2025-06-03T02:08:51,238 Created temporary directory: /tmp/pip-build-tracker-f5sn_pwj 2025-06-03T02:08:51,239 Initialized build tracking at /tmp/pip-build-tracker-f5sn_pwj 2025-06-03T02:08:51,240 Created build tracker: /tmp/pip-build-tracker-f5sn_pwj 2025-06-03T02:08:51,241 Entered build tracker: /tmp/pip-build-tracker-f5sn_pwj 2025-06-03T02:08:51,242 Created temporary directory: /tmp/pip-wheel-cb7uk9oj 2025-06-03T02:08:51,246 Created temporary directory: /tmp/pip-ephem-wheel-cache-m1g1qz4q 2025-06-03T02:08:51,299 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-06-03T02:08:51,301 2 location(s) to search for versions of ndex2: 2025-06-03T02:08:51,301 * https://pypi.org/simple/ndex2/ 2025-06-03T02:08:51,301 * https://www.piwheels.org/simple/ndex2/ 2025-06-03T02:08:51,302 Fetching project page and analyzing links: https://pypi.org/simple/ndex2/ 2025-06-03T02:08:51,303 Getting page https://pypi.org/simple/ndex2/ 2025-06-03T02:08:51,304 Found index url 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https://files.pythonhosted.org/packages/bf/26/eeaac8dab0432eaee6579bee6d8af2710131df7d20de93d188894bf646c6/ndex2-1.2.0.55.tar.gz (from https://pypi.org/simple/ndex2/), version: 1.2.0.55 2025-06-03T02:08:51,487 Skipping link: No binaries permitted for ndex2: https://files.pythonhosted.org/packages/9e/cc/6aedda15c4e9325fe17272e37dd4b239a6d8d04538cc3ad9d9e0aa14f13d/ndex2-1.2.0.56-py2-none-any.whl (from https://pypi.org/simple/ndex2/) 2025-06-03T02:08:51,488 Found link https://files.pythonhosted.org/packages/1f/2c/ef22260e4a3635c68b46a7b01b319290ccc807bc1cd0b6503a236b6e347e/ndex2-1.2.0.56.tar.gz (from https://pypi.org/simple/ndex2/), version: 1.2.0.56 2025-06-03T02:08:51,488 Skipping link: No binaries permitted for ndex2: https://files.pythonhosted.org/packages/fc/e7/b225bd29a58df285fed2be4f0c816a86a21ca67c016cd7804c62bb001f1d/ndex2-1.2.0.58-py2-none-any.whl (from https://pypi.org/simple/ndex2/) 2025-06-03T02:08:51,489 Found link 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https://files.pythonhosted.org/packages/58/cb/75e1c0e92766a03c5119a60c50a57391a01361c3abe1fde6d686a054ef2f/ndex2-2.0.1rc4.tar.gz (from https://pypi.org/simple/ndex2/), version: 2.0.1rc4 2025-06-03T02:08:51,499 Skipping link: No binaries permitted for ndex2: https://files.pythonhosted.org/packages/dc/0d/d67d819bacdedc79b79f40a07c3191c821f1c7d6ce2ff2c9e7af58c6a0aa/ndex2-2.0.1-py2.py3-none-any.whl (from https://pypi.org/simple/ndex2/) 2025-06-03T02:08:51,500 Found link https://files.pythonhosted.org/packages/03/71/b4578fc96231e795c8fc290de4c307fa0369057aa3037fc9a2383a10e90a/ndex2-2.0.1.tar.gz (from https://pypi.org/simple/ndex2/), version: 2.0.1 2025-06-03T02:08:51,500 Skipping link: No binaries permitted for ndex2: https://files.pythonhosted.org/packages/21/1f/ce4f8abea6329e9162619c5d25e2118b2ceb637760851ec8d1a28fa3c619/ndex2-3.0.0a1-py2.py3-none-any.whl (from https://pypi.org/simple/ndex2/) 2025-06-03T02:08:51,501 Found link 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https://files.pythonhosted.org/packages/06/7c/d7cba40395ed2a2b6266c09dda6838d58e3162b34648421de6bd3321fc74/ndex2-3.2.0.tar.gz (from https://pypi.org/simple/ndex2/), version: 3.2.0 2025-06-03T02:08:51,506 Skipping link: No binaries permitted for ndex2: https://files.pythonhosted.org/packages/3e/3b/d03e01e90afbb6010c6dc0f997dc716ab2a407150fe1230d827412d4c35a/ndex2-3.3.0-py2.py3-none-any.whl (from https://pypi.org/simple/ndex2/) 2025-06-03T02:08:51,507 Found link https://files.pythonhosted.org/packages/ae/08/144a6ab1aa7004220e136c0755661b8e59e5889917361db40df2ad57cbb0/ndex2-3.3.0.tar.gz (from https://pypi.org/simple/ndex2/), version: 3.3.0 2025-06-03T02:08:51,508 Skipping link: No binaries permitted for ndex2: https://files.pythonhosted.org/packages/55/8d/7e951c37d0950b4da8ba857d941e89476acba5c3c14978c774e3f92b5b50/ndex2-3.3.1-py2.py3-none-any.whl (from https://pypi.org/simple/ndex2/) 2025-06-03T02:08:51,509 Found link https://files.pythonhosted.org/packages/72/b2/ebb4c162736fb5c7b77016cf3fb14a97c29af7154ed47f477ff997a815be/ndex2-3.3.1.tar.gz (from https://pypi.org/simple/ndex2/), version: 3.3.1 2025-06-03T02:08:51,509 Skipping link: No binaries permitted for ndex2: https://files.pythonhosted.org/packages/13/a6/ec6db3b92fd87bfa729628f5921e0271eb35e336c2fd06a8c49bbc4984cd/ndex2-3.3.2-py2.py3-none-any.whl (from https://pypi.org/simple/ndex2/) 2025-06-03T02:08:51,510 Found link https://files.pythonhosted.org/packages/ee/98/6dd7bf021b2914de1b3a67e2eea3419ccfdd843f3ee4fe6fd30ca5b2898f/ndex2-3.3.2.tar.gz (from https://pypi.org/simple/ndex2/), version: 3.3.2 2025-06-03T02:08:51,510 Skipping link: No binaries permitted for ndex2: https://files.pythonhosted.org/packages/44/29/953689fd6183c2b2cbfc695f4568f9f33932ef2ce6b9155b62e7bca26af0/ndex2-3.3.3-py2.py3-none-any.whl (from https://pypi.org/simple/ndex2/) 2025-06-03T02:08:51,510 Found link https://files.pythonhosted.org/packages/48/31/a8f6f5bbfe6e6db495ede7059d6133b7c6f5e2bdd8e248faf1bf9f52ff8e/ndex2-3.3.3.tar.gz (from https://pypi.org/simple/ndex2/), version: 3.3.3 2025-06-03T02:08:51,511 Skipping link: No binaries permitted for ndex2: https://files.pythonhosted.org/packages/82/9b/384ad8acd0782ddcf8a57e3bcecbfbb50c5bd72b1e0a1d7ab843ac3525bc/ndex2-3.4.0a1-py2.py3-none-any.whl (from https://pypi.org/simple/ndex2/) 2025-06-03T02:08:51,512 Found link https://files.pythonhosted.org/packages/64/99/89a97bd072cb904582bfe4f28da4afc2738187aed7a6095702efa6d75fc2/ndex2-3.4.0a1.tar.gz (from https://pypi.org/simple/ndex2/), version: 3.4.0a1 2025-06-03T02:08:51,512 Skipping link: No binaries permitted for ndex2: https://files.pythonhosted.org/packages/ee/f9/ea16d9cd361e7613e9a8e1823a29ff17029649227adb5515de3ee512e561/ndex2-3.4.0-py2.py3-none-any.whl (from https://pypi.org/simple/ndex2/) 2025-06-03T02:08:51,513 Found link https://files.pythonhosted.org/packages/24/cb/e02ab585fc4e6c23ed9910017aa001eb8c004b4e9e6bac483490b86c0c84/ndex2-3.4.0.tar.gz (from https://pypi.org/simple/ndex2/), version: 3.4.0 2025-06-03T02:08:51,514 Skipping link: No binaries permitted for ndex2: https://files.pythonhosted.org/packages/6f/14/ea2693a3f1b40c27fc286c2f1af71cc5207e89d2267bee3255c6ceed2af9/ndex2-3.5.0a3-py2.py3-none-any.whl (from https://pypi.org/simple/ndex2/) 2025-06-03T02:08:51,514 Found link https://files.pythonhosted.org/packages/7b/37/4d04ee9e9dda68258ec72d52a518cd36f9020ec2c343bf506bf34b4f97d4/ndex2-3.5.0a3.tar.gz (from https://pypi.org/simple/ndex2/), version: 3.5.0a3 2025-06-03T02:08:51,515 Skipping link: No binaries permitted for ndex2: https://files.pythonhosted.org/packages/fd/81/80fb03f60b6f6a52304231bfdf05226b2a3ea1342061cb9d877c41efec25/ndex2-3.5.0-py2.py3-none-any.whl (from https://pypi.org/simple/ndex2/) 2025-06-03T02:08:51,516 Found link https://files.pythonhosted.org/packages/47/60/7e7d4e90d4b79fa20ac3b661decbf7f985bd5dc649bde2a943fc0097234f/ndex2-3.5.0.tar.gz (from https://pypi.org/simple/ndex2/), version: 3.5.0 2025-06-03T02:08:51,516 Skipping link: No binaries permitted for ndex2: https://files.pythonhosted.org/packages/5f/6a/1f1ce614bf9abb06ef411c443662cd8841714a201e6b63b13f9d7de83615/ndex2-3.5.1a1-py2.py3-none-any.whl (from https://pypi.org/simple/ndex2/) 2025-06-03T02:08:51,517 Found link https://files.pythonhosted.org/packages/03/ff/43ad27b14890fb5c263d3a3ab912bbe97fcc0058accb375d62a8f5c02e42/ndex2-3.5.1a1.tar.gz (from https://pypi.org/simple/ndex2/), version: 3.5.1a1 2025-06-03T02:08:51,518 Skipping link: No binaries permitted for ndex2: https://files.pythonhosted.org/packages/51/4d/007c39d33a81a1322ede53b4a14735e75a9c1a8b28f953469ed6169ab585/ndex2-3.5.1-py2.py3-none-any.whl (from https://pypi.org/simple/ndex2/) 2025-06-03T02:08:51,518 Found link https://files.pythonhosted.org/packages/ba/ac/11d7532ed5d94b94c2d290aefd0cb40509eeb21b6df9db2fd66c13f34dd5/ndex2-3.5.1.tar.gz (from https://pypi.org/simple/ndex2/), version: 3.5.1 2025-06-03T02:08:51,519 Skipping link: No binaries permitted for ndex2: https://files.pythonhosted.org/packages/15/cd/d1b681e7943d0578bfd7179e2653b930bc431847022fa9d631e3fac361ad/ndex2-3.6.0a1-py2.py3-none-any.whl (from https://pypi.org/simple/ndex2/) 2025-06-03T02:08:51,519 Found link https://files.pythonhosted.org/packages/e7/cd/b6e173c55775fecf3aebc8840357cee70c767e406ebfeb22e61bfb9d72d6/ndex2-3.6.0a1.tar.gz (from https://pypi.org/simple/ndex2/), version: 3.6.0a1 2025-06-03T02:08:51,520 Skipping link: No binaries permitted for ndex2: https://files.pythonhosted.org/packages/14/f8/f14cfe2a3f50a43235f96258cff52f37c1d3fda8e23658e70b09e7128109/ndex2-3.6.0-py2.py3-none-any.whl (from https://pypi.org/simple/ndex2/) 2025-06-03T02:08:51,520 Found link https://files.pythonhosted.org/packages/91/2c/3d5a468f5355eabc2290d7ace93bcbbf73dbdc8adc95cce41177438bf958/ndex2-3.6.0.tar.gz (from https://pypi.org/simple/ndex2/), version: 3.6.0 2025-06-03T02:08:51,521 Skipping link: No binaries permitted for ndex2: https://files.pythonhosted.org/packages/80/50/a93003ff9cae5c0aa1547575e7fe9070506824557f60971f07588e47b76f/ndex2-3.7.0a1-py2.py3-none-any.whl (from https://pypi.org/simple/ndex2/) 2025-06-03T02:08:51,521 Found link https://files.pythonhosted.org/packages/22/6c/eef94caabf306b4068c54a346ef7b2c079126561d8d479aa082f73c18df1/ndex2-3.7.0a1.tar.gz (from https://pypi.org/simple/ndex2/), version: 3.7.0a1 2025-06-03T02:08:51,522 Skipping link: No binaries permitted for ndex2: https://files.pythonhosted.org/packages/06/f2/09277d41058bca3f28f1603138541a07b30adb68bc02b8d752228a2087fe/ndex2-3.7.0-py2.py3-none-any.whl (from https://pypi.org/simple/ndex2/) 2025-06-03T02:08:51,523 Found link https://files.pythonhosted.org/packages/43/43/34936654a8eaa0a658505a633c2d3598c986b11764b87f95808fa6e0ab93/ndex2-3.7.0.tar.gz (from https://pypi.org/simple/ndex2/), version: 3.7.0 2025-06-03T02:08:51,523 Skipping link: No binaries permitted for ndex2: https://files.pythonhosted.org/packages/3c/14/3b7fd16346247a5d375ace7bf5c916e5b842b43678f7b29fb99ba14f611e/ndex2-3.8.0-py2.py3-none-any.whl (from https://pypi.org/simple/ndex2/) 2025-06-03T02:08:51,524 Found link https://files.pythonhosted.org/packages/cd/85/2aaa664ce0a22a5ee892da7bcd14d3ac74d496139da69ef96cab2471b805/ndex2-3.8.0.tar.gz (from https://pypi.org/simple/ndex2/), version: 3.8.0 2025-06-03T02:08:51,525 Skipping link: No binaries permitted for ndex2: https://files.pythonhosted.org/packages/c5/e7/e653b302a18638b8dbcb7e4f2579596f82b3b57baef081f842849c4b5742/ndex2-3.9.0-py2.py3-none-any.whl (from https://pypi.org/simple/ndex2/) 2025-06-03T02:08:51,526 Found link https://files.pythonhosted.org/packages/1d/bd/63d2d45d02d01d1bfebeca32eb6dcde201984f273aa50cb79250976b5f65/ndex2-3.9.0.tar.gz (from https://pypi.org/simple/ndex2/), version: 3.9.0 2025-06-03T02:08:51,526 Skipping link: No binaries permitted for ndex2: https://files.pythonhosted.org/packages/b6/e0/26728312f3561e474b234e09205905459825c7156b2596f0a0adb15ed5e8/ndex2-3.10.0a1-py2.py3-none-any.whl (from https://pypi.org/simple/ndex2/) 2025-06-03T02:08:51,527 Found link https://files.pythonhosted.org/packages/f8/b7/126a23df413c6c1597d04217be22bfbde381eb4ae9e2104ea84f060a9b15/ndex2-3.10.0a1.tar.gz (from https://pypi.org/simple/ndex2/), version: 3.10.0a1 2025-06-03T02:08:51,527 Skipping link: No binaries permitted for ndex2: https://files.pythonhosted.org/packages/76/27/7654997bd8b6ec0650ee2c4df26ca2e718e3fa44b25e28661bdab3b396a3/ndex2-3.10.0-py2.py3-none-any.whl (from https://pypi.org/simple/ndex2/) 2025-06-03T02:08:51,528 Found link https://files.pythonhosted.org/packages/ef/79/d82b8e499d0d8ba01537d4672f9b90ad78d2f6a4ef7df7692d4c9a863cac/ndex2-3.10.0.tar.gz (from https://pypi.org/simple/ndex2/), version: 3.10.0 2025-06-03T02:08:51,529 Skipping link: No binaries permitted for ndex2: https://files.pythonhosted.org/packages/65/75/ef2af8e4dcb1b3fc6f597e1af8ab11c83c8d32ee3e8ce374a85b3e8076c8/ndex2-3.11.0a1-py2.py3-none-any.whl (from https://pypi.org/simple/ndex2/) 2025-06-03T02:08:51,530 Found link https://files.pythonhosted.org/packages/95/f3/dd07c7d0d63e5ada1363ed1e0c60f382e775dbc9f81ec889ea80cc662293/ndex2-3.11.0a1.tar.gz (from https://pypi.org/simple/ndex2/), version: 3.11.0a1 2025-06-03T02:08:51,530 Skipping link: No binaries permitted for ndex2: https://files.pythonhosted.org/packages/1b/cb/091207dc0927363e48b2f92f79a8d8551a237842f535a8141ec533a16068/ndex2-3.11.0-py2.py3-none-any.whl (from https://pypi.org/simple/ndex2/) 2025-06-03T02:08:51,531 Found link https://files.pythonhosted.org/packages/2d/e8/67d1ee6839980a56a2b0b10a1e2a30e701f133ddbecf7d50ccd6bd76b943/ndex2-3.11.0.tar.gz (from https://pypi.org/simple/ndex2/), version: 3.11.0 2025-06-03T02:08:51,531 Fetching project page and analyzing links: https://www.piwheels.org/simple/ndex2/ 2025-06-03T02:08:51,532 Getting page https://www.piwheels.org/simple/ndex2/ 2025-06-03T02:08:51,533 Found index url https://www.piwheels.org/simple/ 2025-06-03T02:08:51,686 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/ndex2/ 2025-06-03T02:08:52,344 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/ndex2/ 2025-06-03T02:08:53,518 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/ndex2/ 2025-06-03T02:08:55,735 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/ndex2/ 2025-06-03T02:08:59,955 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/ndex2/ 2025-06-03T02:09:00,143 Could not fetch URL https://www.piwheels.org/simple/ndex2/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/ndex2/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping 2025-06-03T02:09:00,144 Skipping link: not a file: https://www.piwheels.org/simple/ndex2/ 2025-06-03T02:09:00,145 Skipping link: not a file: https://pypi.org/simple/ndex2/ 2025-06-03T02:09:00,168 Given no hashes to check 1 links for project 'ndex2': discarding no candidates 2025-06-03T02:09:00,170 Collecting ndex2==3.11.0a1 2025-06-03T02:09:00,173 Created temporary directory: /tmp/pip-unpack-knf0kok4 2025-06-03T02:09:00,397 Downloading ndex2-3.11.0a1.tar.gz (236 kB) 2025-06-03T02:09:00,679 Added ndex2==3.11.0a1 from https://files.pythonhosted.org/packages/95/f3/dd07c7d0d63e5ada1363ed1e0c60f382e775dbc9f81ec889ea80cc662293/ndex2-3.11.0a1.tar.gz to build tracker '/tmp/pip-build-tracker-f5sn_pwj' 2025-06-03T02:09:00,681 Running setup.py (path:/tmp/pip-wheel-cb7uk9oj/ndex2_3c3a30a6227645b79e138b9a9b33a4e9/setup.py) egg_info for package ndex2 2025-06-03T02:09:00,682 Created temporary directory: /tmp/pip-pip-egg-info-7drhjhx0 2025-06-03T02:09:00,683 Preparing metadata (setup.py): started 2025-06-03T02:09:00,684 Running command python setup.py egg_info 2025-06-03T02:09:01,550 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-06-03T02:09:01,551 !! 2025-06-03T02:09:01,552 ******************************************************************************** 2025-06-03T02:09:01,552 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-06-03T02:09:01,553 License :: OSI Approved :: BSD License 2025-06-03T02:09:01,554 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-03T02:09:01,554 ******************************************************************************** 2025-06-03T02:09:01,555 !! 2025-06-03T02:09:01,556 self._finalize_license_expression() 2025-06-03T02:09:01,581 running egg_info 2025-06-03T02:09:01,608 creating /tmp/pip-pip-egg-info-7drhjhx0/ndex2.egg-info 2025-06-03T02:09:01,610 writing /tmp/pip-pip-egg-info-7drhjhx0/ndex2.egg-info/PKG-INFO 2025-06-03T02:09:01,614 writing dependency_links to /tmp/pip-pip-egg-info-7drhjhx0/ndex2.egg-info/dependency_links.txt 2025-06-03T02:09:01,617 writing requirements to /tmp/pip-pip-egg-info-7drhjhx0/ndex2.egg-info/requires.txt 2025-06-03T02:09:01,618 writing top-level names to /tmp/pip-pip-egg-info-7drhjhx0/ndex2.egg-info/top_level.txt 2025-06-03T02:09:01,620 writing manifest file '/tmp/pip-pip-egg-info-7drhjhx0/ndex2.egg-info/SOURCES.txt' 2025-06-03T02:09:01,707 reading manifest file '/tmp/pip-pip-egg-info-7drhjhx0/ndex2.egg-info/SOURCES.txt' 2025-06-03T02:09:01,709 reading manifest template 'MANIFEST.in' 2025-06-03T02:09:01,725 warning: no previously-included files matching '__pycache__' found under directory '*' 2025-06-03T02:09:01,726 warning: no previously-included files matching '*.py[co]' found under directory '*' 2025-06-03T02:09:01,754 warning: no files found matching 'make.bat' under directory 'docs' 2025-06-03T02:09:01,763 warning: no files found matching '*.jpg' under directory 'docs' 2025-06-03T02:09:01,781 warning: no files found matching '*.gif' under directory 'docs' 2025-06-03T02:09:01,781 adding license file 'LICENSE.txt' 2025-06-03T02:09:01,785 writing manifest file '/tmp/pip-pip-egg-info-7drhjhx0/ndex2.egg-info/SOURCES.txt' 2025-06-03T02:09:01,890 Preparing metadata (setup.py): finished with status 'done' 2025-06-03T02:09:01,895 Source in /tmp/pip-wheel-cb7uk9oj/ndex2_3c3a30a6227645b79e138b9a9b33a4e9 has version 3.11.0a1, which satisfies requirement ndex2==3.11.0a1 from https://files.pythonhosted.org/packages/95/f3/dd07c7d0d63e5ada1363ed1e0c60f382e775dbc9f81ec889ea80cc662293/ndex2-3.11.0a1.tar.gz 2025-06-03T02:09:01,896 Removed ndex2==3.11.0a1 from https://files.pythonhosted.org/packages/95/f3/dd07c7d0d63e5ada1363ed1e0c60f382e775dbc9f81ec889ea80cc662293/ndex2-3.11.0a1.tar.gz from build tracker '/tmp/pip-build-tracker-f5sn_pwj' 2025-06-03T02:09:01,905 Created temporary directory: /tmp/pip-unpack-ylgha51t 2025-06-03T02:09:01,906 Created temporary directory: /tmp/pip-unpack-29ab0855 2025-06-03T02:09:01,907 Building wheels for collected packages: ndex2 2025-06-03T02:09:01,911 Created temporary directory: /tmp/pip-wheel-4adj7gcr 2025-06-03T02:09:01,912 DEPRECATION: Building 'ndex2' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'ndex2'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-06-03T02:09:01,913 Building wheel for ndex2 (setup.py): started 2025-06-03T02:09:01,915 Destination directory: /tmp/pip-wheel-4adj7gcr 2025-06-03T02:09:01,915 Running command python setup.py bdist_wheel 2025-06-03T02:09:02,739 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-06-03T02:09:02,739 !! 2025-06-03T02:09:02,740 ******************************************************************************** 2025-06-03T02:09:02,740 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-06-03T02:09:02,741 License :: OSI Approved :: BSD License 2025-06-03T02:09:02,742 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-06-03T02:09:02,743 ******************************************************************************** 2025-06-03T02:09:02,744 !! 2025-06-03T02:09:02,744 self._finalize_license_expression() 2025-06-03T02:09:02,745 running bdist_wheel 2025-06-03T02:09:02,819 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:135: SetuptoolsDeprecationWarning: bdist_wheel.universal is deprecated 2025-06-03T02:09:02,820 !! 2025-06-03T02:09:02,821 ******************************************************************************** 2025-06-03T02:09:02,821 With Python 2.7 end-of-life, support for building universal wheels 2025-06-03T02:09:02,822 (i.e., wheels that support both Python 2 and Python 3) 2025-06-03T02:09:02,822 is being obviated. 2025-06-03T02:09:02,823 Please discontinue using this option, or if you still need it, 2025-06-03T02:09:02,823 file an issue with pypa/setuptools describing your use case. 2025-06-03T02:09:02,824 By 2025-Aug-30, you need to update your project and remove deprecated calls 2025-06-03T02:09:02,825 or your builds will no longer be supported. 2025-06-03T02:09:02,825 ******************************************************************************** 2025-06-03T02:09:02,826 !! 2025-06-03T02:09:02,827 self.finalize_options() 2025-06-03T02:09:02,873 running build 2025-06-03T02:09:02,874 running build_py 2025-06-03T02:09:02,903 creating build/lib/ndex2cx 2025-06-03T02:09:02,906 copying ndex2cx/__init__.py -> build/lib/ndex2cx 2025-06-03T02:09:02,908 copying ndex2cx/parallelCX.py -> build/lib/ndex2cx 2025-06-03T02:09:02,910 copying ndex2cx/nice_cx_builder.py -> build/lib/ndex2cx 2025-06-03T02:09:02,914 creating build/lib/ndex2 2025-06-03T02:09:02,915 copying ndex2/niceCxInterface.py -> build/lib/ndex2 2025-06-03T02:09:02,918 copying ndex2/nice_cx_network.py -> build/lib/ndex2 2025-06-03T02:09:02,922 copying ndex2/cx2.py -> build/lib/ndex2 2025-06-03T02:09:02,926 copying ndex2/__init__.py -> build/lib/ndex2 2025-06-03T02:09:02,929 copying ndex2/client.py -> build/lib/ndex2 2025-06-03T02:09:02,933 copying ndex2/util.py -> build/lib/ndex2 2025-06-03T02:09:02,935 copying ndex2/constants.py -> build/lib/ndex2 2025-06-03T02:09:02,937 copying ndex2/version.py -> build/lib/ndex2 2025-06-03T02:09:02,939 copying ndex2/exceptions.py -> build/lib/ndex2 2025-06-03T02:09:02,941 running egg_info 2025-06-03T02:09:02,968 writing ndex2.egg-info/PKG-INFO 2025-06-03T02:09:02,972 writing dependency_links to ndex2.egg-info/dependency_links.txt 2025-06-03T02:09:02,975 writing requirements to ndex2.egg-info/requires.txt 2025-06-03T02:09:02,976 writing top-level names to ndex2.egg-info/top_level.txt 2025-06-03T02:09:03,009 reading manifest file 'ndex2.egg-info/SOURCES.txt' 2025-06-03T02:09:03,014 reading manifest template 'MANIFEST.in' 2025-06-03T02:09:03,030 warning: no previously-included files matching '__pycache__' found under directory '*' 2025-06-03T02:09:03,031 warning: no previously-included files matching '*.py[co]' found under directory '*' 2025-06-03T02:09:03,056 warning: no files found matching 'make.bat' under directory 'docs' 2025-06-03T02:09:03,065 warning: no files found matching '*.jpg' under directory 'docs' 2025-06-03T02:09:03,083 warning: no files found matching '*.gif' under directory 'docs' 2025-06-03T02:09:03,084 adding license file 'LICENSE.txt' 2025-06-03T02:09:03,089 writing manifest file 'ndex2.egg-info/SOURCES.txt' 2025-06-03T02:09:03,118 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-06-03T02:09:03,119 !! 2025-06-03T02:09:03,120 ******************************************************************************** 2025-06-03T02:09:03,120 Please avoid running ``setup.py`` directly. 2025-06-03T02:09:03,121 Instead, use pypa/build, pypa/installer or other 2025-06-03T02:09:03,121 standards-based tools. 2025-06-03T02:09:03,122 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-06-03T02:09:03,123 or your builds will no longer be supported. 2025-06-03T02:09:03,124 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-06-03T02:09:03,124 ******************************************************************************** 2025-06-03T02:09:03,125 !! 2025-06-03T02:09:03,125 self.initialize_options() 2025-06-03T02:09:03,145 installing to build/bdist.linux-armv7l/wheel 2025-06-03T02:09:03,145 running install 2025-06-03T02:09:03,169 running install_lib 2025-06-03T02:09:03,195 creating build/bdist.linux-armv7l/wheel 2025-06-03T02:09:03,197 creating build/bdist.linux-armv7l/wheel/ndex2cx 2025-06-03T02:09:03,198 copying build/lib/ndex2cx/__init__.py -> build/bdist.linux-armv7l/wheel/./ndex2cx 2025-06-03T02:09:03,200 copying build/lib/ndex2cx/parallelCX.py -> build/bdist.linux-armv7l/wheel/./ndex2cx 2025-06-03T02:09:03,202 copying build/lib/ndex2cx/nice_cx_builder.py -> build/bdist.linux-armv7l/wheel/./ndex2cx 2025-06-03T02:09:03,205 creating build/bdist.linux-armv7l/wheel/ndex2 2025-06-03T02:09:03,206 copying build/lib/ndex2/niceCxInterface.py -> build/bdist.linux-armv7l/wheel/./ndex2 2025-06-03T02:09:03,209 copying build/lib/ndex2/nice_cx_network.py -> build/bdist.linux-armv7l/wheel/./ndex2 2025-06-03T02:09:03,213 copying build/lib/ndex2/cx2.py -> build/bdist.linux-armv7l/wheel/./ndex2 2025-06-03T02:09:03,217 copying build/lib/ndex2/__init__.py -> build/bdist.linux-armv7l/wheel/./ndex2 2025-06-03T02:09:03,220 copying build/lib/ndex2/client.py -> build/bdist.linux-armv7l/wheel/./ndex2 2025-06-03T02:09:03,224 copying build/lib/ndex2/util.py -> build/bdist.linux-armv7l/wheel/./ndex2 2025-06-03T02:09:03,226 copying build/lib/ndex2/constants.py -> build/bdist.linux-armv7l/wheel/./ndex2 2025-06-03T02:09:03,228 copying build/lib/ndex2/version.py -> build/bdist.linux-armv7l/wheel/./ndex2 2025-06-03T02:09:03,230 copying build/lib/ndex2/exceptions.py -> build/bdist.linux-armv7l/wheel/./ndex2 2025-06-03T02:09:03,231 running install_egg_info 2025-06-03T02:09:03,267 Copying ndex2.egg-info to build/bdist.linux-armv7l/wheel/./ndex2-3.11.0a1-py3.11.egg-info 2025-06-03T02:09:03,278 running install_scripts 2025-06-03T02:09:03,291 creating build/bdist.linux-armv7l/wheel/ndex2-3.11.0a1.dist-info/WHEEL 2025-06-03T02:09:03,293 creating '/tmp/pip-wheel-4adj7gcr/ndex2-3.11.0a1-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-06-03T02:09:03,298 adding 'ndex2/__init__.py' 2025-06-03T02:09:03,307 adding 'ndex2/client.py' 2025-06-03T02:09:03,309 adding 'ndex2/constants.py' 2025-06-03T02:09:03,318 adding 'ndex2/cx2.py' 2025-06-03T02:09:03,320 adding 'ndex2/exceptions.py' 2025-06-03T02:09:03,322 adding 'ndex2/niceCxInterface.py' 2025-06-03T02:09:03,333 adding 'ndex2/nice_cx_network.py' 2025-06-03T02:09:03,335 adding 'ndex2/util.py' 2025-06-03T02:09:03,336 adding 'ndex2/version.py' 2025-06-03T02:09:03,339 adding 'ndex2-3.11.0a1.dist-info/licenses/LICENSE.txt' 2025-06-03T02:09:03,341 adding 'ndex2cx/__init__.py' 2025-06-03T02:09:03,343 adding 'ndex2cx/nice_cx_builder.py' 2025-06-03T02:09:03,345 adding 'ndex2cx/parallelCX.py' 2025-06-03T02:09:03,347 adding 'ndex2-3.11.0a1.dist-info/METADATA' 2025-06-03T02:09:03,348 adding 'ndex2-3.11.0a1.dist-info/WHEEL' 2025-06-03T02:09:03,349 adding 'ndex2-3.11.0a1.dist-info/top_level.txt' 2025-06-03T02:09:03,350 adding 'ndex2-3.11.0a1.dist-info/RECORD' 2025-06-03T02:09:03,353 removing build/bdist.linux-armv7l/wheel 2025-06-03T02:09:03,464 Building wheel for ndex2 (setup.py): finished with status 'done' 2025-06-03T02:09:03,467 Created wheel for ndex2: filename=ndex2-3.11.0a1-py2.py3-none-any.whl size=78340 sha256=2b3d35eb6e2ebc15ae70b7552b815e5865d71e6f390db5a4d07b24eb2d0ec5ad 2025-06-03T02:09:03,468 Stored in directory: /tmp/pip-ephem-wheel-cache-m1g1qz4q/wheels/ed/8b/c1/cea6fcd6ca570aafa0d069c079f62c6f6363f4648008270369 2025-06-03T02:09:03,481 Successfully built ndex2 2025-06-03T02:09:03,486 Removed build tracker: '/tmp/pip-build-tracker-f5sn_pwj'