothesis_agent/literature_review_agent/__init__.py' 2025-06-01T08:04:41,040 adding 'hypothesis_agent/literature_review_agent/literature_review.py' 2025-06-01T08:04:41,042 adding 'hypothesis_agent/literature_review_agent/literature_processor/__init__.py' 2025-06-01T08:04:41,043 adding 'hypothesis_agent/literature_review_agent/literature_processor/extract_info.py' 2025-06-01T08:04:41,044 adding 'hypothesis_agent/literature_review_agent/literature_processor/process_pdf.py' 2025-06-01T08:04:41,046 adding 'hypothesis_agent/literature_review_agent/literature_processor/summarize.py' 2025-06-01T08:04:41,048 adding 'hypogenic-0.3.1.dist-info/METADATA' 2025-06-01T08:04:41,049 adding 'hypogenic-0.3.1.dist-info/WHEEL' 2025-06-01T08:04:41,050 adding 'hypogenic-0.3.1.dist-info/entry_points.txt' 2025-06-01T08:04:41,051 adding 'hypogenic-0.3.1.dist-info/top_level.txt' 2025-06-01T08:04:41,052 adding 'hypogenic-0.3.1.dist-info/RECORD' 2025-06-01T08:04:41,055 removing build/bdist.linux-armv7l/wheel 2025-06-01T08:04:41,177 Building wheel for hypogenic (setup.py): finished with status 'done' 2025-06-01T08:04:41,181 Created wheel for hypogenic: filename=hypogenic-0.3.1-py3-none-any.whl size=78295 sha256=3c77a12efb8ae7f3b2f05a266473281a10bea6680c4b0563fbc9f45daffd1552 2025-06-01T08:04:41,182 Stored in directory: /tmp/pip-ephem-wheel-cache-4170vo4b/wheels/38/28/c0/915da4d263e0fa329825059b720088fe9cadf33a7b581d9865 2025-06-01T08:04:41,197 Successfully built hypogenic 2025-06-01T08:04:41,202 Removed build tracker: '/tmp/pip-build-tracker-l2dr416c'