2025-06-02T01:48:18,917 Created temporary directory: /tmp/pip-build-tracker-vck_dc_m 2025-06-02T01:48:18,918 Initialized build tracking at /tmp/pip-build-tracker-vck_dc_m 2025-06-02T01:48:18,919 Created build tracker: /tmp/pip-build-tracker-vck_dc_m 2025-06-02T01:48:18,920 Entered build tracker: /tmp/pip-build-tracker-vck_dc_m 2025-06-02T01:48:18,920 Created temporary directory: /tmp/pip-wheel-hzigfzbn 2025-06-02T01:48:18,925 Created temporary directory: /tmp/pip-ephem-wheel-cache-an3vvocw 2025-06-02T01:48:18,977 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-06-02T01:48:18,979 2 location(s) to search for versions of prfect: 2025-06-02T01:48:18,979 * https://pypi.org/simple/prfect/ 2025-06-02T01:48:18,979 * https://www.piwheels.org/simple/prfect/ 2025-06-02T01:48:18,980 Fetching project page and analyzing links: https://pypi.org/simple/prfect/ 2025-06-02T01:48:18,981 Getting page https://pypi.org/simple/prfect/ 2025-06-02T01:48:18,982 Found index url https://pypi.org/simple/ 2025-06-02T01:48:19,209 Fetched page https://pypi.org/simple/prfect/ as application/vnd.pypi.simple.v1+json 2025-06-02T01:48:19,221 Skipping link: No binaries permitted for prfect: https://files.pythonhosted.org/packages/40/8c/c2227f1c672387f561704a78a2dac70cfe1f76add12c0c21d5db5df46974/prfect-0.1-py3-none-any.whl (from https://pypi.org/simple/prfect/) (requires-python:>3.5.2) 2025-06-02T01:48:19,223 Found link https://files.pythonhosted.org/packages/c6/fc/1663ac511286a1ff5567b4bd371d074da182b12f1b8294d8b48e017240c6/prfect-0.1.tar.gz (from https://pypi.org/simple/prfect/) (requires-python:>3.5.2), version: 0.1 2025-06-02T01:48:19,224 Skipping link: No binaries permitted for prfect: https://files.pythonhosted.org/packages/0d/a6/8cd610ff8533f4b83f5dc2015c0e814b8d36d87a19840c56d651c9388251/prfect-0.2-py3-none-any.whl (from https://pypi.org/simple/prfect/) (requires-python:>3.5.2) 2025-06-02T01:48:19,224 Found link https://files.pythonhosted.org/packages/13/64/beb05b7dc3ee275851e564d90d1fc6beed1fb9d0c42ad07389d1f1944aef/prfect-0.2.tar.gz (from https://pypi.org/simple/prfect/) (requires-python:>3.5.2), version: 0.2 2025-06-02T01:48:19,225 Skipping link: No binaries permitted for prfect: https://files.pythonhosted.org/packages/61/e8/39983d46808671b3dacd7f70b96295ea83353bd0b9e6f4cce1d222d9a2a6/prfect-0.3-py3-none-any.whl (from https://pypi.org/simple/prfect/) (requires-python:>3.5.2) 2025-06-02T01:48:19,226 Found link https://files.pythonhosted.org/packages/52/61/1b0e5a10307759c8ccb60fd102cadb70434a91faf30f733b4ce2433744a2/prfect-0.3.tar.gz (from https://pypi.org/simple/prfect/) (requires-python:>3.5.2), version: 0.3 2025-06-02T01:48:19,226 Skipping link: No binaries permitted for prfect: https://files.pythonhosted.org/packages/22/11/642e9720d34415747f3d685daeb44c67dbd0479c20a888e741ef62b50cde/prfect-0.4-py3-none-any.whl (from https://pypi.org/simple/prfect/) (requires-python:>3.5.2) 2025-06-02T01:48:19,227 Found link https://files.pythonhosted.org/packages/73/04/d85e08d5bfd489b49ebb22b764fdaa9a8b389db5c4eb920c925f8ea204bc/prfect-0.4.tar.gz (from https://pypi.org/simple/prfect/) (requires-python:>3.5.2), version: 0.4 2025-06-02T01:48:19,228 Skipping link: No binaries permitted for prfect: https://files.pythonhosted.org/packages/f2/26/342f15e31ee0ad9c16e3f4e9b6c7c194c7e41bfe29ba19e82b135d177fa2/prfect-0.10-py3-none-any.whl (from https://pypi.org/simple/prfect/) (requires-python:>3.5.2) 2025-06-02T01:48:19,229 Found link https://files.pythonhosted.org/packages/d5/2e/7b280021f7ae93f02bed9b5466efeb7ad44cebdcb070eba0f0c12ed50ba3/prfect-0.10.tar.gz (from https://pypi.org/simple/prfect/) (requires-python:>3.5.2), version: 0.10 2025-06-02T01:48:19,229 Skipping link: No binaries permitted for prfect: https://files.pythonhosted.org/packages/96/19/a02d705f6da6da39d93776321a8d41547808b41ffc0397782d513e95daed/prfect-0.11-py3-none-any.whl (from https://pypi.org/simple/prfect/) (requires-python:>3.5.2) 2025-06-02T01:48:19,230 Found link https://files.pythonhosted.org/packages/5a/49/71db64a2bc46e6cb6cae7119fdb929218779a4c13c135693899a9cdd05d8/prfect-0.11.tar.gz (from https://pypi.org/simple/prfect/) (requires-python:>3.5.2), version: 0.11 2025-06-02T01:48:19,231 Skipping link: No binaries permitted for prfect: https://files.pythonhosted.org/packages/83/75/e0ad97c398669d0ca2961fb035162f3617c986aa4c0df50ed093be2f4f1a/prfect-0.12-py3-none-any.whl (from https://pypi.org/simple/prfect/) (requires-python:>3.5.2) 2025-06-02T01:48:19,231 Found link https://files.pythonhosted.org/packages/c9/e2/db3653b8ac3f2671d005a5f690bb391946dcd63eb1e5623f82cf31bc44e4/prfect-0.12.tar.gz (from https://pypi.org/simple/prfect/) (requires-python:>3.5.2), version: 0.12 2025-06-02T01:48:19,232 Skipping link: No binaries permitted for prfect: https://files.pythonhosted.org/packages/93/a1/837474005614abc80782f822fe8796577a3070aa44802ce95cb08dfe31cd/prfect-0.13-py3-none-any.whl (from https://pypi.org/simple/prfect/) (requires-python:>3.5.2) 2025-06-02T01:48:19,233 Found link https://files.pythonhosted.org/packages/56/65/5dc2cd6ac92317fd4e90e93a9800b69658745afdc261fcbe9a68fb6bc010/prfect-0.13.tar.gz (from https://pypi.org/simple/prfect/) (requires-python:>3.5.2), version: 0.13 2025-06-02T01:48:19,233 Skipping link: No binaries permitted for prfect: https://files.pythonhosted.org/packages/7c/44/eb457fdb7111d3e2cf60f271c59b40772a1f0f0ae631e725cef8eebef41f/prfect-0.15-py3-none-any.whl (from https://pypi.org/simple/prfect/) (requires-python:>3.5.2) 2025-06-02T01:48:19,234 Found link https://files.pythonhosted.org/packages/f5/17/9675476a8b6e32516e6ed6b213a5a4a20059c68086d420cf61319a7fb215/prfect-0.15.tar.gz (from https://pypi.org/simple/prfect/) (requires-python:>3.5.2), version: 0.15 2025-06-02T01:48:19,235 Skipping link: No binaries permitted for prfect: https://files.pythonhosted.org/packages/d2/aa/6f5528f8099346a071905554865120d34758064ea457b12484ef7d0929ba/prfect-0.29-py3-none-any.whl (from https://pypi.org/simple/prfect/) (requires-python:>3.5.2) 2025-06-02T01:48:19,235 Found link https://files.pythonhosted.org/packages/4f/e7/06fa1db7d5034a318412e942428ef494def844e30caf6dbb6480b559f3f5/prfect-0.29.tar.gz (from https://pypi.org/simple/prfect/) (requires-python:>3.5.2), version: 0.29 2025-06-02T01:48:19,236 Skipping link: No binaries permitted for prfect: https://files.pythonhosted.org/packages/3b/6a/32819d52283642d2ac3f2777ad6ee7954a3d5110fb8b94550ba95a8715f3/prfect-0.30-py3-none-any.whl (from https://pypi.org/simple/prfect/) (requires-python:>3.5.2) 2025-06-02T01:48:19,236 Found link https://files.pythonhosted.org/packages/66/7c/b071f41d89c396f48db16393a1520309a4012225c4289d7e5aa9101d2e19/prfect-0.30.tar.gz (from https://pypi.org/simple/prfect/) (requires-python:>3.5.2), version: 0.30 2025-06-02T01:48:19,237 Skipping link: No binaries permitted for prfect: https://files.pythonhosted.org/packages/e8/32/137a05074cad03f0b11733d71797c174d565e81f14e4469c98731f304086/prfect-0.31-py3-none-any.whl (from https://pypi.org/simple/prfect/) (requires-python:>3.5.2) 2025-06-02T01:48:19,238 Found link https://files.pythonhosted.org/packages/80/99/56ce8fb551760d3d4e6d9b2b36e0d121f10bc3999d5cb74fc03cdd8ce32c/prfect-0.31.tar.gz (from https://pypi.org/simple/prfect/) (requires-python:>3.5.2), version: 0.31 2025-06-02T01:48:19,239 Skipping link: No binaries permitted for prfect: https://files.pythonhosted.org/packages/4d/7c/f82cd1578fff3358fdefb034ce1b6cfc26f71ea46c6f4eb4191c2443adcd/prfect-0.33-py3-none-any.whl (from https://pypi.org/simple/prfect/) (requires-python:>3.5.2) 2025-06-02T01:48:19,240 Found link https://files.pythonhosted.org/packages/79/4e/a0323c8fc558bcb53467c8183eec55a534984d72bcb97fced728c2434257/prfect-0.33.tar.gz (from https://pypi.org/simple/prfect/) (requires-python:>3.5.2), version: 0.33 2025-06-02T01:48:19,240 Skipping link: No binaries permitted for prfect: https://files.pythonhosted.org/packages/68/47/cdb06addf9b15a2c42cd0dca703b0d4726069024f711e53d5f656dfd300e/prfect-0.34-py3-none-any.whl (from https://pypi.org/simple/prfect/) (requires-python:>3.5.2) 2025-06-02T01:48:19,241 Found link https://files.pythonhosted.org/packages/de/fb/fd8919ea2d9ecda7d3530b72adae6a5a4c548cc297b2610fabfd71687e9c/prfect-0.34.tar.gz (from https://pypi.org/simple/prfect/) (requires-python:>3.5.2), version: 0.34 2025-06-02T01:48:19,242 Skipping link: No binaries permitted for prfect: https://files.pythonhosted.org/packages/fb/36/ea14d748618654d593b1cb6aca4e6df6cdd2fab081d1d9c075b888e98930/prfect-0.35-py3-none-any.whl (from https://pypi.org/simple/prfect/) (requires-python:>3.5.2) 2025-06-02T01:48:19,243 Found link https://files.pythonhosted.org/packages/35/5f/a1feb8894818ec6ced27bff959715bf7bd9d064f9efaafa1085bcccb1f94/prfect-0.35.tar.gz (from https://pypi.org/simple/prfect/) (requires-python:>3.5.2), version: 0.35 2025-06-02T01:48:19,243 Skipping link: No binaries permitted for prfect: https://files.pythonhosted.org/packages/fe/b4/c6aa642a9c944a6bf1efe940a3ebd3d6888e658bcead38bcda1dfa3c4fc4/prfect-0.36-py3-none-any.whl (from https://pypi.org/simple/prfect/) (requires-python:>3.5.2) 2025-06-02T01:48:19,244 Found link https://files.pythonhosted.org/packages/3f/ec/a92f818bfa26a507d58ae9933fe4fb369963a16d1d1da2a5560f0fb15bc4/prfect-0.36.tar.gz (from https://pypi.org/simple/prfect/) (requires-python:>3.5.2), version: 0.36 2025-06-02T01:48:19,244 Skipping link: No binaries permitted for prfect: https://files.pythonhosted.org/packages/25/40/8ef3fd366138c2a6f0b245bece3fa41c013ac8c30a4c38aee23908d080f4/prfect-0.37-py3-none-any.whl (from https://pypi.org/simple/prfect/) (requires-python:>3.5.2) 2025-06-02T01:48:19,245 Found link https://files.pythonhosted.org/packages/3c/ef/8a1cbee7d28b64bf1533a7bcb8ff1063f3ba1251af995a7e2cbe362e7860/prfect-0.37.tar.gz (from https://pypi.org/simple/prfect/) (requires-python:>3.5.2), version: 0.37 2025-06-02T01:48:19,245 Skipping link: No binaries permitted for prfect: https://files.pythonhosted.org/packages/3f/a8/f1677d4d307245d72c7204015bb9380a7c51d7f97483f856f7bba739f689/prfect-0.38-py3-none-any.whl (from https://pypi.org/simple/prfect/) (requires-python:>3.5.2) 2025-06-02T01:48:19,246 Found link https://files.pythonhosted.org/packages/ed/8a/09b0698de34798da5d4b8633e71fcf9d5e46005d54c468011b7519fe275d/prfect-0.38.tar.gz (from https://pypi.org/simple/prfect/) (requires-python:>3.5.2), version: 0.38 2025-06-02T01:48:19,247 Skipping link: No binaries permitted for prfect: https://files.pythonhosted.org/packages/b2/1d/067d4b28afdcb5ef13ef62272654bdd04801c9bb712bf0f84f50e0e9fbf2/prfect-0.41-py3-none-any.whl (from https://pypi.org/simple/prfect/) (requires-python:>3.5.2) 2025-06-02T01:48:19,247 Found link https://files.pythonhosted.org/packages/a3/eb/066c16f97906eb440f422e9b5feedcda7a8ffe8e8a17ed6968b844a113aa/prfect-0.41.tar.gz (from https://pypi.org/simple/prfect/) (requires-python:>3.5.2), version: 0.41 2025-06-02T01:48:19,248 Skipping link: No binaries permitted for prfect: https://files.pythonhosted.org/packages/f6/c5/703bafc386abac59c7a0aecd62b231ad779aab41d65b29100e4112eb2590/prfect-0.42-py3-none-any.whl (from https://pypi.org/simple/prfect/) (requires-python:>3.5.2) 2025-06-02T01:48:19,249 Found link https://files.pythonhosted.org/packages/80/e3/19b8023db4a43aee884770bdbf5e790490cb757e3aeb34bc4f0d62dddfab/prfect-0.42.tar.gz (from https://pypi.org/simple/prfect/) (requires-python:>3.5.2), version: 0.42 2025-06-02T01:48:19,249 Fetching project page and analyzing links: https://www.piwheels.org/simple/prfect/ 2025-06-02T01:48:19,250 Getting page https://www.piwheels.org/simple/prfect/ 2025-06-02T01:48:19,252 Found index url https://www.piwheels.org/simple/ 2025-06-02T01:48:19,432 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/prfect/ 2025-06-02T01:48:20,087 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/prfect/ 2025-06-02T01:48:21,252 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/prfect/ 2025-06-02T01:48:23,418 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/prfect/ 2025-06-02T01:48:27,582 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/prfect/ 2025-06-02T01:48:27,753 Could not fetch URL https://www.piwheels.org/simple/prfect/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/prfect/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping 2025-06-02T01:48:27,754 Skipping link: not a file: https://www.piwheels.org/simple/prfect/ 2025-06-02T01:48:27,755 Skipping link: not a file: https://pypi.org/simple/prfect/ 2025-06-02T01:48:27,781 Given no hashes to check 1 links for project 'prfect': discarding no candidates 2025-06-02T01:48:27,782 Collecting prfect==0.42 2025-06-02T01:48:27,785 Created temporary directory: /tmp/pip-unpack-zvk6n4j5 2025-06-02T01:48:29,609 Downloading prfect-0.42.tar.gz (1.0 MB) 2025-06-02T01:48:29,984 Added prfect==0.42 from https://files.pythonhosted.org/packages/80/e3/19b8023db4a43aee884770bdbf5e790490cb757e3aeb34bc4f0d62dddfab/prfect-0.42.tar.gz to build tracker '/tmp/pip-build-tracker-vck_dc_m' 2025-06-02T01:48:29,986 Running setup.py (path:/tmp/pip-wheel-hzigfzbn/prfect_caa67107cbbc454399a1233b8e2368df/setup.py) egg_info for package prfect 2025-06-02T01:48:29,987 Created temporary directory: /tmp/pip-pip-egg-info-ielb138u 2025-06-02T01:48:29,988 Preparing metadata (setup.py): started 2025-06-02T01:48:29,990 Running command python setup.py egg_info 2025-06-02T01:48:30,866 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-06-02T01:48:30,866 !! 2025-06-02T01:48:30,867 ******************************************************************************** 2025-06-02T01:48:30,868 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-06-02T01:48:30,869 License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+) 2025-06-02T01:48:30,870 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-02T01:48:30,871 ******************************************************************************** 2025-06-02T01:48:30,872 !! 2025-06-02T01:48:30,872 self._finalize_license_expression() 2025-06-02T01:48:30,896 running egg_info 2025-06-02T01:48:30,925 creating /tmp/pip-pip-egg-info-ielb138u/prfect.egg-info 2025-06-02T01:48:30,926 writing /tmp/pip-pip-egg-info-ielb138u/prfect.egg-info/PKG-INFO 2025-06-02T01:48:30,929 writing dependency_links to /tmp/pip-pip-egg-info-ielb138u/prfect.egg-info/dependency_links.txt 2025-06-02T01:48:30,932 writing requirements to /tmp/pip-pip-egg-info-ielb138u/prfect.egg-info/requires.txt 2025-06-02T01:48:30,933 writing top-level names to /tmp/pip-pip-egg-info-ielb138u/prfect.egg-info/top_level.txt 2025-06-02T01:48:30,934 writing manifest file '/tmp/pip-pip-egg-info-ielb138u/prfect.egg-info/SOURCES.txt' 2025-06-02T01:48:31,054 reading manifest file '/tmp/pip-pip-egg-info-ielb138u/prfect.egg-info/SOURCES.txt' 2025-06-02T01:48:31,056 reading manifest template 'MANIFEST.in' 2025-06-02T01:48:31,059 warning: no files found matching '*.c' under directory 'src' 2025-06-02T01:48:31,060 adding license file 'LICENSE' 2025-06-02T01:48:31,063 writing manifest file '/tmp/pip-pip-egg-info-ielb138u/prfect.egg-info/SOURCES.txt' 2025-06-02T01:48:31,168 Preparing metadata (setup.py): finished with status 'done' 2025-06-02T01:48:31,172 Source in /tmp/pip-wheel-hzigfzbn/prfect_caa67107cbbc454399a1233b8e2368df has version 0.42, which satisfies requirement prfect==0.42 from https://files.pythonhosted.org/packages/80/e3/19b8023db4a43aee884770bdbf5e790490cb757e3aeb34bc4f0d62dddfab/prfect-0.42.tar.gz 2025-06-02T01:48:31,173 Removed prfect==0.42 from https://files.pythonhosted.org/packages/80/e3/19b8023db4a43aee884770bdbf5e790490cb757e3aeb34bc4f0d62dddfab/prfect-0.42.tar.gz from build tracker '/tmp/pip-build-tracker-vck_dc_m' 2025-06-02T01:48:31,180 Created temporary directory: /tmp/pip-unpack-ksemnufe 2025-06-02T01:48:31,181 Created temporary directory: /tmp/pip-unpack-e7edr5ox 2025-06-02T01:48:31,182 Building wheels for collected packages: prfect 2025-06-02T01:48:31,185 Created temporary directory: /tmp/pip-wheel-2intlb7p 2025-06-02T01:48:31,186 DEPRECATION: Building 'prfect' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'prfect'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-06-02T01:48:31,187 Building wheel for prfect (setup.py): started 2025-06-02T01:48:31,189 Destination directory: /tmp/pip-wheel-2intlb7p 2025-06-02T01:48:31,189 Running command python setup.py bdist_wheel 2025-06-02T01:48:32,031 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-06-02T01:48:32,031 !! 2025-06-02T01:48:32,032 ******************************************************************************** 2025-06-02T01:48:32,032 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-06-02T01:48:32,034 License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+) 2025-06-02T01:48:32,035 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-02T01:48:32,036 ******************************************************************************** 2025-06-02T01:48:32,037 !! 2025-06-02T01:48:32,038 self._finalize_license_expression() 2025-06-02T01:48:32,038 running bdist_wheel 2025-06-02T01:48:32,173 running build 2025-06-02T01:48:32,173 running build_py 2025-06-02T01:48:32,205 creating build/lib/prfect 2025-06-02T01:48:32,208 copying prfect/__init__.py -> build/lib/prfect 2025-06-02T01:48:32,210 copying prfect/prodigal.py -> build/lib/prfect 2025-06-02T01:48:32,212 copying prfect/functions.py -> build/lib/prfect 2025-06-02T01:48:32,215 copying prfect/codons.py -> build/lib/prfect 2025-06-02T01:48:32,217 copying prfect/locus.py -> build/lib/prfect 2025-06-02T01:48:32,219 copying prfect/stats.py -> build/lib/prfect 2025-06-02T01:48:32,222 copying prfect/feature.py -> build/lib/prfect 2025-06-02T01:48:32,224 copying prfect/file.py -> build/lib/prfect 2025-06-02T01:48:32,229 copying prfect/clf.0.24.2.pkl -> build/lib/prfect 2025-06-02T01:48:32,284 copying prfect/clf.1.1.1.pkl -> build/lib/prfect 2025-06-02T01:48:32,305 running build_scripts 2025-06-02T01:48:32,306 creating build/scripts-3.11 2025-06-02T01:48:32,307 copying and adjusting prfect.py -> build/scripts-3.11 2025-06-02T01:48:32,309 changing mode of build/scripts-3.11/prfect.py from 644 to 755 2025-06-02T01:48:32,341 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-06-02T01:48:32,342 !! 2025-06-02T01:48:32,343 ******************************************************************************** 2025-06-02T01:48:32,343 Please avoid running ``setup.py`` directly. 2025-06-02T01:48:32,344 Instead, use pypa/build, pypa/installer or other 2025-06-02T01:48:32,344 standards-based tools. 2025-06-02T01:48:32,345 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-06-02T01:48:32,346 or your builds will no longer be supported. 2025-06-02T01:48:32,347 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-06-02T01:48:32,347 ******************************************************************************** 2025-06-02T01:48:32,348 !! 2025-06-02T01:48:32,348 self.initialize_options() 2025-06-02T01:48:32,370 installing to build/bdist.linux-armv7l/wheel 2025-06-02T01:48:32,370 running install 2025-06-02T01:48:32,395 running install_lib 2025-06-02T01:48:32,422 creating build/bdist.linux-armv7l/wheel 2025-06-02T01:48:32,424 creating build/bdist.linux-armv7l/wheel/prfect 2025-06-02T01:48:32,425 copying build/lib/prfect/__init__.py -> build/bdist.linux-armv7l/wheel/./prfect 2025-06-02T01:48:32,427 copying build/lib/prfect/prodigal.py -> build/bdist.linux-armv7l/wheel/./prfect 2025-06-02T01:48:32,429 copying build/lib/prfect/functions.py -> build/bdist.linux-armv7l/wheel/./prfect 2025-06-02T01:48:32,432 copying build/lib/prfect/codons.py -> build/bdist.linux-armv7l/wheel/./prfect 2025-06-02T01:48:32,434 copying build/lib/prfect/clf.0.24.2.pkl -> build/bdist.linux-armv7l/wheel/./prfect 2025-06-02T01:48:32,455 copying build/lib/prfect/locus.py -> build/bdist.linux-armv7l/wheel/./prfect 2025-06-02T01:48:32,458 copying build/lib/prfect/stats.py -> build/bdist.linux-armv7l/wheel/./prfect 2025-06-02T01:48:32,460 copying build/lib/prfect/feature.py -> build/bdist.linux-armv7l/wheel/./prfect 2025-06-02T01:48:32,462 copying build/lib/prfect/clf.1.1.1.pkl -> build/bdist.linux-armv7l/wheel/./prfect 2025-06-02T01:48:32,485 copying build/lib/prfect/file.py -> build/bdist.linux-armv7l/wheel/./prfect 2025-06-02T01:48:32,487 running install_egg_info 2025-06-02T01:48:32,526 running egg_info 2025-06-02T01:48:32,554 writing prfect.egg-info/PKG-INFO 2025-06-02T01:48:32,558 writing dependency_links to prfect.egg-info/dependency_links.txt 2025-06-02T01:48:32,560 writing requirements to prfect.egg-info/requires.txt 2025-06-02T01:48:32,561 writing top-level names to prfect.egg-info/top_level.txt 2025-06-02T01:48:32,595 reading manifest file 'prfect.egg-info/SOURCES.txt' 2025-06-02T01:48:32,598 reading manifest template 'MANIFEST.in' 2025-06-02T01:48:32,601 warning: no files found matching '*.c' under directory 'src' 2025-06-02T01:48:32,602 adding license file 'LICENSE' 2025-06-02T01:48:32,605 writing manifest file 'prfect.egg-info/SOURCES.txt' 2025-06-02T01:48:32,606 Copying prfect.egg-info to build/bdist.linux-armv7l/wheel/./prfect-0.42-py3.11.egg-info 2025-06-02T01:48:32,617 running install_scripts 2025-06-02T01:48:32,618 creating build/bdist.linux-armv7l/wheel/prfect-0.42.data/scripts 2025-06-02T01:48:32,620 copying build/scripts-3.11/prfect.py -> build/bdist.linux-armv7l/wheel/prfect-0.42.data/scripts 2025-06-02T01:48:32,622 changing mode of build/bdist.linux-armv7l/wheel/prfect-0.42.data/scripts/prfect.py to 755 2025-06-02T01:48:32,637 creating build/bdist.linux-armv7l/wheel/prfect-0.42.dist-info/WHEEL 2025-06-02T01:48:32,640 creating '/tmp/pip-wheel-2intlb7p/prfect-0.42-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-06-02T01:48:32,642 adding 'prfect/__init__.py' 2025-06-02T01:48:32,816 adding 'prfect/clf.0.24.2.pkl' 2025-06-02T01:48:32,980 adding 'prfect/clf.1.1.1.pkl' 2025-06-02T01:48:32,988 adding 'prfect/codons.py' 2025-06-02T01:48:32,990 adding 'prfect/feature.py' 2025-06-02T01:48:32,991 adding 'prfect/file.py' 2025-06-02T01:48:32,992 adding 'prfect/functions.py' 2025-06-02T01:48:32,994 adding 'prfect/locus.py' 2025-06-02T01:48:32,995 adding 'prfect/prodigal.py' 2025-06-02T01:48:32,997 adding 'prfect/stats.py' 2025-06-02T01:48:32,999 adding 'prfect-0.42.data/scripts/prfect.py' 2025-06-02T01:48:33,006 adding 'prfect-0.42.dist-info/licenses/LICENSE' 2025-06-02T01:48:33,008 adding 'prfect-0.42.dist-info/METADATA' 2025-06-02T01:48:33,009 adding 'prfect-0.42.dist-info/WHEEL' 2025-06-02T01:48:33,010 adding 'prfect-0.42.dist-info/top_level.txt' 2025-06-02T01:48:33,011 adding 'prfect-0.42.dist-info/RECORD' 2025-06-02T01:48:33,022 removing build/bdist.linux-armv7l/wheel 2025-06-02T01:48:33,138 Building wheel for prfect (setup.py): finished with status 'done' 2025-06-02T01:48:33,167 Created wheel for prfect: filename=prfect-0.42-py3-none-any.whl size=911009 sha256=e411a13b743d506c04d65560d7b8165f1addafc443e4915d25acac1499958779 2025-06-02T01:48:33,168 Stored in directory: /tmp/pip-ephem-wheel-cache-an3vvocw/wheels/94/14/a9/d1a03192f64b0d0e4cfce3003d601390ab5189b7aecd40be43 2025-06-02T01:48:33,188 Successfully built prfect 2025-06-02T01:48:33,234 Removed build tracker: '/tmp/pip-build-tracker-vck_dc_m'