2025-06-01T08:05:54,725 Created temporary directory: /tmp/pip-build-tracker-2yjn1hz7 2025-06-01T08:05:54,726 Initialized build tracking at /tmp/pip-build-tracker-2yjn1hz7 2025-06-01T08:05:54,726 Created build tracker: /tmp/pip-build-tracker-2yjn1hz7 2025-06-01T08:05:54,727 Entered build tracker: /tmp/pip-build-tracker-2yjn1hz7 2025-06-01T08:05:54,727 Created temporary directory: /tmp/pip-wheel-zr9qavc1 2025-06-01T08:05:54,731 Created temporary directory: /tmp/pip-ephem-wheel-cache-rvvioftz 2025-06-01T08:05:54,778 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-06-01T08:05:54,780 2 location(s) to search for versions of hypogenic: 2025-06-01T08:05:54,780 * https://pypi.org/simple/hypogenic/ 2025-06-01T08:05:54,780 * https://www.piwheels.org/simple/hypogenic/ 2025-06-01T08:05:54,781 Fetching project page and analyzing links: https://pypi.org/simple/hypogenic/ 2025-06-01T08:05:54,782 Getting page https://pypi.org/simple/hypogenic/ 2025-06-01T08:05:54,783 Found index url https://pypi.org/simple/ 2025-06-01T08:05:54,932 Fetched page https://pypi.org/simple/hypogenic/ as application/vnd.pypi.simple.v1+json 2025-06-01T08:05:54,935 Skipping link: No binaries permitted for hypogenic: https://files.pythonhosted.org/packages/21/da/8572dec0493164b4573f41bb1ace32647eebd404c4f02b7ffacd5836a33b/hypogenic-0.0.1-py2.py3-none-any.whl (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.9) 2025-06-01T08:05:54,935 Skipping link: No binaries permitted for hypogenic: https://files.pythonhosted.org/packages/f4/db/1769d8954270750cff6e07531c74415bf0d9db4d88c8d90ab2511f1e8da3/hypogenic-0.1.1-py3-none-any.whl (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.9) 2025-06-01T08:05:54,936 Found link https://files.pythonhosted.org/packages/17/b4/a65e31064d7f798aaddf13757e6853c22dacebb069c38c04d1eabf08702d/hypogenic-0.1.1.tar.gz (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.9), version: 0.1.1 2025-06-01T08:05:54,937 Skipping link: No binaries permitted for hypogenic: https://files.pythonhosted.org/packages/d3/be/269b7faadb4ab682ea292a0288ef2e027bdde5358bed6cce12803535b9f2/hypogenic-0.2.2-py3-none-any.whl (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.10) 2025-06-01T08:05:54,938 Found link https://files.pythonhosted.org/packages/d9/f8/119407a8c78591642b094d492e1b8183f85f0e82497da6ddd777498b174f/hypogenic-0.2.2.tar.gz (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.10), version: 0.2.2 2025-06-01T08:05:54,938 Skipping link: No binaries permitted for hypogenic: https://files.pythonhosted.org/packages/56/ad/ae6707840022069cb4cff0e1e3de35bdcc22691c54800979e1ba6bd0a972/hypogenic-0.3.1-py3-none-any.whl (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.10) 2025-06-01T08:05:54,939 Found link https://files.pythonhosted.org/packages/82/1c/735665540ffa59bbd99edeae2b6b217ce11d09c004cfb200a65424abf850/hypogenic-0.3.1.tar.gz (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.10), version: 0.3.1 2025-06-01T08:05:54,940 Skipping link: No binaries permitted for hypogenic: https://files.pythonhosted.org/packages/f0/5c/419a7009530c7a281cfc5a8e75cef9a9108bb4ab68fdcbbc77894c09f004/hypogenic-0.3.2-py3-none-any.whl (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.10) 2025-06-01T08:05:54,940 Found link https://files.pythonhosted.org/packages/ae/42/c0fcc75e33b49421edeebb8b6957bedbe021ed3a7d4106e6e2c6807429d3/hypogenic-0.3.2.tar.gz (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.10), version: 0.3.2 2025-06-01T08:05:54,941 Skipping link: No binaries permitted for hypogenic: https://files.pythonhosted.org/packages/5e/78/1b8ec74bc431e62173684ad36b3151ed334a5b47f0591a5ffa411cf35bcf/hypogenic-0.3.3-py3-none-any.whl (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.10) 2025-06-01T08:05:54,942 Found link https://files.pythonhosted.org/packages/48/80/85ff70458ed39bcdd8592f9dda389e9fc57ec58b127e1b7364a3314ad4b0/hypogenic-0.3.3.tar.gz (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.10), version: 0.3.3 2025-06-01T08:05:54,942 Skipping link: No binaries permitted for hypogenic: https://files.pythonhosted.org/packages/93/5d/47d1efc0bfee85da4c7e4b1300ece10cb416f24f6edc1e70eb0850b604fc/hypogenic-0.3.4-py3-none-any.whl (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.10) 2025-06-01T08:05:54,943 Found link https://files.pythonhosted.org/packages/69/9b/ecbaf2131d5ee385518fc1f2d826946a81d0a8a7d5207aa279c7c0a8b5da/hypogenic-0.3.4.tar.gz (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.10), version: 0.3.4 2025-06-01T08:05:54,944 Skipping link: No binaries permitted for hypogenic: https://files.pythonhosted.org/packages/91/00/a3d2b9d626832ad0b7b7807a6795877ab98875a36d27035a4759a84b248b/hypogenic-0.3.5-py3-none-any.whl (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.10) 2025-06-01T08:05:54,944 Found link https://files.pythonhosted.org/packages/b1/a3/9abb3170ccf2337f9e7485d11f6be66a7def96b0438a9dbfb398b82f3e86/hypogenic-0.3.5.tar.gz (from https://pypi.org/simple/hypogenic/) (requires-python:>=3.10), version: 0.3.5 2025-06-01T08:05:54,945 Fetching project page and analyzing links: https://www.piwheels.org/simple/hypogenic/ 2025-06-01T08:05:54,945 Getting page https://www.piwheels.org/simple/hypogenic/ 2025-06-01T08:05:54,946 Found index url https://www.piwheels.org/simple/ 2025-06-01T08:05:55,105 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/hypogenic/ 2025-06-01T08:05:55,756 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/hypogenic/ 2025-06-01T08:05:56,907 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/hypogenic/ 2025-06-01T08:05:59,122 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/hypogenic/ 2025-06-01T08:06:03,346 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/hypogenic/ 2025-06-01T08:06:03,563 Could not fetch URL https://www.piwheels.org/simple/hypogenic/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/hypogenic/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping 2025-06-01T08:06:03,564 Skipping link: not a file: https://www.piwheels.org/simple/hypogenic/ 2025-06-01T08:06:03,565 Skipping link: not a file: https://pypi.org/simple/hypogenic/ 2025-06-01T08:06:03,583 Given no hashes to check 1 links for project 'hypogenic': discarding no candidates 2025-06-01T08:06:03,585 Collecting hypogenic==0.3.2 2025-06-01T08:06:03,587 Created temporary directory: /tmp/pip-unpack-unpeqnre 2025-06-01T08:06:03,814 Downloading hypogenic-0.3.2.tar.gz (54 kB) 2025-06-01T08:06:04,025 Added hypogenic==0.3.2 from https://files.pythonhosted.org/packages/ae/42/c0fcc75e33b49421edeebb8b6957bedbe021ed3a7d4106e6e2c6807429d3/hypogenic-0.3.2.tar.gz to build tracker '/tmp/pip-build-tracker-2yjn1hz7' 2025-06-01T08:06:04,027 Running setup.py (path:/tmp/pip-wheel-zr9qavc1/hypogenic_3d31ebe253154b158f5d7f1497d3b966/setup.py) egg_info for package hypogenic 2025-06-01T08:06:04,028 Created temporary directory: /tmp/pip-pip-egg-info-qdhaicok 2025-06-01T08:06:04,029 Preparing metadata (setup.py): started 2025-06-01T08:06:04,030 Running command python setup.py egg_info 2025-06-01T08:06:04,901 running egg_info 2025-06-01T08:06:04,927 creating /tmp/pip-pip-egg-info-qdhaicok/hypogenic.egg-info 2025-06-01T08:06:04,928 writing /tmp/pip-pip-egg-info-qdhaicok/hypogenic.egg-info/PKG-INFO 2025-06-01T08:06:04,932 writing dependency_links to /tmp/pip-pip-egg-info-qdhaicok/hypogenic.egg-info/dependency_links.txt 2025-06-01T08:06:04,934 writing entry points to /tmp/pip-pip-egg-info-qdhaicok/hypogenic.egg-info/entry_points.txt 2025-06-01T08:06:04,935 writing requirements to /tmp/pip-pip-egg-info-qdhaicok/hypogenic.egg-info/requires.txt 2025-06-01T08:06:04,936 writing top-level names to /tmp/pip-pip-egg-info-qdhaicok/hypogenic.egg-info/top_level.txt 2025-06-01T08:06:04,938 writing manifest file '/tmp/pip-pip-egg-info-qdhaicok/hypogenic.egg-info/SOURCES.txt' 2025-06-01T08:06:05,033 reading manifest file '/tmp/pip-pip-egg-info-qdhaicok/hypogenic.egg-info/SOURCES.txt' 2025-06-01T08:06:05,034 reading manifest template 'MANIFEST.in' 2025-06-01T08:06:05,035 adding license file 'LICENSE' 2025-06-01T08:06:05,039 writing manifest file '/tmp/pip-pip-egg-info-qdhaicok/hypogenic.egg-info/SOURCES.txt' 2025-06-01T08:06:05,143 Preparing metadata (setup.py): finished with status 'done' 2025-06-01T08:06:05,148 Source in /tmp/pip-wheel-zr9qavc1/hypogenic_3d31ebe253154b158f5d7f1497d3b966 has version 0.3.2, which satisfies requirement hypogenic==0.3.2 from https://files.pythonhosted.org/packages/ae/42/c0fcc75e33b49421edeebb8b6957bedbe021ed3a7d4106e6e2c6807429d3/hypogenic-0.3.2.tar.gz 2025-06-01T08:06:05,149 Removed hypogenic==0.3.2 from https://files.pythonhosted.org/packages/ae/42/c0fcc75e33b49421edeebb8b6957bedbe021ed3a7d4106e6e2c6807429d3/hypogenic-0.3.2.tar.gz from build tracker '/tmp/pip-build-tracker-2yjn1hz7' 2025-06-01T08:06:05,162 Created temporary directory: /tmp/pip-unpack-y4p0_gpu 2025-06-01T08:06:05,163 Created temporary directory: /tmp/pip-unpack-a20rpo42 2025-06-01T08:06:05,163 Building wheels for collected packages: hypogenic 2025-06-01T08:06:05,167 Created temporary directory: /tmp/pip-wheel-t4xfzq00 2025-06-01T08:06:05,168 DEPRECATION: Building 'hypogenic' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'hypogenic'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-06-01T08:06:05,170 Building wheel for hypogenic (setup.py): started 2025-06-01T08:06:05,171 Destination directory: /tmp/pip-wheel-t4xfzq00 2025-06-01T08:06:05,171 Running command python setup.py bdist_wheel 2025-06-01T08:06:05,991 running bdist_wheel 2025-06-01T08:06:06,117 running build 2025-06-01T08:06:06,118 running build_py 2025-06-01T08:06:06,147 creating build/lib/hypogenic 2025-06-01T08:06:06,149 copying hypogenic/tasks.py -> build/lib/hypogenic 2025-06-01T08:06:06,151 copying hypogenic/utils.py -> build/lib/hypogenic 2025-06-01T08:06:06,154 copying hypogenic/LLM_cache.py -> build/lib/hypogenic 2025-06-01T08:06:06,157 copying hypogenic/extract_label.py -> build/lib/hypogenic 2025-06-01T08:06:06,160 copying hypogenic/register.py -> build/lib/hypogenic 2025-06-01T08:06:06,162 copying hypogenic/prompt.py -> build/lib/hypogenic 2025-06-01T08:06:06,165 copying hypogenic/logger_config.py -> build/lib/hypogenic 2025-06-01T08:06:06,167 copying hypogenic/__init__.py -> build/lib/hypogenic 2025-06-01T08:06:06,169 creating build/lib/hypothesis_agent 2025-06-01T08:06:06,170 copying hypothesis_agent/utils.py -> build/lib/hypothesis_agent 2025-06-01T08:06:06,172 copying hypothesis_agent/__init__.py -> build/lib/hypothesis_agent 2025-06-01T08:06:06,174 creating build/lib/hypogenic_cmd 2025-06-01T08:06:06,175 copying hypogenic_cmd/inference.py -> build/lib/hypogenic_cmd 2025-06-01T08:06:06,178 copying hypogenic_cmd/generation.py -> build/lib/hypogenic_cmd 2025-06-01T08:06:06,181 copying hypogenic_cmd/__init__.py -> build/lib/hypogenic_cmd 2025-06-01T08:06:06,183 creating build/lib/IO_prompting 2025-06-01T08:06:06,184 copying IO_prompting/prompt.py -> build/lib/IO_prompting 2025-06-01T08:06:06,186 copying IO_prompting/update.py -> build/lib/IO_prompting 2025-06-01T08:06:06,188 copying IO_prompting/generation.py -> build/lib/IO_prompting 2025-06-01T08:06:06,191 copying IO_prompting/__init__.py -> build/lib/IO_prompting 2025-06-01T08:06:06,193 creating build/lib/hypogenic/algorithm 2025-06-01T08:06:06,194 copying hypogenic/algorithm/replace.py -> build/lib/hypogenic/algorithm 2025-06-01T08:06:06,196 copying hypogenic/algorithm/summary_information.py -> build/lib/hypogenic/algorithm 2025-06-01T08:06:06,198 copying hypogenic/algorithm/__init__.py -> build/lib/hypogenic/algorithm 2025-06-01T08:06:06,200 creating build/lib/hypogenic/LLM_wrapper 2025-06-01T08:06:06,201 copying hypogenic/LLM_wrapper/claude.py -> build/lib/hypogenic/LLM_wrapper 2025-06-01T08:06:06,203 copying hypogenic/LLM_wrapper/base.py -> build/lib/hypogenic/LLM_wrapper 2025-06-01T08:06:06,205 copying hypogenic/LLM_wrapper/local.py -> build/lib/hypogenic/LLM_wrapper 2025-06-01T08:06:06,207 copying hypogenic/LLM_wrapper/rate_limiter.py -> build/lib/hypogenic/LLM_wrapper 2025-06-01T08:06:06,209 copying hypogenic/LLM_wrapper/wrapper_utils.py -> build/lib/hypogenic/LLM_wrapper 2025-06-01T08:06:06,211 copying hypogenic/LLM_wrapper/__init__.py -> build/lib/hypogenic/LLM_wrapper 2025-06-01T08:06:06,213 copying hypogenic/LLM_wrapper/gpt.py -> build/lib/hypogenic/LLM_wrapper 2025-06-01T08:06:06,215 creating build/lib/hypogenic/algorithm/generation 2025-06-01T08:06:06,216 copying hypogenic/algorithm/generation/default.py -> build/lib/hypogenic/algorithm/generation 2025-06-01T08:06:06,219 copying hypogenic/algorithm/generation/base.py -> build/lib/hypogenic/algorithm/generation 2025-06-01T08:06:06,221 copying hypogenic/algorithm/generation/utils.py -> build/lib/hypogenic/algorithm/generation 2025-06-01T08:06:06,223 copying hypogenic/algorithm/generation/__init__.py -> build/lib/hypogenic/algorithm/generation 2025-06-01T08:06:06,226 creating build/lib/hypogenic/algorithm/update 2025-06-01T08:06:06,227 copying hypogenic/algorithm/update/default.py -> build/lib/hypogenic/algorithm/update 2025-06-01T08:06:06,230 copying hypogenic/algorithm/update/base.py -> build/lib/hypogenic/algorithm/update 2025-06-01T08:06:06,233 copying hypogenic/algorithm/update/__init__.py -> build/lib/hypogenic/algorithm/update 2025-06-01T08:06:06,234 copying hypogenic/algorithm/update/sampling.py -> build/lib/hypogenic/algorithm/update 2025-06-01T08:06:06,238 creating build/lib/hypogenic/algorithm/inference 2025-06-01T08:06:06,239 copying hypogenic/algorithm/inference/default.py -> build/lib/hypogenic/algorithm/inference 2025-06-01T08:06:06,241 copying hypogenic/algorithm/inference/one_step_adaptive.py -> build/lib/hypogenic/algorithm/inference 2025-06-01T08:06:06,244 copying hypogenic/algorithm/inference/base.py -> build/lib/hypogenic/algorithm/inference 2025-06-01T08:06:06,246 copying hypogenic/algorithm/inference/two_step_adaptive.py -> build/lib/hypogenic/algorithm/inference 2025-06-01T08:06:06,248 copying hypogenic/algorithm/inference/__init__.py -> build/lib/hypogenic/algorithm/inference 2025-06-01T08:06:06,250 copying hypogenic/algorithm/inference/filter_and_weight.py -> build/lib/hypogenic/algorithm/inference 2025-06-01T08:06:06,252 copying hypogenic/algorithm/inference/upperbound.py -> build/lib/hypogenic/algorithm/inference 2025-06-01T08:06:06,255 creating build/lib/hypothesis_agent/data_analysis_agent 2025-06-01T08:06:06,256 copying hypothesis_agent/data_analysis_agent/inference.py -> build/lib/hypothesis_agent/data_analysis_agent 2025-06-01T08:06:06,258 copying hypothesis_agent/data_analysis_agent/union_generation.py -> build/lib/hypothesis_agent/data_analysis_agent 2025-06-01T08:06:06,261 copying hypothesis_agent/data_analysis_agent/utils.py -> build/lib/hypothesis_agent/data_analysis_agent 2025-06-01T08:06:06,263 copying hypothesis_agent/data_analysis_agent/task.py -> build/lib/hypothesis_agent/data_analysis_agent 2025-06-01T08:06:06,266 copying hypothesis_agent/data_analysis_agent/prompt.py -> build/lib/hypothesis_agent/data_analysis_agent 2025-06-01T08:06:06,268 copying hypothesis_agent/data_analysis_agent/update.py -> build/lib/hypothesis_agent/data_analysis_agent 2025-06-01T08:06:06,271 copying hypothesis_agent/data_analysis_agent/summary_information.py -> build/lib/hypothesis_agent/data_analysis_agent 2025-06-01T08:06:06,273 copying hypothesis_agent/data_analysis_agent/generation.py -> build/lib/hypothesis_agent/data_analysis_agent 2025-06-01T08:06:06,275 copying hypothesis_agent/data_analysis_agent/__init__.py -> build/lib/hypothesis_agent/data_analysis_agent 2025-06-01T08:06:06,277 creating build/lib/hypothesis_agent/literature_review_agent 2025-06-01T08:06:06,278 copying hypothesis_agent/literature_review_agent/literature_review.py -> build/lib/hypothesis_agent/literature_review_agent 2025-06-01T08:06:06,280 copying hypothesis_agent/literature_review_agent/__init__.py -> build/lib/hypothesis_agent/literature_review_agent 2025-06-01T08:06:06,282 creating build/lib/hypothesis_agent/literature_review_agent/literature_processor 2025-06-01T08:06:06,283 copying hypothesis_agent/literature_review_agent/literature_processor/summarize.py -> build/lib/hypothesis_agent/literature_review_agent/literature_processor 2025-06-01T08:06:06,285 copying hypothesis_agent/literature_review_agent/literature_processor/extract_info.py -> build/lib/hypothesis_agent/literature_review_agent/literature_processor 2025-06-01T08:06:06,286 copying hypothesis_agent/literature_review_agent/literature_processor/process_pdf.py -> build/lib/hypothesis_agent/literature_review_agent/literature_processor 2025-06-01T08:06:06,288 copying hypothesis_agent/literature_review_agent/literature_processor/__init__.py -> build/lib/hypothesis_agent/literature_review_agent/literature_processor 2025-06-01T08:06:06,325 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-06-01T08:06:06,326 !! 2025-06-01T08:06:06,327 ******************************************************************************** 2025-06-01T08:06:06,327 Please avoid running ``setup.py`` directly. 2025-06-01T08:06:06,328 Instead, use pypa/build, pypa/installer or other 2025-06-01T08:06:06,328 standards-based tools. 2025-06-01T08:06:06,329 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-06-01T08:06:06,330 or your builds will no longer be supported. 2025-06-01T08:06:06,331 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-06-01T08:06:06,331 ******************************************************************************** 2025-06-01T08:06:06,333 !! 2025-06-01T08:06:06,333 self.initialize_options() 2025-06-01T08:06:06,353 installing to build/bdist.linux-armv7l/wheel 2025-06-01T08:06:06,354 running install 2025-06-01T08:06:06,377 running install_lib 2025-06-01T08:06:06,403 creating build/bdist.linux-armv7l/wheel 2025-06-01T08:06:06,406 creating build/bdist.linux-armv7l/wheel/hypogenic 2025-06-01T08:06:06,407 creating build/bdist.linux-armv7l/wheel/hypogenic/algorithm 2025-06-01T08:06:06,409 creating build/bdist.linux-armv7l/wheel/hypogenic/algorithm/generation 2025-06-01T08:06:06,410 copying build/lib/hypogenic/algorithm/generation/default.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/generation 2025-06-01T08:06:06,413 copying build/lib/hypogenic/algorithm/generation/base.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/generation 2025-06-01T08:06:06,415 copying build/lib/hypogenic/algorithm/generation/utils.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/generation 2025-06-01T08:06:06,417 copying build/lib/hypogenic/algorithm/generation/__init__.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/generation 2025-06-01T08:06:06,420 creating build/bdist.linux-armv7l/wheel/hypogenic/algorithm/update 2025-06-01T08:06:06,420 copying build/lib/hypogenic/algorithm/update/default.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/update 2025-06-01T08:06:06,423 copying build/lib/hypogenic/algorithm/update/base.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/update 2025-06-01T08:06:06,425 copying build/lib/hypogenic/algorithm/update/__init__.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/update 2025-06-01T08:06:06,426 copying build/lib/hypogenic/algorithm/update/sampling.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/update 2025-06-01T08:06:06,429 creating build/bdist.linux-armv7l/wheel/hypogenic/algorithm/inference 2025-06-01T08:06:06,430 copying build/lib/hypogenic/algorithm/inference/default.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/inference 2025-06-01T08:06:06,432 copying build/lib/hypogenic/algorithm/inference/one_step_adaptive.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/inference 2025-06-01T08:06:06,434 copying build/lib/hypogenic/algorithm/inference/base.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/inference 2025-06-01T08:06:06,436 copying build/lib/hypogenic/algorithm/inference/two_step_adaptive.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/inference 2025-06-01T08:06:06,438 copying build/lib/hypogenic/algorithm/inference/__init__.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/inference 2025-06-01T08:06:06,440 copying build/lib/hypogenic/algorithm/inference/filter_and_weight.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/inference 2025-06-01T08:06:06,443 copying build/lib/hypogenic/algorithm/inference/upperbound.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm/inference 2025-06-01T08:06:06,445 copying build/lib/hypogenic/algorithm/replace.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm 2025-06-01T08:06:06,448 copying build/lib/hypogenic/algorithm/summary_information.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm 2025-06-01T08:06:06,449 copying build/lib/hypogenic/algorithm/__init__.py -> build/bdist.linux-armv7l/wheel/./hypogenic/algorithm 2025-06-01T08:06:06,451 copying build/lib/hypogenic/tasks.py -> build/bdist.linux-armv7l/wheel/./hypogenic 2025-06-01T08:06:06,453 copying build/lib/hypogenic/utils.py -> build/bdist.linux-armv7l/wheel/./hypogenic 2025-06-01T08:06:06,455 copying build/lib/hypogenic/LLM_cache.py -> build/bdist.linux-armv7l/wheel/./hypogenic 2025-06-01T08:06:06,457 copying build/lib/hypogenic/extract_label.py -> build/bdist.linux-armv7l/wheel/./hypogenic 2025-06-01T08:06:06,459 copying build/lib/hypogenic/register.py -> build/bdist.linux-armv7l/wheel/./hypogenic 2025-06-01T08:06:06,460 copying build/lib/hypogenic/prompt.py -> build/bdist.linux-armv7l/wheel/./hypogenic 2025-06-01T08:06:06,463 copying build/lib/hypogenic/logger_config.py -> build/bdist.linux-armv7l/wheel/./hypogenic 2025-06-01T08:06:06,464 copying build/lib/hypogenic/__init__.py -> build/bdist.linux-armv7l/wheel/./hypogenic 2025-06-01T08:06:06,466 creating build/bdist.linux-armv7l/wheel/hypogenic/LLM_wrapper 2025-06-01T08:06:06,468 copying build/lib/hypogenic/LLM_wrapper/claude.py -> build/bdist.linux-armv7l/wheel/./hypogenic/LLM_wrapper 2025-06-01T08:06:06,470 copying build/lib/hypogenic/LLM_wrapper/base.py -> build/bdist.linux-armv7l/wheel/./hypogenic/LLM_wrapper 2025-06-01T08:06:06,472 copying build/lib/hypogenic/LLM_wrapper/local.py -> build/bdist.linux-armv7l/wheel/./hypogenic/LLM_wrapper 2025-06-01T08:06:06,474 copying build/lib/hypogenic/LLM_wrapper/rate_limiter.py -> build/bdist.linux-armv7l/wheel/./hypogenic/LLM_wrapper 2025-06-01T08:06:06,476 copying build/lib/hypogenic/LLM_wrapper/wrapper_utils.py -> build/bdist.linux-armv7l/wheel/./hypogenic/LLM_wrapper 2025-06-01T08:06:06,477 copying build/lib/hypogenic/LLM_wrapper/__init__.py -> build/bdist.linux-armv7l/wheel/./hypogenic/LLM_wrapper 2025-06-01T08:06:06,479 copying build/lib/hypogenic/LLM_wrapper/gpt.py -> build/bdist.linux-armv7l/wheel/./hypogenic/LLM_wrapper 2025-06-01T08:06:06,482 creating build/bdist.linux-armv7l/wheel/hypothesis_agent 2025-06-01T08:06:06,483 copying build/lib/hypothesis_agent/utils.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent 2025-06-01T08:06:06,485 creating build/bdist.linux-armv7l/wheel/hypothesis_agent/data_analysis_agent 2025-06-01T08:06:06,486 copying build/lib/hypothesis_agent/data_analysis_agent/inference.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/data_analysis_agent 2025-06-01T08:06:06,489 copying build/lib/hypothesis_agent/data_analysis_agent/union_generation.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/data_analysis_agent 2025-06-01T08:06:06,491 copying build/lib/hypothesis_agent/data_analysis_agent/utils.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/data_analysis_agent 2025-06-01T08:06:06,493 copying build/lib/hypothesis_agent/data_analysis_agent/task.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/data_analysis_agent 2025-06-01T08:06:06,495 copying build/lib/hypothesis_agent/data_analysis_agent/prompt.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/data_analysis_agent 2025-06-01T08:06:06,497 copying build/lib/hypothesis_agent/data_analysis_agent/update.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/data_analysis_agent 2025-06-01T08:06:06,500 copying build/lib/hypothesis_agent/data_analysis_agent/summary_information.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/data_analysis_agent 2025-06-01T08:06:06,502 copying build/lib/hypothesis_agent/data_analysis_agent/generation.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/data_analysis_agent 2025-06-01T08:06:06,504 copying build/lib/hypothesis_agent/data_analysis_agent/__init__.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/data_analysis_agent 2025-06-01T08:06:06,506 creating build/bdist.linux-armv7l/wheel/hypothesis_agent/literature_review_agent 2025-06-01T08:06:06,508 copying build/lib/hypothesis_agent/literature_review_agent/literature_review.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/literature_review_agent 2025-06-01T08:06:06,510 creating build/bdist.linux-armv7l/wheel/hypothesis_agent/literature_review_agent/literature_processor 2025-06-01T08:06:06,511 copying build/lib/hypothesis_agent/literature_review_agent/literature_processor/summarize.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/literature_review_agent/literature_processor 2025-06-01T08:06:06,513 copying build/lib/hypothesis_agent/literature_review_agent/literature_processor/extract_info.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/literature_review_agent/literature_processor 2025-06-01T08:06:06,515 copying build/lib/hypothesis_agent/literature_review_agent/literature_processor/process_pdf.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/literature_review_agent/literature_processor 2025-06-01T08:06:06,517 copying build/lib/hypothesis_agent/literature_review_agent/literature_processor/__init__.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/literature_review_agent/literature_processor 2025-06-01T08:06:06,519 copying build/lib/hypothesis_agent/literature_review_agent/__init__.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent/literature_review_agent 2025-06-01T08:06:06,521 copying build/lib/hypothesis_agent/__init__.py -> build/bdist.linux-armv7l/wheel/./hypothesis_agent 2025-06-01T08:06:06,524 creating build/bdist.linux-armv7l/wheel/hypogenic_cmd 2025-06-01T08:06:06,525 copying build/lib/hypogenic_cmd/inference.py -> build/bdist.linux-armv7l/wheel/./hypogenic_cmd 2025-06-01T08:06:06,527 copying build/lib/hypogenic_cmd/generation.py -> build/bdist.linux-armv7l/wheel/./hypogenic_cmd 2025-06-01T08:06:06,530 copying build/lib/hypogenic_cmd/__init__.py -> build/bdist.linux-armv7l/wheel/./hypogenic_cmd 2025-06-01T08:06:06,532 creating build/bdist.linux-armv7l/wheel/IO_prompting 2025-06-01T08:06:06,533 copying build/lib/IO_prompting/prompt.py -> build/bdist.linux-armv7l/wheel/./IO_prompting 2025-06-01T08:06:06,535 copying build/lib/IO_prompting/update.py -> build/bdist.linux-armv7l/wheel/./IO_prompting 2025-06-01T08:06:06,537 copying build/lib/IO_prompting/generation.py -> build/bdist.linux-armv7l/wheel/./IO_prompting 2025-06-01T08:06:06,539 copying build/lib/IO_prompting/__init__.py -> build/bdist.linux-armv7l/wheel/./IO_prompting 2025-06-01T08:06:06,540 running install_egg_info 2025-06-01T08:06:06,574 running egg_info 2025-06-01T08:06:06,600 writing hypogenic.egg-info/PKG-INFO 2025-06-01T08:06:06,604 writing dependency_links to hypogenic.egg-info/dependency_links.txt 2025-06-01T08:06:06,605 writing entry points to hypogenic.egg-info/entry_points.txt 2025-06-01T08:06:06,607 writing requirements to hypogenic.egg-info/requires.txt 2025-06-01T08:06:06,608 writing top-level names to hypogenic.egg-info/top_level.txt 2025-06-01T08:06:06,646 reading manifest file 'hypogenic.egg-info/SOURCES.txt' 2025-06-01T08:06:06,651 reading manifest template 'MANIFEST.in' 2025-06-01T08:06:06,652 adding license file 'LICENSE' 2025-06-01T08:06:06,657 writing manifest file 'hypogenic.egg-info/SOURCES.txt' 2025-06-01T08:06:06,659 Copying hypogenic.egg-info to build/bdist.linux-armv7l/wheel/./hypogenic-0.3.2-py3.11.egg-info 2025-06-01T08:06:06,672 running install_scripts 2025-06-01T08:06:06,685 creating build/bdist.linux-armv7l/wheel/hypogenic-0.3.2.dist-info/WHEEL 2025-06-01T08:06:06,688 creating '/tmp/pip-wheel-t4xfzq00/hypogenic-0.3.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-06-01T08:06:06,690 adding 'IO_prompting/__init__.py' 2025-06-01T08:06:06,691 adding 'IO_prompting/generation.py' 2025-06-01T08:06:06,693 adding 'IO_prompting/prompt.py' 2025-06-01T08:06:06,694 adding 'IO_prompting/update.py' 2025-06-01T08:06:06,697 adding 'hypogenic/LLM_cache.py' 2025-06-01T08:06:06,698 adding 'hypogenic/__init__.py' 2025-06-01T08:06:06,700 adding 'hypogenic/extract_label.py' 2025-06-01T08:06:06,701 adding 'hypogenic/logger_config.py' 2025-06-01T08:06:06,703 adding 'hypogenic/prompt.py' 2025-06-01T08:06:06,704 adding 'hypogenic/register.py' 2025-06-01T08:06:06,706 adding 'hypogenic/tasks.py' 2025-06-01T08:06:06,707 adding 'hypogenic/utils.py' 2025-06-01T08:06:06,709 adding 'hypogenic/LLM_wrapper/__init__.py' 2025-06-01T08:06:06,710 adding 'hypogenic/LLM_wrapper/base.py' 2025-06-01T08:06:06,711 adding 'hypogenic/LLM_wrapper/claude.py' 2025-06-01T08:06:06,713 adding 'hypogenic/LLM_wrapper/gpt.py' 2025-06-01T08:06:06,715 adding 'hypogenic/LLM_wrapper/local.py' 2025-06-01T08:06:06,716 adding 'hypogenic/LLM_wrapper/rate_limiter.py' 2025-06-01T08:06:06,717 adding 'hypogenic/LLM_wrapper/wrapper_utils.py' 2025-06-01T08:06:06,719 adding 'hypogenic/algorithm/__init__.py' 2025-06-01T08:06:06,720 adding 'hypogenic/algorithm/replace.py' 2025-06-01T08:06:06,722 adding 'hypogenic/algorithm/summary_information.py' 2025-06-01T08:06:06,724 adding 'hypogenic/algorithm/generation/__init__.py' 2025-06-01T08:06:06,725 adding 'hypogenic/algorithm/generation/base.py' 2025-06-01T08:06:06,727 adding 'hypogenic/algorithm/generation/default.py' 2025-06-01T08:06:06,728 adding 'hypogenic/algorithm/generation/utils.py' 2025-06-01T08:06:06,730 adding 'hypogenic/algorithm/inference/__init__.py' 2025-06-01T08:06:06,731 adding 'hypogenic/algorithm/inference/base.py' 2025-06-01T08:06:06,733 adding 'hypogenic/algorithm/inference/default.py' 2025-06-01T08:06:06,735 adding 'hypogenic/algorithm/inference/filter_and_weight.py' 2025-06-01T08:06:06,737 adding 'hypogenic/algorithm/inference/one_step_adaptive.py' 2025-06-01T08:06:06,738 adding 'hypogenic/algorithm/inference/two_step_adaptive.py' 2025-06-01T08:06:06,740 adding 'hypogenic/algorithm/inference/upperbound.py' 2025-06-01T08:06:06,741 adding 'hypogenic/algorithm/update/__init__.py' 2025-06-01T08:06:06,743 adding 'hypogenic/algorithm/update/base.py' 2025-06-01T08:06:06,744 adding 'hypogenic/algorithm/update/default.py' 2025-06-01T08:06:06,746 adding 'hypogenic/algorithm/update/sampling.py' 2025-06-01T08:06:06,749 adding 'hypogenic-0.3.2.dist-info/licenses/LICENSE' 2025-06-01T08:06:06,750 adding 'hypogenic_cmd/__init__.py' 2025-06-01T08:06:06,752 adding 'hypogenic_cmd/generation.py' 2025-06-01T08:06:06,753 adding 'hypogenic_cmd/inference.py' 2025-06-01T08:06:06,755 adding 'hypothesis_agent/__init__.py' 2025-06-01T08:06:06,756 adding 'hypothesis_agent/utils.py' 2025-06-01T08:06:06,758 adding 'hypothesis_agent/data_analysis_agent/__init__.py' 2025-06-01T08:06:06,760 adding 'hypothesis_agent/data_analysis_agent/generation.py' 2025-06-01T08:06:06,761 adding 'hypothesis_agent/data_analysis_agent/inference.py' 2025-06-01T08:06:06,763 adding 'hypothesis_agent/data_analysis_agent/prompt.py' 2025-06-01T08:06:06,764 adding 'hypothesis_agent/data_analysis_agent/summary_information.py' 2025-06-01T08:06:06,765 adding 'hypothesis_agent/data_analysis_agent/task.py' 2025-06-01T08:06:06,767 adding 'hypothesis_agent/data_analysis_agent/union_generation.py' 2025-06-01T08:06:06,769 adding 'hypothesis_agent/data_analysis_agent/update.py' 2025-06-01T08:06:06,771 adding 'hypothesis_agent/data_analysis_agent/utils.py' 2025-06-01T08:06:06,772 adding 'hypothesis_agent/literature_review_agent/__init__.py' 2025-06-01T08:06:06,773 adding 'hypothesis_agent/literature_review_agent/literature_review.py' 2025-06-01T08:06:06,775 adding 'hypothesis_agent/literature_review_agent/literature_processor/__init__.py' 2025-06-01T08:06:06,776 adding 'hypothesis_agent/literature_review_agent/literature_processor/extract_info.py' 2025-06-01T08:06:06,777 adding 'hypothesis_agent/literature_review_agent/literature_processor/process_pdf.py' 2025-06-01T08:06:06,779 adding 'hypothesis_agent/literature_review_agent/literature_processor/summarize.py' 2025-06-01T08:06:06,781 adding 'hypogenic-0.3.2.dist-info/METADATA' 2025-06-01T08:06:06,782 adding 'hypogenic-0.3.2.dist-info/WHEEL' 2025-06-01T08:06:06,783 adding 'hypogenic-0.3.2.dist-info/entry_points.txt' 2025-06-01T08:06:06,784 adding 'hypogenic-0.3.2.dist-info/top_level.txt' 2025-06-01T08:06:06,785 adding 'hypogenic-0.3.2.dist-info/RECORD' 2025-06-01T08:06:06,788 removing build/bdist.linux-armv7l/wheel 2025-06-01T08:06:06,913 Building wheel for hypogenic (setup.py): finished with status 'done' 2025-06-01T08:06:06,916 Created wheel for hypogenic: filename=hypogenic-0.3.2-py3-none-any.whl size=78298 sha256=504a92482bbcb82f3f2cde2fc401f9b1f8817ec32c89f427ac6e88a278085f27 2025-06-01T08:06:06,917 Stored in directory: /tmp/pip-ephem-wheel-cache-rvvioftz/wheels/54/c7/c0/7cf2d34adeed09e8226479e1f49ec85934143548aa67d64a69 2025-06-01T08:06:06,933 Successfully built hypogenic 2025-06-01T08:06:06,939 Removed build tracker: '/tmp/pip-build-tracker-2yjn1hz7'