2025-06-02T10:43:53,483 Created temporary directory: /tmp/pip-build-tracker-z3oy4bx6
2025-06-02T10:43:53,484 Initialized build tracking at /tmp/pip-build-tracker-z3oy4bx6
2025-06-02T10:43:53,484 Created build tracker: /tmp/pip-build-tracker-z3oy4bx6
2025-06-02T10:43:53,485 Entered build tracker: /tmp/pip-build-tracker-z3oy4bx6
2025-06-02T10:43:53,486 Created temporary directory: /tmp/pip-wheel-51n5mt2p
2025-06-02T10:43:53,490 Created temporary directory: /tmp/pip-ephem-wheel-cache-wc1gt_s1
2025-06-02T10:43:53,539 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-06-02T10:43:53,541 2 location(s) to search for versions of wwpdb-utils-emdb:
2025-06-02T10:43:53,541 * https://pypi.org/simple/wwpdb-utils-emdb/
2025-06-02T10:43:53,541 * https://www.piwheels.org/simple/wwpdb-utils-emdb/
2025-06-02T10:43:53,542 Fetching project page and analyzing links: https://pypi.org/simple/wwpdb-utils-emdb/
2025-06-02T10:43:53,543 Getting page https://pypi.org/simple/wwpdb-utils-emdb/
2025-06-02T10:43:53,544 Found index url https://pypi.org/simple/
2025-06-02T10:43:53,766 Fetched page https://pypi.org/simple/wwpdb-utils-emdb/ as application/vnd.pypi.simple.v1+json
2025-06-02T10:43:53,773   Skipping link: No binaries permitted for wwpdb-utils-emdb: https://files.pythonhosted.org/packages/e4/6b/cd29b7e6a18b5cb6900bbeaa82b2a57a82f156ef1484ade93cc0161120e3/wwpdb.utils.emdb-0.17.dev1-py2.py3-none-any.whl (from https://pypi.org/simple/wwpdb-utils-emdb/)
2025-06-02T10:43:53,773   Found link https://files.pythonhosted.org/packages/c7/71/97b1ad4dc41b921f129625ae155fa0cbb571531f53735f2bac18af2f155e/wwpdb.utils.emdb-0.17.dev1.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 0.17.dev1
2025-06-02T10:43:53,774   Skipping link: No binaries permitted for wwpdb-utils-emdb: https://files.pythonhosted.org/packages/4f/82/cfb7e14749778943ffa246f9ae7e16f1db56e54272cfe7d9e50cb43e801a/wwpdb.utils.emdb-0.17.dev2-py2.py3-none-any.whl (from https://pypi.org/simple/wwpdb-utils-emdb/)
2025-06-02T10:43:53,774   Found link https://files.pythonhosted.org/packages/0b/b8/99ae0b81475ec00734c681affe0f3e0bedada231fa6f3bb45e74836e160f/wwpdb.utils.emdb-0.17.dev2.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 0.17.dev2
2025-06-02T10:43:53,775   Skipping link: No binaries permitted for wwpdb-utils-emdb: https://files.pythonhosted.org/packages/37/81/cc80b184507eefd3a3bac5eea9e197e4a4b7c3a85561e0a7c05d7a67c26a/wwpdb.utils.emdb-0.17.dev3-py2.py3-none-any.whl (from https://pypi.org/simple/wwpdb-utils-emdb/)
2025-06-02T10:43:53,776   Found link https://files.pythonhosted.org/packages/7c/21/adc194f4f64c450239f72966e08798d7ab7569cc7f30847e42d2f90bdc2c/wwpdb.utils.emdb-0.17.dev3.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 0.17.dev3
2025-06-02T10:43:53,777   Skipping link: No binaries permitted for wwpdb-utils-emdb: https://files.pythonhosted.org/packages/ed/c8/a8d6f4397d82cc105c4e3b72e0c581b2e49a5b732dbb446d228b464835e5/wwpdb.utils.emdb-0.17.dev4-py2.py3-none-any.whl (from https://pypi.org/simple/wwpdb-utils-emdb/)
2025-06-02T10:43:53,777   Found link https://files.pythonhosted.org/packages/68/4c/16b39751be7b36fbd5ca19d3704c3363089d353c2f0deb0a3e7295322bed/wwpdb.utils.emdb-0.17.dev4.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 0.17.dev4
2025-06-02T10:43:53,778   Skipping link: No binaries permitted for wwpdb-utils-emdb: https://files.pythonhosted.org/packages/5b/1b/691f386de795fa7daf6e7498aed2aec28f890659de9d27e2bac7b97fc6e4/wwpdb.utils.emdb-0.17.dev5-py2.py3-none-any.whl (from https://pypi.org/simple/wwpdb-utils-emdb/)
2025-06-02T10:43:53,779   Found link https://files.pythonhosted.org/packages/63/15/972c36a225f33f25966ce683935dc1e91b38a420ede4d6fac6f920db7486/wwpdb.utils.emdb-0.17.dev5.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 0.17.dev5
2025-06-02T10:43:53,779   Skipping link: No binaries permitted for wwpdb-utils-emdb: https://files.pythonhosted.org/packages/03/60/fae10b43b39d42be7628c346315258182617324063494daab1e810e49fd3/wwpdb.utils.emdb-0.17-py2.py3-none-any.whl (from https://pypi.org/simple/wwpdb-utils-emdb/)
2025-06-02T10:43:53,780   Found link https://files.pythonhosted.org/packages/0e/bc/e9e5d76046347d72762aa539dba5f80dd87cdc1966aee5ef866665b218dd/wwpdb.utils.emdb-0.17.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 0.17
2025-06-02T10:43:53,781   Skipping link: No binaries permitted for wwpdb-utils-emdb: https://files.pythonhosted.org/packages/c4/4a/7c04212dd000a4bf7373e9bcd9a8204f37faac616a7a635c90a55900ddcf/wwpdb.utils.emdb-0.18.dev1-py2.py3-none-any.whl (from https://pypi.org/simple/wwpdb-utils-emdb/)
2025-06-02T10:43:53,781   Found link https://files.pythonhosted.org/packages/fd/6f/22272f5b1db34ba594c03c65bf404032ce79036e50d5cf5d7f13f40a5046/wwpdb.utils.emdb-0.18.dev1.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 0.18.dev1
2025-06-02T10:43:53,782   Skipping link: No binaries permitted for wwpdb-utils-emdb: https://files.pythonhosted.org/packages/c8/34/88ddc7a182feba8963c87cf0f4a50cac8fe8d28f9c7ea5a147dd2201ce04/wwpdb.utils.emdb-0.18.dev2-py2.py3-none-any.whl (from https://pypi.org/simple/wwpdb-utils-emdb/)
2025-06-02T10:43:53,783   Found link https://files.pythonhosted.org/packages/3f/68/9183d0ee93c5d22a4b3d023b485e90a1f1bb8df90a6ebaa3438867b007ad/wwpdb.utils.emdb-0.18.dev2.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 0.18.dev2
2025-06-02T10:43:53,783   Skipping link: No binaries permitted for wwpdb-utils-emdb: https://files.pythonhosted.org/packages/f4/54/a283c43315bb19d33353389f3d28e31f715e7e5a37054d9e79033373e953/wwpdb.utils.emdb-0.19-py2.py3-none-any.whl (from https://pypi.org/simple/wwpdb-utils-emdb/)
2025-06-02T10:43:53,784   Found link https://files.pythonhosted.org/packages/bc/41/cef5c9914d65e70c678b23eccb6b61b665de7ac5ebd5b3821416083a7136/wwpdb.utils.emdb-0.19.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 0.19
2025-06-02T10:43:53,784   Skipping link: No binaries permitted for wwpdb-utils-emdb: https://files.pythonhosted.org/packages/7a/a2/61033a93601cbe6bec8b36cf6c5c97a8db77bb9311df4c9aefdd29820e21/wwpdb.utils.emdb-0.20.dev1-py2.py3-none-any.whl (from https://pypi.org/simple/wwpdb-utils-emdb/)
2025-06-02T10:43:53,785   Found link https://files.pythonhosted.org/packages/2c/6a/59351fd024bda09d21785f99cedf31c268f1ede51953a9e72372b5ebf70b/wwpdb.utils.emdb-0.20.dev1.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 0.20.dev1
2025-06-02T10:43:53,785   Skipping link: No binaries permitted for wwpdb-utils-emdb: https://files.pythonhosted.org/packages/c6/fb/5e6fc23a549145bd27236024a21344b14f722141db3189a614f6304c313a/wwpdb.utils.emdb-0.20-py2.py3-none-any.whl (from https://pypi.org/simple/wwpdb-utils-emdb/)
2025-06-02T10:43:53,786   Found link https://files.pythonhosted.org/packages/70/1a/64831912f4e4cece786e9e79dc55d5a70e4de45bb341ac51f02a29f9f3eb/wwpdb.utils.emdb-0.20.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 0.20
2025-06-02T10:43:53,786   Found link https://files.pythonhosted.org/packages/89/b6/dd1281921231718e564b22d7ed87eb92906d9a92910a68f59be4053acf48/wwpdb.utils.emdb-0.21.dev1.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 0.21.dev1
2025-06-02T10:43:53,787   Found link https://files.pythonhosted.org/packages/b6/be/41e784e4ae252a76602b468be5c0a5b4d9a6d25c37dfb48214348bcae988/wwpdb.utils.emdb-0.21.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 0.21
2025-06-02T10:43:53,788   Found link https://files.pythonhosted.org/packages/c8/3a/70341fe8c0eadbcab5d8e48e9c5a372d9b3943e2593b0d0574a0cfb319ca/wwpdb.utils.emdb-0.22.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 0.22
2025-06-02T10:43:53,789   Found link https://files.pythonhosted.org/packages/96/67/53035231bcd2e7cecb692bbd76ae03e1c513b57c54c8c330052bb7d12b00/wwpdb.utils.emdb-1.0.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.0
2025-06-02T10:43:53,789   Found link https://files.pythonhosted.org/packages/49/be/a598ef3f897cc36cffb09c0ee7e1f5acec88f3bd45ab4ffaed5e53da988b/wwpdb.utils.emdb-1.0.1.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.0.1
2025-06-02T10:43:53,790   Found link https://files.pythonhosted.org/packages/17/c4/a4294d38f9327a0bd51deee6e73e9e19bc3044ad5831b3ff419f2ce24f46/wwpdb.utils.emdb-1.0.2.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.0.2
2025-06-02T10:43:53,791   Found link https://files.pythonhosted.org/packages/6e/10/a90d10dd1a0a50ebca3bf42ecbc2bfdab4f6193cb09d5c963ff358bdb196/wwpdb.utils.emdb-1.1.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.1
2025-06-02T10:43:53,791   Found link https://files.pythonhosted.org/packages/8f/9d/b1dec6ee336940c23bfbe48e27f4da5738d8d7bf5b078dad2e9d7e0ce5bd/wwpdb.utils.emdb-1.2.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.2
2025-06-02T10:43:53,792   Found link https://files.pythonhosted.org/packages/f1/18/a56d35874d6a723c8bda6cbf7042f0b14d6675e406bae95ebbe28bc4a24d/wwpdb.utils.emdb-1.3.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.3
2025-06-02T10:43:53,793   Found link https://files.pythonhosted.org/packages/d8/66/ba9f56f9849b940ce1eb33697afde055a67773cf8ae288baf0f6285e2ca7/wwpdb.utils.emdb-1.4.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.4
2025-06-02T10:43:53,793   Found link https://files.pythonhosted.org/packages/ab/37/d0aed09af6a0257a9a40ff21b5c864c5cc26babb6786fdfc864c31c8c9e1/wwpdb.utils.emdb-1.4.1.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.4.1
2025-06-02T10:43:53,794   Found link https://files.pythonhosted.org/packages/9c/b4/8147abc8ffe8678e7f504310264f40ea016c71953a8d0f254388dc586cf5/wwpdb.utils.emdb-1.4.2.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.4.2
2025-06-02T10:43:53,794   Found link https://files.pythonhosted.org/packages/3a/86/9eb0994dc31303421b06591ac856173716454e29e29fe5305d314ee79656/wwpdb.utils.emdb-1.4.3.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.4.3
2025-06-02T10:43:53,795   Found link https://files.pythonhosted.org/packages/22/aa/2d2b188ad23ae0ad8349dc8e457b758029190b8910e8a3550cf5bafbc92c/wwpdb.utils.emdb-1.5.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.5
2025-06-02T10:43:53,795   Found link https://files.pythonhosted.org/packages/85/df/427630c38d54a8a7cb3cc63e4f7392c7e74a4febbc14c09124de61366f50/wwpdb.utils.emdb-1.5.1.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.5.1
2025-06-02T10:43:53,796   Found link https://files.pythonhosted.org/packages/cd/e3/0a9f818d6c77b9018bf1b257bc58a7414d4e100181304b968efe2b653897/wwpdb.utils.emdb-1.6.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.6
2025-06-02T10:43:53,797   Found link https://files.pythonhosted.org/packages/76/f5/633642fe5034b658366e8b843d8cbedaacfc3911b0cb6993d981d8de0656/wwpdb.utils.emdb-1.6.1.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.6.1
2025-06-02T10:43:53,797   Found link https://files.pythonhosted.org/packages/d0/7c/abfef64f8e5d8478bafe3f15c60ada57ffed7f9579171001f5dd18a29a75/wwpdb.utils.emdb-1.7.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.7
2025-06-02T10:43:53,798   Found link https://files.pythonhosted.org/packages/12/15/ccfb3d4bdad665a12d76f9006b11c80c65c2d52e6508b03f140c4a462e64/wwpdb.utils.emdb-1.7.1.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.7.1
2025-06-02T10:43:53,799   Found link https://files.pythonhosted.org/packages/7e/54/eaf27a4d50d0b5a5b659aa778fe35f179579978726b32f2af46392d2529a/wwpdb.utils.emdb-1.8.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.8
2025-06-02T10:43:53,799   Found link https://files.pythonhosted.org/packages/a4/8b/1cabc5852353513e58516a2417fa19935a8e892f1021f9c8e43ec62dd047/wwpdb_utils_emdb-1.8.1.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.8.1
2025-06-02T10:43:53,800   Found link https://files.pythonhosted.org/packages/5c/06/1fc28acdd958fe6a739afcbfe42f171caccc4227643f22f7817d30dd5508/wwpdb_utils_emdb-1.8.2.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.8.2
2025-06-02T10:43:53,801   Found link https://files.pythonhosted.org/packages/9c/ab/daba44555dc30440234f459feedc512a74f16aa094f52a22eba897182c6c/wwpdb_utils_emdb-1.9.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.9
2025-06-02T10:43:53,801   Found link https://files.pythonhosted.org/packages/2e/11/8b0e1816b711004d8f0d38935aea1b2c68f8e6dc88e5d6ba1e6db6ef90b2/wwpdb_utils_emdb-1.10.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.10
2025-06-02T10:43:53,802   Found link https://files.pythonhosted.org/packages/f3/e7/0a662612f5a69eea908240bc0350da3d8a25ad75deb728a4266a03508d56/wwpdb_utils_emdb-1.11.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.11
2025-06-02T10:43:53,803   Found link https://files.pythonhosted.org/packages/02/34/c2cff67e72debca8cd69100bbeb0db1aee8dc3c56320976420fcb1b2cd8a/wwpdb_utils_emdb-1.12.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.12
2025-06-02T10:43:53,803   Found link https://files.pythonhosted.org/packages/f6/46/ba491083bb780b932aefb336532363bdf293610d79fc208bbd42daa54717/wwpdb_utils_emdb-1.13.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.13
2025-06-02T10:43:53,804   Found link https://files.pythonhosted.org/packages/5b/07/d849e17c4e1685ad4ea8a811d521c28c1525b6c6fd2e0f5cb896ec873464/wwpdb_utils_emdb-1.13.1.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.13.1
2025-06-02T10:43:53,804   Found link https://files.pythonhosted.org/packages/7d/07/fb02b6c9a73877af437b3066ad31ec078c2294b4c80ea2b6f92c8b8e7e8c/wwpdb_utils_emdb-1.14.tar.gz (from https://pypi.org/simple/wwpdb-utils-emdb/), version: 1.14
2025-06-02T10:43:53,805 Fetching project page and analyzing links: https://www.piwheels.org/simple/wwpdb-utils-emdb/
2025-06-02T10:43:53,806 Getting page https://www.piwheels.org/simple/wwpdb-utils-emdb/
2025-06-02T10:43:53,807 Found index url https://www.piwheels.org/simple/
2025-06-02T10:43:53,962 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/wwpdb-utils-emdb/
2025-06-02T10:43:54,617 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/wwpdb-utils-emdb/
2025-06-02T10:43:55,828 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/wwpdb-utils-emdb/
2025-06-02T10:43:58,047 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/wwpdb-utils-emdb/
2025-06-02T10:44:02,251 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/wwpdb-utils-emdb/
2025-06-02T10:44:02,448 Could not fetch URL https://www.piwheels.org/simple/wwpdb-utils-emdb/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/wwpdb-utils-emdb/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping
2025-06-02T10:44:02,450 Skipping link: not a file: https://www.piwheels.org/simple/wwpdb-utils-emdb/
2025-06-02T10:44:02,451 Skipping link: not a file: https://pypi.org/simple/wwpdb-utils-emdb/
2025-06-02T10:44:02,472 Given no hashes to check 1 links for project 'wwpdb-utils-emdb': discarding no candidates
2025-06-02T10:44:02,474 Collecting wwpdb-utils-emdb==1.14
2025-06-02T10:44:02,476   Created temporary directory: /tmp/pip-unpack-xaaclrty
2025-06-02T10:44:02,702   Downloading wwpdb_utils_emdb-1.14.tar.gz (275 kB)
2025-06-02T10:44:02,968   Added wwpdb-utils-emdb==1.14 from https://files.pythonhosted.org/packages/7d/07/fb02b6c9a73877af437b3066ad31ec078c2294b4c80ea2b6f92c8b8e7e8c/wwpdb_utils_emdb-1.14.tar.gz to build tracker '/tmp/pip-build-tracker-z3oy4bx6'
2025-06-02T10:44:02,970   Running setup.py (path:/tmp/pip-wheel-51n5mt2p/wwpdb-utils-emdb_8c1a091d5bfe42ed9a28d5a913f80642/setup.py) egg_info for package wwpdb-utils-emdb
2025-06-02T10:44:02,971   Created temporary directory: /tmp/pip-pip-egg-info-a85z3ls2
2025-06-02T10:44:02,971   Preparing metadata (setup.py): started
2025-06-02T10:44:02,972   Running command python setup.py egg_info
2025-06-02T10:44:03,499   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite'
2025-06-02T10:44:03,500     warnings.warn(msg)
2025-06-02T10:44:03,500   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
2025-06-02T10:44:03,501     warnings.warn(msg)
2025-06-02T10:44:03,787   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-06-02T10:44:03,788   !!

2025-06-02T10:44:03,789           ********************************************************************************
2025-06-02T10:44:03,789           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-06-02T10:44:03,790           License :: OSI Approved :: Apache Software License

2025-06-02T10:44:03,791           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-06-02T10:44:03,792           ********************************************************************************

2025-06-02T10:44:03,793   !!
2025-06-02T10:44:03,794     self._finalize_license_expression()
2025-06-02T10:44:03,816   running egg_info
2025-06-02T10:44:03,842   creating /tmp/pip-pip-egg-info-a85z3ls2/wwpdb.utils.emdb.egg-info
2025-06-02T10:44:03,843   writing /tmp/pip-pip-egg-info-a85z3ls2/wwpdb.utils.emdb.egg-info/PKG-INFO
2025-06-02T10:44:03,847   writing dependency_links to /tmp/pip-pip-egg-info-a85z3ls2/wwpdb.utils.emdb.egg-info/dependency_links.txt
2025-06-02T10:44:03,849   writing entry points to /tmp/pip-pip-egg-info-a85z3ls2/wwpdb.utils.emdb.egg-info/entry_points.txt
2025-06-02T10:44:03,851   writing requirements to /tmp/pip-pip-egg-info-a85z3ls2/wwpdb.utils.emdb.egg-info/requires.txt
2025-06-02T10:44:03,852   writing top-level names to /tmp/pip-pip-egg-info-a85z3ls2/wwpdb.utils.emdb.egg-info/top_level.txt
2025-06-02T10:44:03,853   writing manifest file '/tmp/pip-pip-egg-info-a85z3ls2/wwpdb.utils.emdb.egg-info/SOURCES.txt'
2025-06-02T10:44:03,974   reading manifest file '/tmp/pip-pip-egg-info-a85z3ls2/wwpdb.utils.emdb.egg-info/SOURCES.txt'
2025-06-02T10:44:03,976   reading manifest template 'MANIFEST.in'
2025-06-02T10:44:03,977   warning: no previously-included files matching '*' found under directory 'wwpdb/utils/emdb/emdb_xml2cif_translator'
2025-06-02T10:44:03,982   writing manifest file '/tmp/pip-pip-egg-info-a85z3ls2/wwpdb.utils.emdb.egg-info/SOURCES.txt'
2025-06-02T10:44:04,087   Preparing metadata (setup.py): finished with status 'done'
2025-06-02T10:44:04,091   Source in /tmp/pip-wheel-51n5mt2p/wwpdb-utils-emdb_8c1a091d5bfe42ed9a28d5a913f80642 has version 1.14, which satisfies requirement wwpdb-utils-emdb==1.14 from https://files.pythonhosted.org/packages/7d/07/fb02b6c9a73877af437b3066ad31ec078c2294b4c80ea2b6f92c8b8e7e8c/wwpdb_utils_emdb-1.14.tar.gz
2025-06-02T10:44:04,092   Removed wwpdb-utils-emdb==1.14 from https://files.pythonhosted.org/packages/7d/07/fb02b6c9a73877af437b3066ad31ec078c2294b4c80ea2b6f92c8b8e7e8c/wwpdb_utils_emdb-1.14.tar.gz from build tracker '/tmp/pip-build-tracker-z3oy4bx6'
2025-06-02T10:44:04,098 Created temporary directory: /tmp/pip-unpack-6j7t0b8w
2025-06-02T10:44:04,099 Created temporary directory: /tmp/pip-unpack-trxsm5v3
2025-06-02T10:44:04,099 Building wheels for collected packages: wwpdb-utils-emdb
2025-06-02T10:44:04,103   Created temporary directory: /tmp/pip-wheel-jvi2zho6
2025-06-02T10:44:04,104   DEPRECATION: Building 'wwpdb-utils-emdb' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'wwpdb-utils-emdb'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-06-02T10:44:04,105   Building wheel for wwpdb-utils-emdb (setup.py): started
2025-06-02T10:44:04,106   Destination directory: /tmp/pip-wheel-jvi2zho6
2025-06-02T10:44:04,106   Running command python setup.py bdist_wheel
2025-06-02T10:44:04,631   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite'
2025-06-02T10:44:04,632     warnings.warn(msg)
2025-06-02T10:44:04,632   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
2025-06-02T10:44:04,633     warnings.warn(msg)
2025-06-02T10:44:04,925   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-06-02T10:44:04,925   !!

2025-06-02T10:44:04,926           ********************************************************************************
2025-06-02T10:44:04,927           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-06-02T10:44:04,928           License :: OSI Approved :: Apache Software License

2025-06-02T10:44:04,929           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-06-02T10:44:04,930           ********************************************************************************

2025-06-02T10:44:04,931   !!
2025-06-02T10:44:04,932     self._finalize_license_expression()
2025-06-02T10:44:04,932   running bdist_wheel
2025-06-02T10:44:05,008   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:135: SetuptoolsDeprecationWarning: bdist_wheel.universal is deprecated
2025-06-02T10:44:05,008   !!

2025-06-02T10:44:05,010           ********************************************************************************
2025-06-02T10:44:05,010           With Python 2.7 end-of-life, support for building universal wheels
2025-06-02T10:44:05,011           (i.e., wheels that support both Python 2 and Python 3)
2025-06-02T10:44:05,012           is being obviated.
2025-06-02T10:44:05,012           Please discontinue using this option, or if you still need it,
2025-06-02T10:44:05,013           file an issue with pypa/setuptools describing your use case.

2025-06-02T10:44:05,014           By 2025-Aug-30, you need to update your project and remove deprecated calls
2025-06-02T10:44:05,014           or your builds will no longer be supported.
2025-06-02T10:44:05,015           ********************************************************************************

2025-06-02T10:44:05,016   !!
2025-06-02T10:44:05,016     self.finalize_options()
2025-06-02T10:44:05,064   running build
2025-06-02T10:44:05,065   running build_py
2025-06-02T10:44:05,095   creating build/lib/wwpdb
2025-06-02T10:44:05,097   copying wwpdb/__init__.py -> build/lib/wwpdb
2025-06-02T10:44:05,100   creating build/lib/wwpdb/utils
2025-06-02T10:44:05,101   copying wwpdb/utils/__init__.py -> build/lib/wwpdb/utils
2025-06-02T10:44:05,103   creating build/lib/wwpdb/utils/emdb
2025-06-02T10:44:05,104   copying wwpdb/utils/emdb/EmdbSchema.py -> build/lib/wwpdb/utils/emdb
2025-06-02T10:44:05,106   copying wwpdb/utils/emdb/__init__.py -> build/lib/wwpdb/utils/emdb
2025-06-02T10:44:05,108   creating build/lib/wwpdb/utils/emdb/cif_emdb_translator
2025-06-02T10:44:05,109   copying wwpdb/utils/emdb/cif_emdb_translator/test_cif_to_xml_translator.py -> build/lib/wwpdb/utils/emdb/cif_emdb_translator
2025-06-02T10:44:05,111   copying wwpdb/utils/emdb/cif_emdb_translator/simple_test.py -> build/lib/wwpdb/utils/emdb/cif_emdb_translator
2025-06-02T10:44:05,113   copying wwpdb/utils/emdb/cif_emdb_translator/cif_emdb_translator.py -> build/lib/wwpdb/utils/emdb/cif_emdb_translator
2025-06-02T10:44:05,127   copying wwpdb/utils/emdb/cif_emdb_translator/emdb.py -> build/lib/wwpdb/utils/emdb/cif_emdb_translator
2025-06-02T10:44:05,162   copying wwpdb/utils/emdb/cif_emdb_translator/__init__.py -> build/lib/wwpdb/utils/emdb/cif_emdb_translator
2025-06-02T10:44:05,164   creating build/lib/wwpdb/utils/emdb/checkemupload
2025-06-02T10:44:05,165   copying wwpdb/utils/emdb/checkemupload/checkemupload.py -> build/lib/wwpdb/utils/emdb/checkemupload
2025-06-02T10:44:05,168   copying wwpdb/utils/emdb/checkemupload/__init__.py -> build/lib/wwpdb/utils/emdb/checkemupload
2025-06-02T10:44:05,170   creating build/lib/wwpdb/utils/emdb/atomcheck
2025-06-02T10:44:05,171   copying wwpdb/utils/emdb/atomcheck/atomcheck.py -> build/lib/wwpdb/utils/emdb/atomcheck
2025-06-02T10:44:05,173   copying wwpdb/utils/emdb/atomcheck/__init__.py -> build/lib/wwpdb/utils/emdb/atomcheck
2025-06-02T10:44:05,174   running egg_info
2025-06-02T10:44:05,200   writing wwpdb.utils.emdb.egg-info/PKG-INFO
2025-06-02T10:44:05,204   writing dependency_links to wwpdb.utils.emdb.egg-info/dependency_links.txt
2025-06-02T10:44:05,206   writing entry points to wwpdb.utils.emdb.egg-info/entry_points.txt
2025-06-02T10:44:05,207   writing requirements to wwpdb.utils.emdb.egg-info/requires.txt
2025-06-02T10:44:05,208   writing top-level names to wwpdb.utils.emdb.egg-info/top_level.txt
2025-06-02T10:44:05,248   reading manifest file 'wwpdb.utils.emdb.egg-info/SOURCES.txt'
2025-06-02T10:44:05,252   reading manifest template 'MANIFEST.in'
2025-06-02T10:44:05,253   warning: no previously-included files matching '*' found under directory 'wwpdb/utils/emdb/emdb_xml2cif_translator'
2025-06-02T10:44:05,258   writing manifest file 'wwpdb.utils.emdb.egg-info/SOURCES.txt'
2025-06-02T10:44:05,260   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'wwpdb.utils.emdb.data' is absent from the `packages` configuration.
2025-06-02T10:44:05,261   !!

2025-06-02T10:44:05,262           ********************************************************************************
2025-06-02T10:44:05,262           ############################
2025-06-02T10:44:05,263           # Package would be ignored #
2025-06-02T10:44:05,263           ############################
2025-06-02T10:44:05,264           Python recognizes 'wwpdb.utils.emdb.data' as an importable package[^1],
2025-06-02T10:44:05,264           but it is absent from setuptools' `packages` configuration.

2025-06-02T10:44:05,265           This leads to an ambiguous overall configuration. If you want to distribute this
2025-06-02T10:44:05,266           package, please make sure that 'wwpdb.utils.emdb.data' is explicitly added
2025-06-02T10:44:05,266           to the `packages` configuration field.

2025-06-02T10:44:05,267           Alternatively, you can also rely on setuptools' discovery methods
2025-06-02T10:44:05,268           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-06-02T10:44:05,268           instead of `find_packages(...)`/`find:`).

2025-06-02T10:44:05,270           You can read more about "package discovery" on setuptools documentation page:

2025-06-02T10:44:05,271           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-06-02T10:44:05,272           If you don't want 'wwpdb.utils.emdb.data' to be distributed and are
2025-06-02T10:44:05,272           already explicitly excluding 'wwpdb.utils.emdb.data' via
2025-06-02T10:44:05,273           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-06-02T10:44:05,273           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-06-02T10:44:05,274           combination with a more fine grained `package-data` configuration.

2025-06-02T10:44:05,275           You can read more about "package data files" on setuptools documentation page:

2025-06-02T10:44:05,276           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-06-02T10:44:05,278           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-06-02T10:44:05,279                 even if it does not contain any `.py` files.
2025-06-02T10:44:05,280                 On the other hand, currently there is no concept of package data
2025-06-02T10:44:05,280                 directory, all directories are treated like packages.
2025-06-02T10:44:05,281           ********************************************************************************

2025-06-02T10:44:05,282   !!
2025-06-02T10:44:05,283     check.warn(importable)
2025-06-02T10:44:05,284   creating build/lib/wwpdb/utils/emdb/data
2025-06-02T10:44:05,284   copying wwpdb/utils/emdb/data/emdb-v3.xsd -> build/lib/wwpdb/utils/emdb/data
2025-06-02T10:44:05,285   copying wwpdb/utils/emdb/cif_emdb_translator/README.md -> build/lib/wwpdb/utils/emdb/cif_emdb_translator
2025-06-02T10:44:05,311   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-06-02T10:44:05,312   !!

2025-06-02T10:44:05,312           ********************************************************************************
2025-06-02T10:44:05,313           Please avoid running ``setup.py`` directly.
2025-06-02T10:44:05,313           Instead, use pypa/build, pypa/installer or other
2025-06-02T10:44:05,314           standards-based tools.

2025-06-02T10:44:05,315           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-06-02T10:44:05,315           or your builds will no longer be supported.

2025-06-02T10:44:05,316           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-06-02T10:44:05,317           ********************************************************************************

2025-06-02T10:44:05,318   !!
2025-06-02T10:44:05,319     self.initialize_options()
2025-06-02T10:44:05,339   installing to build/bdist.linux-armv7l/wheel
2025-06-02T10:44:05,340   running install
2025-06-02T10:44:05,364   running install_lib
2025-06-02T10:44:05,391   creating build/bdist.linux-armv7l/wheel
2025-06-02T10:44:05,393   creating build/bdist.linux-armv7l/wheel/wwpdb
2025-06-02T10:44:05,394   creating build/bdist.linux-armv7l/wheel/wwpdb/utils
2025-06-02T10:44:05,396   creating build/bdist.linux-armv7l/wheel/wwpdb/utils/emdb
2025-06-02T10:44:05,398   creating build/bdist.linux-armv7l/wheel/wwpdb/utils/emdb/data
2025-06-02T10:44:05,399   copying build/lib/wwpdb/utils/emdb/data/emdb-v3.xsd -> build/bdist.linux-armv7l/wheel/./wwpdb/utils/emdb/data
2025-06-02T10:44:05,406   creating build/bdist.linux-armv7l/wheel/wwpdb/utils/emdb/cif_emdb_translator
2025-06-02T10:44:05,407   copying build/lib/wwpdb/utils/emdb/cif_emdb_translator/test_cif_to_xml_translator.py -> build/bdist.linux-armv7l/wheel/./wwpdb/utils/emdb/cif_emdb_translator
2025-06-02T10:44:05,409   copying build/lib/wwpdb/utils/emdb/cif_emdb_translator/simple_test.py -> build/bdist.linux-armv7l/wheel/./wwpdb/utils/emdb/cif_emdb_translator
2025-06-02T10:44:05,411   copying build/lib/wwpdb/utils/emdb/cif_emdb_translator/cif_emdb_translator.py -> build/bdist.linux-armv7l/wheel/./wwpdb/utils/emdb/cif_emdb_translator
2025-06-02T10:44:05,423   copying build/lib/wwpdb/utils/emdb/cif_emdb_translator/README.md -> build/bdist.linux-armv7l/wheel/./wwpdb/utils/emdb/cif_emdb_translator
2025-06-02T10:44:05,425   copying build/lib/wwpdb/utils/emdb/cif_emdb_translator/emdb.py -> build/bdist.linux-armv7l/wheel/./wwpdb/utils/emdb/cif_emdb_translator
2025-06-02T10:44:05,473   copying build/lib/wwpdb/utils/emdb/cif_emdb_translator/__init__.py -> build/bdist.linux-armv7l/wheel/./wwpdb/utils/emdb/cif_emdb_translator
2025-06-02T10:44:05,475   creating build/bdist.linux-armv7l/wheel/wwpdb/utils/emdb/checkemupload
2025-06-02T10:44:05,476   copying build/lib/wwpdb/utils/emdb/checkemupload/checkemupload.py -> build/bdist.linux-armv7l/wheel/./wwpdb/utils/emdb/checkemupload
2025-06-02T10:44:05,480   copying build/lib/wwpdb/utils/emdb/checkemupload/__init__.py -> build/bdist.linux-armv7l/wheel/./wwpdb/utils/emdb/checkemupload
2025-06-02T10:44:05,482   creating build/bdist.linux-armv7l/wheel/wwpdb/utils/emdb/atomcheck
2025-06-02T10:44:05,483   copying build/lib/wwpdb/utils/emdb/atomcheck/atomcheck.py -> build/bdist.linux-armv7l/wheel/./wwpdb/utils/emdb/atomcheck
2025-06-02T10:44:05,486   copying build/lib/wwpdb/utils/emdb/atomcheck/__init__.py -> build/bdist.linux-armv7l/wheel/./wwpdb/utils/emdb/atomcheck
2025-06-02T10:44:05,488   copying build/lib/wwpdb/utils/emdb/EmdbSchema.py -> build/bdist.linux-armv7l/wheel/./wwpdb/utils/emdb
2025-06-02T10:44:05,490   copying build/lib/wwpdb/utils/emdb/__init__.py -> build/bdist.linux-armv7l/wheel/./wwpdb/utils/emdb
2025-06-02T10:44:05,492   copying build/lib/wwpdb/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./wwpdb/utils
2025-06-02T10:44:05,494   copying build/lib/wwpdb/__init__.py -> build/bdist.linux-armv7l/wheel/./wwpdb
2025-06-02T10:44:05,495   running install_egg_info
2025-06-02T10:44:05,529   Copying wwpdb.utils.emdb.egg-info to build/bdist.linux-armv7l/wheel/./wwpdb.utils.emdb-1.14-py3.11.egg-info
2025-06-02T10:44:05,541   running install_scripts
2025-06-02T10:44:05,552   creating build/bdist.linux-armv7l/wheel/wwpdb_utils_emdb-1.14.dist-info/WHEEL
2025-06-02T10:44:05,555   creating '/tmp/pip-wheel-jvi2zho6/wwpdb_utils_emdb-1.14-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-06-02T10:44:05,557   adding 'wwpdb/__init__.py'
2025-06-02T10:44:05,560   adding 'wwpdb/utils/__init__.py'
2025-06-02T10:44:05,562   adding 'wwpdb/utils/emdb/EmdbSchema.py'
2025-06-02T10:44:05,564   adding 'wwpdb/utils/emdb/__init__.py'
2025-06-02T10:44:05,566   adding 'wwpdb/utils/emdb/atomcheck/__init__.py'
2025-06-02T10:44:05,568   adding 'wwpdb/utils/emdb/atomcheck/atomcheck.py'
2025-06-02T10:44:05,570   adding 'wwpdb/utils/emdb/checkemupload/__init__.py'
2025-06-02T10:44:05,575   adding 'wwpdb/utils/emdb/checkemupload/checkemupload.py'
2025-06-02T10:44:05,578   adding 'wwpdb/utils/emdb/cif_emdb_translator/README.md'
2025-06-02T10:44:05,579   adding 'wwpdb/utils/emdb/cif_emdb_translator/__init__.py'
2025-06-02T10:44:05,628   adding 'wwpdb/utils/emdb/cif_emdb_translator/cif_emdb_translator.py'
2025-06-02T10:44:05,745   adding 'wwpdb/utils/emdb/cif_emdb_translator/emdb.py'
2025-06-02T10:44:05,761   adding 'wwpdb/utils/emdb/cif_emdb_translator/simple_test.py'
2025-06-02T10:44:05,763   adding 'wwpdb/utils/emdb/cif_emdb_translator/test_cif_to_xml_translator.py'
2025-06-02T10:44:05,776   adding 'wwpdb/utils/emdb/data/emdb-v3.xsd'
2025-06-02T10:44:05,780   adding 'wwpdb_utils_emdb-1.14.dist-info/METADATA'
2025-06-02T10:44:05,781   adding 'wwpdb_utils_emdb-1.14.dist-info/WHEEL'
2025-06-02T10:44:05,783   adding 'wwpdb_utils_emdb-1.14.dist-info/entry_points.txt'
2025-06-02T10:44:05,784   adding 'wwpdb_utils_emdb-1.14.dist-info/top_level.txt'
2025-06-02T10:44:05,785   adding 'wwpdb_utils_emdb-1.14.dist-info/RECORD'
2025-06-02T10:44:05,791   removing build/bdist.linux-armv7l/wheel
2025-06-02T10:44:05,907   Building wheel for wwpdb-utils-emdb (setup.py): finished with status 'done'
2025-06-02T10:44:05,912   Created wheel for wwpdb-utils-emdb: filename=wwpdb_utils_emdb-1.14-py2.py3-none-any.whl size=283061 sha256=687728c23bce1b756cd4e5952e35dcfef384162ef04e9c189f9fea649f6e1d9b
2025-06-02T10:44:05,913   Stored in directory: /tmp/pip-ephem-wheel-cache-wc1gt_s1/wheels/43/f7/86/6f59e1d53937792227f5f6c196486cde1b3b0589f96b8632a8
2025-06-02T10:44:05,923 Successfully built wwpdb-utils-emdb
2025-06-02T10:44:05,937 Removed build tracker: '/tmp/pip-build-tracker-z3oy4bx6'