2025-06-01T11:58:41,044 Created temporary directory: /tmp/pip-build-tracker-a6r61jv0 2025-06-01T11:58:41,045 Initialized build tracking at /tmp/pip-build-tracker-a6r61jv0 2025-06-01T11:58:41,046 Created build tracker: /tmp/pip-build-tracker-a6r61jv0 2025-06-01T11:58:41,046 Entered build tracker: /tmp/pip-build-tracker-a6r61jv0 2025-06-01T11:58:41,047 Created temporary directory: /tmp/pip-wheel-0boouyng 2025-06-01T11:58:41,051 Created temporary directory: /tmp/pip-ephem-wheel-cache-f_18_y4u 2025-06-01T11:58:41,102 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-06-01T11:58:41,105 2 location(s) to search for versions of biorefineries: 2025-06-01T11:58:41,105 * https://pypi.org/simple/biorefineries/ 2025-06-01T11:58:41,105 * https://www.piwheels.org/simple/biorefineries/ 2025-06-01T11:58:41,105 Fetching project page and analyzing links: https://pypi.org/simple/biorefineries/ 2025-06-01T11:58:41,106 Getting page https://pypi.org/simple/biorefineries/ 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https://files.pythonhosted.org/packages/54/ad/b1d223661c615f621ccf9d96d56e2cac4aff237ab7b67df89de87e97856a/biorefineries-2.24.0.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.24.0 2025-06-01T11:58:41,460 Found link https://files.pythonhosted.org/packages/cb/cd/2c6590a3707b128e2e18f88e5e8bafc11f66c696b13cd48a8d3904c1a7e9/biorefineries-2.25.0.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.25.0 2025-06-01T11:58:41,461 Found link https://files.pythonhosted.org/packages/0a/fb/ab19a7d509067bd1a3e6b5a3206353f76a20d0560a993bcc54f3834271d1/biorefineries-2.26.0.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.26.0 2025-06-01T11:58:41,462 Found link https://files.pythonhosted.org/packages/aa/11/6b1b4699e6f73e913ad9aba24dcc47b4bf71326f89560a9991da01d2ce2a/biorefineries-2.26.1.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.26.1 2025-06-01T11:58:41,463 Found link https://files.pythonhosted.org/packages/bd/27/da932b8ccd134a8cf91e3255a895f0e7b4ca5be730f4f647aaaf5707b129/biorefineries-2.26.2.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.26.2 2025-06-01T11:58:41,463 Found link https://files.pythonhosted.org/packages/a1/be/361e29090e4c191970a776e0825984963b7af2af3b3e187478dfa7fd1aeb/biorefineries-2.26.3.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.26.3 2025-06-01T11:58:41,464 Found link https://files.pythonhosted.org/packages/8c/93/3f84da15e7cae7dc3ea52b9aecbc04ec3c0a94a38a1dd37fb5ee19db62d5/biorefineries-2.27.0.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.27.0 2025-06-01T11:58:41,465 Found link https://files.pythonhosted.org/packages/fc/5b/dfbd1b69f7a3973cab60cb6b5956beea3b592f4dc52dfd5e22debaaa1eb4/biorefineries-2.28.0.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.28.0 2025-06-01T11:58:41,465 Found link https://files.pythonhosted.org/packages/a0/61/1dc078b2a9edb2aa6bbb811ef0284a2ce28ede5c47e4cdfa2a91e2af8602/biorefineries-2.29.0.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.29.0 2025-06-01T11:58:41,466 Found link https://files.pythonhosted.org/packages/43/d5/88b9e32b0aca0f72eeaa244a249a3506e535fac5aad149d9f07095eaf234/biorefineries-2.30.0.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.30.0 2025-06-01T11:58:41,467 Found link https://files.pythonhosted.org/packages/98/98/25db2013c0782c05b56be59643001bb6eb957774aab20bcde13c565dd393/biorefineries-2.31.0.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.31.0 2025-06-01T11:58:41,467 Found link https://files.pythonhosted.org/packages/e0/73/94787709c74a6024177a42f16af9934dec2d00a01fd8248e2c0783e5c4eb/biorefineries-2.32.0.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.32.0 2025-06-01T11:58:41,468 Found link https://files.pythonhosted.org/packages/00/b3/a660dd043e4da0555f31eb963f6db57871d72ea292e21ac069e07e08261a/biorefineries-2.32.1.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.32.1 2025-06-01T11:58:41,469 Found link https://files.pythonhosted.org/packages/f5/df/e2806eb3a5d1cc2fce1d47b9eee568041b7ba168e5f79a254e40bc31d567/biorefineries-2.32.2.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.32.2 2025-06-01T11:58:41,470 Found link https://files.pythonhosted.org/packages/1a/01/a509b9fa25b473c4946e5d0e473ac9e8487155fcde435faf732381059ed3/biorefineries-2.34.0.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.34.0 2025-06-01T11:58:41,471 Found link https://files.pythonhosted.org/packages/88/99/a281c21d0fa3f18a3f0b1305ef0d8f37af2007be26cfaa2fdbd18f0e38c4/biorefineries-2.34.1.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.34.1 2025-06-01T11:58:41,471 Found link https://files.pythonhosted.org/packages/a5/7c/75c89a881b44fd613e1a726018ff2e990c7cd004b99c373e001b22d3e7da/biorefineries-2.34.2.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.34.2 2025-06-01T11:58:41,472 Found link https://files.pythonhosted.org/packages/d0/18/21936150b0aaced289ca0ce66b8c1849aea0e6b697c37c30366c4544bc3c/biorefineries-2.34.3.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.34.3 2025-06-01T11:58:41,473 Found link https://files.pythonhosted.org/packages/eb/30/282559d3858fee72e9ac2f0243c9a6e2d6107c452cc0a2a81c800c08f0da/biorefineries-2.34.4.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.34.4 2025-06-01T11:58:41,473 Found link https://files.pythonhosted.org/packages/7f/a2/965957e84893d444df2ac691b41796b08a90c5135226d76b2199f6cac473/biorefineries-2.34.5.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.34.5 2025-06-01T11:58:41,475 Found link https://files.pythonhosted.org/packages/de/e5/75d96878c9156b59227c4b9587466d58b879f91b48ae509ed2d44a604f58/biorefineries-2.34.6.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.34.6 2025-06-01T11:58:41,475 Found link https://files.pythonhosted.org/packages/dc/f0/7645088da65009a981a08e0d0c7e21342e4fa9e7a1ab0392ed25e88c63a7/biorefineries-2.34.7.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.34.7 2025-06-01T11:58:41,476 Found link https://files.pythonhosted.org/packages/24/6f/2fbd894ecce9381baa00fa7d057bbc742b1665d759149b70b6a41ca8b045/biorefineries-2.34.8.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.34.8 2025-06-01T11:58:41,477 Found link https://files.pythonhosted.org/packages/e0/fb/df23010230202a6caf5a966342497ab01795297ce3ee4212b15143e8c5ce/biorefineries-2.34.9.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.34.9 2025-06-01T11:58:41,477 Found link https://files.pythonhosted.org/packages/90/35/ed933b7d09f1f4b9de3c0f16e1092516022744ca6240c828e86d15988fc4/biorefineries-2.34.10.tar.gz (from https://pypi.org/simple/biorefineries/) (requires-python:>=3.9), version: 2.34.10 2025-06-01T11:58:41,478 Fetching project page and analyzing links: https://www.piwheels.org/simple/biorefineries/ 2025-06-01T11:58:41,479 Getting page https://www.piwheels.org/simple/biorefineries/ 2025-06-01T11:58:41,480 Found index url https://www.piwheels.org/simple/ 2025-06-01T11:58:41,664 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biorefineries/ 2025-06-01T11:58:42,328 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biorefineries/ 2025-06-01T11:58:43,494 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biorefineries/ 2025-06-01T11:58:45,679 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biorefineries/ 2025-06-01T11:58:49,852 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/biorefineries/ 2025-06-01T11:58:50,024 Could not fetch URL https://www.piwheels.org/simple/biorefineries/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/biorefineries/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping 2025-06-01T11:58:50,026 Skipping link: not a file: https://www.piwheels.org/simple/biorefineries/ 2025-06-01T11:58:50,027 Skipping link: not a file: https://pypi.org/simple/biorefineries/ 2025-06-01T11:58:50,062 Given no hashes to check 1 links for project 'biorefineries': discarding no candidates 2025-06-01T11:58:50,065 Collecting biorefineries==2.34.10 2025-06-01T11:58:50,067 Created temporary directory: /tmp/pip-unpack-5e321xp6 2025-06-01T11:58:50,342 Downloading biorefineries-2.34.10.tar.gz (22.6 MB) 2025-06-01T11:58:56,181 Added biorefineries==2.34.10 from https://files.pythonhosted.org/packages/90/35/ed933b7d09f1f4b9de3c0f16e1092516022744ca6240c828e86d15988fc4/biorefineries-2.34.10.tar.gz to build tracker '/tmp/pip-build-tracker-a6r61jv0' 2025-06-01T11:58:56,184 Running setup.py (path:/tmp/pip-wheel-0boouyng/biorefineries_95cccf2ecf79415282171fe59ddc05aa/setup.py) egg_info for package biorefineries 2025-06-01T11:58:56,185 Created temporary directory: /tmp/pip-pip-egg-info-ibf_2q6y 2025-06-01T11:58:56,186 Preparing metadata (setup.py): started 2025-06-01T11:58:56,187 Running command python setup.py egg_info 2025-06-01T11:58:57,352 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-06-01T11:58:57,353 !! 2025-06-01T11:58:57,354 ******************************************************************************** 2025-06-01T11:58:57,354 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-06-01T11:58:57,355 License :: OSI Approved :: MIT License 2025-06-01T11:58:57,356 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-01T11:58:57,357 ******************************************************************************** 2025-06-01T11:58:57,358 !! 2025-06-01T11:58:57,359 self._finalize_license_expression() 2025-06-01T11:58:57,383 running egg_info 2025-06-01T11:58:57,412 creating /tmp/pip-pip-egg-info-ibf_2q6y/biorefineries.egg-info 2025-06-01T11:58:57,413 writing /tmp/pip-pip-egg-info-ibf_2q6y/biorefineries.egg-info/PKG-INFO 2025-06-01T11:58:57,416 writing dependency_links to /tmp/pip-pip-egg-info-ibf_2q6y/biorefineries.egg-info/dependency_links.txt 2025-06-01T11:58:57,418 writing requirements to /tmp/pip-pip-egg-info-ibf_2q6y/biorefineries.egg-info/requires.txt 2025-06-01T11:58:57,419 writing top-level names to /tmp/pip-pip-egg-info-ibf_2q6y/biorefineries.egg-info/top_level.txt 2025-06-01T11:58:57,421 writing manifest file '/tmp/pip-pip-egg-info-ibf_2q6y/biorefineries.egg-info/SOURCES.txt' 2025-06-01T11:58:57,609 reading manifest file '/tmp/pip-pip-egg-info-ibf_2q6y/biorefineries.egg-info/SOURCES.txt' 2025-06-01T11:58:57,611 adding license file 'LICENSE.txt' 2025-06-01T11:58:57,622 writing manifest file '/tmp/pip-pip-egg-info-ibf_2q6y/biorefineries.egg-info/SOURCES.txt' 2025-06-01T11:58:57,727 Preparing metadata (setup.py): finished with status 'done' 2025-06-01T11:58:57,731 Source in /tmp/pip-wheel-0boouyng/biorefineries_95cccf2ecf79415282171fe59ddc05aa has version 2.34.10, which satisfies requirement biorefineries==2.34.10 from https://files.pythonhosted.org/packages/90/35/ed933b7d09f1f4b9de3c0f16e1092516022744ca6240c828e86d15988fc4/biorefineries-2.34.10.tar.gz 2025-06-01T11:58:57,732 Removed biorefineries==2.34.10 from https://files.pythonhosted.org/packages/90/35/ed933b7d09f1f4b9de3c0f16e1092516022744ca6240c828e86d15988fc4/biorefineries-2.34.10.tar.gz from build tracker '/tmp/pip-build-tracker-a6r61jv0' 2025-06-01T11:58:57,739 Created temporary directory: /tmp/pip-unpack-zoyoro29 2025-06-01T11:58:57,740 Created temporary directory: /tmp/pip-unpack-4u6a_597 2025-06-01T11:58:57,741 Building wheels for collected packages: biorefineries 2025-06-01T11:58:57,745 Created temporary directory: /tmp/pip-wheel-l5us99iq 2025-06-01T11:58:57,746 DEPRECATION: Building 'biorefineries' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'biorefineries'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-06-01T11:58:57,747 Building wheel for biorefineries (setup.py): started 2025-06-01T11:58:57,749 Destination directory: /tmp/pip-wheel-l5us99iq 2025-06-01T11:58:57,749 Running command python setup.py bdist_wheel 2025-06-01T11:58:58,596 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-06-01T11:58:58,597 !! 2025-06-01T11:58:58,598 ******************************************************************************** 2025-06-01T11:58:58,598 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-06-01T11:58:58,599 License :: OSI Approved :: MIT License 2025-06-01T11:58:58,600 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-01T11:58:58,601 ******************************************************************************** 2025-06-01T11:58:58,602 !! 2025-06-01T11:58:58,602 self._finalize_license_expression() 2025-06-01T11:58:58,603 running bdist_wheel 2025-06-01T11:58:58,741 running build 2025-06-01T11:58:58,742 running build_py 2025-06-01T11:58:58,774 creating build/lib/biorefineries 2025-06-01T11:58:58,777 copying biorefineries/__init__.py -> build/lib/biorefineries 2025-06-01T11:58:58,810 creating build/lib/biorefineries/cane 2025-06-01T11:58:58,811 copying biorefineries/cane/oil_extraction.py -> build/lib/biorefineries/cane 2025-06-01T11:58:58,814 copying biorefineries/cane/biorefinery.py -> build/lib/biorefineries/cane 2025-06-01T11:58:58,820 copying biorefineries/cane/feature_mockups.py -> build/lib/biorefineries/cane 2025-06-01T11:58:58,823 copying biorefineries/cane/configurations_biomass_yield_analysis.npy -> build/lib/biorefineries/cane 2025-06-01T11:58:58,828 copying biorefineries/cane/README.md -> build/lib/biorefineries/cane 2025-06-01T11:58:58,831 copying biorefineries/cane/rename_soon.py -> build/lib/biorefineries/cane 2025-06-01T11:58:58,833 copying biorefineries/cane/chemicals.py -> build/lib/biorefineries/cane 2025-06-01T11:58:58,836 copying biorefineries/cane/__init__.py -> build/lib/biorefineries/cane 2025-06-01T11:58:58,839 copying biorefineries/cane/composition.py -> build/lib/biorefineries/cane 2025-06-01T11:58:58,842 copying biorefineries/cane/parse_configuration.py -> build/lib/biorefineries/cane 2025-06-01T11:58:58,845 copying biorefineries/cane/units.py -> build/lib/biorefineries/cane 2025-06-01T11:58:58,848 copying biorefineries/cane/uncertainty_plots.py -> build/lib/biorefineries/cane 2025-06-01T11:58:58,854 copying biorefineries/cane/contour_plots.py -> build/lib/biorefineries/cane 2025-06-01T11:58:58,858 copying biorefineries/cane/tables.py -> build/lib/biorefineries/cane 2025-06-01T11:58:58,861 copying biorefineries/cane/results.py -> build/lib/biorefineries/cane 2025-06-01T11:58:58,864 copying biorefineries/cane/evaluation.py -> build/lib/biorefineries/cane 2025-06-01T11:58:58,868 copying biorefineries/cane/process_settings.py -> build/lib/biorefineries/cane 2025-06-01T11:58:58,870 copying biorefineries/cane/streams.py -> build/lib/biorefineries/cane 2025-06-01T11:58:58,872 creating build/lib/biorefineries/cane/systems 2025-06-01T11:58:58,873 copying biorefineries/cane/systems/sugar.py -> build/lib/biorefineries/cane/systems 2025-06-01T11:58:58,876 copying biorefineries/cane/systems/lipid_extraction.py -> build/lib/biorefineries/cane/systems 2025-06-01T11:58:58,879 copying biorefineries/cane/systems/__init__.py -> build/lib/biorefineries/cane/systems 2025-06-01T11:58:58,882 copying biorefineries/cane/systems/biodiesel.py -> build/lib/biorefineries/cane/systems 2025-06-01T11:58:58,885 copying biorefineries/cane/systems/juicing.py -> build/lib/biorefineries/cane/systems 2025-06-01T11:58:58,888 copying biorefineries/cane/systems/bagasse.py -> build/lib/biorefineries/cane/systems 2025-06-01T11:58:58,890 copying biorefineries/cane/systems/lipidcane.py -> build/lib/biorefineries/cane/systems 2025-06-01T11:58:58,893 copying biorefineries/cane/systems/cellulosic_biodiesel.py -> build/lib/biorefineries/cane/systems 2025-06-01T11:58:58,896 copying biorefineries/cane/systems/biodiesel_actag.py -> build/lib/biorefineries/cane/systems 2025-06-01T11:58:58,898 copying biorefineries/cane/systems/pretreatment.py -> build/lib/biorefineries/cane/systems 2025-06-01T11:58:58,901 copying biorefineries/cane/systems/fermentation.py -> build/lib/biorefineries/cane/systems 2025-06-01T11:58:58,904 copying biorefineries/cane/systems/cellulosic_biodiesel_actag.py -> build/lib/biorefineries/cane/systems 2025-06-01T11:58:58,907 creating build/lib/biorefineries/cane/systems/oilcane 2025-06-01T11:58:58,908 copying biorefineries/cane/systems/oilcane/biodiesel_ethanol.py -> build/lib/biorefineries/cane/systems/oilcane 2025-06-01T11:58:58,911 copying biorefineries/cane/systems/oilcane/__init__.py -> build/lib/biorefineries/cane/systems/oilcane 2025-06-01T11:58:58,914 copying biorefineries/cane/systems/oilcane/cellulosic_crude_oil_ethanol.py -> build/lib/biorefineries/cane/systems/oilcane 2025-06-01T11:58:58,917 copying biorefineries/cane/systems/oilcane/crude_oil_ethanol.py -> build/lib/biorefineries/cane/systems/oilcane 2025-06-01T11:58:58,919 copying biorefineries/cane/systems/oilcane/cellulosic_biodiesel_ethanol.py -> build/lib/biorefineries/cane/systems/oilcane 2025-06-01T11:58:58,922 creating build/lib/biorefineries/cane/systems/sugarcane 2025-06-01T11:58:58,923 copying biorefineries/cane/systems/sugarcane/ethanol.py -> build/lib/biorefineries/cane/systems/sugarcane 2025-06-01T11:58:58,927 copying biorefineries/cane/systems/sugarcane/sugar_ethanol.py -> build/lib/biorefineries/cane/systems/sugarcane 2025-06-01T11:58:58,929 copying biorefineries/cane/systems/sugarcane/__init__.py -> build/lib/biorefineries/cane/systems/sugarcane 2025-06-01T11:58:58,932 copying biorefineries/cane/systems/sugarcane/cellulosic_ethanol.py -> build/lib/biorefineries/cane/systems/sugarcane 2025-06-01T11:58:58,934 creating build/lib/biorefineries/milk 2025-06-01T11:58:58,936 copying biorefineries/milk/tests.py -> build/lib/biorefineries/milk 2025-06-01T11:58:58,938 copying biorefineries/milk/biorefinery.py -> build/lib/biorefineries/milk 2025-06-01T11:58:58,942 copying biorefineries/milk/README.md -> build/lib/biorefineries/milk 2025-06-01T11:58:58,944 copying biorefineries/milk/chemicals.py -> build/lib/biorefineries/milk 2025-06-01T11:58:58,947 copying biorefineries/milk/__init__.py -> build/lib/biorefineries/milk 2025-06-01T11:58:58,950 copying biorefineries/milk/units.py -> build/lib/biorefineries/milk 2025-06-01T11:58:58,952 copying biorefineries/milk/data.py -> build/lib/biorefineries/milk 2025-06-01T11:58:58,955 copying biorefineries/milk/systems.py -> build/lib/biorefineries/milk 2025-06-01T11:58:58,958 copying biorefineries/milk/plots.py -> build/lib/biorefineries/milk 2025-06-01T11:58:58,961 copying biorefineries/milk/process_settings.py -> build/lib/biorefineries/milk 2025-06-01T11:58:58,963 copying biorefineries/milk/GalactoOligoSaccharideProcess.xlsx -> build/lib/biorefineries/milk 2025-06-01T11:58:58,994 copying biorefineries/milk/uncertainty.py -> build/lib/biorefineries/milk 2025-06-01T11:58:58,997 creating build/lib/biorefineries/milk/images 2025-06-01T11:58:58,998 copying biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate_GlucoseMedia.png -> build/lib/biorefineries/milk/images 2025-06-01T11:58:59,009 copying biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate.svg -> build/lib/biorefineries/milk/images 2025-06-01T11:58:59,013 copying biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate.png -> build/lib/biorefineries/milk/images 2025-06-01T11:58:59,021 copying biorefineries/milk/images/MSP_across_yield_productivity_GlucoseMedia.svg -> build/lib/biorefineries/milk/images 2025-06-01T11:58:59,026 copying biorefineries/milk/images/MSP_across_yield_productivity_GlucoseMedia.png -> build/lib/biorefineries/milk/images 2025-06-01T11:58:59,036 copying biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate_GlucoseMedia.svg -> build/lib/biorefineries/milk/images 2025-06-01T11:58:59,041 creating build/lib/biorefineries/milk/results 2025-06-01T11:58:59,042 copying biorefineries/milk/results/MSP_GWP_titer_productivity_AcEster_UFPermeate_GlucoseMedia.npy -> build/lib/biorefineries/milk/results 2025-06-01T11:58:59,045 copying biorefineries/milk/results/MSP_GWP_titer_productivity_AcEster_UFPermeate.npy -> build/lib/biorefineries/milk/results 2025-06-01T11:58:59,048 copying biorefineries/milk/results/MSP_GWP_titer_productivity_AcEster_GlucoseMedia.npy -> build/lib/biorefineries/milk/results 2025-06-01T11:58:59,051 creating build/lib/biorefineries/cane/data 2025-06-01T11:58:59,052 copying biorefineries/cane/data/RIN_prices_2022.csv -> build/lib/biorefineries/cane/data 2025-06-01T11:58:59,061 copying biorefineries/cane/data/cane_composition_data_full.xlsx -> build/lib/biorefineries/cane/data 2025-06-01T11:58:59,064 copying biorefineries/cane/data/RIN_prices_2023.csv -> build/lib/biorefineries/cane/data 2025-06-01T11:58:59,071 copying biorefineries/cane/data/cane_composition_data.xlsx -> build/lib/biorefineries/cane/data 2025-06-01T11:58:59,075 copying biorefineries/cane/data/lca_characterization_factors.py -> build/lib/biorefineries/cane/data 2025-06-01T11:58:59,077 copying biorefineries/cane/data/microbial_oil_baseline.py -> build/lib/biorefineries/cane/data 2025-06-01T11:58:59,080 copying biorefineries/cane/data/price_distributions_2022.py -> build/lib/biorefineries/cane/data 2025-06-01T11:58:59,083 copying biorefineries/cane/data/price_distributions_2023.py -> build/lib/biorefineries/cane/data 2025-06-01T11:58:59,086 creating build/lib/biorefineries/cellulosic 2025-06-01T11:58:59,087 copying biorefineries/cellulosic/biorefinery.py -> build/lib/biorefineries/cellulosic 2025-06-01T11:58:59,090 copying biorefineries/cellulosic/chemicals.py -> build/lib/biorefineries/cellulosic 2025-06-01T11:58:59,094 copying biorefineries/cellulosic/__init__.py -> build/lib/biorefineries/cellulosic 2025-06-01T11:58:59,096 copying biorefineries/cellulosic/units.py -> build/lib/biorefineries/cellulosic 2025-06-01T11:58:59,100 copying biorefineries/cellulosic/process_settings.py -> build/lib/biorefineries/cellulosic 2025-06-01T11:58:59,102 copying biorefineries/cellulosic/streams.py -> build/lib/biorefineries/cellulosic 2025-06-01T11:58:59,105 creating build/lib/biorefineries/cellulosic/systems 2025-06-01T11:58:59,106 copying biorefineries/cellulosic/systems/__init__.py -> build/lib/biorefineries/cellulosic/systems 2025-06-01T11:58:59,109 copying biorefineries/cellulosic/systems/cellulosic_ethanol.py -> build/lib/biorefineries/cellulosic/systems 2025-06-01T11:58:59,111 creating build/lib/biorefineries/cellulosic/systems/fermentation 2025-06-01T11:58:59,113 copying biorefineries/cellulosic/systems/fermentation/integrated_bioprocess.py -> build/lib/biorefineries/cellulosic/systems/fermentation 2025-06-01T11:58:59,116 copying biorefineries/cellulosic/systems/fermentation/cofermentation.py -> build/lib/biorefineries/cellulosic/systems/fermentation 2025-06-01T11:58:59,118 copying biorefineries/cellulosic/systems/fermentation/__init__.py -> build/lib/biorefineries/cellulosic/systems/fermentation 2025-06-01T11:58:59,121 copying biorefineries/cellulosic/systems/fermentation/saccharification.py -> build/lib/biorefineries/cellulosic/systems/fermentation 2025-06-01T11:58:59,123 copying biorefineries/cellulosic/systems/fermentation/simultaneous_saccharification_cofermentation.py -> build/lib/biorefineries/cellulosic/systems/fermentation 2025-06-01T11:58:59,126 copying biorefineries/cellulosic/systems/fermentation/general_interface.py -> build/lib/biorefineries/cellulosic/systems/fermentation 2025-06-01T11:58:59,130 creating build/lib/biorefineries/cellulosic/systems/pretreatment 2025-06-01T11:58:59,131 copying biorefineries/cellulosic/systems/pretreatment/hot_water.py -> build/lib/biorefineries/cellulosic/systems/pretreatment 2025-06-01T11:58:59,134 copying biorefineries/cellulosic/systems/pretreatment/__init__.py -> build/lib/biorefineries/cellulosic/systems/pretreatment 2025-06-01T11:58:59,136 copying biorefineries/cellulosic/systems/pretreatment/alkaline.py -> build/lib/biorefineries/cellulosic/systems/pretreatment 2025-06-01T11:58:59,139 copying biorefineries/cellulosic/systems/pretreatment/dilute_acid.py -> build/lib/biorefineries/cellulosic/systems/pretreatment 2025-06-01T11:58:59,141 copying biorefineries/cellulosic/systems/pretreatment/ammonia_fiber_expansion.py -> build/lib/biorefineries/cellulosic/systems/pretreatment 2025-06-01T11:58:59,144 creating build/lib/biorefineries/ethanol 2025-06-01T11:58:59,145 copying biorefineries/ethanol/__init__.py -> build/lib/biorefineries/ethanol 2025-06-01T11:58:59,147 copying biorefineries/ethanol/systems.py -> build/lib/biorefineries/ethanol 2025-06-01T11:58:59,150 copying biorefineries/ethanol/streams.py -> build/lib/biorefineries/ethanol 2025-06-01T11:58:59,152 creating build/lib/biorefineries/biodiesel 2025-06-01T11:58:59,153 copying biorefineries/biodiesel/__init__.py -> build/lib/biorefineries/biodiesel 2025-06-01T11:58:59,156 copying biorefineries/biodiesel/systems.py -> build/lib/biorefineries/biodiesel 2025-06-01T11:58:59,159 copying biorefineries/biodiesel/streams.py -> build/lib/biorefineries/biodiesel 2025-06-01T11:58:59,162 creating build/lib/biorefineries/biodiesel/units 2025-06-01T11:58:59,163 copying biorefineries/biodiesel/units/skimming_tank.py -> build/lib/biorefineries/biodiesel/units 2025-06-01T11:58:59,166 copying biorefineries/biodiesel/units/transesterification.py -> build/lib/biorefineries/biodiesel/units 2025-06-01T11:58:59,169 copying biorefineries/biodiesel/units/__init__.py -> build/lib/biorefineries/biodiesel/units 2025-06-01T11:58:59,171 copying biorefineries/biodiesel/units/glycerolysis_reactor.py -> build/lib/biorefineries/biodiesel/units 2025-06-01T11:58:59,174 creating build/lib/biorefineries/tea 2025-06-01T11:58:59,175 copying biorefineries/tea/__init__.py -> build/lib/biorefineries/tea 2025-06-01T11:58:59,178 copying biorefineries/tea/cellulosic_ethanol_tea.py -> build/lib/biorefineries/tea 2025-06-01T11:58:59,181 copying biorefineries/tea/conventional_ethanol_tea.py -> build/lib/biorefineries/tea 2025-06-01T11:58:59,183 creating build/lib/biorefineries/lipidcane 2025-06-01T11:58:59,185 copying biorefineries/lipidcane/_system.py -> build/lib/biorefineries/lipidcane 2025-06-01T11:58:59,187 copying biorefineries/lipidcane/_tea.py -> build/lib/biorefineries/lipidcane 2025-06-01T11:58:59,189 copying biorefineries/lipidcane/__init__.py -> build/lib/biorefineries/lipidcane 2025-06-01T11:58:59,192 copying biorefineries/lipidcane/_webapp_model.py -> build/lib/biorefineries/lipidcane 2025-06-01T11:58:59,195 copying biorefineries/lipidcane/_chemicals.py -> build/lib/biorefineries/lipidcane 2025-06-01T11:58:59,197 copying biorefineries/lipidcane/_process_settings.py -> build/lib/biorefineries/lipidcane 2025-06-01T11:58:59,200 copying biorefineries/lipidcane/model.py -> build/lib/biorefineries/lipidcane 2025-06-01T11:58:59,203 copying biorefineries/lipidcane/README.rst -> build/lib/biorefineries/lipidcane 2025-06-01T11:58:59,206 copying biorefineries/lipidcane/_feedstock_analysis.py -> build/lib/biorefineries/lipidcane 2025-06-01T11:58:59,208 copying biorefineries/lipidcane/sankey_plot.ipynb -> build/lib/biorefineries/lipidcane 2025-06-01T11:58:59,266 copying biorefineries/lipidcane/_analysis.py -> build/lib/biorefineries/lipidcane 2025-06-01T11:58:59,268 copying biorefineries/lipidcane/_plot_spearman.py -> build/lib/biorefineries/lipidcane 2025-06-01T11:58:59,271 copying biorefineries/lipidcane/_plot_uncertainty.py -> build/lib/biorefineries/lipidcane 2025-06-01T11:58:59,273 creating build/lib/biorefineries/oilcane 2025-06-01T11:58:59,274 copying biorefineries/oilcane/_line_plots.py -> build/lib/biorefineries/oilcane 2025-06-01T11:58:59,277 copying biorefineries/oilcane/utils.py -> build/lib/biorefineries/oilcane 2025-06-01T11:58:59,280 copying biorefineries/oilcane/_parse_configuration.py -> build/lib/biorefineries/oilcane 2025-06-01T11:58:59,282 copying biorefineries/oilcane/sankey_energy.ipynb -> build/lib/biorefineries/oilcane 2025-06-01T11:58:59,348 copying biorefineries/oilcane/lca_benchmarks.py -> build/lib/biorefineries/oilcane 2025-06-01T11:58:59,350 copying biorefineries/oilcane/webapp_model.py -> build/lib/biorefineries/oilcane 2025-06-01T11:58:59,352 copying biorefineries/oilcane/README.md -> build/lib/biorefineries/oilcane 2025-06-01T11:58:59,355 copying biorefineries/oilcane/_evaluation.py -> build/lib/biorefineries/oilcane 2025-06-01T11:58:59,357 copying biorefineries/oilcane/_tea.py -> build/lib/biorefineries/oilcane 2025-06-01T11:58:59,359 copying biorefineries/oilcane/__init__.py -> build/lib/biorefineries/oilcane 2025-06-01T11:58:59,361 copying biorefineries/oilcane/_tables.py -> build/lib/biorefineries/oilcane 2025-06-01T11:58:59,364 copying biorefineries/oilcane/_chemicals.py -> build/lib/biorefineries/oilcane 2025-06-01T11:58:59,367 copying biorefineries/oilcane/units.py -> build/lib/biorefineries/oilcane 2025-06-01T11:58:59,369 copying biorefineries/oilcane/systems.py -> build/lib/biorefineries/oilcane 2025-06-01T11:58:59,372 copying biorefineries/oilcane/_load_data.py -> build/lib/biorefineries/oilcane 2025-06-01T11:58:59,375 copying biorefineries/oilcane/_contour_plots.py -> build/lib/biorefineries/oilcane 2025-06-01T11:58:59,378 copying biorefineries/oilcane/_feature_mockups.py -> build/lib/biorefineries/oilcane 2025-06-01T11:58:59,380 copying biorefineries/oilcane/sankey_plot.ipynb -> build/lib/biorefineries/oilcane 2025-06-01T11:58:59,385 copying biorefineries/oilcane/_uncertainty_plots.py -> build/lib/biorefineries/oilcane 2025-06-01T11:58:59,389 creating build/lib/biorefineries/cornstover 2025-06-01T11:58:59,390 copying biorefineries/cornstover/_plot_single_point.py -> build/lib/biorefineries/cornstover 2025-06-01T11:58:59,394 copying biorefineries/cornstover/webapp_model.py -> build/lib/biorefineries/cornstover 2025-06-01T11:58:59,397 copying biorefineries/cornstover/_tea.py -> build/lib/biorefineries/cornstover 2025-06-01T11:58:59,400 copying biorefineries/cornstover/__init__.py -> build/lib/biorefineries/cornstover 2025-06-01T11:58:59,402 copying biorefineries/cornstover/_chemicals.py -> build/lib/biorefineries/cornstover 2025-06-01T11:58:59,406 copying biorefineries/cornstover/_process_settings.py -> build/lib/biorefineries/cornstover 2025-06-01T11:58:59,409 copying biorefineries/cornstover/units.py -> build/lib/biorefineries/cornstover 2025-06-01T11:58:59,411 copying biorefineries/cornstover/_switchgrass.py -> build/lib/biorefineries/cornstover 2025-06-01T11:58:59,414 copying biorefineries/cornstover/systems.py -> build/lib/biorefineries/cornstover 2025-06-01T11:58:59,417 copying biorefineries/cornstover/model.py -> build/lib/biorefineries/cornstover 2025-06-01T11:58:59,420 copying biorefineries/cornstover/README.rst -> build/lib/biorefineries/cornstover 2025-06-01T11:58:59,424 copying biorefineries/cornstover/_legacy_code.py -> build/lib/biorefineries/cornstover 2025-06-01T11:58:59,427 copying biorefineries/cornstover/_sankey.py -> build/lib/biorefineries/cornstover 2025-06-01T11:58:59,429 copying biorefineries/cornstover/_plot_bars.py -> build/lib/biorefineries/cornstover 2025-06-01T11:58:59,432 copying biorefineries/cornstover/_analysis.py -> build/lib/biorefineries/cornstover 2025-06-01T11:58:59,435 copying biorefineries/cornstover/_plot_spearman.py -> build/lib/biorefineries/cornstover 2025-06-01T11:58:59,438 copying biorefineries/cornstover/_plot_uncertainty.py -> build/lib/biorefineries/cornstover 2025-06-01T11:58:59,441 creating build/lib/biorefineries/corn 2025-06-01T11:58:59,442 copying biorefineries/corn/utils.py -> build/lib/biorefineries/corn 2025-06-01T11:58:59,445 copying biorefineries/corn/biorefinery.py -> build/lib/biorefineries/corn 2025-06-01T11:58:59,448 copying biorefineries/corn/README.md -> build/lib/biorefineries/corn 2025-06-01T11:58:59,451 copying biorefineries/corn/chemicals.py -> build/lib/biorefineries/corn 2025-06-01T11:58:59,454 copying biorefineries/corn/__init__.py -> build/lib/biorefineries/corn 2025-06-01T11:58:59,456 copying biorefineries/corn/units.py -> build/lib/biorefineries/corn 2025-06-01T11:58:59,460 copying biorefineries/corn/systems.py -> build/lib/biorefineries/corn 2025-06-01T11:58:59,463 copying biorefineries/corn/tea.py -> build/lib/biorefineries/corn 2025-06-01T11:58:59,466 copying biorefineries/corn/process_settings.py -> build/lib/biorefineries/corn 2025-06-01T11:58:59,469 creating build/lib/biorefineries/lactic 2025-06-01T11:58:59,471 copying biorefineries/lactic/utils.py -> build/lib/biorefineries/lactic 2025-06-01T11:58:59,474 copying biorefineries/lactic/_profile.py -> build/lib/biorefineries/lactic 2025-06-01T11:58:59,477 copying biorefineries/lactic/_tea.py -> build/lib/biorefineries/lactic 2025-06-01T11:58:59,480 copying biorefineries/lactic/__init__.py -> build/lib/biorefineries/lactic 2025-06-01T11:58:59,483 copying biorefineries/lactic/_chemicals.py -> build/lib/biorefineries/lactic 2025-06-01T11:58:59,486 copying biorefineries/lactic/_process_settings.py -> build/lib/biorefineries/lactic 2025-06-01T11:58:59,489 copying biorefineries/lactic/_units.py -> build/lib/biorefineries/lactic 2025-06-01T11:58:59,494 copying biorefineries/lactic/models.py -> build/lib/biorefineries/lactic 2025-06-01T11:58:59,498 copying biorefineries/lactic/systems.py -> build/lib/biorefineries/lactic 2025-06-01T11:58:59,501 copying biorefineries/lactic/README.rst -> build/lib/biorefineries/lactic 2025-06-01T11:58:59,504 copying biorefineries/lactic/_processes.py -> build/lib/biorefineries/lactic 2025-06-01T11:58:59,508 creating build/lib/biorefineries/lactic/analyses 2025-06-01T11:58:59,509 copying biorefineries/lactic/analyses/1_uncertainties.py -> build/lib/biorefineries/lactic/analyses 2025-06-01T11:58:59,513 copying biorefineries/lactic/analyses/3_feedstock_carb-price.py -> build/lib/biorefineries/lactic/analyses 2025-06-01T11:58:59,516 copying biorefineries/lactic/analyses/2_fermentation_TRY.py -> build/lib/biorefineries/lactic/analyses 2025-06-01T11:58:59,519 creating build/lib/biorefineries/sugarcane 2025-06-01T11:58:59,520 copying biorefineries/sugarcane/_tea.py -> build/lib/biorefineries/sugarcane 2025-06-01T11:58:59,523 copying biorefineries/sugarcane/__init__.py -> build/lib/biorefineries/sugarcane 2025-06-01T11:58:59,526 copying biorefineries/sugarcane/_chemicals.py -> build/lib/biorefineries/sugarcane 2025-06-01T11:58:59,528 copying biorefineries/sugarcane/_process_settings.py -> build/lib/biorefineries/sugarcane 2025-06-01T11:58:59,531 copying biorefineries/sugarcane/systems.py -> build/lib/biorefineries/sugarcane 2025-06-01T11:58:59,534 copying biorefineries/sugarcane/model.py -> build/lib/biorefineries/sugarcane 2025-06-01T11:58:59,536 copying biorefineries/sugarcane/README.rst -> build/lib/biorefineries/sugarcane 2025-06-01T11:58:59,539 creating build/lib/biorefineries/fattyalcohols 2025-06-01T11:58:59,540 copying biorefineries/fattyalcohols/utils.py -> build/lib/biorefineries/fattyalcohols 2025-06-01T11:58:59,543 copying biorefineries/fattyalcohols/_system.py -> build/lib/biorefineries/fattyalcohols 2025-06-01T11:58:59,546 copying biorefineries/fattyalcohols/streams.yaml -> build/lib/biorefineries/fattyalcohols 2025-06-01T11:58:59,549 copying biorefineries/fattyalcohols/chemicals.yaml -> build/lib/biorefineries/fattyalcohols 2025-06-01T11:58:59,551 copying biorefineries/fattyalcohols/_tea.py -> build/lib/biorefineries/fattyalcohols 2025-06-01T11:58:59,554 copying biorefineries/fattyalcohols/__init__.py -> build/lib/biorefineries/fattyalcohols 2025-06-01T11:58:59,557 copying biorefineries/fattyalcohols/_chemicals.py -> build/lib/biorefineries/fattyalcohols 2025-06-01T11:58:59,559 copying biorefineries/fattyalcohols/_process_specifications.py -> build/lib/biorefineries/fattyalcohols 2025-06-01T11:58:59,562 copying biorefineries/fattyalcohols/README.rst -> build/lib/biorefineries/fattyalcohols 2025-06-01T11:58:59,565 copying biorefineries/fattyalcohols/_fattyalcohol_production.py -> build/lib/biorefineries/fattyalcohols 2025-06-01T11:58:59,568 creating build/lib/biorefineries/fattyalcohols/units 2025-06-01T11:58:59,569 copying biorefineries/fattyalcohols/units/slle_centrifuge.py -> build/lib/biorefineries/fattyalcohols/units 2025-06-01T11:58:59,572 copying biorefineries/fattyalcohols/units/__init__.py -> build/lib/biorefineries/fattyalcohols/units 2025-06-01T11:58:59,575 copying biorefineries/fattyalcohols/units/fatty_alcohol_bioreactor.py -> build/lib/biorefineries/fattyalcohols/units 2025-06-01T11:58:59,578 creating build/lib/biorefineries/LAOs 2025-06-01T11:58:59,579 copying biorefineries/LAOs/utils.py -> build/lib/biorefineries/LAOs 2025-06-01T11:58:59,582 copying biorefineries/LAOs/_system.py -> build/lib/biorefineries/LAOs 2025-06-01T11:58:59,585 copying biorefineries/LAOs/streams.yaml -> build/lib/biorefineries/LAOs 2025-06-01T11:58:59,588 copying biorefineries/LAOs/chemicals.yaml -> build/lib/biorefineries/LAOs 2025-06-01T11:58:59,590 copying biorefineries/LAOs/_tea.py -> build/lib/biorefineries/LAOs 2025-06-01T11:58:59,593 copying biorefineries/LAOs/__init__.py -> build/lib/biorefineries/LAOs 2025-06-01T11:58:59,596 copying biorefineries/LAOs/_chemicals.py -> build/lib/biorefineries/LAOs 2025-06-01T11:58:59,599 copying biorefineries/LAOs/_process_specifications.py -> build/lib/biorefineries/LAOs 2025-06-01T11:58:59,602 copying biorefineries/LAOs/README.rst -> build/lib/biorefineries/LAOs 2025-06-01T11:58:59,605 copying biorefineries/LAOs/analysis.ipynb -> build/lib/biorefineries/LAOs 2025-06-01T11:58:59,669 creating build/lib/biorefineries/LAOs/units 2025-06-01T11:58:59,670 copying biorefineries/LAOs/units/surge_tank.py -> build/lib/biorefineries/LAOs/units 2025-06-01T11:58:59,673 copying biorefineries/LAOs/units/__init__.py -> build/lib/biorefineries/LAOs/units 2025-06-01T11:58:59,675 copying biorefineries/LAOs/units/nitrogen_generation_package.py -> build/lib/biorefineries/LAOs/units 2025-06-01T11:58:59,678 copying biorefineries/LAOs/units/adiabatic_fixedbed_gas_reactor.py -> build/lib/biorefineries/LAOs/units 2025-06-01T11:58:59,680 creating build/lib/biorefineries/abm 2025-06-01T11:58:59,681 copying biorefineries/abm/abm_yield_example.py -> build/lib/biorefineries/abm 2025-06-01T11:58:59,684 copying biorefineries/abm/cornstover.py -> build/lib/biorefineries/abm 2025-06-01T11:58:59,687 copying biorefineries/abm/corn.py -> build/lib/biorefineries/abm 2025-06-01T11:58:59,690 copying biorefineries/abm/breakdown.py -> build/lib/biorefineries/abm 2025-06-01T11:58:59,693 creating build/lib/biorefineries/gas_fermentation 2025-06-01T11:58:59,695 copying biorefineries/gas_fermentation/tests.py -> build/lib/biorefineries/gas_fermentation 2025-06-01T11:58:59,698 copying biorefineries/gas_fermentation/biorefinery.py -> build/lib/biorefineries/gas_fermentation 2025-06-01T11:58:59,702 copying biorefineries/gas_fermentation/property_package.py -> build/lib/biorefineries/gas_fermentation 2025-06-01T11:58:59,705 copying biorefineries/gas_fermentation/README.md -> build/lib/biorefineries/gas_fermentation 2025-06-01T11:58:59,708 copying biorefineries/gas_fermentation/__init__.py -> build/lib/biorefineries/gas_fermentation 2025-06-01T11:58:59,711 copying biorefineries/gas_fermentation/units.py -> build/lib/biorefineries/gas_fermentation 2025-06-01T11:58:59,714 copying biorefineries/gas_fermentation/tables.py -> build/lib/biorefineries/gas_fermentation 2025-06-01T11:58:59,717 copying biorefineries/gas_fermentation/data.py -> build/lib/biorefineries/gas_fermentation 2025-06-01T11:58:59,719 copying biorefineries/gas_fermentation/systems.py -> build/lib/biorefineries/gas_fermentation 2025-06-01T11:58:59,723 copying biorefineries/gas_fermentation/plots.py -> build/lib/biorefineries/gas_fermentation 2025-06-01T11:58:59,727 copying biorefineries/gas_fermentation/back_of_the_envelope_calculations.py -> build/lib/biorefineries/gas_fermentation 2025-06-01T11:58:59,730 copying biorefineries/gas_fermentation/process_settings.py -> build/lib/biorefineries/gas_fermentation 2025-06-01T11:58:59,733 copying biorefineries/gas_fermentation/uncertainty.py -> build/lib/biorefineries/gas_fermentation 2025-06-01T11:58:59,737 creating build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:58:59,739 copying biorefineries/gas_fermentation/images/dewatering_comparison_no_cc_kde.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:58:59,751 copying biorefineries/gas_fermentation/images/impact_of_length_to_diameter.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:58:59,764 copying biorefineries/gas_fermentation/images/spearman.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:58:59,774 copying biorefineries/gas_fermentation/images/spearman.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:58:59,779 copying biorefineries/gas_fermentation/images/spearman_all_scenarios_LCA.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:58:59,788 copying biorefineries/gas_fermentation/images/oleochemical_yield_contours.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:58:59,793 copying biorefineries/gas_fermentation/images/oleochemical_yield_price_contours.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:58:59,809 copying biorefineries/gas_fermentation/images/spearman_all_scenarios_LCA.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:58:59,814 copying biorefineries/gas_fermentation/images/carbon_capture_comparison_dewatering_kde.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:58:59,823 copying biorefineries/gas_fermentation/images/uncertainty.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:58:59,827 copying biorefineries/gas_fermentation/images/all fermentation-glucose growth_kde.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:58:59,834 copying biorefineries/gas_fermentation/images/montecarlo_absolute.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:58:59,839 copying biorefineries/gas_fermentation/images/monte_carlo_across_H2_price.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:58:59,842 copying biorefineries/gas_fermentation/images/MSP_CI_kde.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:58:59,855 copying biorefineries/gas_fermentation/images/preliminary_flowsheet_with_auxiliaries.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:58:59,859 copying biorefineries/gas_fermentation/images/AcEster_contours.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:58:59,863 copying biorefineries/gas_fermentation/images/carbon_capture_comparison_dewatering_kde.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:58:59,872 copying biorefineries/gas_fermentation/images/sensitivity.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:58:59,876 copying biorefineries/gas_fermentation/images/oleochemical_yield_titer_substrate_contours.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:58:59,882 copying biorefineries/gas_fermentation/images/monte_carlo_across_bioreactor_yield.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:58:59,886 copying biorefineries/gas_fermentation/images/configuration_kde.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:58:59,898 copying biorefineries/gas_fermentation/images/impact.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:58:59,903 copying biorefineries/gas_fermentation/images/spearman_all fermentation-acetate growth.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:58:59,912 copying biorefineries/gas_fermentation/images/MSP_CI_kde.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:58:59,978 copying biorefineries/gas_fermentation/images/H2_contours.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:58:59,982 copying biorefineries/gas_fermentation/images/monte_carlo_across_bioreactor_yield.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:58:59,991 copying biorefineries/gas_fermentation/images/AcOH_titer_AcEster_yield_contours.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:58:59,997 copying biorefineries/gas_fermentation/images/dewatering_comparison_no_cc_kde.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:59:00,007 copying biorefineries/gas_fermentation/images/glucose_config.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:59:00,021 copying biorefineries/gas_fermentation/images/oleochemical_yield_price_contours.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:59:00,026 copying biorefineries/gas_fermentation/images/dewatering_comparison_cc_kde.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:59:00,035 copying biorefineries/gas_fermentation/images/dewatering_comparison_cc_kde.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:59:00,047 copying biorefineries/gas_fermentation/images/AcOH_contours.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:59:00,052 copying biorefineries/gas_fermentation/images/monte_carlo_across_H2_price.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:59:00,058 copying biorefineries/gas_fermentation/images/all fermentation-glucose growth_kde.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:59:00,062 copying biorefineries/gas_fermentation/images/kde.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:59:00,072 copying biorefineries/gas_fermentation/images/oleochemical_yield_contours.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:59:00,094 copying biorefineries/gas_fermentation/images/preliminary_contour.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:59:00,098 copying biorefineries/gas_fermentation/images/kde.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:59:00,108 copying biorefineries/gas_fermentation/images/spearman_all_scenarios_TEA.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:59:00,113 copying biorefineries/gas_fermentation/images/preliminary_flowsheet.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:59:00,116 copying biorefineries/gas_fermentation/images/carbon_capture_comparison_no_dewatering_kde.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:59:00,128 copying biorefineries/gas_fermentation/images/montecarlo_absolute.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:59:00,136 copying biorefineries/gas_fermentation/images/spearman_all fermentation-acetate growth.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:59:00,140 copying biorefineries/gas_fermentation/images/configuration_kde.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:59:00,152 copying biorefineries/gas_fermentation/images/AcOH_titer_AcEster_yield_contours.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:59:00,165 copying biorefineries/gas_fermentation/images/sensitivity.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:59:00,170 copying biorefineries/gas_fermentation/images/impact_of_length_to_diameter.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:59:00,175 copying biorefineries/gas_fermentation/images/spearman_all_scenarios_TEA.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:59:00,185 copying biorefineries/gas_fermentation/images/carbon_capture_comparison_no_dewatering_kde.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:59:00,196 copying biorefineries/gas_fermentation/images/impact.svg -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:59:00,201 copying biorefineries/gas_fermentation/images/oleochemical_yield_titer_substrate_contours.png -> build/lib/biorefineries/gas_fermentation/images 2025-06-01T11:59:00,215 creating build/lib/biorefineries/gas_fermentation/notebooks 2025-06-01T11:59:00,216 copying biorefineries/gas_fermentation/notebooks/arpa_e_project.py -> build/lib/biorefineries/gas_fermentation/notebooks 2025-06-01T11:59:00,220 creating build/lib/biorefineries/tests 2025-06-01T11:59:00,221 copying biorefineries/tests/test_biorefineries.py -> build/lib/biorefineries/tests 2025-06-01T11:59:00,225 copying biorefineries/tests/run_readmes.py -> build/lib/biorefineries/tests 2025-06-01T11:59:00,228 copying biorefineries/tests/__init__.py -> build/lib/biorefineries/tests 2025-06-01T11:59:00,263 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-06-01T11:59:00,263 !! 2025-06-01T11:59:00,264 ******************************************************************************** 2025-06-01T11:59:00,265 Please avoid running ``setup.py`` directly. 2025-06-01T11:59:00,265 Instead, use pypa/build, pypa/installer or other 2025-06-01T11:59:00,266 standards-based tools. 2025-06-01T11:59:00,267 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-06-01T11:59:00,267 or your builds will no longer be supported. 2025-06-01T11:59:00,268 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-06-01T11:59:00,269 ******************************************************************************** 2025-06-01T11:59:00,270 !! 2025-06-01T11:59:00,270 self.initialize_options() 2025-06-01T11:59:00,297 installing to build/bdist.linux-armv7l/wheel 2025-06-01T11:59:00,297 running install 2025-06-01T11:59:00,323 running install_lib 2025-06-01T11:59:00,351 creating build/bdist.linux-armv7l/wheel 2025-06-01T11:59:00,354 creating build/bdist.linux-armv7l/wheel/biorefineries 2025-06-01T11:59:00,356 creating build/bdist.linux-armv7l/wheel/biorefineries/tea 2025-06-01T11:59:00,357 copying build/lib/biorefineries/tea/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/tea 2025-06-01T11:59:00,360 copying build/lib/biorefineries/tea/cellulosic_ethanol_tea.py -> build/bdist.linux-armv7l/wheel/./biorefineries/tea 2025-06-01T11:59:00,362 copying build/lib/biorefineries/tea/conventional_ethanol_tea.py -> build/bdist.linux-armv7l/wheel/./biorefineries/tea 2025-06-01T11:59:00,366 creating build/bdist.linux-armv7l/wheel/biorefineries/abm 2025-06-01T11:59:00,367 copying build/lib/biorefineries/abm/abm_yield_example.py -> build/bdist.linux-armv7l/wheel/./biorefineries/abm 2025-06-01T11:59:00,370 copying build/lib/biorefineries/abm/cornstover.py -> build/bdist.linux-armv7l/wheel/./biorefineries/abm 2025-06-01T11:59:00,372 copying build/lib/biorefineries/abm/corn.py -> build/bdist.linux-armv7l/wheel/./biorefineries/abm 2025-06-01T11:59:00,375 copying build/lib/biorefineries/abm/breakdown.py -> build/bdist.linux-armv7l/wheel/./biorefineries/abm 2025-06-01T11:59:00,378 creating build/bdist.linux-armv7l/wheel/biorefineries/corn 2025-06-01T11:59:00,380 copying build/lib/biorefineries/corn/utils.py -> build/bdist.linux-armv7l/wheel/./biorefineries/corn 2025-06-01T11:59:00,382 copying build/lib/biorefineries/corn/biorefinery.py -> build/bdist.linux-armv7l/wheel/./biorefineries/corn 2025-06-01T11:59:00,385 copying build/lib/biorefineries/corn/README.md -> build/bdist.linux-armv7l/wheel/./biorefineries/corn 2025-06-01T11:59:00,387 copying build/lib/biorefineries/corn/chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/corn 2025-06-01T11:59:00,390 copying build/lib/biorefineries/corn/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/corn 2025-06-01T11:59:00,392 copying build/lib/biorefineries/corn/units.py -> build/bdist.linux-armv7l/wheel/./biorefineries/corn 2025-06-01T11:59:00,395 copying build/lib/biorefineries/corn/systems.py -> build/bdist.linux-armv7l/wheel/./biorefineries/corn 2025-06-01T11:59:00,398 copying build/lib/biorefineries/corn/tea.py -> build/bdist.linux-armv7l/wheel/./biorefineries/corn 2025-06-01T11:59:00,400 copying build/lib/biorefineries/corn/process_settings.py -> build/bdist.linux-armv7l/wheel/./biorefineries/corn 2025-06-01T11:59:00,404 creating build/bdist.linux-armv7l/wheel/biorefineries/biodiesel 2025-06-01T11:59:00,406 copying build/lib/biorefineries/biodiesel/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/biodiesel 2025-06-01T11:59:00,408 copying build/lib/biorefineries/biodiesel/systems.py -> build/bdist.linux-armv7l/wheel/./biorefineries/biodiesel 2025-06-01T11:59:00,411 copying build/lib/biorefineries/biodiesel/streams.py -> build/bdist.linux-armv7l/wheel/./biorefineries/biodiesel 2025-06-01T11:59:00,414 creating build/bdist.linux-armv7l/wheel/biorefineries/biodiesel/units 2025-06-01T11:59:00,416 copying build/lib/biorefineries/biodiesel/units/skimming_tank.py -> build/bdist.linux-armv7l/wheel/./biorefineries/biodiesel/units 2025-06-01T11:59:00,418 copying build/lib/biorefineries/biodiesel/units/transesterification.py -> build/bdist.linux-armv7l/wheel/./biorefineries/biodiesel/units 2025-06-01T11:59:00,421 copying build/lib/biorefineries/biodiesel/units/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/biodiesel/units 2025-06-01T11:59:00,423 copying build/lib/biorefineries/biodiesel/units/glycerolysis_reactor.py -> build/bdist.linux-armv7l/wheel/./biorefineries/biodiesel/units 2025-06-01T11:59:00,426 creating build/bdist.linux-armv7l/wheel/biorefineries/ethanol 2025-06-01T11:59:00,428 copying build/lib/biorefineries/ethanol/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/ethanol 2025-06-01T11:59:00,430 copying build/lib/biorefineries/ethanol/systems.py -> build/bdist.linux-armv7l/wheel/./biorefineries/ethanol 2025-06-01T11:59:00,433 copying build/lib/biorefineries/ethanol/streams.py -> build/bdist.linux-armv7l/wheel/./biorefineries/ethanol 2025-06-01T11:59:00,436 creating build/bdist.linux-armv7l/wheel/biorefineries/lactic 2025-06-01T11:59:00,438 copying build/lib/biorefineries/lactic/utils.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic 2025-06-01T11:59:00,441 copying build/lib/biorefineries/lactic/_profile.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic 2025-06-01T11:59:00,443 copying build/lib/biorefineries/lactic/_tea.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic 2025-06-01T11:59:00,446 copying build/lib/biorefineries/lactic/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic 2025-06-01T11:59:00,448 copying build/lib/biorefineries/lactic/_chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic 2025-06-01T11:59:00,451 copying build/lib/biorefineries/lactic/_process_settings.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic 2025-06-01T11:59:00,454 copying build/lib/biorefineries/lactic/_units.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic 2025-06-01T11:59:00,458 copying build/lib/biorefineries/lactic/models.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic 2025-06-01T11:59:00,461 copying build/lib/biorefineries/lactic/systems.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic 2025-06-01T11:59:00,464 copying build/lib/biorefineries/lactic/README.rst -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic 2025-06-01T11:59:00,468 creating build/bdist.linux-armv7l/wheel/biorefineries/lactic/analyses 2025-06-01T11:59:00,469 copying build/lib/biorefineries/lactic/analyses/1_uncertainties.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic/analyses 2025-06-01T11:59:00,472 copying build/lib/biorefineries/lactic/analyses/3_feedstock_carb-price.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic/analyses 2025-06-01T11:59:00,474 copying build/lib/biorefineries/lactic/analyses/2_fermentation_TRY.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic/analyses 2025-06-01T11:59:00,477 copying build/lib/biorefineries/lactic/_processes.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lactic 2025-06-01T11:59:00,481 creating build/bdist.linux-armv7l/wheel/biorefineries/LAOs 2025-06-01T11:59:00,483 copying build/lib/biorefineries/LAOs/utils.py -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs 2025-06-01T11:59:00,485 copying build/lib/biorefineries/LAOs/_system.py -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs 2025-06-01T11:59:00,488 copying build/lib/biorefineries/LAOs/streams.yaml -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs 2025-06-01T11:59:00,490 copying build/lib/biorefineries/LAOs/chemicals.yaml -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs 2025-06-01T11:59:00,493 copying build/lib/biorefineries/LAOs/_tea.py -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs 2025-06-01T11:59:00,495 copying build/lib/biorefineries/LAOs/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs 2025-06-01T11:59:00,497 copying build/lib/biorefineries/LAOs/_chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs 2025-06-01T11:59:00,500 copying build/lib/biorefineries/LAOs/_process_specifications.py -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs 2025-06-01T11:59:00,502 copying build/lib/biorefineries/LAOs/README.rst -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs 2025-06-01T11:59:00,505 copying build/lib/biorefineries/LAOs/analysis.ipynb -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs 2025-06-01T11:59:00,566 creating build/bdist.linux-armv7l/wheel/biorefineries/LAOs/units 2025-06-01T11:59:00,567 copying build/lib/biorefineries/LAOs/units/surge_tank.py -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs/units 2025-06-01T11:59:00,569 copying build/lib/biorefineries/LAOs/units/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs/units 2025-06-01T11:59:00,571 copying build/lib/biorefineries/LAOs/units/nitrogen_generation_package.py -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs/units 2025-06-01T11:59:00,573 copying build/lib/biorefineries/LAOs/units/adiabatic_fixedbed_gas_reactor.py -> build/bdist.linux-armv7l/wheel/./biorefineries/LAOs/units 2025-06-01T11:59:00,575 creating build/bdist.linux-armv7l/wheel/biorefineries/sugarcane 2025-06-01T11:59:00,576 copying build/lib/biorefineries/sugarcane/_tea.py -> build/bdist.linux-armv7l/wheel/./biorefineries/sugarcane 2025-06-01T11:59:00,578 copying build/lib/biorefineries/sugarcane/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/sugarcane 2025-06-01T11:59:00,581 copying build/lib/biorefineries/sugarcane/_chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/sugarcane 2025-06-01T11:59:00,582 copying build/lib/biorefineries/sugarcane/_process_settings.py -> build/bdist.linux-armv7l/wheel/./biorefineries/sugarcane 2025-06-01T11:59:00,585 copying build/lib/biorefineries/sugarcane/systems.py -> build/bdist.linux-armv7l/wheel/./biorefineries/sugarcane 2025-06-01T11:59:00,586 copying build/lib/biorefineries/sugarcane/model.py -> build/bdist.linux-armv7l/wheel/./biorefineries/sugarcane 2025-06-01T11:59:00,588 copying build/lib/biorefineries/sugarcane/README.rst -> build/bdist.linux-armv7l/wheel/./biorefineries/sugarcane 2025-06-01T11:59:00,590 copying build/lib/biorefineries/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries 2025-06-01T11:59:00,593 creating build/bdist.linux-armv7l/wheel/biorefineries/cornstover 2025-06-01T11:59:00,594 copying build/lib/biorefineries/cornstover/_plot_single_point.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-01T11:59:00,597 copying build/lib/biorefineries/cornstover/webapp_model.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-01T11:59:00,600 copying build/lib/biorefineries/cornstover/_tea.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-01T11:59:00,602 copying build/lib/biorefineries/cornstover/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-01T11:59:00,604 copying build/lib/biorefineries/cornstover/_chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-01T11:59:00,605 copying build/lib/biorefineries/cornstover/_process_settings.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-01T11:59:00,607 copying build/lib/biorefineries/cornstover/units.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-01T11:59:00,609 copying build/lib/biorefineries/cornstover/_switchgrass.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-01T11:59:00,611 copying build/lib/biorefineries/cornstover/systems.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-01T11:59:00,613 copying build/lib/biorefineries/cornstover/model.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-01T11:59:00,614 copying build/lib/biorefineries/cornstover/README.rst -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-01T11:59:00,617 copying build/lib/biorefineries/cornstover/_legacy_code.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-01T11:59:00,619 copying build/lib/biorefineries/cornstover/_sankey.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-01T11:59:00,621 copying build/lib/biorefineries/cornstover/_plot_bars.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-01T11:59:00,623 copying build/lib/biorefineries/cornstover/_analysis.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-01T11:59:00,625 copying build/lib/biorefineries/cornstover/_plot_spearman.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-01T11:59:00,627 copying build/lib/biorefineries/cornstover/_plot_uncertainty.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cornstover 2025-06-01T11:59:00,630 creating build/bdist.linux-armv7l/wheel/biorefineries/cellulosic 2025-06-01T11:59:00,632 creating build/bdist.linux-armv7l/wheel/biorefineries/cellulosic/systems 2025-06-01T11:59:00,634 copying build/lib/biorefineries/cellulosic/systems/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems 2025-06-01T11:59:00,636 creating build/bdist.linux-armv7l/wheel/biorefineries/cellulosic/systems/pretreatment 2025-06-01T11:59:00,638 copying build/lib/biorefineries/cellulosic/systems/pretreatment/hot_water.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems/pretreatment 2025-06-01T11:59:00,640 copying build/lib/biorefineries/cellulosic/systems/pretreatment/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems/pretreatment 2025-06-01T11:59:00,642 copying build/lib/biorefineries/cellulosic/systems/pretreatment/alkaline.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems/pretreatment 2025-06-01T11:59:00,644 copying build/lib/biorefineries/cellulosic/systems/pretreatment/dilute_acid.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems/pretreatment 2025-06-01T11:59:00,647 copying build/lib/biorefineries/cellulosic/systems/pretreatment/ammonia_fiber_expansion.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems/pretreatment 2025-06-01T11:59:00,649 copying build/lib/biorefineries/cellulosic/systems/cellulosic_ethanol.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems 2025-06-01T11:59:00,652 creating build/bdist.linux-armv7l/wheel/biorefineries/cellulosic/systems/fermentation 2025-06-01T11:59:00,653 copying build/lib/biorefineries/cellulosic/systems/fermentation/integrated_bioprocess.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems/fermentation 2025-06-01T11:59:00,656 copying build/lib/biorefineries/cellulosic/systems/fermentation/cofermentation.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems/fermentation 2025-06-01T11:59:00,658 copying build/lib/biorefineries/cellulosic/systems/fermentation/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems/fermentation 2025-06-01T11:59:00,660 copying build/lib/biorefineries/cellulosic/systems/fermentation/saccharification.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems/fermentation 2025-06-01T11:59:00,662 copying build/lib/biorefineries/cellulosic/systems/fermentation/simultaneous_saccharification_cofermentation.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems/fermentation 2025-06-01T11:59:00,664 copying build/lib/biorefineries/cellulosic/systems/fermentation/general_interface.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic/systems/fermentation 2025-06-01T11:59:00,667 copying build/lib/biorefineries/cellulosic/biorefinery.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic 2025-06-01T11:59:00,670 copying build/lib/biorefineries/cellulosic/chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic 2025-06-01T11:59:00,672 copying build/lib/biorefineries/cellulosic/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic 2025-06-01T11:59:00,674 copying build/lib/biorefineries/cellulosic/units.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic 2025-06-01T11:59:00,677 copying build/lib/biorefineries/cellulosic/process_settings.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic 2025-06-01T11:59:00,680 copying build/lib/biorefineries/cellulosic/streams.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cellulosic 2025-06-01T11:59:00,682 creating build/bdist.linux-armv7l/wheel/biorefineries/oilcane 2025-06-01T11:59:00,683 copying build/lib/biorefineries/oilcane/_line_plots.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-01T11:59:00,686 copying build/lib/biorefineries/oilcane/utils.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-01T11:59:00,689 copying build/lib/biorefineries/oilcane/_parse_configuration.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-01T11:59:00,691 copying build/lib/biorefineries/oilcane/sankey_energy.ipynb -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-01T11:59:00,765 copying build/lib/biorefineries/oilcane/lca_benchmarks.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-01T11:59:00,767 copying build/lib/biorefineries/oilcane/webapp_model.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-01T11:59:00,768 copying build/lib/biorefineries/oilcane/README.md -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-01T11:59:00,771 copying build/lib/biorefineries/oilcane/_evaluation.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-01T11:59:00,773 copying build/lib/biorefineries/oilcane/_tea.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-01T11:59:00,775 copying build/lib/biorefineries/oilcane/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-01T11:59:00,777 copying build/lib/biorefineries/oilcane/_tables.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-01T11:59:00,780 copying build/lib/biorefineries/oilcane/_chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-01T11:59:00,781 copying build/lib/biorefineries/oilcane/units.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-01T11:59:00,783 copying build/lib/biorefineries/oilcane/systems.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-01T11:59:00,785 copying build/lib/biorefineries/oilcane/_load_data.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-01T11:59:00,788 copying build/lib/biorefineries/oilcane/_contour_plots.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-01T11:59:00,791 copying build/lib/biorefineries/oilcane/_feature_mockups.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-01T11:59:00,793 copying build/lib/biorefineries/oilcane/sankey_plot.ipynb -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-01T11:59:00,797 copying build/lib/biorefineries/oilcane/_uncertainty_plots.py -> build/bdist.linux-armv7l/wheel/./biorefineries/oilcane 2025-06-01T11:59:00,802 creating build/bdist.linux-armv7l/wheel/biorefineries/cane 2025-06-01T11:59:00,803 copying build/lib/biorefineries/cane/oil_extraction.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-01T11:59:00,806 creating build/bdist.linux-armv7l/wheel/biorefineries/cane/systems 2025-06-01T11:59:00,807 copying build/lib/biorefineries/cane/systems/sugar.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-06-01T11:59:00,810 copying build/lib/biorefineries/cane/systems/lipid_extraction.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-06-01T11:59:00,813 creating build/bdist.linux-armv7l/wheel/biorefineries/cane/systems/sugarcane 2025-06-01T11:59:00,814 copying build/lib/biorefineries/cane/systems/sugarcane/ethanol.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems/sugarcane 2025-06-01T11:59:00,817 copying build/lib/biorefineries/cane/systems/sugarcane/sugar_ethanol.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems/sugarcane 2025-06-01T11:59:00,820 copying build/lib/biorefineries/cane/systems/sugarcane/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems/sugarcane 2025-06-01T11:59:00,822 copying build/lib/biorefineries/cane/systems/sugarcane/cellulosic_ethanol.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems/sugarcane 2025-06-01T11:59:00,824 copying build/lib/biorefineries/cane/systems/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-06-01T11:59:00,826 copying build/lib/biorefineries/cane/systems/biodiesel.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-06-01T11:59:00,829 creating build/bdist.linux-armv7l/wheel/biorefineries/cane/systems/oilcane 2025-06-01T11:59:00,830 copying build/lib/biorefineries/cane/systems/oilcane/biodiesel_ethanol.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems/oilcane 2025-06-01T11:59:00,833 copying build/lib/biorefineries/cane/systems/oilcane/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems/oilcane 2025-06-01T11:59:00,835 copying build/lib/biorefineries/cane/systems/oilcane/cellulosic_crude_oil_ethanol.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems/oilcane 2025-06-01T11:59:00,837 copying build/lib/biorefineries/cane/systems/oilcane/crude_oil_ethanol.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems/oilcane 2025-06-01T11:59:00,840 copying build/lib/biorefineries/cane/systems/oilcane/cellulosic_biodiesel_ethanol.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems/oilcane 2025-06-01T11:59:00,842 copying build/lib/biorefineries/cane/systems/juicing.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-06-01T11:59:00,845 copying build/lib/biorefineries/cane/systems/bagasse.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-06-01T11:59:00,847 copying build/lib/biorefineries/cane/systems/lipidcane.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-06-01T11:59:00,850 copying build/lib/biorefineries/cane/systems/cellulosic_biodiesel.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-06-01T11:59:00,853 copying build/lib/biorefineries/cane/systems/biodiesel_actag.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-06-01T11:59:00,856 copying build/lib/biorefineries/cane/systems/pretreatment.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-06-01T11:59:00,858 copying build/lib/biorefineries/cane/systems/fermentation.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-06-01T11:59:00,861 copying build/lib/biorefineries/cane/systems/cellulosic_biodiesel_actag.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/systems 2025-06-01T11:59:00,864 copying build/lib/biorefineries/cane/biorefinery.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-01T11:59:00,869 copying build/lib/biorefineries/cane/feature_mockups.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-01T11:59:00,872 copying build/lib/biorefineries/cane/configurations_biomass_yield_analysis.npy -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-01T11:59:00,876 copying build/lib/biorefineries/cane/README.md -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-01T11:59:00,879 copying build/lib/biorefineries/cane/rename_soon.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-01T11:59:00,881 copying build/lib/biorefineries/cane/chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-01T11:59:00,883 copying build/lib/biorefineries/cane/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-01T11:59:00,885 copying build/lib/biorefineries/cane/composition.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-01T11:59:00,888 copying build/lib/biorefineries/cane/parse_configuration.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-01T11:59:00,890 copying build/lib/biorefineries/cane/units.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-01T11:59:00,893 copying build/lib/biorefineries/cane/uncertainty_plots.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-01T11:59:00,898 copying build/lib/biorefineries/cane/contour_plots.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-01T11:59:00,901 copying build/lib/biorefineries/cane/tables.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-01T11:59:00,904 creating build/bdist.linux-armv7l/wheel/biorefineries/cane/data 2025-06-01T11:59:00,905 copying build/lib/biorefineries/cane/data/RIN_prices_2022.csv -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/data 2025-06-01T11:59:00,913 copying build/lib/biorefineries/cane/data/cane_composition_data_full.xlsx -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/data 2025-06-01T11:59:00,916 copying build/lib/biorefineries/cane/data/RIN_prices_2023.csv -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/data 2025-06-01T11:59:00,922 copying build/lib/biorefineries/cane/data/cane_composition_data.xlsx -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/data 2025-06-01T11:59:00,925 copying build/lib/biorefineries/cane/data/lca_characterization_factors.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/data 2025-06-01T11:59:00,928 copying build/lib/biorefineries/cane/data/microbial_oil_baseline.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/data 2025-06-01T11:59:00,930 copying build/lib/biorefineries/cane/data/price_distributions_2022.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/data 2025-06-01T11:59:00,933 copying build/lib/biorefineries/cane/data/price_distributions_2023.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane/data 2025-06-01T11:59:00,936 copying build/lib/biorefineries/cane/results.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-01T11:59:00,939 copying build/lib/biorefineries/cane/evaluation.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-01T11:59:00,942 copying build/lib/biorefineries/cane/process_settings.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-01T11:59:00,945 copying build/lib/biorefineries/cane/streams.py -> build/bdist.linux-armv7l/wheel/./biorefineries/cane 2025-06-01T11:59:00,948 creating build/bdist.linux-armv7l/wheel/biorefineries/fattyalcohols 2025-06-01T11:59:00,950 copying build/lib/biorefineries/fattyalcohols/utils.py -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols 2025-06-01T11:59:00,952 copying build/lib/biorefineries/fattyalcohols/_system.py -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols 2025-06-01T11:59:00,954 copying build/lib/biorefineries/fattyalcohols/streams.yaml -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols 2025-06-01T11:59:00,957 copying build/lib/biorefineries/fattyalcohols/chemicals.yaml -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols 2025-06-01T11:59:00,959 copying build/lib/biorefineries/fattyalcohols/_tea.py -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols 2025-06-01T11:59:00,962 copying build/lib/biorefineries/fattyalcohols/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols 2025-06-01T11:59:00,964 copying build/lib/biorefineries/fattyalcohols/_chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols 2025-06-01T11:59:00,966 copying build/lib/biorefineries/fattyalcohols/_process_specifications.py -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols 2025-06-01T11:59:00,969 copying build/lib/biorefineries/fattyalcohols/README.rst -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols 2025-06-01T11:59:00,972 copying build/lib/biorefineries/fattyalcohols/_fattyalcohol_production.py -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols 2025-06-01T11:59:00,975 creating build/bdist.linux-armv7l/wheel/biorefineries/fattyalcohols/units 2025-06-01T11:59:00,977 copying build/lib/biorefineries/fattyalcohols/units/slle_centrifuge.py -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols/units 2025-06-01T11:59:00,980 copying build/lib/biorefineries/fattyalcohols/units/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols/units 2025-06-01T11:59:00,983 copying build/lib/biorefineries/fattyalcohols/units/fatty_alcohol_bioreactor.py -> build/bdist.linux-armv7l/wheel/./biorefineries/fattyalcohols/units 2025-06-01T11:59:00,986 creating build/bdist.linux-armv7l/wheel/biorefineries/milk 2025-06-01T11:59:00,988 copying build/lib/biorefineries/milk/tests.py -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-06-01T11:59:00,990 copying build/lib/biorefineries/milk/biorefinery.py -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-06-01T11:59:00,993 copying build/lib/biorefineries/milk/README.md -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-06-01T11:59:00,996 copying build/lib/biorefineries/milk/chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-06-01T11:59:00,998 copying build/lib/biorefineries/milk/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-06-01T11:59:01,000 copying build/lib/biorefineries/milk/units.py -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-06-01T11:59:01,002 copying build/lib/biorefineries/milk/data.py -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-06-01T11:59:01,004 copying build/lib/biorefineries/milk/systems.py -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-06-01T11:59:01,008 copying build/lib/biorefineries/milk/plots.py -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-06-01T11:59:01,011 creating build/bdist.linux-armv7l/wheel/biorefineries/milk/results 2025-06-01T11:59:01,012 copying build/lib/biorefineries/milk/results/MSP_GWP_titer_productivity_AcEster_UFPermeate_GlucoseMedia.npy -> build/bdist.linux-armv7l/wheel/./biorefineries/milk/results 2025-06-01T11:59:01,016 copying build/lib/biorefineries/milk/results/MSP_GWP_titer_productivity_AcEster_UFPermeate.npy -> build/bdist.linux-armv7l/wheel/./biorefineries/milk/results 2025-06-01T11:59:01,018 copying build/lib/biorefineries/milk/results/MSP_GWP_titer_productivity_AcEster_GlucoseMedia.npy -> build/bdist.linux-armv7l/wheel/./biorefineries/milk/results 2025-06-01T11:59:01,021 copying build/lib/biorefineries/milk/process_settings.py -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-06-01T11:59:01,024 creating build/bdist.linux-armv7l/wheel/biorefineries/milk/images 2025-06-01T11:59:01,026 copying build/lib/biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate_GlucoseMedia.png -> build/bdist.linux-armv7l/wheel/./biorefineries/milk/images 2025-06-01T11:59:01,037 copying build/lib/biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/milk/images 2025-06-01T11:59:01,041 copying build/lib/biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate.png -> build/bdist.linux-armv7l/wheel/./biorefineries/milk/images 2025-06-01T11:59:01,049 copying build/lib/biorefineries/milk/images/MSP_across_yield_productivity_GlucoseMedia.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/milk/images 2025-06-01T11:59:01,053 copying build/lib/biorefineries/milk/images/MSP_across_yield_productivity_GlucoseMedia.png -> build/bdist.linux-armv7l/wheel/./biorefineries/milk/images 2025-06-01T11:59:01,062 copying build/lib/biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate_GlucoseMedia.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/milk/images 2025-06-01T11:59:01,067 copying build/lib/biorefineries/milk/GalactoOligoSaccharideProcess.xlsx -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-06-01T11:59:01,103 copying build/lib/biorefineries/milk/uncertainty.py -> build/bdist.linux-armv7l/wheel/./biorefineries/milk 2025-06-01T11:59:01,107 creating build/bdist.linux-armv7l/wheel/biorefineries/lipidcane 2025-06-01T11:59:01,108 copying build/lib/biorefineries/lipidcane/_system.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-06-01T11:59:01,110 copying build/lib/biorefineries/lipidcane/_tea.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-06-01T11:59:01,112 copying build/lib/biorefineries/lipidcane/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-06-01T11:59:01,114 copying build/lib/biorefineries/lipidcane/_webapp_model.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-06-01T11:59:01,117 copying build/lib/biorefineries/lipidcane/_chemicals.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-06-01T11:59:01,118 copying build/lib/biorefineries/lipidcane/_process_settings.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-06-01T11:59:01,120 copying build/lib/biorefineries/lipidcane/model.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-06-01T11:59:01,123 copying build/lib/biorefineries/lipidcane/README.rst -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-06-01T11:59:01,125 copying build/lib/biorefineries/lipidcane/_feedstock_analysis.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-06-01T11:59:01,127 copying build/lib/biorefineries/lipidcane/sankey_plot.ipynb -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-06-01T11:59:01,183 copying build/lib/biorefineries/lipidcane/_analysis.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-06-01T11:59:01,186 copying build/lib/biorefineries/lipidcane/_plot_spearman.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-06-01T11:59:01,188 copying build/lib/biorefineries/lipidcane/_plot_uncertainty.py -> build/bdist.linux-armv7l/wheel/./biorefineries/lipidcane 2025-06-01T11:59:01,191 creating build/bdist.linux-armv7l/wheel/biorefineries/gas_fermentation 2025-06-01T11:59:01,192 copying build/lib/biorefineries/gas_fermentation/tests.py -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation 2025-06-01T11:59:01,194 copying build/lib/biorefineries/gas_fermentation/biorefinery.py -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation 2025-06-01T11:59:01,197 copying build/lib/biorefineries/gas_fermentation/property_package.py -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation 2025-06-01T11:59:01,199 copying build/lib/biorefineries/gas_fermentation/README.md -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation 2025-06-01T11:59:01,202 copying build/lib/biorefineries/gas_fermentation/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation 2025-06-01T11:59:01,204 copying build/lib/biorefineries/gas_fermentation/units.py -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation 2025-06-01T11:59:01,206 copying build/lib/biorefineries/gas_fermentation/tables.py -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation 2025-06-01T11:59:01,209 copying build/lib/biorefineries/gas_fermentation/data.py -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation 2025-06-01T11:59:01,210 copying build/lib/biorefineries/gas_fermentation/systems.py -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation 2025-06-01T11:59:01,214 creating build/bdist.linux-armv7l/wheel/biorefineries/gas_fermentation/notebooks 2025-06-01T11:59:01,215 copying build/lib/biorefineries/gas_fermentation/notebooks/arpa_e_project.py -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/notebooks 2025-06-01T11:59:01,218 copying build/lib/biorefineries/gas_fermentation/plots.py -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation 2025-06-01T11:59:01,221 copying build/lib/biorefineries/gas_fermentation/back_of_the_envelope_calculations.py -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation 2025-06-01T11:59:01,223 copying build/lib/biorefineries/gas_fermentation/process_settings.py -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation 2025-06-01T11:59:01,227 creating build/bdist.linux-armv7l/wheel/biorefineries/gas_fermentation/images 2025-06-01T11:59:01,228 copying build/lib/biorefineries/gas_fermentation/images/dewatering_comparison_no_cc_kde.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,245 copying build/lib/biorefineries/gas_fermentation/images/impact_of_length_to_diameter.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,259 copying build/lib/biorefineries/gas_fermentation/images/spearman.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,267 copying build/lib/biorefineries/gas_fermentation/images/spearman.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,271 copying build/lib/biorefineries/gas_fermentation/images/spearman_all_scenarios_LCA.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,277 copying build/lib/biorefineries/gas_fermentation/images/oleochemical_yield_contours.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,281 copying build/lib/biorefineries/gas_fermentation/images/oleochemical_yield_price_contours.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,299 copying build/lib/biorefineries/gas_fermentation/images/spearman_all_scenarios_LCA.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,303 copying build/lib/biorefineries/gas_fermentation/images/carbon_capture_comparison_dewatering_kde.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,312 copying build/lib/biorefineries/gas_fermentation/images/uncertainty.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,316 copying build/lib/biorefineries/gas_fermentation/images/all fermentation-glucose growth_kde.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,323 copying build/lib/biorefineries/gas_fermentation/images/montecarlo_absolute.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,328 copying build/lib/biorefineries/gas_fermentation/images/monte_carlo_across_H2_price.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,331 copying build/lib/biorefineries/gas_fermentation/images/MSP_CI_kde.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,343 copying build/lib/biorefineries/gas_fermentation/images/preliminary_flowsheet_with_auxiliaries.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,347 copying build/lib/biorefineries/gas_fermentation/images/AcEster_contours.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,351 copying build/lib/biorefineries/gas_fermentation/images/carbon_capture_comparison_dewatering_kde.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,361 copying build/lib/biorefineries/gas_fermentation/images/sensitivity.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,365 copying build/lib/biorefineries/gas_fermentation/images/oleochemical_yield_titer_substrate_contours.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,373 copying build/lib/biorefineries/gas_fermentation/images/monte_carlo_across_bioreactor_yield.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,377 copying build/lib/biorefineries/gas_fermentation/images/configuration_kde.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,387 copying build/lib/biorefineries/gas_fermentation/images/impact.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,391 copying build/lib/biorefineries/gas_fermentation/images/spearman_all fermentation-acetate growth.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,401 copying build/lib/biorefineries/gas_fermentation/images/MSP_CI_kde.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,471 copying build/lib/biorefineries/gas_fermentation/images/H2_contours.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,475 copying build/lib/biorefineries/gas_fermentation/images/monte_carlo_across_bioreactor_yield.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,483 copying build/lib/biorefineries/gas_fermentation/images/AcOH_titer_AcEster_yield_contours.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,487 copying build/lib/biorefineries/gas_fermentation/images/dewatering_comparison_no_cc_kde.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,496 copying build/lib/biorefineries/gas_fermentation/images/glucose_config.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,507 copying build/lib/biorefineries/gas_fermentation/images/oleochemical_yield_price_contours.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,511 copying build/lib/biorefineries/gas_fermentation/images/dewatering_comparison_cc_kde.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,520 copying build/lib/biorefineries/gas_fermentation/images/dewatering_comparison_cc_kde.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,539 copying build/lib/biorefineries/gas_fermentation/images/AcOH_contours.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,543 copying build/lib/biorefineries/gas_fermentation/images/monte_carlo_across_H2_price.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,548 copying build/lib/biorefineries/gas_fermentation/images/all fermentation-glucose growth_kde.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,552 copying build/lib/biorefineries/gas_fermentation/images/kde.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,571 copying build/lib/biorefineries/gas_fermentation/images/oleochemical_yield_contours.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,600 copying build/lib/biorefineries/gas_fermentation/images/preliminary_contour.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,603 copying build/lib/biorefineries/gas_fermentation/images/kde.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,614 copying build/lib/biorefineries/gas_fermentation/images/spearman_all_scenarios_TEA.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,618 copying build/lib/biorefineries/gas_fermentation/images/preliminary_flowsheet.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,621 copying build/lib/biorefineries/gas_fermentation/images/carbon_capture_comparison_no_dewatering_kde.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,635 copying build/lib/biorefineries/gas_fermentation/images/montecarlo_absolute.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,643 copying build/lib/biorefineries/gas_fermentation/images/spearman_all fermentation-acetate growth.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,647 copying build/lib/biorefineries/gas_fermentation/images/configuration_kde.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,660 copying build/lib/biorefineries/gas_fermentation/images/AcOH_titer_AcEster_yield_contours.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,672 copying build/lib/biorefineries/gas_fermentation/images/sensitivity.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,676 copying build/lib/biorefineries/gas_fermentation/images/impact_of_length_to_diameter.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,681 copying build/lib/biorefineries/gas_fermentation/images/spearman_all_scenarios_TEA.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,690 copying build/lib/biorefineries/gas_fermentation/images/carbon_capture_comparison_no_dewatering_kde.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,699 copying build/lib/biorefineries/gas_fermentation/images/impact.svg -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,703 copying build/lib/biorefineries/gas_fermentation/images/oleochemical_yield_titer_substrate_contours.png -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation/images 2025-06-01T11:59:01,718 copying build/lib/biorefineries/gas_fermentation/uncertainty.py -> build/bdist.linux-armv7l/wheel/./biorefineries/gas_fermentation 2025-06-01T11:59:01,722 creating build/bdist.linux-armv7l/wheel/biorefineries/tests 2025-06-01T11:59:01,724 copying build/lib/biorefineries/tests/test_biorefineries.py -> build/bdist.linux-armv7l/wheel/./biorefineries/tests 2025-06-01T11:59:01,727 copying build/lib/biorefineries/tests/run_readmes.py -> build/bdist.linux-armv7l/wheel/./biorefineries/tests 2025-06-01T11:59:01,729 copying build/lib/biorefineries/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./biorefineries/tests 2025-06-01T11:59:01,731 running install_egg_info 2025-06-01T11:59:01,770 running egg_info 2025-06-01T11:59:01,797 writing biorefineries.egg-info/PKG-INFO 2025-06-01T11:59:01,800 writing dependency_links to biorefineries.egg-info/dependency_links.txt 2025-06-01T11:59:01,802 writing requirements to biorefineries.egg-info/requires.txt 2025-06-01T11:59:01,803 writing top-level names to biorefineries.egg-info/top_level.txt 2025-06-01T11:59:01,870 reading manifest file 'biorefineries.egg-info/SOURCES.txt' 2025-06-01T11:59:01,905 adding license file 'LICENSE.txt' 2025-06-01T11:59:01,922 writing manifest file 'biorefineries.egg-info/SOURCES.txt' 2025-06-01T11:59:01,924 Copying biorefineries.egg-info to build/bdist.linux-armv7l/wheel/./biorefineries-2.34.10-py3.11.egg-info 2025-06-01T11:59:01,934 running install_scripts 2025-06-01T11:59:01,946 creating build/bdist.linux-armv7l/wheel/biorefineries-2.34.10.dist-info/WHEEL 2025-06-01T11:59:01,949 creating '/tmp/pip-wheel-l5us99iq/biorefineries-2.34.10-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-06-01T11:59:01,951 adding 'biorefineries/__init__.py' 2025-06-01T11:59:01,954 adding 'biorefineries/LAOs/README.rst' 2025-06-01T11:59:01,956 adding 'biorefineries/LAOs/__init__.py' 2025-06-01T11:59:01,957 adding 'biorefineries/LAOs/_chemicals.py' 2025-06-01T11:59:01,959 adding 'biorefineries/LAOs/_process_specifications.py' 2025-06-01T11:59:01,962 adding 'biorefineries/LAOs/_system.py' 2025-06-01T11:59:01,963 adding 'biorefineries/LAOs/_tea.py' 2025-06-01T11:59:02,394 adding 'biorefineries/LAOs/analysis.ipynb' 2025-06-01T11:59:02,417 adding 'biorefineries/LAOs/chemicals.yaml' 2025-06-01T11:59:02,418 adding 'biorefineries/LAOs/streams.yaml' 2025-06-01T11:59:02,419 adding 'biorefineries/LAOs/utils.py' 2025-06-01T11:59:02,421 adding 'biorefineries/LAOs/units/__init__.py' 2025-06-01T11:59:02,422 adding 'biorefineries/LAOs/units/adiabatic_fixedbed_gas_reactor.py' 2025-06-01T11:59:02,423 adding 'biorefineries/LAOs/units/nitrogen_generation_package.py' 2025-06-01T11:59:02,425 adding 'biorefineries/LAOs/units/surge_tank.py' 2025-06-01T11:59:02,426 adding 'biorefineries/abm/abm_yield_example.py' 2025-06-01T11:59:02,428 adding 'biorefineries/abm/breakdown.py' 2025-06-01T11:59:02,429 adding 'biorefineries/abm/corn.py' 2025-06-01T11:59:02,431 adding 'biorefineries/abm/cornstover.py' 2025-06-01T11:59:02,432 adding 'biorefineries/biodiesel/__init__.py' 2025-06-01T11:59:02,434 adding 'biorefineries/biodiesel/streams.py' 2025-06-01T11:59:02,436 adding 'biorefineries/biodiesel/systems.py' 2025-06-01T11:59:02,438 adding 'biorefineries/biodiesel/units/__init__.py' 2025-06-01T11:59:02,439 adding 'biorefineries/biodiesel/units/glycerolysis_reactor.py' 2025-06-01T11:59:02,441 adding 'biorefineries/biodiesel/units/skimming_tank.py' 2025-06-01T11:59:02,442 adding 'biorefineries/biodiesel/units/transesterification.py' 2025-06-01T11:59:02,445 adding 'biorefineries/cane/README.md' 2025-06-01T11:59:02,447 adding 'biorefineries/cane/__init__.py' 2025-06-01T11:59:02,456 adding 'biorefineries/cane/biorefinery.py' 2025-06-01T11:59:02,458 adding 'biorefineries/cane/chemicals.py' 2025-06-01T11:59:02,461 adding 'biorefineries/cane/composition.py' 2025-06-01T11:59:02,466 adding 'biorefineries/cane/configurations_biomass_yield_analysis.npy' 2025-06-01T11:59:02,471 adding 'biorefineries/cane/contour_plots.py' 2025-06-01T11:59:02,474 adding 'biorefineries/cane/evaluation.py' 2025-06-01T11:59:02,477 adding 'biorefineries/cane/feature_mockups.py' 2025-06-01T11:59:02,478 adding 'biorefineries/cane/oil_extraction.py' 2025-06-01T11:59:02,480 adding 'biorefineries/cane/parse_configuration.py' 2025-06-01T11:59:02,481 adding 'biorefineries/cane/process_settings.py' 2025-06-01T11:59:02,483 adding 'biorefineries/cane/rename_soon.py' 2025-06-01T11:59:02,485 adding 'biorefineries/cane/results.py' 2025-06-01T11:59:02,486 adding 'biorefineries/cane/streams.py' 2025-06-01T11:59:02,488 adding 'biorefineries/cane/tables.py' 2025-06-01T11:59:02,496 adding 'biorefineries/cane/uncertainty_plots.py' 2025-06-01T11:59:02,498 adding 'biorefineries/cane/units.py' 2025-06-01T11:59:02,528 adding 'biorefineries/cane/data/RIN_prices_2022.csv' 2025-06-01T11:59:02,548 adding 'biorefineries/cane/data/RIN_prices_2023.csv' 2025-06-01T11:59:02,551 adding 'biorefineries/cane/data/cane_composition_data.xlsx' 2025-06-01T11:59:02,553 adding 'biorefineries/cane/data/cane_composition_data_full.xlsx' 2025-06-01T11:59:02,555 adding 'biorefineries/cane/data/lca_characterization_factors.py' 2025-06-01T11:59:02,556 adding 'biorefineries/cane/data/microbial_oil_baseline.py' 2025-06-01T11:59:02,558 adding 'biorefineries/cane/data/price_distributions_2022.py' 2025-06-01T11:59:02,560 adding 'biorefineries/cane/data/price_distributions_2023.py' 2025-06-01T11:59:02,562 adding 'biorefineries/cane/systems/__init__.py' 2025-06-01T11:59:02,563 adding 'biorefineries/cane/systems/bagasse.py' 2025-06-01T11:59:02,564 adding 'biorefineries/cane/systems/biodiesel.py' 2025-06-01T11:59:02,566 adding 'biorefineries/cane/systems/biodiesel_actag.py' 2025-06-01T11:59:02,568 adding 'biorefineries/cane/systems/cellulosic_biodiesel.py' 2025-06-01T11:59:02,569 adding 'biorefineries/cane/systems/cellulosic_biodiesel_actag.py' 2025-06-01T11:59:02,572 adding 'biorefineries/cane/systems/fermentation.py' 2025-06-01T11:59:02,574 adding 'biorefineries/cane/systems/juicing.py' 2025-06-01T11:59:02,576 adding 'biorefineries/cane/systems/lipid_extraction.py' 2025-06-01T11:59:02,577 adding 'biorefineries/cane/systems/lipidcane.py' 2025-06-01T11:59:02,579 adding 'biorefineries/cane/systems/pretreatment.py' 2025-06-01T11:59:02,581 adding 'biorefineries/cane/systems/sugar.py' 2025-06-01T11:59:02,582 adding 'biorefineries/cane/systems/oilcane/__init__.py' 2025-06-01T11:59:02,584 adding 'biorefineries/cane/systems/oilcane/biodiesel_ethanol.py' 2025-06-01T11:59:02,586 adding 'biorefineries/cane/systems/oilcane/cellulosic_biodiesel_ethanol.py' 2025-06-01T11:59:02,587 adding 'biorefineries/cane/systems/oilcane/cellulosic_crude_oil_ethanol.py' 2025-06-01T11:59:02,588 adding 'biorefineries/cane/systems/oilcane/crude_oil_ethanol.py' 2025-06-01T11:59:02,590 adding 'biorefineries/cane/systems/sugarcane/__init__.py' 2025-06-01T11:59:02,592 adding 'biorefineries/cane/systems/sugarcane/cellulosic_ethanol.py' 2025-06-01T11:59:02,593 adding 'biorefineries/cane/systems/sugarcane/ethanol.py' 2025-06-01T11:59:02,595 adding 'biorefineries/cane/systems/sugarcane/sugar_ethanol.py' 2025-06-01T11:59:02,597 adding 'biorefineries/cellulosic/__init__.py' 2025-06-01T11:59:02,598 adding 'biorefineries/cellulosic/biorefinery.py' 2025-06-01T11:59:02,600 adding 'biorefineries/cellulosic/chemicals.py' 2025-06-01T11:59:02,602 adding 'biorefineries/cellulosic/process_settings.py' 2025-06-01T11:59:02,603 adding 'biorefineries/cellulosic/streams.py' 2025-06-01T11:59:02,607 adding 'biorefineries/cellulosic/units.py' 2025-06-01T11:59:02,609 adding 'biorefineries/cellulosic/systems/__init__.py' 2025-06-01T11:59:02,610 adding 'biorefineries/cellulosic/systems/cellulosic_ethanol.py' 2025-06-01T11:59:02,612 adding 'biorefineries/cellulosic/systems/fermentation/__init__.py' 2025-06-01T11:59:02,613 adding 'biorefineries/cellulosic/systems/fermentation/cofermentation.py' 2025-06-01T11:59:02,616 adding 'biorefineries/cellulosic/systems/fermentation/general_interface.py' 2025-06-01T11:59:02,618 adding 'biorefineries/cellulosic/systems/fermentation/integrated_bioprocess.py' 2025-06-01T11:59:02,619 adding 'biorefineries/cellulosic/systems/fermentation/saccharification.py' 2025-06-01T11:59:02,621 adding 'biorefineries/cellulosic/systems/fermentation/simultaneous_saccharification_cofermentation.py' 2025-06-01T11:59:02,622 adding 'biorefineries/cellulosic/systems/pretreatment/__init__.py' 2025-06-01T11:59:02,624 adding 'biorefineries/cellulosic/systems/pretreatment/alkaline.py' 2025-06-01T11:59:02,625 adding 'biorefineries/cellulosic/systems/pretreatment/ammonia_fiber_expansion.py' 2025-06-01T11:59:02,627 adding 'biorefineries/cellulosic/systems/pretreatment/dilute_acid.py' 2025-06-01T11:59:02,628 adding 'biorefineries/cellulosic/systems/pretreatment/hot_water.py' 2025-06-01T11:59:02,630 adding 'biorefineries/corn/README.md' 2025-06-01T11:59:02,632 adding 'biorefineries/corn/__init__.py' 2025-06-01T11:59:02,633 adding 'biorefineries/corn/biorefinery.py' 2025-06-01T11:59:02,635 adding 'biorefineries/corn/chemicals.py' 2025-06-01T11:59:02,637 adding 'biorefineries/corn/process_settings.py' 2025-06-01T11:59:02,639 adding 'biorefineries/corn/systems.py' 2025-06-01T11:59:02,641 adding 'biorefineries/corn/tea.py' 2025-06-01T11:59:02,643 adding 'biorefineries/corn/units.py' 2025-06-01T11:59:02,645 adding 'biorefineries/corn/utils.py' 2025-06-01T11:59:02,647 adding 'biorefineries/cornstover/README.rst' 2025-06-01T11:59:02,649 adding 'biorefineries/cornstover/__init__.py' 2025-06-01T11:59:02,650 adding 'biorefineries/cornstover/_analysis.py' 2025-06-01T11:59:02,651 adding 'biorefineries/cornstover/_chemicals.py' 2025-06-01T11:59:02,653 adding 'biorefineries/cornstover/_legacy_code.py' 2025-06-01T11:59:02,654 adding 'biorefineries/cornstover/_plot_bars.py' 2025-06-01T11:59:02,656 adding 'biorefineries/cornstover/_plot_single_point.py' 2025-06-01T11:59:02,657 adding 'biorefineries/cornstover/_plot_spearman.py' 2025-06-01T11:59:02,659 adding 'biorefineries/cornstover/_plot_uncertainty.py' 2025-06-01T11:59:02,660 adding 'biorefineries/cornstover/_process_settings.py' 2025-06-01T11:59:02,662 adding 'biorefineries/cornstover/_sankey.py' 2025-06-01T11:59:02,663 adding 'biorefineries/cornstover/_switchgrass.py' 2025-06-01T11:59:02,664 adding 'biorefineries/cornstover/_tea.py' 2025-06-01T11:59:02,666 adding 'biorefineries/cornstover/model.py' 2025-06-01T11:59:02,667 adding 'biorefineries/cornstover/systems.py' 2025-06-01T11:59:02,668 adding 'biorefineries/cornstover/units.py' 2025-06-01T11:59:02,670 adding 'biorefineries/cornstover/webapp_model.py' 2025-06-01T11:59:02,673 adding 'biorefineries/ethanol/__init__.py' 2025-06-01T11:59:02,675 adding 'biorefineries/ethanol/streams.py' 2025-06-01T11:59:02,676 adding 'biorefineries/ethanol/systems.py' 2025-06-01T11:59:02,678 adding 'biorefineries/fattyalcohols/README.rst' 2025-06-01T11:59:02,679 adding 'biorefineries/fattyalcohols/__init__.py' 2025-06-01T11:59:02,680 adding 'biorefineries/fattyalcohols/_chemicals.py' 2025-06-01T11:59:02,682 adding 'biorefineries/fattyalcohols/_fattyalcohol_production.py' 2025-06-01T11:59:02,683 adding 'biorefineries/fattyalcohols/_process_specifications.py' 2025-06-01T11:59:02,685 adding 'biorefineries/fattyalcohols/_system.py' 2025-06-01T11:59:02,686 adding 'biorefineries/fattyalcohols/_tea.py' 2025-06-01T11:59:02,687 adding 'biorefineries/fattyalcohols/chemicals.yaml' 2025-06-01T11:59:02,688 adding 'biorefineries/fattyalcohols/streams.yaml' 2025-06-01T11:59:02,690 adding 'biorefineries/fattyalcohols/utils.py' 2025-06-01T11:59:02,691 adding 'biorefineries/fattyalcohols/units/__init__.py' 2025-06-01T11:59:02,692 adding 'biorefineries/fattyalcohols/units/fatty_alcohol_bioreactor.py' 2025-06-01T11:59:02,694 adding 'biorefineries/fattyalcohols/units/slle_centrifuge.py' 2025-06-01T11:59:02,696 adding 'biorefineries/gas_fermentation/README.md' 2025-06-01T11:59:02,697 adding 'biorefineries/gas_fermentation/__init__.py' 2025-06-01T11:59:02,698 adding 'biorefineries/gas_fermentation/back_of_the_envelope_calculations.py' 2025-06-01T11:59:02,702 adding 'biorefineries/gas_fermentation/biorefinery.py' 2025-06-01T11:59:02,704 adding 'biorefineries/gas_fermentation/data.py' 2025-06-01T11:59:02,706 adding 'biorefineries/gas_fermentation/plots.py' 2025-06-01T11:59:02,707 adding 'biorefineries/gas_fermentation/process_settings.py' 2025-06-01T11:59:02,709 adding 'biorefineries/gas_fermentation/property_package.py' 2025-06-01T11:59:02,713 adding 'biorefineries/gas_fermentation/systems.py' 2025-06-01T11:59:02,715 adding 'biorefineries/gas_fermentation/tables.py' 2025-06-01T11:59:02,716 adding 'biorefineries/gas_fermentation/tests.py' 2025-06-01T11:59:02,722 adding 'biorefineries/gas_fermentation/uncertainty.py' 2025-06-01T11:59:02,724 adding 'biorefineries/gas_fermentation/units.py' 2025-06-01T11:59:02,733 adding 'biorefineries/gas_fermentation/images/AcEster_contours.svg' 2025-06-01T11:59:02,741 adding 'biorefineries/gas_fermentation/images/AcOH_contours.svg' 2025-06-01T11:59:02,809 adding 'biorefineries/gas_fermentation/images/AcOH_titer_AcEster_yield_contours.png' 2025-06-01T11:59:02,820 adding 'biorefineries/gas_fermentation/images/AcOH_titer_AcEster_yield_contours.svg' 2025-06-01T11:59:02,826 adding 'biorefineries/gas_fermentation/images/H2_contours.svg' 2025-06-01T11:59:02,895 adding 'biorefineries/gas_fermentation/images/MSP_CI_kde.png' 2025-06-01T11:59:03,038 adding 'biorefineries/gas_fermentation/images/MSP_CI_kde.svg' 2025-06-01T11:59:03,089 adding 'biorefineries/gas_fermentation/images/all fermentation-glucose growth_kde.png' 2025-06-01T11:59:03,097 adding 'biorefineries/gas_fermentation/images/all fermentation-glucose growth_kde.svg' 2025-06-01T11:59:03,141 adding 'biorefineries/gas_fermentation/images/carbon_capture_comparison_dewatering_kde.png' 2025-06-01T11:59:03,164 adding 'biorefineries/gas_fermentation/images/carbon_capture_comparison_dewatering_kde.svg' 2025-06-01T11:59:03,212 adding 'biorefineries/gas_fermentation/images/carbon_capture_comparison_no_dewatering_kde.png' 2025-06-01T11:59:03,236 adding 'biorefineries/gas_fermentation/images/carbon_capture_comparison_no_dewatering_kde.svg' 2025-06-01T11:59:03,302 adding 'biorefineries/gas_fermentation/images/configuration_kde.png' 2025-06-01T11:59:03,324 adding 'biorefineries/gas_fermentation/images/configuration_kde.svg' 2025-06-01T11:59:03,379 adding 'biorefineries/gas_fermentation/images/dewatering_comparison_cc_kde.png' 2025-06-01T11:59:03,402 adding 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'biorefineries/gas_fermentation/images/monte_carlo_across_H2_price.png' 2025-06-01T11:59:03,760 adding 'biorefineries/gas_fermentation/images/monte_carlo_across_H2_price.svg' 2025-06-01T11:59:03,801 adding 'biorefineries/gas_fermentation/images/monte_carlo_across_bioreactor_yield.png' 2025-06-01T11:59:03,808 adding 'biorefineries/gas_fermentation/images/monte_carlo_across_bioreactor_yield.svg' 2025-06-01T11:59:03,835 adding 'biorefineries/gas_fermentation/images/montecarlo_absolute.png' 2025-06-01T11:59:03,853 adding 'biorefineries/gas_fermentation/images/montecarlo_absolute.svg' 2025-06-01T11:59:03,968 adding 'biorefineries/gas_fermentation/images/oleochemical_yield_contours.png' 2025-06-01T11:59:03,982 adding 'biorefineries/gas_fermentation/images/oleochemical_yield_contours.svg' 2025-06-01T11:59:04,082 adding 'biorefineries/gas_fermentation/images/oleochemical_yield_price_contours.png' 2025-06-01T11:59:04,095 adding 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'biorefineries/gas_fermentation/images/spearman_all fermentation-acetate growth.png' 2025-06-01T11:59:04,313 adding 'biorefineries/gas_fermentation/images/spearman_all fermentation-acetate growth.svg' 2025-06-01T11:59:04,344 adding 'biorefineries/gas_fermentation/images/spearman_all_scenarios_LCA.png' 2025-06-01T11:59:04,352 adding 'biorefineries/gas_fermentation/images/spearman_all_scenarios_LCA.svg' 2025-06-01T11:59:04,391 adding 'biorefineries/gas_fermentation/images/spearman_all_scenarios_TEA.png' 2025-06-01T11:59:04,401 adding 'biorefineries/gas_fermentation/images/spearman_all_scenarios_TEA.svg' 2025-06-01T11:59:04,405 adding 'biorefineries/gas_fermentation/images/uncertainty.png' 2025-06-01T11:59:04,407 adding 'biorefineries/gas_fermentation/notebooks/arpa_e_project.py' 2025-06-01T11:59:04,409 adding 'biorefineries/lactic/README.rst' 2025-06-01T11:59:04,411 adding 'biorefineries/lactic/__init__.py' 2025-06-01T11:59:04,414 adding 'biorefineries/lactic/_chemicals.py' 2025-06-01T11:59:04,416 adding 'biorefineries/lactic/_process_settings.py' 2025-06-01T11:59:04,421 adding 'biorefineries/lactic/_processes.py' 2025-06-01T11:59:04,422 adding 'biorefineries/lactic/_profile.py' 2025-06-01T11:59:04,423 adding 'biorefineries/lactic/_tea.py' 2025-06-01T11:59:04,431 adding 'biorefineries/lactic/_units.py' 2025-06-01T11:59:04,433 adding 'biorefineries/lactic/models.py' 2025-06-01T11:59:04,435 adding 'biorefineries/lactic/systems.py' 2025-06-01T11:59:04,437 adding 'biorefineries/lactic/utils.py' 2025-06-01T11:59:04,440 adding 'biorefineries/lactic/analyses/1_uncertainties.py' 2025-06-01T11:59:04,442 adding 'biorefineries/lactic/analyses/2_fermentation_TRY.py' 2025-06-01T11:59:04,444 adding 'biorefineries/lactic/analyses/3_feedstock_carb-price.py' 2025-06-01T11:59:04,446 adding 'biorefineries/lipidcane/README.rst' 2025-06-01T11:59:04,447 adding 'biorefineries/lipidcane/__init__.py' 2025-06-01T11:59:04,449 adding 'biorefineries/lipidcane/_analysis.py' 2025-06-01T11:59:04,450 adding 'biorefineries/lipidcane/_chemicals.py' 2025-06-01T11:59:04,451 adding 'biorefineries/lipidcane/_feedstock_analysis.py' 2025-06-01T11:59:04,453 adding 'biorefineries/lipidcane/_plot_spearman.py' 2025-06-01T11:59:04,455 adding 'biorefineries/lipidcane/_plot_uncertainty.py' 2025-06-01T11:59:04,456 adding 'biorefineries/lipidcane/_process_settings.py' 2025-06-01T11:59:04,457 adding 'biorefineries/lipidcane/_system.py' 2025-06-01T11:59:04,458 adding 'biorefineries/lipidcane/_tea.py' 2025-06-01T11:59:04,460 adding 'biorefineries/lipidcane/_webapp_model.py' 2025-06-01T11:59:04,462 adding 'biorefineries/lipidcane/model.py' 2025-06-01T11:59:04,897 adding 'biorefineries/lipidcane/sankey_plot.ipynb' 2025-06-01T11:59:05,096 adding 'biorefineries/milk/GalactoOligoSaccharideProcess.xlsx' 2025-06-01T11:59:05,108 adding 'biorefineries/milk/README.md' 2025-06-01T11:59:05,109 adding 'biorefineries/milk/__init__.py' 2025-06-01T11:59:05,111 adding 'biorefineries/milk/biorefinery.py' 2025-06-01T11:59:05,113 adding 'biorefineries/milk/chemicals.py' 2025-06-01T11:59:05,114 adding 'biorefineries/milk/data.py' 2025-06-01T11:59:05,116 adding 'biorefineries/milk/plots.py' 2025-06-01T11:59:05,117 adding 'biorefineries/milk/process_settings.py' 2025-06-01T11:59:05,118 adding 'biorefineries/milk/systems.py' 2025-06-01T11:59:05,120 adding 'biorefineries/milk/tests.py' 2025-06-01T11:59:05,123 adding 'biorefineries/milk/uncertainty.py' 2025-06-01T11:59:05,124 adding 'biorefineries/milk/units.py' 2025-06-01T11:59:05,174 adding 'biorefineries/milk/images/MSP_across_yield_productivity_GlucoseMedia.png' 2025-06-01T11:59:05,183 adding 'biorefineries/milk/images/MSP_across_yield_productivity_GlucoseMedia.svg' 2025-06-01T11:59:05,229 adding 'biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate.png' 2025-06-01T11:59:05,238 adding 'biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate.svg' 2025-06-01T11:59:05,302 adding 'biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate_GlucoseMedia.png' 2025-06-01T11:59:05,313 adding 'biorefineries/milk/images/MSP_across_yield_productivity_UFPermeate_GlucoseMedia.svg' 2025-06-01T11:59:05,316 adding 'biorefineries/milk/results/MSP_GWP_titer_productivity_AcEster_GlucoseMedia.npy' 2025-06-01T11:59:05,317 adding 'biorefineries/milk/results/MSP_GWP_titer_productivity_AcEster_UFPermeate.npy' 2025-06-01T11:59:05,319 adding 'biorefineries/milk/results/MSP_GWP_titer_productivity_AcEster_UFPermeate_GlucoseMedia.npy' 2025-06-01T11:59:05,322 adding 'biorefineries/oilcane/README.md' 2025-06-01T11:59:05,323 adding 'biorefineries/oilcane/__init__.py' 2025-06-01T11:59:05,324 adding 'biorefineries/oilcane/_chemicals.py' 2025-06-01T11:59:05,326 adding 'biorefineries/oilcane/_contour_plots.py' 2025-06-01T11:59:05,328 adding 'biorefineries/oilcane/_evaluation.py' 2025-06-01T11:59:05,329 adding 'biorefineries/oilcane/_feature_mockups.py' 2025-06-01T11:59:05,331 adding 'biorefineries/oilcane/_line_plots.py' 2025-06-01T11:59:05,333 adding 'biorefineries/oilcane/_load_data.py' 2025-06-01T11:59:05,334 adding 'biorefineries/oilcane/_parse_configuration.py' 2025-06-01T11:59:05,336 adding 'biorefineries/oilcane/_tables.py' 2025-06-01T11:59:05,337 adding 'biorefineries/oilcane/_tea.py' 2025-06-01T11:59:05,343 adding 'biorefineries/oilcane/_uncertainty_plots.py' 2025-06-01T11:59:05,345 adding 'biorefineries/oilcane/lca_benchmarks.py' 2025-06-01T11:59:05,807 adding 'biorefineries/oilcane/sankey_energy.ipynb' 2025-06-01T11:59:05,835 adding 'biorefineries/oilcane/sankey_plot.ipynb' 2025-06-01T11:59:05,837 adding 'biorefineries/oilcane/systems.py' 2025-06-01T11:59:05,838 adding 'biorefineries/oilcane/units.py' 2025-06-01T11:59:05,840 adding 'biorefineries/oilcane/utils.py' 2025-06-01T11:59:05,841 adding 'biorefineries/oilcane/webapp_model.py' 2025-06-01T11:59:05,843 adding 'biorefineries/sugarcane/README.rst' 2025-06-01T11:59:05,845 adding 'biorefineries/sugarcane/__init__.py' 2025-06-01T11:59:05,846 adding 'biorefineries/sugarcane/_chemicals.py' 2025-06-01T11:59:05,847 adding 'biorefineries/sugarcane/_process_settings.py' 2025-06-01T11:59:05,848 adding 'biorefineries/sugarcane/_tea.py' 2025-06-01T11:59:05,849 adding 'biorefineries/sugarcane/model.py' 2025-06-01T11:59:05,850 adding 'biorefineries/sugarcane/systems.py' 2025-06-01T11:59:05,852 adding 'biorefineries/tea/__init__.py' 2025-06-01T11:59:05,854 adding 'biorefineries/tea/cellulosic_ethanol_tea.py' 2025-06-01T11:59:05,856 adding 'biorefineries/tea/conventional_ethanol_tea.py' 2025-06-01T11:59:05,858 adding 'biorefineries/tests/__init__.py' 2025-06-01T11:59:05,859 adding 'biorefineries/tests/run_readmes.py' 2025-06-01T11:59:05,862 adding 'biorefineries/tests/test_biorefineries.py' 2025-06-01T11:59:05,865 adding 'biorefineries-2.34.10.dist-info/licenses/LICENSE.txt' 2025-06-01T11:59:05,866 adding 'biorefineries-2.34.10.dist-info/METADATA' 2025-06-01T11:59:05,867 adding 'biorefineries-2.34.10.dist-info/WHEEL' 2025-06-01T11:59:05,868 adding 'biorefineries-2.34.10.dist-info/top_level.txt' 2025-06-01T11:59:05,873 adding 'biorefineries-2.34.10.dist-info/RECORD' 2025-06-01T11:59:06,033 removing build/bdist.linux-armv7l/wheel 2025-06-01T11:59:06,240 Building wheel for biorefineries (setup.py): finished with status 'done' 2025-06-01T11:59:06,392 Created wheel for biorefineries: filename=biorefineries-2.34.10-py3-none-any.whl size=14827885 sha256=fc6c92dd98358453af96a9ac567d0137ee725a218b229bcdb44b8b348ddb4707 2025-06-01T11:59:06,393 Stored in directory: /tmp/pip-ephem-wheel-cache-f_18_y4u/wheels/f4/12/6e/a6aef68385e8dd4b17685430640e81589f919c94657bd2911a 2025-06-01T11:59:06,418 Successfully built biorefineries 2025-06-01T11:59:06,779 Removed build tracker: '/tmp/pip-build-tracker-a6r61jv0'