2025-06-01T09:27:32,675 Created temporary directory: /tmp/pip-build-tracker-vh1pr015 2025-06-01T09:27:32,677 Initialized build tracking at /tmp/pip-build-tracker-vh1pr015 2025-06-01T09:27:32,677 Created build tracker: /tmp/pip-build-tracker-vh1pr015 2025-06-01T09:27:32,678 Entered build tracker: /tmp/pip-build-tracker-vh1pr015 2025-06-01T09:27:32,678 Created temporary directory: /tmp/pip-wheel-qovyz96z 2025-06-01T09:27:32,682 Created temporary directory: /tmp/pip-ephem-wheel-cache-lb93372m 2025-06-01T09:27:32,732 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-06-01T09:27:32,734 2 location(s) to search for versions of pyslow5: 2025-06-01T09:27:32,734 * https://pypi.org/simple/pyslow5/ 2025-06-01T09:27:32,734 * https://www.piwheels.org/simple/pyslow5/ 2025-06-01T09:27:32,735 Fetching project page and analyzing links: https://pypi.org/simple/pyslow5/ 2025-06-01T09:27:32,735 Getting page https://pypi.org/simple/pyslow5/ 2025-06-01T09:27:32,737 Found index url https://pypi.org/simple/ 2025-06-01T09:27:32,960 Fetched page https://pypi.org/simple/pyslow5/ as application/vnd.pypi.simple.v1+json 2025-06-01T09:27:32,970 Found link https://files.pythonhosted.org/packages/23/0d/38c8cfedd09e7f753347b6ecd717a101c7236daf2ecccb34d44cedc6f125/pyslow5-0.2.0a1.tar.gz (from https://pypi.org/simple/pyslow5/), version: 0.2.0a1 2025-06-01T09:27:32,972 Found link https://files.pythonhosted.org/packages/41/8b/eed2c94d79c0af2a69cddfcbc774697dbac35e0a053f7bfd452a629aca4a/pyslow5-0.3.0a1.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.3.0a1 2025-06-01T09:27:32,973 Found link https://files.pythonhosted.org/packages/f5/5d/dbbfdb907972c60c3df0cf2e055b307101f0244717b3b84bc58db8c5fe5c/pyslow5-0.3.0.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.3.0 2025-06-01T09:27:32,974 Found link https://files.pythonhosted.org/packages/83/db/b907cf8f56a7d32c7daf087cd83050b6fcf5e9fc0bf16c6bd1a685b98831/pyslow5-0.4.0.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.4.0 2025-06-01T09:27:32,975 Found link https://files.pythonhosted.org/packages/bd/f7/a70be3cd8265e6b5f12819526b90c1a6cb86a3e515da2831c99858f9a239/pyslow5-0.5.0a1.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.5.0a1 2025-06-01T09:27:32,975 Found link https://files.pythonhosted.org/packages/f2/8e/cc65540c51e93847d6d6302b2fff701ee10e464898844414449e05a4d333/pyslow5-0.5.0a2.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.5.0a2 2025-06-01T09:27:32,977 Found link https://files.pythonhosted.org/packages/ad/4a/43f267cff4fac073b610a2b1eeb219c0be3ca775c937e3811c438ee2577e/pyslow5-0.5.0.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.5.0 2025-06-01T09:27:32,977 Found link https://files.pythonhosted.org/packages/3b/8b/a5bb994f4c963f8b969ab4a8c4c46f01ed4b95239fbb2b1180c77452f50b/pyslow5-0.6.0.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.6.0 2025-06-01T09:27:32,978 Found link https://files.pythonhosted.org/packages/04/d6/970f6da0fce1afd315a3e763ec8a7175791cce0ef5d08968a5fef2c0add0/pyslow5-0.7.0.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.7.0 2025-06-01T09:27:32,979 Found link https://files.pythonhosted.org/packages/d5/aa/815199ef79e407b2fba5e16b8d83c2bb7e00a640d30e67921d2f672e0d9d/pyslow5-0.8.0.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.8.0 2025-06-01T09:27:32,980 Found link https://files.pythonhosted.org/packages/28/1e/d4377af23de1ab4535ebe911e6b34afa6ee5d8a33a9b20388076f3ebca2e/pyslow5-0.9.0.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 0.9.0 2025-06-01T09:27:32,981 Found link https://files.pythonhosted.org/packages/78/f1/0f9a1ed7f046356b78aee6ff4f254898012b0c0a61e06eec7c5248099a0c/pyslow5-1.0.0.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 1.0.0 2025-06-01T09:27:32,981 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/31/2a/88c40313ad647d922cf2453f0d049aa90da7de1158f38f959d42a351d690/pyslow5-1.0.1b0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2025-06-01T09:27:32,982 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/fe/21/024bf2a99f54ae23a902dc0a63e3226a8a57a614d4ed8e966ba71c6fbac6/pyslow5-1.0.1b0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2025-06-01T09:27:32,983 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/c9/60/9191d3f3731db61b6ce1da53a13b477c8227d7e94098e084f57147e7a347/pyslow5-1.0.1b0-cp35-cp35m-manylinux_2_5_x86_64.manylinux1_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2025-06-01T09:27:32,984 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/e9/ec/f55a306a7ef3e43f0767e1c7ab3c0a9d958217114ca4e1b717cf6e6de661/pyslow5-1.0.1b0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2025-06-01T09:27:32,984 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/5e/61/07d1d57a6dd765e11f0012d69c3db83356e8f643bd8ee8d9b59809e52d8f/pyslow5-1.0.1b0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2025-06-01T09:27:32,985 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/03/db/b2c9f505d1b0f356959523d9f8d9cc569cab5751e80579d54932d0134d82/pyslow5-1.0.1b0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2025-06-01T09:27:32,985 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/fc/3c/910414b4d79718d4b9318fa617d5a74a58082b98e5bf8c63ede0cbce9fc5/pyslow5-1.0.1b0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2025-06-01T09:27:32,986 Found link https://files.pythonhosted.org/packages/9c/e4/60b7418bbd72939ed1e3ab3f3672901a876205ae27d2f4aa54a0a5d09411/pyslow5-1.0.1b0.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 1.0.1b0 2025-06-01T09:27:32,987 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/f2/f6/ebcd19e395231e3d6a7807cbf4e31e7b4b5316ff5183a5ef7c909c491038/pyslow5-1.1.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2025-06-01T09:27:32,987 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/18/a7/7ec4d4a18b4f1f2a4de93bb7d29f01651e2b0203de24770624bee2f61971/pyslow5-1.1.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2025-06-01T09:27:32,988 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/48/e2/8021a651d98bd1826272b67b7958d1a235becba7ecac011c071cb797a965/pyslow5-1.1.0-cp35-cp35m-manylinux_2_5_x86_64.manylinux1_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2025-06-01T09:27:32,989 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/58/92/11b79557222a96a3d9efc6a7a4bdabdb2307d6b3e4cd2e44b5806d61a926/pyslow5-1.1.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2025-06-01T09:27:32,989 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/f3/fb/9c71f2eba2d7adcc935eaa85ed61e85409eeeb3bf74f45192e04b079954a/pyslow5-1.1.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2025-06-01T09:27:32,990 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/97/16/534a42c24cb4d14c05cf1001a5bd1c5a596c3beba755fd6f8be41921845a/pyslow5-1.1.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2025-06-01T09:27:32,991 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/6a/9c/c379eda73ac5f913ba5351e6724fbdfb5c249caada336e661b79c7a10c6f/pyslow5-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2025-06-01T09:27:32,991 Found link https://files.pythonhosted.org/packages/96/80/ef430871b57cb97e2ab2449140fd00deec6cd9e8c71249676d561a45862a/pyslow5-1.1.0.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 1.1.0 2025-06-01T09:27:32,992 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/ed/75/92c29964f34e48c8e4326a7576ec507117e23023d87a9f3aa5b3def15574/pyslow5-1.2.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2025-06-01T09:27:32,993 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/9e/13/8159dd4662250081dbfadd9d9a60e5e909831711d0b06e0f50fb9cdce6d1/pyslow5-1.2.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2025-06-01T09:27:32,993 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/18/de/c590c48a1f4a647af046ba0bdbcba57e0de59d377e95412c6b063f741f89/pyslow5-1.2.0-cp35-cp35m-manylinux_2_5_x86_64.manylinux1_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2025-06-01T09:27:32,994 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/bc/83/547cf814c95f1c3cb824ae4f2227a83c69a6478dbc41715f43cc5fb856a2/pyslow5-1.2.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2025-06-01T09:27:32,995 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/da/9d/96f10e54d4bc7f665cb38dd6e1da310f925e8be54282546913c0858e9b22/pyslow5-1.2.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2025-06-01T09:27:32,995 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/2c/67/d33d77f36efef0d52a3f6e2240b6ec739693bf4cb269b71d4377edc6f50d/pyslow5-1.2.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2025-06-01T09:27:32,996 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/57/c0/6cf7ebb8c14f84f0916c829f588d981b4ea7d5096988b37de756b825b64f/pyslow5-1.2.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2025-06-01T09:27:32,997 Found link https://files.pythonhosted.org/packages/46/e0/7f6a9a85ad7eb2bb4c7da0faf39aaa936debce5abc7c713c53283402cc62/pyslow5-1.2.0.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 1.2.0 2025-06-01T09:27:32,997 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/53/b5/f304e0c77ad529617da5c9ab076d3e00825bd34fe8df656fdae180553cbb/pyslow5-1.3.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2025-06-01T09:27:32,998 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/6f/ef/6f5f58e39468e6ac3c59af0ec6a87ed5a4f75af1b13407164dd9f0b0573f/pyslow5-1.3.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2025-06-01T09:27:32,999 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/42/0c/d365e88cc53cfb66a1f7d9c829783dfb158a02e6bafe9669a6c2b7afcff8/pyslow5-1.3.0-cp35-cp35m-manylinux_2_5_x86_64.manylinux1_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2025-06-01T09:27:32,999 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/05/e9/70292c98a7913c9ca4a6296e81f2f1e1a1efcff8ec6af7406cc9564dc753/pyslow5-1.3.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2025-06-01T09:27:33,000 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/81/16/89764f958dfd9ee0eb0e365415a7d4c46bc014a13542fd567d1ba073ce80/pyslow5-1.3.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2025-06-01T09:27:33,001 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/39/01/55d61572ab02ffca62d04eda337f165ed6fe5603eafe49fcfea6080e6732/pyslow5-1.3.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2025-06-01T09:27:33,002 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/ce/0c/4c8e34a4451cc176ea9fbb89efd1e0d8c7cf1e58f88ba9da8c479a01e516/pyslow5-1.3.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2025-06-01T09:27:33,002 Found link https://files.pythonhosted.org/packages/d3/40/e1585e7fc164b5c2cf8396ff1aa342fa4b4c9aeb5282ab4dd261eac41b6b/pyslow5-1.3.0.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 1.3.0 2025-06-01T09:27:33,003 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/ee/b3/eb5011ad9c952067ecbd55f61746a7f63f68f3689f15fc606a00ee234ac1/pyslow5-1.3.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2025-06-01T09:27:33,004 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/24/47/4312d21e5b91ea049d5ab9afe7d28b5cad12f6e42d146c89149579c306ce/pyslow5-1.3.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2025-06-01T09:27:33,004 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/9c/4a/31c07537f63f75a55a45e7376fcbadb6011038a3acebcf5c8845e1f2d95b/pyslow5-1.3.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2025-06-01T09:27:33,005 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/38/62/2d35426ba601653c052397d940f0bbbfb4f4d778472daed25fc5df3484ba/pyslow5-1.3.1-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2025-06-01T09:27:33,006 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/12/bf/a15c2916ef6e8af084e5ad2c63878bb492f905f8d29843ab49afe7b59511/pyslow5-1.3.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2025-06-01T09:27:33,007 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/08/28/ba7b47257ffa446f8c655c98a28c8a2964887c100690806b78757ee4c483/pyslow5-1.3.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2025-06-01T09:27:33,007 Skipping link: No binaries permitted for pyslow5: https://files.pythonhosted.org/packages/bd/e1/bcec4cda878b34b74e32a8d7c95e188934a428e915c02a80cdb38eaedcaa/pyslow5-1.3.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3) 2025-06-01T09:27:33,008 Found link https://files.pythonhosted.org/packages/f0/38/7fc669dd35422170e76f70dcfe284b9c2dacf2644038c4427973de33a1f8/pyslow5-1.3.1.tar.gz (from https://pypi.org/simple/pyslow5/) (requires-python:>=3.4.3), version: 1.3.1 2025-06-01T09:27:33,009 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyslow5/ 2025-06-01T09:27:33,010 Getting page https://www.piwheels.org/simple/pyslow5/ 2025-06-01T09:27:33,011 Found index url https://www.piwheels.org/simple/ 2025-06-01T09:27:33,180 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/pyslow5/ 2025-06-01T09:27:33,829 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/pyslow5/ 2025-06-01T09:27:35,030 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/pyslow5/ 2025-06-01T09:27:37,247 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/pyslow5/ 2025-06-01T09:27:41,439 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/pyslow5/ 2025-06-01T09:27:41,654 Could not fetch URL https://www.piwheels.org/simple/pyslow5/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/pyslow5/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping 2025-06-01T09:27:41,656 Skipping link: not a file: https://www.piwheels.org/simple/pyslow5/ 2025-06-01T09:27:41,656 Skipping link: not a file: https://pypi.org/simple/pyslow5/ 2025-06-01T09:27:41,675 Given no hashes to check 1 links for project 'pyslow5': discarding no candidates 2025-06-01T09:27:41,677 Collecting pyslow5==1.3.1 2025-06-01T09:27:41,679 Created temporary directory: /tmp/pip-unpack-k0bdo1q2 2025-06-01T09:27:41,904 Downloading pyslow5-1.3.1.tar.gz (649 kB) 2025-06-01T09:27:42,362 Added pyslow5==1.3.1 from https://files.pythonhosted.org/packages/f0/38/7fc669dd35422170e76f70dcfe284b9c2dacf2644038c4427973de33a1f8/pyslow5-1.3.1.tar.gz to build tracker '/tmp/pip-build-tracker-vh1pr015' 2025-06-01T09:27:42,364 Running setup.py (path:/tmp/pip-wheel-qovyz96z/pyslow5_3f99e6e536344a7e96d9a38f52ecff3d/setup.py) egg_info for package pyslow5 2025-06-01T09:27:42,365 Created temporary directory: /tmp/pip-pip-egg-info-mxo7qivp 2025-06-01T09:27:42,366 Preparing metadata (setup.py): started 2025-06-01T09:27:42,367 Running command python setup.py egg_info 2025-06-01T09:27:43,417 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-06-01T09:27:43,417 !! 2025-06-01T09:27:43,418 ******************************************************************************** 2025-06-01T09:27:43,419 Requirements should be satisfied by a PEP 517 installer. 2025-06-01T09:27:43,419 If you are using pip, you can try `pip install --use-pep517`. 2025-06-01T09:27:43,420 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-06-01T09:27:43,421 or your builds will no longer be supported. 2025-06-01T09:27:43,422 ******************************************************************************** 2025-06-01T09:27:43,423 !! 2025-06-01T09:27:43,423 dist.fetch_build_eggs(dist.setup_requires) 2025-06-01T09:27:43,640 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-06-01T09:27:43,641 !! 2025-06-01T09:27:43,641 ******************************************************************************** 2025-06-01T09:27:43,642 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-06-01T09:27:43,643 License :: OSI Approved :: MIT License 2025-06-01T09:27:43,644 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-01T09:27:43,644 ******************************************************************************** 2025-06-01T09:27:43,645 !! 2025-06-01T09:27:43,645 self._finalize_license_expression() 2025-06-01T09:27:43,671 running egg_info 2025-06-01T09:27:43,698 creating /tmp/pip-pip-egg-info-mxo7qivp/pyslow5.egg-info 2025-06-01T09:27:43,699 writing /tmp/pip-pip-egg-info-mxo7qivp/pyslow5.egg-info/PKG-INFO 2025-06-01T09:27:43,702 writing dependency_links to /tmp/pip-pip-egg-info-mxo7qivp/pyslow5.egg-info/dependency_links.txt 2025-06-01T09:27:43,704 writing requirements to /tmp/pip-pip-egg-info-mxo7qivp/pyslow5.egg-info/requires.txt 2025-06-01T09:27:43,705 writing top-level names to /tmp/pip-pip-egg-info-mxo7qivp/pyslow5.egg-info/top_level.txt 2025-06-01T09:27:43,707 writing manifest file '/tmp/pip-pip-egg-info-mxo7qivp/pyslow5.egg-info/SOURCES.txt' 2025-06-01T09:27:43,761 reading manifest file '/tmp/pip-pip-egg-info-mxo7qivp/pyslow5.egg-info/SOURCES.txt' 2025-06-01T09:27:43,762 reading manifest template 'MANIFEST.in' 2025-06-01T09:27:43,782 writing manifest file '/tmp/pip-pip-egg-info-mxo7qivp/pyslow5.egg-info/SOURCES.txt' 2025-06-01T09:27:43,911 Preparing metadata (setup.py): finished with status 'done' 2025-06-01T09:27:43,917 Source in /tmp/pip-wheel-qovyz96z/pyslow5_3f99e6e536344a7e96d9a38f52ecff3d has version 1.3.1, which satisfies requirement pyslow5==1.3.1 from https://files.pythonhosted.org/packages/f0/38/7fc669dd35422170e76f70dcfe284b9c2dacf2644038c4427973de33a1f8/pyslow5-1.3.1.tar.gz 2025-06-01T09:27:43,918 Removed pyslow5==1.3.1 from https://files.pythonhosted.org/packages/f0/38/7fc669dd35422170e76f70dcfe284b9c2dacf2644038c4427973de33a1f8/pyslow5-1.3.1.tar.gz from build tracker '/tmp/pip-build-tracker-vh1pr015' 2025-06-01T09:27:43,926 Created temporary directory: /tmp/pip-unpack-zfp479oa 2025-06-01T09:27:43,927 Created temporary directory: /tmp/pip-unpack-h3_26ix_ 2025-06-01T09:27:43,927 Building wheels for collected packages: pyslow5 2025-06-01T09:27:43,931 Created temporary directory: /tmp/pip-wheel-zmlmv3mc 2025-06-01T09:27:43,932 DEPRECATION: Building 'pyslow5' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'pyslow5'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-06-01T09:27:43,933 Building wheel for pyslow5 (setup.py): started 2025-06-01T09:27:43,934 Destination directory: /tmp/pip-wheel-zmlmv3mc 2025-06-01T09:27:43,935 Running command python setup.py bdist_wheel 2025-06-01T09:27:44,837 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2025-06-01T09:27:44,838 !! 2025-06-01T09:27:44,839 ******************************************************************************** 2025-06-01T09:27:44,840 Requirements should be satisfied by a PEP 517 installer. 2025-06-01T09:27:44,840 If you are using pip, you can try `pip install --use-pep517`. 2025-06-01T09:27:44,841 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-06-01T09:27:44,842 or your builds will no longer be supported. 2025-06-01T09:27:44,842 ******************************************************************************** 2025-06-01T09:27:44,843 !! 2025-06-01T09:27:44,844 dist.fetch_build_eggs(dist.setup_requires) 2025-06-01T09:27:45,060 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-06-01T09:27:45,061 !! 2025-06-01T09:27:45,061 ******************************************************************************** 2025-06-01T09:27:45,062 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-06-01T09:27:45,063 License :: OSI Approved :: MIT License 2025-06-01T09:27:45,064 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-01T09:27:45,064 ******************************************************************************** 2025-06-01T09:27:45,065 !! 2025-06-01T09:27:45,066 self._finalize_license_expression() 2025-06-01T09:27:45,066 running bdist_wheel 2025-06-01T09:27:45,172 running build 2025-06-01T09:27:45,173 running build_ext 2025-06-01T09:27:46,022 Compiling python/pyslow5.pyx because it changed. 2025-06-01T09:27:46,022 [1/1] Cythonizing python/pyslow5.pyx 2025-06-01T09:27:56,009 building 'pyslow5' extension 2025-06-01T09:27:56,011 creating build/temp.linux-armv7l-cpython-311/python 2025-06-01T09:27:56,013 creating build/temp.linux-armv7l-cpython-311/src 2025-06-01T09:27:56,014 creating build/temp.linux-armv7l-cpython-311/thirdparty/streamvbyte/src 2025-06-01T09:27:56,016 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.11/dist-packages/numpy/_core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.11 -c python/pyslow5.c -o build/temp.linux-armv7l-cpython-311/python/pyslow5.o -g -Wall -O2 -std=c99 -DSLOW5_ENABLE_MT=1 -mfpu=neon 2025-06-01T09:27:56,527 In file included from /usr/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h:1913, 2025-06-01T09:27:56,527 from /usr/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h:12, 2025-06-01T09:27:56,528 from /usr/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h:5, 2025-06-01T09:27:56,528 from python/pyslow5.c:1196: 2025-06-01T09:27:56,529 /usr/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2025-06-01T09:27:56,530 17 | #warning "Using deprecated NumPy API, disable it with " \ 2025-06-01T09:27:56,530 | ^~~~~~~ 2025-06-01T09:29:13,357 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.11/dist-packages/numpy/_core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.11 -c src/slow5.c -o build/temp.linux-armv7l-cpython-311/src/slow5.o -g -Wall -O2 -std=c99 -DSLOW5_ENABLE_MT=1 -mfpu=neon 2025-06-01T09:29:13,564 src/slow5.c: In function ‘slow5_init’: 2025-06-01T09:29:13,565 src/slow5.c:193:51: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-06-01T09:29:13,566 193 | if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) { 2025-06-01T09:29:13,567 | ^~ 2025-06-01T09:29:13,568 src/slow5.c: In function ‘slow5_init_empty’: 2025-06-01T09:29:13,569 src/slow5.c:267:51: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-06-01T09:29:13,570 267 | if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) { 2025-06-01T09:29:13,570 | ^~ 2025-06-01T09:29:13,588 In file included from src/slow5.c:44: 2025-06-01T09:29:13,588 src/slow5.c: In function ‘slow5_hdr_init’: 2025-06-01T09:29:13,588 src/slow5_byte.h:162:24: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2025-06-01T09:29:13,589 162 | ( (slow5_bigend) ? (slow5_fread_bigend((ptr), (size), (nitems), (stream))) : (fread((ptr), (size), (nitems), (stream))) ) 2025-06-01T09:29:13,590 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-06-01T09:29:13,590 src/slow5.c:823:20: note: in expansion of macro ‘SLOW5_FREAD’ 2025-06-01T09:29:13,590 823 | } else if (SLOW5_FREAD(&header->num_read_groups, sizeof header->num_read_groups, 1, fp) != 1) { 2025-06-01T09:29:13,591 | ^~~~~~~~~~~ 2025-06-01T09:29:13,592 src/slow5_byte.h:162:24: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2025-06-01T09:29:13,592 162 | ( (slow5_bigend) ? (slow5_fread_bigend((ptr), (size), (nitems), (stream))) : (fread((ptr), (size), (nitems), (stream))) ) 2025-06-01T09:29:13,593 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-06-01T09:29:13,593 src/slow5.c:834:20: note: in expansion of macro ‘SLOW5_FREAD’ 2025-06-01T09:29:13,594 834 | } else if (SLOW5_FREAD(&header_size, sizeof header_size, 1, fp) != 1) { 2025-06-01T09:29:13,595 | ^~~~~~~~~~~ 2025-06-01T09:29:13,641 src/slow5.c: In function ‘slow5_get_mem’: 2025-06-01T09:29:13,643 src/slow5.c:2467:49: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-06-01T09:29:13,644 2467 | if (pread(s5p->meta.fd, mem, bytes, offset) != bytes) { 2025-06-01T09:29:13,644 | ^~ 2025-06-01T09:29:13,646 In file included from include/slow5/slow5.h:55, 2025-06-01T09:29:13,647 from src/slow5.c:40: 2025-06-01T09:29:13,647 include/slow5/slow5_error.h:80:28: warning: format ‘%zu’ expects argument of type ‘size_t’, but argument 5 has type ‘off_t’ {aka ‘long int’} [-Wformat=] 2025-06-01T09:29:13,648 80 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m " 2025-06-01T09:29:13,649 | ^~~~~~~~~~~~~~~~~~~~~~~~ 2025-06-01T09:29:13,649 include/slow5/slow5_error.h:117:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’ 2025-06-01T09:29:13,650 117 | fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \ 2025-06-01T09:29:13,650 | ^~~~~~~~~~~~~~~~~~ 2025-06-01T09:29:13,651 src/slow5.c:2468:9: note: in expansion of macro ‘SLOW5_ERROR’ 2025-06-01T09:29:13,652 2468 | SLOW5_ERROR("Failed to pread '%zu' bytes at offset '%zu' from slow5 file '%s'.", 2025-06-01T09:29:13,652 | ^~~~~~~~~~~ 2025-06-01T09:29:13,668 src/slow5.c: In function ‘slow5_rec_aux_parse’: 2025-06-01T09:29:13,671 include/slow5/slow5_error.h:80:28: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-06-01T09:29:13,671 80 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m " 2025-06-01T09:29:13,672 | ^~~~~~~~~~~~~~~~~~~~~~~~ 2025-06-01T09:29:13,673 include/slow5/slow5_error.h:117:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’ 2025-06-01T09:29:13,673 117 | fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \ 2025-06-01T09:29:13,674 | ^~~~~~~~~~~~~~~~~~ 2025-06-01T09:29:13,674 src/slow5.c:3094:17: note: in expansion of macro ‘SLOW5_ERROR’ 2025-06-01T09:29:13,675 3094 | SLOW5_ERROR("Auxiliary field '%s' is missing in record. At offset '%" PRIu64 "' and record size is '%" PRIu64 "'.", aux_meta->attrs[i], offset, read_size); 2025-06-01T09:29:13,675 | ^~~~~~~~~~~ 2025-06-01T09:29:13,676 src/slow5_byte.h:204:27: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2025-06-01T09:29:13,676 204 | for(int64_t i=0; i<(nitems); i++){ \ 2025-06-01T09:29:13,677 | ^ 2025-06-01T09:29:13,677 src/slow5.c:3134:25: note: in expansion of macro ‘SLOW5_BYTE_SWAP_ARRAY_VOID’ 2025-06-01T09:29:13,678 3134 | SLOW5_BYTE_SWAP_ARRAY_VOID(data, 2, len); 2025-06-01T09:29:13,678 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-06-01T09:29:13,766 src/slow5.c: In function ‘slow5_rec_to_mem’: 2025-06-01T09:29:13,770 src/slow5_byte.h:204:27: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2025-06-01T09:29:13,770 204 | for(int64_t i=0; i<(nitems); i++){ \ 2025-06-01T09:29:13,771 | ^ 2025-06-01T09:29:13,772 src/slow5.c:3989:66: note: in expansion of macro ‘SLOW5_BYTE_SWAP_ARRAY_VOID’ 2025-06-01T09:29:13,772 3989 | memcpy(mem + curr_len, read->raw_signal, bytes_raw_sig); SLOW5_BYTE_SWAP_ARRAY_VOID(mem + curr_len, sizeof *read->raw_signal, read->len_raw_signal); 2025-06-01T09:29:13,773 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-06-01T09:29:13,777 src/slow5_byte.h:204:27: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2025-06-01T09:29:13,778 204 | for(int64_t i=0; i<(nitems); i++){ \ 2025-06-01T09:29:13,779 | ^ 2025-06-01T09:29:13,780 src/slow5.c:4032:29: note: in expansion of macro ‘SLOW5_BYTE_SWAP_ARRAY_VOID’ 2025-06-01T09:29:13,780 4032 | SLOW5_BYTE_SWAP_ARRAY_VOID(mem + curr_len, 2, aux_data.len); 2025-06-01T09:29:13,781 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-06-01T09:29:24,951 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.11/dist-packages/numpy/_core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.11 -c src/slow5_idx.c -o build/temp.linux-armv7l-cpython-311/src/slow5_idx.o -g -Wall -O2 -std=c99 -DSLOW5_ENABLE_MT=1 -mfpu=neon 2025-06-01T09:29:25,147 src/slow5_idx.c: In function ‘slow5_idx_build’: 2025-06-01T09:29:25,148 src/slow5_idx.c:189:20: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-06-01T09:29:25,148 189 | if(curr_offset == -1){ 2025-06-01T09:29:25,149 | ^~ 2025-06-01T09:29:25,150 src/slow5_idx.c:216:19: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-06-01T09:29:25,151 216 | if(offset == -1){ 2025-06-01T09:29:25,151 | ^~ 2025-06-01T09:29:25,152 src/slow5_idx.c:242:23: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2025-06-01T09:29:25,153 242 | if(offset == -1){ 2025-06-01T09:29:25,154 | ^~ 2025-06-01T09:29:25,157 In file included from src/slow5_idx.c:9: 2025-06-01T09:29:25,157 src/slow5_idx.c: In function ‘slow5_idx_write’: 2025-06-01T09:29:25,158 src/slow5_byte.h:159:24: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2025-06-01T09:29:25,158 159 | ( (slow5_bigend) ? (slow5_fwrite_bigend((ptr), (size), (nitems), (stream))) : (fwrite((ptr), (size), (nitems), (stream))) ) 2025-06-01T09:29:25,159 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-06-01T09:29:25,159 src/slow5_idx.c:395:13: note: in expansion of macro ‘SLOW5_FWRITE’ 2025-06-01T09:29:25,160 395 | if (SLOW5_FWRITE(&read_id_len, sizeof read_id_len, 1, index->fp) != 1){ 2025-06-01T09:29:25,160 | ^~~~~~~~~~~~ 2025-06-01T09:29:25,161 src/slow5_byte.h:159:24: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2025-06-01T09:29:25,162 159 | ( (slow5_bigend) ? (slow5_fwrite_bigend((ptr), (size), (nitems), (stream))) : (fwrite((ptr), (size), (nitems), (stream))) ) 2025-06-01T09:29:25,162 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-06-01T09:29:25,163 src/slow5_idx.c:401:13: note: in expansion of macro ‘SLOW5_FWRITE’ 2025-06-01T09:29:25,163 401 | if (SLOW5_FWRITE(&read_index.offset, sizeof read_index.offset, 1, index->fp) != 1 ){ 2025-06-01T09:29:25,164 | ^~~~~~~~~~~~ 2025-06-01T09:29:25,165 src/slow5_byte.h:159:24: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2025-06-01T09:29:25,165 159 | ( (slow5_bigend) ? (slow5_fwrite_bigend((ptr), (size), (nitems), (stream))) : (fwrite((ptr), (size), (nitems), (stream))) ) 2025-06-01T09:29:25,166 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-06-01T09:29:25,167 src/slow5_idx.c:404:13: note: in expansion of macro ‘SLOW5_FWRITE’ 2025-06-01T09:29:25,168 404 | if (SLOW5_FWRITE(&read_index.size, sizeof read_index.size, 1, index->fp) != 1) { 2025-06-01T09:29:25,169 | ^~~~~~~~~~~~ 2025-06-01T09:29:25,170 src/slow5_idx.c: In function ‘slow5_idx_read’: 2025-06-01T09:29:25,171 src/slow5_byte.h:162:24: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2025-06-01T09:29:25,172 162 | ( (slow5_bigend) ? (slow5_fread_bigend((ptr), (size), (nitems), (stream))) : (fread((ptr), (size), (nitems), (stream))) ) 2025-06-01T09:29:25,172 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-06-01T09:29:25,173 src/slow5_idx.c:447:13: note: in expansion of macro ‘SLOW5_FREAD’ 2025-06-01T09:29:25,174 447 | if (SLOW5_FREAD(&read_id_len, sizeof read_id_len, 1, index->fp) != 1) { 2025-06-01T09:29:25,174 | ^~~~~~~~~~~ 2025-06-01T09:29:25,175 src/slow5_byte.h:162:24: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2025-06-01T09:29:25,176 162 | ( (slow5_bigend) ? (slow5_fread_bigend((ptr), (size), (nitems), (stream))) : (fread((ptr), (size), (nitems), (stream))) ) 2025-06-01T09:29:25,176 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-06-01T09:29:25,177 src/slow5_idx.c:485:13: note: in expansion of macro ‘SLOW5_FREAD’ 2025-06-01T09:29:25,178 485 | if (SLOW5_FREAD(&offset, sizeof offset, 1, index->fp) != 1 || 2025-06-01T09:29:25,178 | ^~~~~~~~~~~ 2025-06-01T09:29:25,180 src/slow5_byte.h:162:24: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2025-06-01T09:29:25,180 162 | ( (slow5_bigend) ? (slow5_fread_bigend((ptr), (size), (nitems), (stream))) : (fread((ptr), (size), (nitems), (stream))) ) 2025-06-01T09:29:25,181 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-06-01T09:29:25,181 src/slow5_idx.c:486:17: note: in expansion of macro ‘SLOW5_FREAD’ 2025-06-01T09:29:25,182 486 | SLOW5_FREAD(&size, sizeof size, 1, index->fp) != 1) { 2025-06-01T09:29:25,182 | ^~~~~~~~~~~ 2025-06-01T09:29:26,338 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.11/dist-packages/numpy/_core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.11 -c src/slow5_misc.c -o build/temp.linux-armv7l-cpython-311/src/slow5_misc.o -g -Wall -O2 -std=c99 -DSLOW5_ENABLE_MT=1 -mfpu=neon 2025-06-01T09:29:26,842 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.11/dist-packages/numpy/_core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.11 -c src/slow5_mt.c -o build/temp.linux-armv7l-cpython-311/src/slow5_mt.o -g -Wall -O2 -std=c99 -DSLOW5_ENABLE_MT=1 -mfpu=neon 2025-06-01T09:29:27,586 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.11/dist-packages/numpy/_core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.11 -c src/slow5_press.c -o build/temp.linux-armv7l-cpython-311/src/slow5_press.o -g -Wall -O2 -std=c99 -DSLOW5_ENABLE_MT=1 -mfpu=neon 2025-06-01T09:29:27,784 src/slow5_press.c: In function ‘slow5_fwrite_compress’: 2025-06-01T09:29:27,785 src/slow5_press.c:586:27: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-06-01T09:29:27,786 586 | if (bytes != size * nmemb || ferror(fp)) { 2025-06-01T09:29:27,787 | ^~ 2025-06-01T09:29:27,787 src/slow5_press.c:587:31: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-06-01T09:29:27,788 587 | if (bytes != size * nmemb) { 2025-06-01T09:29:27,789 | ^~ 2025-06-01T09:29:27,792 src/slow5_press.c: In function ‘slow5_pread_depress_solo’: 2025-06-01T09:29:27,792 src/slow5_press.c:714:47: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-06-01T09:29:27,793 714 | if ((ret = pread(fd, raw, count, offset)) != count) { 2025-06-01T09:29:27,793 | ^~ 2025-06-01T09:29:27,814 src/slow5_press.c: In function ‘ex_depress’: 2025-06-01T09:29:27,815 src/slow5_press.c:1490:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-06-01T09:29:27,815 1490 | if (ret !=nex_pos_press){ 2025-06-01T09:29:27,816 | ^~ 2025-06-01T09:29:27,818 src/slow5_press.c:1520:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-06-01T09:29:27,819 1520 | if (ret != nex_press){ 2025-06-01T09:29:27,819 | ^~ 2025-06-01T09:29:29,764 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.11/dist-packages/numpy/_core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.11 -c thirdparty/streamvbyte/src/streamvbyte_decode.c -o build/temp.linux-armv7l-cpython-311/thirdparty/streamvbyte/src/streamvbyte_decode.o -g -Wall -O2 -std=c99 -DSLOW5_ENABLE_MT=1 -mfpu=neon 2025-06-01T09:29:30,359 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.11/dist-packages/numpy/_core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.11 -c thirdparty/streamvbyte/src/streamvbyte_encode.c -o build/temp.linux-armv7l-cpython-311/thirdparty/streamvbyte/src/streamvbyte_encode.o -g -Wall -O2 -std=c99 -DSLOW5_ENABLE_MT=1 -mfpu=neon 2025-06-01T09:29:30,928 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Iinclude/ -I/usr/local/lib/python3.11/dist-packages/numpy/_core/include -Ithirdparty/streamvbyte/include -I/usr/include/python3.11 -c thirdparty/streamvbyte/src/streamvbyte_zigzag.c -o build/temp.linux-armv7l-cpython-311/thirdparty/streamvbyte/src/streamvbyte_zigzag.o -g -Wall -O2 -std=c99 -DSLOW5_ENABLE_MT=1 -mfpu=neon 2025-06-01T09:29:31,082 creating build/lib.linux-armv7l-cpython-311 2025-06-01T09:29:31,083 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/python/pyslow5.o build/temp.linux-armv7l-cpython-311/src/slow5.o build/temp.linux-armv7l-cpython-311/src/slow5_idx.o build/temp.linux-armv7l-cpython-311/src/slow5_misc.o build/temp.linux-armv7l-cpython-311/src/slow5_mt.o build/temp.linux-armv7l-cpython-311/src/slow5_press.o build/temp.linux-armv7l-cpython-311/thirdparty/streamvbyte/src/streamvbyte_decode.o build/temp.linux-armv7l-cpython-311/thirdparty/streamvbyte/src/streamvbyte_encode.o build/temp.linux-armv7l-cpython-311/thirdparty/streamvbyte/src/streamvbyte_zigzag.o -L. -L/usr/lib/arm-linux-gnueabihf -lm -lz -o build/lib.linux-armv7l-cpython-311/pyslow5.cpython-311-arm-linux-gnueabihf.so 2025-06-01T09:29:31,421 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-06-01T09:29:31,421 !! 2025-06-01T09:29:31,422 ******************************************************************************** 2025-06-01T09:29:31,423 Please avoid running ``setup.py`` directly. 2025-06-01T09:29:31,424 Instead, use pypa/build, pypa/installer or other 2025-06-01T09:29:31,424 standards-based tools. 2025-06-01T09:29:31,425 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-06-01T09:29:31,426 or your builds will no longer be supported. 2025-06-01T09:29:31,427 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-06-01T09:29:31,428 ******************************************************************************** 2025-06-01T09:29:31,429 !! 2025-06-01T09:29:31,429 self.initialize_options() 2025-06-01T09:29:31,453 installing to build/bdist.linux-armv7l/wheel 2025-06-01T09:29:31,453 running install 2025-06-01T09:29:31,476 running install_lib 2025-06-01T09:29:31,505 creating build/bdist.linux-armv7l/wheel 2025-06-01T09:29:31,507 copying build/lib.linux-armv7l-cpython-311/pyslow5.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/. 2025-06-01T09:29:31,575 running install_egg_info 2025-06-01T09:29:31,604 running egg_info 2025-06-01T09:29:31,634 writing pyslow5.egg-info/PKG-INFO 2025-06-01T09:29:31,637 writing dependency_links to pyslow5.egg-info/dependency_links.txt 2025-06-01T09:29:31,639 writing requirements to pyslow5.egg-info/requires.txt 2025-06-01T09:29:31,641 writing top-level names to pyslow5.egg-info/top_level.txt 2025-06-01T09:29:31,685 reading manifest file 'pyslow5.egg-info/SOURCES.txt' 2025-06-01T09:29:31,712 reading manifest template 'MANIFEST.in' 2025-06-01T09:29:31,738 writing manifest file 'pyslow5.egg-info/SOURCES.txt' 2025-06-01T09:29:31,740 Copying pyslow5.egg-info to build/bdist.linux-armv7l/wheel/./pyslow5-1.3.1-py3.11.egg-info 2025-06-01T09:29:31,752 running install_scripts 2025-06-01T09:29:31,801 creating build/bdist.linux-armv7l/wheel/pyslow5-1.3.1.dist-info/WHEEL 2025-06-01T09:29:31,804 creating '/tmp/pip-wheel-zmlmv3mc/pyslow5-1.3.1-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-06-01T09:29:32,536 adding 'pyslow5.cpython-311-arm-linux-gnueabihf.so' 2025-06-01T09:29:32,563 adding 'pyslow5-1.3.1.dist-info/METADATA' 2025-06-01T09:29:32,564 adding 'pyslow5-1.3.1.dist-info/WHEEL' 2025-06-01T09:29:32,566 adding 'pyslow5-1.3.1.dist-info/top_level.txt' 2025-06-01T09:29:32,567 adding 'pyslow5-1.3.1.dist-info/RECORD' 2025-06-01T09:29:32,585 removing build/bdist.linux-armv7l/wheel 2025-06-01T09:29:33,140 Building wheel for pyslow5 (setup.py): finished with status 'done' 2025-06-01T09:29:33,157 Created wheel for pyslow5: filename=pyslow5-1.3.1-cp311-cp311-linux_armv7l.whl size=1526849 sha256=b80381e78f1d1b65b380975cb91dabc2c6d6ea90bbc8b236d0b5d27944917e75 2025-06-01T09:29:33,159 Stored in directory: /tmp/pip-ephem-wheel-cache-lb93372m/wheels/b5/ee/4e/329e96bea125499584df629d36c94c356e653e244644bacdc6 2025-06-01T09:29:33,173 Successfully built pyslow5 2025-06-01T09:29:33,224 Removed build tracker: '/tmp/pip-build-tracker-vh1pr015'