2025-06-02T04:12:53,540 Created temporary directory: /tmp/pip-build-tracker-jby3lu21 2025-06-02T04:12:53,541 Initialized build tracking at /tmp/pip-build-tracker-jby3lu21 2025-06-02T04:12:53,541 Created build tracker: /tmp/pip-build-tracker-jby3lu21 2025-06-02T04:12:53,542 Entered build tracker: /tmp/pip-build-tracker-jby3lu21 2025-06-02T04:12:53,543 Created temporary directory: /tmp/pip-wheel-1w8fijnm 2025-06-02T04:12:53,547 Created temporary directory: /tmp/pip-ephem-wheel-cache-k_42h_r6 2025-06-02T04:12:53,599 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-06-02T04:12:53,601 2 location(s) to search for versions of rcsb-utils-taxonomy: 2025-06-02T04:12:53,601 * https://pypi.org/simple/rcsb-utils-taxonomy/ 2025-06-02T04:12:53,601 * https://www.piwheels.org/simple/rcsb-utils-taxonomy/ 2025-06-02T04:12:53,602 Fetching project page and analyzing links: https://pypi.org/simple/rcsb-utils-taxonomy/ 2025-06-02T04:12:53,603 Getting page https://pypi.org/simple/rcsb-utils-taxonomy/ 2025-06-02T04:12:53,604 Found index url https://pypi.org/simple/ 2025-06-02T04:12:53,835 Fetched page https://pypi.org/simple/rcsb-utils-taxonomy/ as application/vnd.pypi.simple.v1+json 2025-06-02T04:12:53,850 Skipping link: No binaries permitted for rcsb-utils-taxonomy: https://files.pythonhosted.org/packages/9d/96/0ddffbdd104bc410dcdd1436b0a7fe7e8b879498e774afbeaa4403800ee9/rcsb.utils.taxonomy-0.10-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-utils-taxonomy/) 2025-06-02T04:12:53,851 Found link https://files.pythonhosted.org/packages/7b/b8/a323b2660488e9d046f0874becdce7a54fcab77efcf38b4245ce6436657d/rcsb.utils.taxonomy-0.10.tar.gz (from https://pypi.org/simple/rcsb-utils-taxonomy/), version: 0.10 2025-06-02T04:12:53,852 Skipping link: No binaries permitted for rcsb-utils-taxonomy: https://files.pythonhosted.org/packages/77/fd/2d39e3fd0bcd8e9748985dad67d6fa28ac5dd8326b80577502f3ff1b1113/rcsb.utils.taxonomy-0.11-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-utils-taxonomy/) 2025-06-02T04:12:53,852 Found link https://files.pythonhosted.org/packages/28/d0/6638af2da47e0f81d62c4c68e169b1317da46565cb67d2baa029259653aa/rcsb.utils.taxonomy-0.11.tar.gz (from https://pypi.org/simple/rcsb-utils-taxonomy/), version: 0.11 2025-06-02T04:12:53,853 Skipping link: No binaries permitted for rcsb-utils-taxonomy: https://files.pythonhosted.org/packages/5a/c3/b1f4f1a4dd8fcbf2d794975b6e10236c470a5e334e41262ad93562bf4c5f/rcsb.utils.taxonomy-0.12-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-utils-taxonomy/) 2025-06-02T04:12:53,854 Found link https://files.pythonhosted.org/packages/c5/70/e7a16f65692dc2e8c9246faf1c1979127d9482698902f228613a2a1e7ae6/rcsb.utils.taxonomy-0.12.tar.gz (from https://pypi.org/simple/rcsb-utils-taxonomy/), version: 0.12 2025-06-02T04:12:53,855 Skipping link: No binaries permitted for rcsb-utils-taxonomy: https://files.pythonhosted.org/packages/a1/d7/48cef7c16131ca116020d2e21700e2d438c1e3ff48c3af2afbbb3e171be1/rcsb.utils.taxonomy-0.13-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-utils-taxonomy/) 2025-06-02T04:12:53,856 Found link https://files.pythonhosted.org/packages/05/3a/8839f95ab2689f7f141ac8bbde9fe20f4cf9027f8c4923a08516299aaea2/rcsb.utils.taxonomy-0.13.tar.gz (from https://pypi.org/simple/rcsb-utils-taxonomy/), version: 0.13 2025-06-02T04:12:53,857 Skipping link: No binaries permitted for rcsb-utils-taxonomy: https://files.pythonhosted.org/packages/34/d8/8904838be20068928109aeed6f7e3178096aa7d6eeee94484d27b48ae634/rcsb.utils.taxonomy-0.14-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-utils-taxonomy/) 2025-06-02T04:12:53,858 Found link https://files.pythonhosted.org/packages/32/e9/5f4d95a63efba17ac2cf2a3c8f0646787a6e12210fc454d13b5df0027001/rcsb.utils.taxonomy-0.14.tar.gz (from https://pypi.org/simple/rcsb-utils-taxonomy/), version: 0.14 2025-06-02T04:12:53,858 Skipping link: No binaries permitted for rcsb-utils-taxonomy: https://files.pythonhosted.org/packages/85/ae/5e111cb01264a5fa2accfcbd44def26cab5a2aff3936a9c0627c15f0ba2f/rcsb.utils.taxonomy-0.15-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-utils-taxonomy/) 2025-06-02T04:12:53,859 Found link https://files.pythonhosted.org/packages/04/2f/83a4ba432a9650ff80078aa61901189dae5221a929d04f0705ab9071e9e1/rcsb.utils.taxonomy-0.15.tar.gz (from https://pypi.org/simple/rcsb-utils-taxonomy/), version: 0.15 2025-06-02T04:12:53,860 Skipping link: No binaries permitted for rcsb-utils-taxonomy: https://files.pythonhosted.org/packages/63/e3/67efa5fabe3ecc0242faa0d407b6bfbade9a3536f140f31dad00b003af2a/rcsb.utils.taxonomy-0.16-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-utils-taxonomy/) 2025-06-02T04:12:53,861 Found link https://files.pythonhosted.org/packages/21/4b/181d3f5d14ecb1ff3a0fdcfacfac4408d001d991a34a0806aef99eb6e902/rcsb.utils.taxonomy-0.16.tar.gz (from https://pypi.org/simple/rcsb-utils-taxonomy/), version: 0.16 2025-06-02T04:12:53,861 Skipping link: No binaries permitted for rcsb-utils-taxonomy: https://files.pythonhosted.org/packages/b8/0b/6f0c6835292a9230cc36c98e208dc185896fb1349ba4a15c5d925e7fa065/rcsb.utils.taxonomy-0.17-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-utils-taxonomy/) 2025-06-02T04:12:53,862 Found link https://files.pythonhosted.org/packages/5e/07/ebadcbb90f8ed1ed009606d2e8732f7ecb94cae91ef339efaf07a99e8ddb/rcsb.utils.taxonomy-0.17.tar.gz (from https://pypi.org/simple/rcsb-utils-taxonomy/), version: 0.17 2025-06-02T04:12:53,862 Skipping link: No binaries permitted for rcsb-utils-taxonomy: https://files.pythonhosted.org/packages/d3/5c/07f50b3dd375150d349224a77c2282efc6da1abb8324baf8ca953939c808/rcsb.utils.taxonomy-0.18-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-utils-taxonomy/) 2025-06-02T04:12:53,863 Found link https://files.pythonhosted.org/packages/e2/39/9e2b774e35acf563056475433ae89750db84f97f8c2fbb9a9b27c0e9644b/rcsb.utils.taxonomy-0.18.tar.gz (from https://pypi.org/simple/rcsb-utils-taxonomy/), version: 0.18 2025-06-02T04:12:53,863 Skipping link: No binaries permitted for rcsb-utils-taxonomy: https://files.pythonhosted.org/packages/38/ab/bda758b82a00e88fc926731ffd484536d44eac2a70ce9cb26c66f6567b70/rcsb.utils.taxonomy-0.19-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-utils-taxonomy/) 2025-06-02T04:12:53,864 Found link https://files.pythonhosted.org/packages/99/ce/d52677879cb03a0de70cd0a53f7013603a9533dcc09d78bcbbfd11ee8b1b/rcsb.utils.taxonomy-0.19.tar.gz (from https://pypi.org/simple/rcsb-utils-taxonomy/), version: 0.19 2025-06-02T04:12:53,865 Skipping link: No binaries permitted for rcsb-utils-taxonomy: https://files.pythonhosted.org/packages/78/98/78470146f78e3d809dcdd4c14b19cdd62a46f2b5d79893a3e989e62442b2/rcsb.utils.taxonomy-0.21-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-utils-taxonomy/) 2025-06-02T04:12:53,865 Found link https://files.pythonhosted.org/packages/30/d1/655e7480dd1ea00bcc5890072c642d9ca3241b2e2c7a17af52ad0c3502df/rcsb.utils.taxonomy-0.21.tar.gz (from https://pypi.org/simple/rcsb-utils-taxonomy/), version: 0.21 2025-06-02T04:12:53,866 Skipping link: No binaries permitted for rcsb-utils-taxonomy: https://files.pythonhosted.org/packages/d6/1a/b8953227903a1d7795ed4515c3f13aaf5c551aa5bafd1b9bdb139fab3086/rcsb.utils.taxonomy-0.22-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-utils-taxonomy/) 2025-06-02T04:12:53,867 Found link https://files.pythonhosted.org/packages/30/89/9e2c9606958053e6a4eef1e33d4f6f9bcba21936b728cbe7100470b671c1/rcsb.utils.taxonomy-0.22.tar.gz (from https://pypi.org/simple/rcsb-utils-taxonomy/), version: 0.22 2025-06-02T04:12:53,867 Skipping link: No binaries permitted for rcsb-utils-taxonomy: https://files.pythonhosted.org/packages/91/3d/f936a836b1ae54d9f913fdb0ceed6c7caccadb7258faa1a18ef76f7c8b62/rcsb.utils.taxonomy-0.24-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-utils-taxonomy/) 2025-06-02T04:12:53,868 Found link https://files.pythonhosted.org/packages/03/a8/4754543de810bd6f792c2f49b036037a715728b80265f65d06424c5ece64/rcsb.utils.taxonomy-0.24.tar.gz (from https://pypi.org/simple/rcsb-utils-taxonomy/), version: 0.24 2025-06-02T04:12:53,869 Skipping link: No binaries permitted for rcsb-utils-taxonomy: https://files.pythonhosted.org/packages/42/a6/486d5435e755ac104620db670d5b6c8f18567a70c269779c906c84768456/rcsb.utils.taxonomy-0.25-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-utils-taxonomy/) 2025-06-02T04:12:53,869 Found link https://files.pythonhosted.org/packages/81/10/15812b0b1eca2b31500122a1f104ebf3a4775ee9fb1e4c27603f6271644d/rcsb.utils.taxonomy-0.25.tar.gz (from https://pypi.org/simple/rcsb-utils-taxonomy/), version: 0.25 2025-06-02T04:12:53,870 Skipping link: No binaries permitted for rcsb-utils-taxonomy: https://files.pythonhosted.org/packages/55/da/381f9f284052413d1df69c5ca5e2d35cd8fa547a5ebf0894f88882fa0e5c/rcsb.utils.taxonomy-0.26-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-utils-taxonomy/) 2025-06-02T04:12:53,871 Found link https://files.pythonhosted.org/packages/47/1f/9e27645b93c9c82ee7e09eb1250d61fee0ccac0bea1e1f7d293903ee7a92/rcsb.utils.taxonomy-0.26.tar.gz (from https://pypi.org/simple/rcsb-utils-taxonomy/), version: 0.26 2025-06-02T04:12:53,871 Skipping link: No binaries permitted for rcsb-utils-taxonomy: https://files.pythonhosted.org/packages/e5/78/993e661b5d22f41983c8dfb20325fdd306a586fb909a7f402f55ed754f2d/rcsb.utils.taxonomy-0.27-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-utils-taxonomy/) 2025-06-02T04:12:53,872 Found link https://files.pythonhosted.org/packages/7e/68/fc918383b0f569230f6196ab5039baee8cdc7e43097c6a7027e6b64e0f23/rcsb.utils.taxonomy-0.27.tar.gz (from https://pypi.org/simple/rcsb-utils-taxonomy/), version: 0.27 2025-06-02T04:12:53,873 Skipping link: No binaries permitted for rcsb-utils-taxonomy: https://files.pythonhosted.org/packages/04/dc/80d690cc220eec94d06307f946563844bf8635409fdfb79121b23888bdcf/rcsb.utils.taxonomy-0.28-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-utils-taxonomy/) 2025-06-02T04:12:53,873 Found link https://files.pythonhosted.org/packages/cf/62/67088c2b0745cc34f4f98c9f56c7164a58cf406a7addabbbe80537a2bf20/rcsb.utils.taxonomy-0.28.tar.gz (from https://pypi.org/simple/rcsb-utils-taxonomy/), version: 0.28 2025-06-02T04:12:53,874 Skipping link: No binaries permitted for rcsb-utils-taxonomy: https://files.pythonhosted.org/packages/43/36/99df435852de68903adb946b656b7dddf3137ecf09561deb7ede283bebf0/rcsb.utils.taxonomy-0.29-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-utils-taxonomy/) 2025-06-02T04:12:53,875 Found link https://files.pythonhosted.org/packages/f4/f3/4e9263d7e7b2b645b82ea99e2057db4a481612db2a3959f737e021fd9219/rcsb.utils.taxonomy-0.29.tar.gz (from https://pypi.org/simple/rcsb-utils-taxonomy/), version: 0.29 2025-06-02T04:12:53,875 Skipping link: No binaries permitted for rcsb-utils-taxonomy: https://files.pythonhosted.org/packages/e5/12/11fc417ad219fd0fde5b48424072c7da3ae27ae541a78cb82e1d1bbc1aa4/rcsb.utils.taxonomy-0.30-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-utils-taxonomy/) 2025-06-02T04:12:53,876 Found link https://files.pythonhosted.org/packages/74/ea/a7763b03cfa44d03e7201a497769f1215c3063881440725c4f3197f04aa2/rcsb.utils.taxonomy-0.30.tar.gz (from https://pypi.org/simple/rcsb-utils-taxonomy/), version: 0.30 2025-06-02T04:12:53,877 Skipping link: No binaries permitted for rcsb-utils-taxonomy: https://files.pythonhosted.org/packages/36/1b/781879cc8b63845a9b39f83a982dba85f670bbb4d5248a8aa16cc2272cbc/rcsb.utils.taxonomy-0.31-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-utils-taxonomy/) 2025-06-02T04:12:53,878 Found link https://files.pythonhosted.org/packages/65/83/15115a87e04f69bdb91c244cd3dac5388a47f1f2b44261459d6511beca0d/rcsb.utils.taxonomy-0.31.tar.gz (from https://pypi.org/simple/rcsb-utils-taxonomy/), version: 0.31 2025-06-02T04:12:53,878 Skipping link: No binaries permitted for rcsb-utils-taxonomy: https://files.pythonhosted.org/packages/14/e7/de1aef14493edca1368165564702b049681547f29d9a8dbf6c8c4a45fdd5/rcsb.utils.taxonomy-0.32-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-utils-taxonomy/) 2025-06-02T04:12:53,879 Found link https://files.pythonhosted.org/packages/3a/1f/7f4a87be37bc0dc869e323bfd049207fa3db160dee3a2ae8b1f6b18f8377/rcsb.utils.taxonomy-0.32.tar.gz (from https://pypi.org/simple/rcsb-utils-taxonomy/), version: 0.32 2025-06-02T04:12:53,880 Skipping link: No binaries permitted for rcsb-utils-taxonomy: https://files.pythonhosted.org/packages/06/1d/30ad850f049a2add6d66e87d5abc156a4eccab059c605e870f461f0fc414/rcsb.utils.taxonomy-0.33-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-utils-taxonomy/) 2025-06-02T04:12:53,881 Found link https://files.pythonhosted.org/packages/ca/8e/e8afa9a32fac1f311edf302c4a57b53523ac33e618900660a1a272dc3720/rcsb.utils.taxonomy-0.33.tar.gz (from https://pypi.org/simple/rcsb-utils-taxonomy/), version: 0.33 2025-06-02T04:12:53,882 Skipping link: No binaries permitted for rcsb-utils-taxonomy: https://files.pythonhosted.org/packages/be/94/7226139fdcb51fd52fd5853f550727000dbd8491743377c77fa744b245cf/rcsb.utils.taxonomy-0.34-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-utils-taxonomy/) 2025-06-02T04:12:53,882 Found link https://files.pythonhosted.org/packages/af/2d/b9929d967ea9913a053302b3fe79fb0e976f245f493f631fe580335a8ddf/rcsb.utils.taxonomy-0.34.tar.gz (from https://pypi.org/simple/rcsb-utils-taxonomy/), version: 0.34 2025-06-02T04:12:53,883 Skipping link: No binaries permitted for rcsb-utils-taxonomy: https://files.pythonhosted.org/packages/dd/b6/81bda8acb4c08e27bdd04d3806cfaca4090652f823da0b4eabc76a31fc10/rcsb.utils.taxonomy-0.35-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-utils-taxonomy/) 2025-06-02T04:12:53,883 Found link https://files.pythonhosted.org/packages/95/d7/ecdc2ee0fbc990308ceebcfb1b22f754650a15b24eb94070485a27b92407/rcsb.utils.taxonomy-0.35.tar.gz (from https://pypi.org/simple/rcsb-utils-taxonomy/), version: 0.35 2025-06-02T04:12:53,884 Skipping link: No binaries permitted for rcsb-utils-taxonomy: https://files.pythonhosted.org/packages/69/74/a654f5ef3d64afbe33f2dd0bea0dc7fab8bcbd6795e8f1aa467b95bf9f29/rcsb.utils.taxonomy-0.36-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-utils-taxonomy/) 2025-06-02T04:12:53,885 Found link https://files.pythonhosted.org/packages/3d/ee/238fd1a3130afa0016104ebe0434457330aca5fcab6899973402433c26b5/rcsb.utils.taxonomy-0.36.tar.gz (from https://pypi.org/simple/rcsb-utils-taxonomy/), version: 0.36 2025-06-02T04:12:53,885 Skipping link: No binaries permitted for rcsb-utils-taxonomy: https://files.pythonhosted.org/packages/d4/1b/a77e4ad9087a56071b7c6cf16cca62b03defb086f622a9064fee5e94bffe/rcsb.utils.taxonomy-0.37-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-utils-taxonomy/) 2025-06-02T04:12:53,886 Found link https://files.pythonhosted.org/packages/fd/68/dc878b66606dbef4d55f9d20fe82e102c226dc563840637e56c951c0e1b5/rcsb.utils.taxonomy-0.37.tar.gz (from https://pypi.org/simple/rcsb-utils-taxonomy/), version: 0.37 2025-06-02T04:12:53,887 Skipping link: No binaries permitted for rcsb-utils-taxonomy: https://files.pythonhosted.org/packages/30/fb/15854318a7112270a53524407914f8bbdccc8892d12567c0c95a54aa838a/rcsb.utils.taxonomy-0.38-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-utils-taxonomy/) 2025-06-02T04:12:53,888 Found link https://files.pythonhosted.org/packages/79/e5/8e68e4789d2f82aef8a009bbd31c645847fcdaf1f50de8f8af6410c61433/rcsb.utils.taxonomy-0.38.tar.gz (from https://pypi.org/simple/rcsb-utils-taxonomy/), version: 0.38 2025-06-02T04:12:53,888 Skipping link: No binaries permitted for rcsb-utils-taxonomy: https://files.pythonhosted.org/packages/44/9e/115cd282e871a7f4f00b21fd722d6eff2dbf82e024fd817ba882141a3927/rcsb.utils.taxonomy-0.39-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-utils-taxonomy/) 2025-06-02T04:12:53,889 Found link https://files.pythonhosted.org/packages/f9/a4/d3e514a3be8f0d37c189a63f76ad4518115828c6f389c60cf68b82a63aa4/rcsb.utils.taxonomy-0.39.tar.gz (from https://pypi.org/simple/rcsb-utils-taxonomy/), version: 0.39 2025-06-02T04:12:53,890 Skipping link: No binaries permitted for rcsb-utils-taxonomy: https://files.pythonhosted.org/packages/d3/75/1932b7ec462a969de69ce6f76964edb299176030389aa6322f3015318e9d/rcsb.utils.taxonomy-0.40-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-utils-taxonomy/) 2025-06-02T04:12:53,891 Found link https://files.pythonhosted.org/packages/d9/2a/79b45330c4e71d4519340721f5e3ddf271af0fb2d0dd06bef3e38308950b/rcsb.utils.taxonomy-0.40.tar.gz (from https://pypi.org/simple/rcsb-utils-taxonomy/), version: 0.40 2025-06-02T04:12:53,892 Skipping link: No binaries permitted for rcsb-utils-taxonomy: https://files.pythonhosted.org/packages/79/c1/3855384082c5b006682499c0edd030c70509f15da9214257139824a446bd/rcsb.utils.taxonomy-0.41-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-utils-taxonomy/) 2025-06-02T04:12:53,892 Found link https://files.pythonhosted.org/packages/0c/de/37823d0fb3bf77808c11fb7f0177321d53b98d3c2ee29228ddbcc3901707/rcsb.utils.taxonomy-0.41.tar.gz (from https://pypi.org/simple/rcsb-utils-taxonomy/), version: 0.41 2025-06-02T04:12:53,893 Skipping link: No binaries permitted for rcsb-utils-taxonomy: https://files.pythonhosted.org/packages/9a/7f/2c3e2c6f83e60eefddaff6e595f91501346d64d015239f5372ea8359cd0e/rcsb.utils.taxonomy-0.42-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-utils-taxonomy/) 2025-06-02T04:12:53,893 Found link https://files.pythonhosted.org/packages/81/1e/cc7f3daa55ab183213222b0af1761ea903a6a143af9f81ed3d9a0aeb666a/rcsb.utils.taxonomy-0.42.tar.gz (from https://pypi.org/simple/rcsb-utils-taxonomy/), version: 0.42 2025-06-02T04:12:53,894 Skipping link: No binaries permitted for rcsb-utils-taxonomy: https://files.pythonhosted.org/packages/c1/99/c433567cfb62d7b655a393eeb1dc1a65c3c0743cf701644baf040cc72fc6/rcsb.utils.taxonomy-0.43-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-utils-taxonomy/) 2025-06-02T04:12:53,895 Found link https://files.pythonhosted.org/packages/8b/b7/ec33c44312b8bea6dfd54608b4d2ee5fbd2f3874dd70ac2cec72f46f2768/rcsb.utils.taxonomy-0.43.tar.gz (from https://pypi.org/simple/rcsb-utils-taxonomy/), version: 0.43 2025-06-02T04:12:53,896 Skipping link: No binaries permitted for rcsb-utils-taxonomy: https://files.pythonhosted.org/packages/51/6e/81f829450ba383af1fc22ac80978de7174817dc4f39469f9b60df0739063/rcsb.utils.taxonomy-0.44-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-utils-taxonomy/) 2025-06-02T04:12:53,897 Found link https://files.pythonhosted.org/packages/23/98/288442a035d1e4bb06ad2fd021427ac11ccd796682c745366078f3dd223a/rcsb_utils_taxonomy-0.44.tar.gz (from https://pypi.org/simple/rcsb-utils-taxonomy/), version: 0.44 2025-06-02T04:12:53,897 Skipping link: No binaries permitted for rcsb-utils-taxonomy: https://files.pythonhosted.org/packages/29/d6/fde2a8a5aab188424477cd3a6fcf2af30c9d77865c0b809548fd7b54fc25/rcsb.utils.taxonomy-0.45-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-utils-taxonomy/) 2025-06-02T04:12:53,898 Skipping link: No binaries permitted for rcsb-utils-taxonomy: https://files.pythonhosted.org/packages/cd/38/512c952228678e98977b998e475819181654d2ea3520ce5ed0a2d36c42cf/rcsb_utils_taxonomy-0.45-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-utils-taxonomy/) 2025-06-02T04:12:53,899 Found link https://files.pythonhosted.org/packages/d6/4f/2b384a8fc7336f5678c6e43420ed279a133233b55eb4eb07d949d4408a40/rcsb_utils_taxonomy-0.45.tar.gz (from https://pypi.org/simple/rcsb-utils-taxonomy/), version: 0.45 2025-06-02T04:12:53,900 Skipping link: No binaries permitted for rcsb-utils-taxonomy: https://files.pythonhosted.org/packages/21/14/2dfd437f91c75ca92a0dbe4c7f19e6903b959a4640ec2e3d1cf846326558/rcsb_utils_taxonomy-0.46-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-utils-taxonomy/) 2025-06-02T04:12:53,900 Found link https://files.pythonhosted.org/packages/4f/48/a0debf3d7a102ae875210197c5f4faec1e18514380f5263ab52068f3ea65/rcsb_utils_taxonomy-0.46.tar.gz (from https://pypi.org/simple/rcsb-utils-taxonomy/), version: 0.46 2025-06-02T04:12:53,901 Fetching project page and analyzing links: https://www.piwheels.org/simple/rcsb-utils-taxonomy/ 2025-06-02T04:12:53,902 Getting page https://www.piwheels.org/simple/rcsb-utils-taxonomy/ 2025-06-02T04:12:53,903 Found index url https://www.piwheels.org/simple/ 2025-06-02T04:12:54,066 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/rcsb-utils-taxonomy/ 2025-06-02T04:12:54,723 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/rcsb-utils-taxonomy/ 2025-06-02T04:12:55,892 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/rcsb-utils-taxonomy/ 2025-06-02T04:12:58,061 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/rcsb-utils-taxonomy/ 2025-06-02T04:13:02,246 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/rcsb-utils-taxonomy/ 2025-06-02T04:13:02,425 Could not fetch URL https://www.piwheels.org/simple/rcsb-utils-taxonomy/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/rcsb-utils-taxonomy/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping 2025-06-02T04:13:02,427 Skipping link: not a file: https://www.piwheels.org/simple/rcsb-utils-taxonomy/ 2025-06-02T04:13:02,428 Skipping link: not a file: https://pypi.org/simple/rcsb-utils-taxonomy/ 2025-06-02T04:13:02,451 Given no hashes to check 1 links for project 'rcsb-utils-taxonomy': discarding no candidates 2025-06-02T04:13:02,453 Collecting rcsb-utils-taxonomy==0.46 2025-06-02T04:13:02,455 Created temporary directory: /tmp/pip-unpack-wipudx31 2025-06-02T04:13:02,680 Downloading rcsb_utils_taxonomy-0.46.tar.gz (10 kB) 2025-06-02T04:13:02,734 Added rcsb-utils-taxonomy==0.46 from https://files.pythonhosted.org/packages/4f/48/a0debf3d7a102ae875210197c5f4faec1e18514380f5263ab52068f3ea65/rcsb_utils_taxonomy-0.46.tar.gz to build tracker '/tmp/pip-build-tracker-jby3lu21' 2025-06-02T04:13:02,736 Running setup.py (path:/tmp/pip-wheel-1w8fijnm/rcsb-utils-taxonomy_c0f5cb57feab4f77a0e58583450cb7c2/setup.py) egg_info for package rcsb-utils-taxonomy 2025-06-02T04:13:02,738 Created temporary directory: /tmp/pip-pip-egg-info-a2hy43vg 2025-06-02T04:13:02,738 Preparing metadata (setup.py): started 2025-06-02T04:13:02,740 Running command python setup.py egg_info 2025-06-02T04:13:03,362 Warning: 'classifiers' should be a list, got type 'tuple' 2025-06-02T04:13:03,363 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-06-02T04:13:03,364 warnings.warn(msg) 2025-06-02T04:13:03,365 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-06-02T04:13:03,365 warnings.warn(msg) 2025-06-02T04:13:03,694 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-06-02T04:13:03,695 !! 2025-06-02T04:13:03,696 ******************************************************************************** 2025-06-02T04:13:03,697 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-06-02T04:13:03,698 License :: OSI Approved :: Apache Software License 2025-06-02T04:13:03,699 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-02T04:13:03,700 ******************************************************************************** 2025-06-02T04:13:03,701 !! 2025-06-02T04:13:03,701 self._finalize_license_expression() 2025-06-02T04:13:03,724 running egg_info 2025-06-02T04:13:03,752 creating /tmp/pip-pip-egg-info-a2hy43vg/rcsb.utils.taxonomy.egg-info 2025-06-02T04:13:03,753 writing /tmp/pip-pip-egg-info-a2hy43vg/rcsb.utils.taxonomy.egg-info/PKG-INFO 2025-06-02T04:13:03,758 writing dependency_links to /tmp/pip-pip-egg-info-a2hy43vg/rcsb.utils.taxonomy.egg-info/dependency_links.txt 2025-06-02T04:13:03,760 writing requirements to /tmp/pip-pip-egg-info-a2hy43vg/rcsb.utils.taxonomy.egg-info/requires.txt 2025-06-02T04:13:03,761 writing top-level names to /tmp/pip-pip-egg-info-a2hy43vg/rcsb.utils.taxonomy.egg-info/top_level.txt 2025-06-02T04:13:03,763 writing manifest file '/tmp/pip-pip-egg-info-a2hy43vg/rcsb.utils.taxonomy.egg-info/SOURCES.txt' 2025-06-02T04:13:03,864 reading manifest file '/tmp/pip-pip-egg-info-a2hy43vg/rcsb.utils.taxonomy.egg-info/SOURCES.txt' 2025-06-02T04:13:03,867 reading manifest template 'MANIFEST.in' 2025-06-02T04:13:03,868 adding license file 'LICENSE' 2025-06-02T04:13:03,871 writing manifest file '/tmp/pip-pip-egg-info-a2hy43vg/rcsb.utils.taxonomy.egg-info/SOURCES.txt' 2025-06-02T04:13:03,978 Preparing metadata (setup.py): finished with status 'done' 2025-06-02T04:13:03,982 Source in /tmp/pip-wheel-1w8fijnm/rcsb-utils-taxonomy_c0f5cb57feab4f77a0e58583450cb7c2 has version 0.46, which satisfies requirement rcsb-utils-taxonomy==0.46 from https://files.pythonhosted.org/packages/4f/48/a0debf3d7a102ae875210197c5f4faec1e18514380f5263ab52068f3ea65/rcsb_utils_taxonomy-0.46.tar.gz 2025-06-02T04:13:03,983 Removed rcsb-utils-taxonomy==0.46 from https://files.pythonhosted.org/packages/4f/48/a0debf3d7a102ae875210197c5f4faec1e18514380f5263ab52068f3ea65/rcsb_utils_taxonomy-0.46.tar.gz from build tracker '/tmp/pip-build-tracker-jby3lu21' 2025-06-02T04:13:03,989 Created temporary directory: /tmp/pip-unpack-cxwzqgn1 2025-06-02T04:13:03,990 Created temporary directory: /tmp/pip-unpack-1jxroybw 2025-06-02T04:13:03,990 Building wheels for collected packages: rcsb-utils-taxonomy 2025-06-02T04:13:03,994 Created temporary directory: /tmp/pip-wheel-6hdcvykg 2025-06-02T04:13:03,995 DEPRECATION: Building 'rcsb-utils-taxonomy' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'rcsb-utils-taxonomy'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-06-02T04:13:03,997 Building wheel for rcsb-utils-taxonomy (setup.py): started 2025-06-02T04:13:03,998 Destination directory: /tmp/pip-wheel-6hdcvykg 2025-06-02T04:13:03,998 Running command python setup.py bdist_wheel 2025-06-02T04:13:04,584 Warning: 'classifiers' should be a list, got type 'tuple' 2025-06-02T04:13:04,585 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-06-02T04:13:04,586 warnings.warn(msg) 2025-06-02T04:13:04,587 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-06-02T04:13:04,588 warnings.warn(msg) 2025-06-02T04:13:04,914 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-06-02T04:13:04,914 !! 2025-06-02T04:13:04,916 ******************************************************************************** 2025-06-02T04:13:04,917 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-06-02T04:13:04,919 License :: OSI Approved :: Apache Software License 2025-06-02T04:13:04,920 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-02T04:13:04,921 ******************************************************************************** 2025-06-02T04:13:04,922 !! 2025-06-02T04:13:04,922 self._finalize_license_expression() 2025-06-02T04:13:04,923 running bdist_wheel 2025-06-02T04:13:05,005 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:135: SetuptoolsDeprecationWarning: bdist_wheel.universal is deprecated 2025-06-02T04:13:05,006 !! 2025-06-02T04:13:05,007 ******************************************************************************** 2025-06-02T04:13:05,007 With Python 2.7 end-of-life, support for building universal wheels 2025-06-02T04:13:05,008 (i.e., wheels that support both Python 2 and Python 3) 2025-06-02T04:13:05,008 is being obviated. 2025-06-02T04:13:05,009 Please discontinue using this option, or if you still need it, 2025-06-02T04:13:05,009 file an issue with pypa/setuptools describing your use case. 2025-06-02T04:13:05,010 By 2025-Aug-30, you need to update your project and remove deprecated calls 2025-06-02T04:13:05,011 or your builds will no longer be supported. 2025-06-02T04:13:05,011 ******************************************************************************** 2025-06-02T04:13:05,013 !! 2025-06-02T04:13:05,013 self.finalize_options() 2025-06-02T04:13:05,065 running build 2025-06-02T04:13:05,066 running build_py 2025-06-02T04:13:05,109 creating build/lib/rcsb 2025-06-02T04:13:05,116 copying rcsb/__init__.py -> build/lib/rcsb 2025-06-02T04:13:05,122 creating build/lib/rcsb/utils 2025-06-02T04:13:05,125 copying rcsb/utils/__init__.py -> build/lib/rcsb/utils 2025-06-02T04:13:05,130 creating build/lib/rcsb/utils/taxonomy 2025-06-02T04:13:05,132 copying rcsb/utils/taxonomy/TaxonomyProvider.py -> build/lib/rcsb/utils/taxonomy 2025-06-02T04:13:05,138 copying rcsb/utils/taxonomy/__init__.py -> build/lib/rcsb/utils/taxonomy 2025-06-02T04:13:05,187 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-06-02T04:13:05,188 !! 2025-06-02T04:13:05,189 ******************************************************************************** 2025-06-02T04:13:05,190 Please avoid running ``setup.py`` directly. 2025-06-02T04:13:05,191 Instead, use pypa/build, pypa/installer or other 2025-06-02T04:13:05,191 standards-based tools. 2025-06-02T04:13:05,192 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-06-02T04:13:05,193 or your builds will no longer be supported. 2025-06-02T04:13:05,194 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-06-02T04:13:05,195 ******************************************************************************** 2025-06-02T04:13:05,197 !! 2025-06-02T04:13:05,198 self.initialize_options() 2025-06-02T04:13:05,223 installing to build/bdist.linux-armv7l/wheel 2025-06-02T04:13:05,224 running install 2025-06-02T04:13:05,251 running install_lib 2025-06-02T04:13:05,593 creating build/bdist.linux-armv7l/wheel 2025-06-02T04:13:05,596 creating build/bdist.linux-armv7l/wheel/rcsb 2025-06-02T04:13:05,598 copying build/lib/rcsb/__init__.py -> build/bdist.linux-armv7l/wheel/./rcsb 2025-06-02T04:13:05,601 creating build/bdist.linux-armv7l/wheel/rcsb/utils 2025-06-02T04:13:05,602 copying build/lib/rcsb/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./rcsb/utils 2025-06-02T04:13:05,605 creating build/bdist.linux-armv7l/wheel/rcsb/utils/taxonomy 2025-06-02T04:13:05,607 copying build/lib/rcsb/utils/taxonomy/TaxonomyProvider.py -> build/bdist.linux-armv7l/wheel/./rcsb/utils/taxonomy 2025-06-02T04:13:05,610 copying build/lib/rcsb/utils/taxonomy/__init__.py -> build/bdist.linux-armv7l/wheel/./rcsb/utils/taxonomy 2025-06-02T04:13:05,612 running install_egg_info 2025-06-02T04:13:05,649 running egg_info 2025-06-02T04:13:05,677 writing rcsb.utils.taxonomy.egg-info/PKG-INFO 2025-06-02T04:13:05,680 writing dependency_links to rcsb.utils.taxonomy.egg-info/dependency_links.txt 2025-06-02T04:13:05,683 writing requirements to rcsb.utils.taxonomy.egg-info/requires.txt 2025-06-02T04:13:05,684 writing top-level names to rcsb.utils.taxonomy.egg-info/top_level.txt 2025-06-02T04:13:05,721 reading manifest file 'rcsb.utils.taxonomy.egg-info/SOURCES.txt' 2025-06-02T04:13:05,724 reading manifest template 'MANIFEST.in' 2025-06-02T04:13:05,725 adding license file 'LICENSE' 2025-06-02T04:13:05,728 writing manifest file 'rcsb.utils.taxonomy.egg-info/SOURCES.txt' 2025-06-02T04:13:05,729 Copying rcsb.utils.taxonomy.egg-info to build/bdist.linux-armv7l/wheel/./rcsb.utils.taxonomy-0.46-py3.11.egg-info 2025-06-02T04:13:05,740 running install_scripts 2025-06-02T04:13:05,752 creating build/bdist.linux-armv7l/wheel/rcsb_utils_taxonomy-0.46.dist-info/WHEEL 2025-06-02T04:13:05,755 creating '/tmp/pip-wheel-6hdcvykg/rcsb_utils_taxonomy-0.46-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-06-02T04:13:05,758 adding 'rcsb/__init__.py' 2025-06-02T04:13:05,760 adding 'rcsb/utils/__init__.py' 2025-06-02T04:13:05,765 adding 'rcsb/utils/taxonomy/TaxonomyProvider.py' 2025-06-02T04:13:05,766 adding 'rcsb/utils/taxonomy/__init__.py' 2025-06-02T04:13:05,769 adding 'rcsb_utils_taxonomy-0.46.dist-info/licenses/LICENSE' 2025-06-02T04:13:05,771 adding 'rcsb_utils_taxonomy-0.46.dist-info/METADATA' 2025-06-02T04:13:05,772 adding 'rcsb_utils_taxonomy-0.46.dist-info/WHEEL' 2025-06-02T04:13:05,773 adding 'rcsb_utils_taxonomy-0.46.dist-info/top_level.txt' 2025-06-02T04:13:05,774 adding 'rcsb_utils_taxonomy-0.46.dist-info/RECORD' 2025-06-02T04:13:05,776 removing build/bdist.linux-armv7l/wheel 2025-06-02T04:13:05,889 Building wheel for rcsb-utils-taxonomy (setup.py): finished with status 'done' 2025-06-02T04:13:05,891 Created wheel for rcsb-utils-taxonomy: filename=rcsb_utils_taxonomy-0.46-py2.py3-none-any.whl size=9223 sha256=5b48cd2ed5311fe849f2af5370834ca4b715d6a0ab114962f81e084067f4a72a 2025-06-02T04:13:05,892 Stored in directory: /tmp/pip-ephem-wheel-cache-k_42h_r6/wheels/f7/a4/4b/78c7af983f3b255e94f7d779df4d625c39cea5047ce96690fd 2025-06-02T04:13:05,904 Successfully built rcsb-utils-taxonomy 2025-06-02T04:13:05,907 Removed build tracker: '/tmp/pip-build-tracker-jby3lu21'