2025-06-03T10:44:46,411 Created temporary directory: /tmp/pip-build-tracker-gmboi28w 2025-06-03T10:44:46,412 Initialized build tracking at /tmp/pip-build-tracker-gmboi28w 2025-06-03T10:44:46,413 Created build tracker: /tmp/pip-build-tracker-gmboi28w 2025-06-03T10:44:46,413 Entered build tracker: /tmp/pip-build-tracker-gmboi28w 2025-06-03T10:44:46,414 Created temporary directory: /tmp/pip-wheel-um30elbx 2025-06-03T10:44:46,418 Created temporary directory: /tmp/pip-ephem-wheel-cache-431h6t8e 2025-06-03T10:44:46,467 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-06-03T10:44:46,469 2 location(s) to search for versions of hivclustering: 2025-06-03T10:44:46,469 * https://pypi.org/simple/hivclustering/ 2025-06-03T10:44:46,469 * https://www.piwheels.org/simple/hivclustering/ 2025-06-03T10:44:46,470 Fetching project page and analyzing links: https://pypi.org/simple/hivclustering/ 2025-06-03T10:44:46,471 Getting page https://pypi.org/simple/hivclustering/ 2025-06-03T10:44:46,472 Found index url https://pypi.org/simple/ 2025-06-03T10:44:46,776 Fetched page https://pypi.org/simple/hivclustering/ as application/vnd.pypi.simple.v1+json 2025-06-03T10:44:46,780 Found link https://files.pythonhosted.org/packages/be/63/218c39b9ad0311be7a12702cf853f2d0305e6fd4458d58d3ee0a3bf429a6/hivclustering-1.2.5.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.2.5 2025-06-03T10:44:46,781 Found link https://files.pythonhosted.org/packages/67/d6/ccf018b983946e9edbcb38bdac99dad65e3199623505563a793e3d7993ca/hivclustering-1.2.6.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.2.6 2025-06-03T10:44:46,782 Found link https://files.pythonhosted.org/packages/94/78/880ea9da2705624a346e8f823b6cab8fc264b8505336d5d19280af23e619/hivclustering-1.2.7.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.2.7 2025-06-03T10:44:46,782 Found link https://files.pythonhosted.org/packages/50/01/828d4bfa522848698970e08f4277024c18852b86dbdfc5191bb271d756af/hivclustering-1.2.8.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.2.8 2025-06-03T10:44:46,783 Found link https://files.pythonhosted.org/packages/b8/f3/4eb8073b7f1343311edb38046396c39debb8553bbbcabf3866cfe9057c4e/hivclustering-1.3.0.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.3.0 2025-06-03T10:44:46,784 Found link https://files.pythonhosted.org/packages/48/82/f9031dd1c00db81a9165533a52508e28190a9a48b88103f7d61b18f3ed6d/hivclustering-1.3.1.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.3.1 2025-06-03T10:44:46,784 Found link https://files.pythonhosted.org/packages/eb/5c/56e25f045d57d87737de12af90eb9d31d6e0ddb490c614fcf719a5a51de8/hivclustering-1.3.2.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.3.2 2025-06-03T10:44:46,785 Found link https://files.pythonhosted.org/packages/ad/1b/ddc494adedcd724936919219d78d243f45a07afd806a91f64e6b6b83a411/hivclustering-1.4.1.macosx-10.13-x86_64.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.4.1.macosx-10.13-x86_64 2025-06-03T10:44:46,786 Found link https://files.pythonhosted.org/packages/c8/ad/30f905579ed48a1df529c7deb1d9da7fb2967fc995b3a7a6aab4395244e7/hivclustering-1.4.2.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.4.2 2025-06-03T10:44:46,787 Found link https://files.pythonhosted.org/packages/52/bb/41b5d5516072ed73d68dc15c00412d9573eaf91e23d67bd98ae78d900d34/hivclustering-1.5.1.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.5.1 2025-06-03T10:44:46,787 Found link https://files.pythonhosted.org/packages/a0/c2/8b3aec81b0f81a22d9185cfa5d37d55934cc40606b06925c3ee9c3f491af/hivclustering-1.5.2.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.5.2 2025-06-03T10:44:46,788 Found link https://files.pythonhosted.org/packages/63/17/4605c1c87e3723a00e8eb42f7d4447f7caf435d42157098ff6c01bdd2e37/hivclustering-1.5.3.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.5.3 2025-06-03T10:44:46,789 Found link https://files.pythonhosted.org/packages/fd/07/061ce4cf24804185c21ec2fef88fcb32e879eeabf5f3d8175e8ea542f971/hivclustering-1.5.4.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.5.4 2025-06-03T10:44:46,789 Found link https://files.pythonhosted.org/packages/0c/a6/867a016c6b57f0ba9319a19965f71c0aa3ffeea31de659cec77eec61e1f7/hivclustering-1.5.5.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.5.5 2025-06-03T10:44:46,790 Found link https://files.pythonhosted.org/packages/21/e2/594b207e4ca053018bb7c6a05a09e5d6320e6b763d7ce3168fd9cd320b92/hivclustering-1.5.6.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.5.6 2025-06-03T10:44:46,791 Found link https://files.pythonhosted.org/packages/ba/96/d6e85a86f9155dab46e4b8eb9ff9859f281ec5d5ddfda2893411cb470ab7/hivclustering-1.6.0.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.6.0 2025-06-03T10:44:46,791 Found link https://files.pythonhosted.org/packages/0a/42/d7d17d0f48093305713468653526872f20d447d91d95dde19539a5c98f4b/hivclustering-1.6.1.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.6.1 2025-06-03T10:44:46,792 Found link https://files.pythonhosted.org/packages/06/27/ddc42bc60270c1b726a9dcd1971665ac257ca423cd83032cc4157000aaba/hivclustering-1.6.2.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.6.2 2025-06-03T10:44:46,792 Found link https://files.pythonhosted.org/packages/8c/27/1c8b29923936dda2893e2c060062bd99c11c01806a769fce6213d12d6587/hivclustering-1.6.3.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.6.3 2025-06-03T10:44:46,793 Found link https://files.pythonhosted.org/packages/f4/87/b69a4f8b1b5495cdd411fbf6b26719c614bf9df2769dc879d8ebc629c9b4/hivclustering-1.6.4.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.6.4 2025-06-03T10:44:46,793 Skipping link: No binaries permitted for hivclustering: https://files.pythonhosted.org/packages/34/8c/0de865c0c8fb2ecd1d89ede3f3f83f85d197e271b7dcdcaa3516c881c965/hivclustering-1.6.5-py3-none-any.whl (from https://pypi.org/simple/hivclustering/) 2025-06-03T10:44:46,794 Found link https://files.pythonhosted.org/packages/4c/b4/7a699eca4918e73b2eb14ad3ff99c7e609ee88601b060a2fee4c96417673/hivclustering-1.6.5.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.6.5 2025-06-03T10:44:46,795 Skipping link: No binaries permitted for hivclustering: https://files.pythonhosted.org/packages/21/33/849c3fe3744ba1f195434e32297893568d1312c0464b8912491d356ef22e/hivclustering-1.6.6-py3-none-any.whl (from https://pypi.org/simple/hivclustering/) 2025-06-03T10:44:46,795 Skipping link: No binaries permitted for hivclustering: https://files.pythonhosted.org/packages/2c/13/c6b43cda5d3950b48e82274cf39455132c64cfe88e23ca9b348bcfc0b845/hivclustering-1.6.7-py3-none-any.whl (from https://pypi.org/simple/hivclustering/) 2025-06-03T10:44:46,796 Found link https://files.pythonhosted.org/packages/98/28/f855f0803a8fe6f4f0916b158f57e50bc63a38576b73958c56af95128c8f/hivclustering-1.6.7.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.6.7 2025-06-03T10:44:46,796 Found link https://files.pythonhosted.org/packages/ab/92/e6ec5e7e907d6857dfbe0f1e6e9a0676c9c8a9f55eac2afe35e0353797c2/hivclustering-1.6.8.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.6.8 2025-06-03T10:44:46,797 Found link https://files.pythonhosted.org/packages/ee/cf/c13c2c1e4141935145b94d33f8f2bdf96677009643401bce9a5fba88c0cf/hivclustering-1.7.0.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.7.0 2025-06-03T10:44:46,798 Found link https://files.pythonhosted.org/packages/42/d3/854326ba5c558c960a0860244ce59f5259c7ed67d24bc7d50edaec6f941b/hivclustering-1.8.0.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.8.0 2025-06-03T10:44:46,798 Found link https://files.pythonhosted.org/packages/be/35/32075a85a11abb3e46b5c68e8a812ed47c70be777283c2546e01a0ca8595/hivclustering-1.9.0.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.9.0 2025-06-03T10:44:46,799 Found link https://files.pythonhosted.org/packages/20/82/fc09ec449cd701ebee5c617d40251438bb8d729967345363367b68e693b4/hivclustering-1.9.1.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.9.1 2025-06-03T10:44:46,800 Found link https://files.pythonhosted.org/packages/19/c3/b000e6a09a102361863f2026e88ee54a5fdb477195614b3dce802a10b036/hivclustering-1.9.2.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.9.2 2025-06-03T10:44:46,801 Found link https://files.pythonhosted.org/packages/51/0d/53ce02283e351acf1cbae924eabb2ff0805a9b4193902ca085184afe386b/hivclustering-1.9.3.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.9.3 2025-06-03T10:44:46,801 Found link https://files.pythonhosted.org/packages/64/8f/252e8f27564399dc4784d397bcb26b56dae6fe834444aedbcd47cf4a1d89/hivclustering-1.9.4.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.9.4 2025-06-03T10:44:46,802 Found link https://files.pythonhosted.org/packages/9a/e8/14bd1c48fb4da153dbddf5bed68b7e0505454321946f32f9f56e5d62d8ee/hivclustering-1.9.5.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.9.5 2025-06-03T10:44:46,803 Fetching project page and analyzing links: https://www.piwheels.org/simple/hivclustering/ 2025-06-03T10:44:46,803 Getting page https://www.piwheels.org/simple/hivclustering/ 2025-06-03T10:44:46,804 Found index url https://www.piwheels.org/simple/ 2025-06-03T10:44:46,963 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/hivclustering/ 2025-06-03T10:44:47,617 WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/hivclustering/ 2025-06-03T10:44:48,838 WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/hivclustering/ 2025-06-03T10:44:51,037 WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/hivclustering/ 2025-06-03T10:44:55,249 WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))': /simple/hivclustering/ 2025-06-03T10:44:55,466 Could not fetch URL https://www.piwheels.org/simple/hivclustering/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='www.piwheels.org', port=443): Max retries exceeded with url: /simple/hivclustering/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate is not yet valid (_ssl.c:992)'))) - skipping 2025-06-03T10:44:55,467 Skipping link: not a file: https://www.piwheels.org/simple/hivclustering/ 2025-06-03T10:44:55,468 Skipping link: not a file: https://pypi.org/simple/hivclustering/ 2025-06-03T10:44:55,491 Given no hashes to check 1 links for project 'hivclustering': discarding no candidates 2025-06-03T10:44:55,493 Collecting hivclustering==1.9.0 2025-06-03T10:44:55,495 Created temporary directory: /tmp/pip-unpack-gdc1svv9 2025-06-03T10:44:55,716 Downloading hivclustering-1.9.0.tar.gz (61 kB) 2025-06-03T10:44:55,819 Added hivclustering==1.9.0 from https://files.pythonhosted.org/packages/be/35/32075a85a11abb3e46b5c68e8a812ed47c70be777283c2546e01a0ca8595/hivclustering-1.9.0.tar.gz to build tracker '/tmp/pip-build-tracker-gmboi28w' 2025-06-03T10:44:55,821 Running setup.py (path:/tmp/pip-wheel-um30elbx/hivclustering_d6f2263d8ebf4c188a4e3894e84a2bab/setup.py) egg_info for package hivclustering 2025-06-03T10:44:55,822 Created temporary directory: /tmp/pip-pip-egg-info-pjnbfhkb 2025-06-03T10:44:55,823 Preparing metadata (setup.py): started 2025-06-03T10:44:55,824 Running command python setup.py egg_info 2025-06-03T10:44:56,761 running egg_info 2025-06-03T10:44:56,791 creating /tmp/pip-pip-egg-info-pjnbfhkb/hivclustering.egg-info 2025-06-03T10:44:56,792 writing /tmp/pip-pip-egg-info-pjnbfhkb/hivclustering.egg-info/PKG-INFO 2025-06-03T10:44:56,797 writing dependency_links to /tmp/pip-pip-egg-info-pjnbfhkb/hivclustering.egg-info/dependency_links.txt 2025-06-03T10:44:56,800 writing requirements to /tmp/pip-pip-egg-info-pjnbfhkb/hivclustering.egg-info/requires.txt 2025-06-03T10:44:56,801 writing top-level names to /tmp/pip-pip-egg-info-pjnbfhkb/hivclustering.egg-info/top_level.txt 2025-06-03T10:44:56,803 writing manifest file '/tmp/pip-pip-egg-info-pjnbfhkb/hivclustering.egg-info/SOURCES.txt' 2025-06-03T10:44:56,926 reading manifest file '/tmp/pip-pip-egg-info-pjnbfhkb/hivclustering.egg-info/SOURCES.txt' 2025-06-03T10:44:56,930 writing manifest file '/tmp/pip-pip-egg-info-pjnbfhkb/hivclustering.egg-info/SOURCES.txt' 2025-06-03T10:44:57,035 Preparing metadata (setup.py): finished with status 'done' 2025-06-03T10:44:57,039 Source in /tmp/pip-wheel-um30elbx/hivclustering_d6f2263d8ebf4c188a4e3894e84a2bab has version 1.9.0, which satisfies requirement hivclustering==1.9.0 from https://files.pythonhosted.org/packages/be/35/32075a85a11abb3e46b5c68e8a812ed47c70be777283c2546e01a0ca8595/hivclustering-1.9.0.tar.gz 2025-06-03T10:44:57,040 Removed hivclustering==1.9.0 from https://files.pythonhosted.org/packages/be/35/32075a85a11abb3e46b5c68e8a812ed47c70be777283c2546e01a0ca8595/hivclustering-1.9.0.tar.gz from build tracker '/tmp/pip-build-tracker-gmboi28w' 2025-06-03T10:44:57,045 Created temporary directory: /tmp/pip-unpack-yoo6d973 2025-06-03T10:44:57,046 Created temporary directory: /tmp/pip-unpack-6j7t9n4c 2025-06-03T10:44:57,047 Building wheels for collected packages: hivclustering 2025-06-03T10:44:57,051 Created temporary directory: /tmp/pip-wheel-bjb931vp 2025-06-03T10:44:57,052 DEPRECATION: Building 'hivclustering' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'hivclustering'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-06-03T10:44:57,053 Building wheel for hivclustering (setup.py): started 2025-06-03T10:44:57,054 Destination directory: /tmp/pip-wheel-bjb931vp 2025-06-03T10:44:57,055 Running command python setup.py bdist_wheel 2025-06-03T10:44:57,872 running bdist_wheel 2025-06-03T10:44:58,001 running build 2025-06-03T10:44:58,002 running build_py 2025-06-03T10:44:58,033 creating build/lib/hivclustering 2025-06-03T10:44:58,035 copying hivclustering/__init__.py -> build/lib/hivclustering 2025-06-03T10:44:58,037 copying hivclustering/networkbuild.py -> build/lib/hivclustering 2025-06-03T10:44:58,041 copying hivclustering/mtnetwork.py -> build/lib/hivclustering 2025-06-03T10:44:58,051 creating build/lib/hivclustering/data/HBL 2025-06-03T10:44:58,052 copying hivclustering/data/HBL/ExtractSequences.bf -> build/lib/hivclustering/data/HBL 2025-06-03T10:44:58,055 copying hivclustering/data/HBL/ExtractACluster.bf -> build/lib/hivclustering/data/HBL 2025-06-03T10:44:58,057 copying hivclustering/data/HBL/DegreeDistributions.bf -> build/lib/hivclustering/data/HBL 2025-06-03T10:44:58,060 copying hivclustering/data/HBL/CycleSupport.bf -> build/lib/hivclustering/data/HBL 2025-06-03T10:44:58,063 copying hivclustering/data/HBL/SimulateSequence.bf -> build/lib/hivclustering/data/HBL 2025-06-03T10:44:58,065 copying hivclustering/data/HBL/TriangleSupport.bf -> build/lib/hivclustering/data/HBL 2025-06-03T10:44:58,068 running build_scripts 2025-06-03T10:44:58,069 creating build/scripts-3.11 2025-06-03T10:44:58,069 copying and adjusting scripts/hivnetworkcsv -> build/scripts-3.11 2025-06-03T10:44:58,073 copying and adjusting scripts/TNS -> build/scripts-3.11 2025-06-03T10:44:58,075 copying and adjusting scripts/hivnetworkannotate -> build/scripts-3.11 2025-06-03T10:44:58,077 changing mode of build/scripts-3.11/hivnetworkcsv from 644 to 755 2025-06-03T10:44:58,077 changing mode of build/scripts-3.11/TNS from 644 to 755 2025-06-03T10:44:58,078 changing mode of build/scripts-3.11/hivnetworkannotate from 644 to 755 2025-06-03T10:44:58,104 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-06-03T10:44:58,105 !! 2025-06-03T10:44:58,106 ******************************************************************************** 2025-06-03T10:44:58,106 Please avoid running ``setup.py`` directly. 2025-06-03T10:44:58,107 Instead, use pypa/build, pypa/installer or other 2025-06-03T10:44:58,107 standards-based tools. 2025-06-03T10:44:58,108 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-06-03T10:44:58,109 or your builds will no longer be supported. 2025-06-03T10:44:58,110 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-06-03T10:44:58,110 ******************************************************************************** 2025-06-03T10:44:58,111 !! 2025-06-03T10:44:58,112 self.initialize_options() 2025-06-03T10:44:58,132 installing to build/bdist.linux-armv7l/wheel 2025-06-03T10:44:58,133 running install 2025-06-03T10:44:58,156 running install_lib 2025-06-03T10:44:58,182 creating build/bdist.linux-armv7l/wheel 2025-06-03T10:44:58,184 creating build/bdist.linux-armv7l/wheel/hivclustering 2025-06-03T10:44:58,185 copying build/lib/hivclustering/__init__.py -> build/bdist.linux-armv7l/wheel/./hivclustering 2025-06-03T10:44:58,188 copying build/lib/hivclustering/networkbuild.py -> build/bdist.linux-armv7l/wheel/./hivclustering 2025-06-03T10:44:58,190 copying build/lib/hivclustering/mtnetwork.py -> build/bdist.linux-armv7l/wheel/./hivclustering 2025-06-03T10:44:58,195 creating build/bdist.linux-armv7l/wheel/hivclustering/data 2025-06-03T10:44:58,196 creating build/bdist.linux-armv7l/wheel/hivclustering/data/HBL 2025-06-03T10:44:58,198 copying build/lib/hivclustering/data/HBL/ExtractSequences.bf -> build/bdist.linux-armv7l/wheel/./hivclustering/data/HBL 2025-06-03T10:44:58,200 copying build/lib/hivclustering/data/HBL/ExtractACluster.bf -> build/bdist.linux-armv7l/wheel/./hivclustering/data/HBL 2025-06-03T10:44:58,201 copying build/lib/hivclustering/data/HBL/DegreeDistributions.bf -> build/bdist.linux-armv7l/wheel/./hivclustering/data/HBL 2025-06-03T10:44:58,204 copying build/lib/hivclustering/data/HBL/CycleSupport.bf -> build/bdist.linux-armv7l/wheel/./hivclustering/data/HBL 2025-06-03T10:44:58,206 copying build/lib/hivclustering/data/HBL/SimulateSequence.bf -> build/bdist.linux-armv7l/wheel/./hivclustering/data/HBL 2025-06-03T10:44:58,208 copying build/lib/hivclustering/data/HBL/TriangleSupport.bf -> build/bdist.linux-armv7l/wheel/./hivclustering/data/HBL 2025-06-03T10:44:58,210 running install_egg_info 2025-06-03T10:44:58,244 running egg_info 2025-06-03T10:44:58,272 writing hivclustering.egg-info/PKG-INFO 2025-06-03T10:44:58,277 writing dependency_links to hivclustering.egg-info/dependency_links.txt 2025-06-03T10:44:58,279 writing requirements to hivclustering.egg-info/requires.txt 2025-06-03T10:44:58,281 writing top-level names to hivclustering.egg-info/top_level.txt 2025-06-03T10:44:58,311 reading manifest file 'hivclustering.egg-info/SOURCES.txt' 2025-06-03T10:44:58,317 writing manifest file 'hivclustering.egg-info/SOURCES.txt' 2025-06-03T10:44:58,318 Copying hivclustering.egg-info to build/bdist.linux-armv7l/wheel/./hivclustering-1.9.0-py3.11.egg-info 2025-06-03T10:44:58,328 running install_scripts 2025-06-03T10:44:58,329 creating build/bdist.linux-armv7l/wheel/hivclustering-1.9.0.data/scripts 2025-06-03T10:44:58,331 copying build/scripts-3.11/hivnetworkcsv -> build/bdist.linux-armv7l/wheel/hivclustering-1.9.0.data/scripts 2025-06-03T10:44:58,334 copying build/scripts-3.11/hivnetworkannotate -> build/bdist.linux-armv7l/wheel/hivclustering-1.9.0.data/scripts 2025-06-03T10:44:58,336 copying build/scripts-3.11/TNS -> build/bdist.linux-armv7l/wheel/hivclustering-1.9.0.data/scripts 2025-06-03T10:44:58,338 changing mode of build/bdist.linux-armv7l/wheel/hivclustering-1.9.0.data/scripts/hivnetworkcsv to 755 2025-06-03T10:44:58,339 changing mode of build/bdist.linux-armv7l/wheel/hivclustering-1.9.0.data/scripts/hivnetworkannotate to 755 2025-06-03T10:44:58,339 changing mode of build/bdist.linux-armv7l/wheel/hivclustering-1.9.0.data/scripts/TNS to 755 2025-06-03T10:44:58,349 creating build/bdist.linux-armv7l/wheel/hivclustering-1.9.0.dist-info/WHEEL 2025-06-03T10:44:58,351 creating '/tmp/pip-wheel-bjb931vp/hivclustering-1.9.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-06-03T10:44:58,354 adding 'hivclustering/__init__.py' 2025-06-03T10:44:58,366 adding 'hivclustering/mtnetwork.py' 2025-06-03T10:44:58,372 adding 'hivclustering/networkbuild.py' 2025-06-03T10:44:58,375 adding 'hivclustering/data/HBL/CycleSupport.bf' 2025-06-03T10:44:58,377 adding 'hivclustering/data/HBL/DegreeDistributions.bf' 2025-06-03T10:44:58,379 adding 'hivclustering/data/HBL/ExtractACluster.bf' 2025-06-03T10:44:58,380 adding 'hivclustering/data/HBL/ExtractSequences.bf' 2025-06-03T10:44:58,382 adding 'hivclustering/data/HBL/SimulateSequence.bf' 2025-06-03T10:44:58,383 adding 'hivclustering/data/HBL/TriangleSupport.bf' 2025-06-03T10:44:58,387 adding 'hivclustering-1.9.0.data/scripts/TNS' 2025-06-03T10:44:58,390 adding 'hivclustering-1.9.0.data/scripts/hivnetworkannotate' 2025-06-03T10:44:58,393 adding 'hivclustering-1.9.0.data/scripts/hivnetworkcsv' 2025-06-03T10:44:58,395 adding 'hivclustering-1.9.0.dist-info/METADATA' 2025-06-03T10:44:58,396 adding 'hivclustering-1.9.0.dist-info/WHEEL' 2025-06-03T10:44:58,397 adding 'hivclustering-1.9.0.dist-info/top_level.txt' 2025-06-03T10:44:58,398 adding 'hivclustering-1.9.0.dist-info/RECORD' 2025-06-03T10:44:58,400 removing build/bdist.linux-armv7l/wheel 2025-06-03T10:44:58,512 Building wheel for hivclustering (setup.py): finished with status 'done' 2025-06-03T10:44:58,515 Created wheel for hivclustering: filename=hivclustering-1.9.0-py3-none-any.whl size=61563 sha256=8cbee8fb5d8675d06130c06f6c3166fc9ba9f6007c330a175f477b1ae883b2e2 2025-06-03T10:44:58,516 Stored in directory: /tmp/pip-ephem-wheel-cache-431h6t8e/wheels/d8/0a/ef/367c29e749cc1b41ec48d93aedbf7cae32606add8d71d3f2ed 2025-06-03T10:44:58,525 Successfully built hivclustering 2025-06-03T10:44:58,530 Removed build tracker: '/tmp/pip-build-tracker-gmboi28w'