2025-08-30T21:39:08,140 Created temporary directory: /tmp/pip-build-tracker-kb8r249v 2025-08-30T21:39:08,141 Initialized build tracking at /tmp/pip-build-tracker-kb8r249v 2025-08-30T21:39:08,142 Created build tracker: /tmp/pip-build-tracker-kb8r249v 2025-08-30T21:39:08,142 Entered build tracker: /tmp/pip-build-tracker-kb8r249v 2025-08-30T21:39:08,143 Created temporary directory: /tmp/pip-wheel-s5wjjm2f 2025-08-30T21:39:08,147 Created temporary directory: /tmp/pip-ephem-wheel-cache-xwon7g32 2025-08-30T21:39:08,197 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-08-30T21:39:08,199 2 location(s) to search for versions of rcsb-workflow: 2025-08-30T21:39:08,199 * https://pypi.org/simple/rcsb-workflow/ 2025-08-30T21:39:08,199 * https://www.piwheels.org/simple/rcsb-workflow/ 2025-08-30T21:39:08,200 Fetching project page and analyzing links: https://pypi.org/simple/rcsb-workflow/ 2025-08-30T21:39:08,201 Getting page https://pypi.org/simple/rcsb-workflow/ 2025-08-30T21:39:08,202 Found index url https://pypi.org/simple/ 2025-08-30T21:39:08,349 Fetched page https://pypi.org/simple/rcsb-workflow/ as application/vnd.pypi.simple.v1+json 2025-08-30T21:39:08,356 Skipping link: No binaries permitted for rcsb-workflow: https://files.pythonhosted.org/packages/78/d0/23a8be8725a48eddd981f46bd8687593b205a5ed6abf17fb9334a294586e/rcsb.workflow-0.10-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-workflow/) 2025-08-30T21:39:08,356 Found link https://files.pythonhosted.org/packages/cb/7d/aa1db48a899f79509fad6f390290d0f694147b18b17fa6e72c19941339b1/rcsb.workflow-0.10.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.10 2025-08-30T21:39:08,357 Skipping link: No binaries permitted for rcsb-workflow: https://files.pythonhosted.org/packages/75/b4/d5f90585e059bcaa41921139c1cddc229672c48dfadcf54fc051592d7cb4/rcsb.workflow-0.12-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-workflow/) 2025-08-30T21:39:08,357 Found link https://files.pythonhosted.org/packages/5e/a1/8b0645289b2fd41a36c059dc0394a913e713acbf9ca72645f72d85e44f51/rcsb.workflow-0.12.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.12 2025-08-30T21:39:08,358 Skipping link: No binaries permitted for rcsb-workflow: https://files.pythonhosted.org/packages/fd/31/e5a6269e92556d5a488d1a849661b150065107a2634466c3c4ecc5ea6911/rcsb.workflow-0.13-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-workflow/) 2025-08-30T21:39:08,359 Found link https://files.pythonhosted.org/packages/ef/34/1490a3d7c1675c3be838c9795bbb4441bad3d7c2cc2d404c0597c24d99a7/rcsb.workflow-0.13.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.13 2025-08-30T21:39:08,359 Skipping link: No binaries permitted for rcsb-workflow: https://files.pythonhosted.org/packages/5a/7c/08087b77aa0ba0210b46ba55eeaa64f8b312763d2d110cafe929b987822a/rcsb.workflow-0.14-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-workflow/) 2025-08-30T21:39:08,360 Found 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Found link https://files.pythonhosted.org/packages/db/a0/0001e1c66b7baac6d5ce53e0e4947ee90a062e9c14e4a174a588fb28c752/rcsb.workflow-0.16.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.16 2025-08-30T21:39:08,363 Skipping link: No binaries permitted for rcsb-workflow: https://files.pythonhosted.org/packages/13/41/360fbe2e9d98738569bb1669788e88fe2496ac2aa96c348b507d78ba5302/rcsb.workflow-0.17-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-workflow/) 2025-08-30T21:39:08,363 Found link https://files.pythonhosted.org/packages/f7/84/117d8d973206bad4f7f09427a0948cda7a52c81b46fc8c5c136d318ababe/rcsb.workflow-0.17.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.17 2025-08-30T21:39:08,364 Skipping link: No binaries permitted for rcsb-workflow: https://files.pythonhosted.org/packages/9f/2d/22fab9fdfc355a038ea5469206dba54d72350058ee260f628810d9d562de/rcsb.workflow-0.18-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-workflow/) 2025-08-30T21:39:08,364 Found link https://files.pythonhosted.org/packages/9f/de/e28f9b191c36c65c1c047f13222db60c9a22e4a564827a6b62bc46310aa4/rcsb.workflow-0.18.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.18 2025-08-30T21:39:08,365 Skipping link: No binaries permitted for rcsb-workflow: https://files.pythonhosted.org/packages/e9/f5/63a371d2bad0c8e7dcc5e9c6a9ef328495cb55611c224aab98997d3cccea/rcsb.workflow-0.19-py2.py3-none-any.whl (from https://pypi.org/simple/rcsb-workflow/) 2025-08-30T21:39:08,365 Found link https://files.pythonhosted.org/packages/96/e7/15b34e1266afd513f55ab9e38206b67a4f3b505385827211ce8244dceec3/rcsb.workflow-0.19.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.19 2025-08-30T21:39:08,366 Found link https://files.pythonhosted.org/packages/72/d7/0cc0e87ef7bb02f1d913c3322c1b0ad919d4c96432da9328c79922d63e41/rcsb.workflow-0.24.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.24 2025-08-30T21:39:08,367 Found link 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https://files.pythonhosted.org/packages/3e/25/cd2964043223eb759af7822046efb07a6bfd7076629d070034f92c2530f9/rcsb.workflow-0.34.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.34 2025-08-30T21:39:08,374 Found link https://files.pythonhosted.org/packages/31/b6/d56e884444570ba6b27f9bc990ea107760f7dbb50466ffefb77f21dd33ca/rcsb.workflow-0.35.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.35 2025-08-30T21:39:08,375 Found link https://files.pythonhosted.org/packages/52/92/1b314438799ed8bd6300d0be7dd03d2e16ed792abce55bc05a23f36608b1/rcsb.workflow-0.36.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.36 2025-08-30T21:39:08,375 Found link https://files.pythonhosted.org/packages/02/74/ca633488c03152fff2454f2304e9687626680f2856e1bc4802b19f536668/rcsb.workflow-0.37.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.37 2025-08-30T21:39:08,376 Found link https://files.pythonhosted.org/packages/fa/97/2b988fac338477a8a2b7b18703a7bcde60776b9764990276a41c17d40945/rcsb.workflow-0.38.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.38 2025-08-30T21:39:08,376 Found link https://files.pythonhosted.org/packages/19/79/c471f5d3efd5df300de1a34a66e12315b5d46dc72e30f2da9f6033209824/rcsb.workflow-0.39.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.39 2025-08-30T21:39:08,377 Found link https://files.pythonhosted.org/packages/b8/fb/710f1f8d97bb4444d315608b0dc5cffe16ec5b8144e7640389c9fe88f470/rcsb.workflow-0.40.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.40 2025-08-30T21:39:08,378 Found link https://files.pythonhosted.org/packages/26/39/030a8fe7429ad7beb26495df5efb8e46a003c6adc7c839c4646b142c4901/rcsb.workflow-0.41.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.41 2025-08-30T21:39:08,378 Found link https://files.pythonhosted.org/packages/b9/c3/3a12ae847a2c9b25e63731a021abc469c899fdefbc79d0efcd4b31b993d5/rcsb.workflow-0.42.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.42 2025-08-30T21:39:08,379 Found link https://files.pythonhosted.org/packages/38/43/fd5706cf2ed00c42c1f1d3078ac3c1b931b82ffbca7d41cdca296fd45df4/rcsb_workflow-0.43.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.43 2025-08-30T21:39:08,379 Found link https://files.pythonhosted.org/packages/7e/92/704d1de8467ed03ca9ad48752e590b583988d9498ca281b0e5efcb47fb6c/rcsb_workflow-0.44.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.44 2025-08-30T21:39:08,380 Found link https://files.pythonhosted.org/packages/6e/1c/3cccb3cd1e24e1a806347e1512a5170fc156414a3a70757372a3779d8f53/rcsb_workflow-0.45.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.45 2025-08-30T21:39:08,381 Found link https://files.pythonhosted.org/packages/f7/82/07272db3b851695019c8e4ee561326410caf6a625cd743d4017cddb4bbfe/rcsb_workflow-0.46.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.46 2025-08-30T21:39:08,381 Found link https://files.pythonhosted.org/packages/67/ba/977800fb227edf8fdcccb81d6fc2f34233cf26055202c1e91ba18742af19/rcsb_workflow-0.47.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.47 2025-08-30T21:39:08,382 Found link https://files.pythonhosted.org/packages/82/a8/8ee22802b00ee2c7cba6f4e725ad465001f6cc558a35e6d410ce81aef581/rcsb_workflow-0.48.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.48 2025-08-30T21:39:08,382 Found link https://files.pythonhosted.org/packages/6d/1f/633b0272c0b6417aa5f8be73903b866b1deb616b6f4d7564a3c614c0a84b/rcsb_workflow-0.49.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.49 2025-08-30T21:39:08,383 Found link https://files.pythonhosted.org/packages/80/bd/836b64ad2452a6c96b5ae31fac22079fa7081e27a7ac370747aef9dc448e/rcsb_workflow-0.50.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.50 2025-08-30T21:39:08,384 Found link https://files.pythonhosted.org/packages/24/4b/54aebde52046d97a766bf8e53d41be6a54c939fbbecf19f5091cfb410106/rcsb_workflow-0.51.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.51 2025-08-30T21:39:08,384 Found link https://files.pythonhosted.org/packages/8d/3c/11c205c6f583b87f0f82d9f449ca88e0f15fc26fb4fa9b86363ee481eac7/rcsb_workflow-0.52.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.52 2025-08-30T21:39:08,385 Found link https://files.pythonhosted.org/packages/aa/3f/1a26bdff8ab2aef5839fcccab0f3ce5e27e46660764dd8a1276cbbf3e111/rcsb_workflow-0.53.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.53 2025-08-30T21:39:08,385 Found link https://files.pythonhosted.org/packages/f5/9b/c27f5e9b2a3183d5b87731d8cb368669721ad60def6b261f2410e67ae75a/rcsb_workflow-0.54.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.54 2025-08-30T21:39:08,386 Found link https://files.pythonhosted.org/packages/3d/5a/bb1d98659d40d9ed9bd8b9947e8d94489333bcf501bff134e03cc83a4782/rcsb_workflow-0.55.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.55 2025-08-30T21:39:08,386 Found link https://files.pythonhosted.org/packages/60/6a/8d79c33c81564acc4fb99e2d614a7103978fd8023b74957208a4895b0feb/rcsb_workflow-0.56.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.56 2025-08-30T21:39:08,387 Found link https://files.pythonhosted.org/packages/92/15/a4340fd88050a6f11eed6f359bd468e0fa87fe628696986bd9a3e389c982/rcsb_workflow-0.57.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.57 2025-08-30T21:39:08,388 Found link https://files.pythonhosted.org/packages/28/be/8eca04af4129cb68fefc96cc9c79253285fb8aaae20f4f45c18fc23922fb/rcsb_workflow-0.58.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.58 2025-08-30T21:39:08,388 Found link https://files.pythonhosted.org/packages/37/c5/d27df93f8c3f6b83960402a2b5f37a088fef0179082a121194a7a82de58c/rcsb_workflow-0.59.tar.gz (from https://pypi.org/simple/rcsb-workflow/), version: 0.59 2025-08-30T21:39:08,389 Fetching project page and analyzing links: https://www.piwheels.org/simple/rcsb-workflow/ 2025-08-30T21:39:08,390 Getting page https://www.piwheels.org/simple/rcsb-workflow/ 2025-08-30T21:39:08,391 Found index url https://www.piwheels.org/simple/ 2025-08-30T21:39:08,558 Fetched page https://www.piwheels.org/simple/rcsb-workflow/ as text/html 2025-08-30T21:39:08,566 Skipping link: No binaries permitted for rcsb-workflow: 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2025-08-30T21:39:08,610 Given no hashes to check 1 links for project 'rcsb-workflow': discarding no candidates 2025-08-30T21:39:08,612 Collecting rcsb-workflow==0.58 2025-08-30T21:39:08,615 Created temporary directory: /tmp/pip-unpack-7bke_ifq 2025-08-30T21:39:09,018 Downloading rcsb_workflow-0.58.tar.gz (34 kB) 2025-08-30T21:39:09,111 Added rcsb-workflow==0.58 from https://files.pythonhosted.org/packages/28/be/8eca04af4129cb68fefc96cc9c79253285fb8aaae20f4f45c18fc23922fb/rcsb_workflow-0.58.tar.gz to build tracker '/tmp/pip-build-tracker-kb8r249v' 2025-08-30T21:39:09,112 Running setup.py (path:/tmp/pip-wheel-s5wjjm2f/rcsb-workflow_604cbf69a0ae41bb8d488591ae394579/setup.py) egg_info for package rcsb-workflow 2025-08-30T21:39:09,113 Created temporary directory: /tmp/pip-pip-egg-info-tia93ajm 2025-08-30T21:39:09,114 Preparing metadata (setup.py): started 2025-08-30T21:39:09,115 Running command python setup.py egg_info 2025-08-30T21:39:09,646 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-08-30T21:39:09,647 warnings.warn(msg) 2025-08-30T21:39:09,647 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-08-30T21:39:09,648 warnings.warn(msg) 2025-08-30T21:39:09,954 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-08-30T21:39:09,954 !! 2025-08-30T21:39:09,955 ******************************************************************************** 2025-08-30T21:39:09,956 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-08-30T21:39:09,957 License :: OSI Approved :: Apache Software License 2025-08-30T21:39:09,958 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-08-30T21:39:09,958 ******************************************************************************** 2025-08-30T21:39:09,959 !! 2025-08-30T21:39:09,960 self._finalize_license_expression() 2025-08-30T21:39:09,983 running egg_info 2025-08-30T21:39:10,011 creating /tmp/pip-pip-egg-info-tia93ajm/rcsb.workflow.egg-info 2025-08-30T21:39:10,012 writing /tmp/pip-pip-egg-info-tia93ajm/rcsb.workflow.egg-info/PKG-INFO 2025-08-30T21:39:10,017 writing dependency_links to /tmp/pip-pip-egg-info-tia93ajm/rcsb.workflow.egg-info/dependency_links.txt 2025-08-30T21:39:10,019 writing entry points to /tmp/pip-pip-egg-info-tia93ajm/rcsb.workflow.egg-info/entry_points.txt 2025-08-30T21:39:10,021 writing requirements to /tmp/pip-pip-egg-info-tia93ajm/rcsb.workflow.egg-info/requires.txt 2025-08-30T21:39:10,022 writing top-level names to /tmp/pip-pip-egg-info-tia93ajm/rcsb.workflow.egg-info/top_level.txt 2025-08-30T21:39:10,023 writing manifest file '/tmp/pip-pip-egg-info-tia93ajm/rcsb.workflow.egg-info/SOURCES.txt' 2025-08-30T21:39:10,126 reading manifest file '/tmp/pip-pip-egg-info-tia93ajm/rcsb.workflow.egg-info/SOURCES.txt' 2025-08-30T21:39:10,127 reading manifest template 'MANIFEST.in' 2025-08-30T21:39:10,128 adding license file 'LICENSE' 2025-08-30T21:39:10,132 writing manifest file '/tmp/pip-pip-egg-info-tia93ajm/rcsb.workflow.egg-info/SOURCES.txt' 2025-08-30T21:39:10,237 Preparing metadata (setup.py): finished with status 'done' 2025-08-30T21:39:10,241 Source in /tmp/pip-wheel-s5wjjm2f/rcsb-workflow_604cbf69a0ae41bb8d488591ae394579 has version 0.58, which satisfies requirement rcsb-workflow==0.58 from https://files.pythonhosted.org/packages/28/be/8eca04af4129cb68fefc96cc9c79253285fb8aaae20f4f45c18fc23922fb/rcsb_workflow-0.58.tar.gz 2025-08-30T21:39:10,242 Removed rcsb-workflow==0.58 from https://files.pythonhosted.org/packages/28/be/8eca04af4129cb68fefc96cc9c79253285fb8aaae20f4f45c18fc23922fb/rcsb_workflow-0.58.tar.gz from build tracker '/tmp/pip-build-tracker-kb8r249v' 2025-08-30T21:39:10,250 Created temporary directory: /tmp/pip-unpack-xk32qo0n 2025-08-30T21:39:10,251 Created temporary directory: /tmp/pip-unpack-vwfu8p4s 2025-08-30T21:39:10,251 Building wheels for collected packages: rcsb-workflow 2025-08-30T21:39:10,255 Created temporary directory: /tmp/pip-wheel-haegfe2t 2025-08-30T21:39:10,256 DEPRECATION: Building 'rcsb-workflow' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'rcsb-workflow'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-08-30T21:39:10,257 Building wheel for rcsb-workflow (setup.py): started 2025-08-30T21:39:10,259 Destination directory: /tmp/pip-wheel-haegfe2t 2025-08-30T21:39:10,259 Running command python setup.py bdist_wheel 2025-08-30T21:39:10,800 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-08-30T21:39:10,801 warnings.warn(msg) 2025-08-30T21:39:10,801 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' 2025-08-30T21:39:10,801 warnings.warn(msg) 2025-08-30T21:39:11,095 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-08-30T21:39:11,095 !! 2025-08-30T21:39:11,096 ******************************************************************************** 2025-08-30T21:39:11,096 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-08-30T21:39:11,097 License :: OSI Approved :: Apache Software License 2025-08-30T21:39:11,098 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-08-30T21:39:11,099 ******************************************************************************** 2025-08-30T21:39:11,100 !! 2025-08-30T21:39:11,100 self._finalize_license_expression() 2025-08-30T21:39:11,101 running bdist_wheel 2025-08-30T21:39:11,176 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:135: SetuptoolsDeprecationWarning: bdist_wheel.universal is deprecated 2025-08-30T21:39:11,176 !! 2025-08-30T21:39:11,177 ******************************************************************************** 2025-08-30T21:39:11,178 With Python 2.7 end-of-life, support for building universal wheels 2025-08-30T21:39:11,178 (i.e., wheels that support both Python 2 and Python 3) 2025-08-30T21:39:11,179 is being obviated. 2025-08-30T21:39:11,179 Please discontinue using this option, or if you still need it, 2025-08-30T21:39:11,180 file an issue with pypa/setuptools describing your use case. 2025-08-30T21:39:11,180 ******************************************************************************** 2025-08-30T21:39:11,181 !! 2025-08-30T21:39:11,182 self.finalize_options() 2025-08-30T21:39:11,232 running build 2025-08-30T21:39:11,233 running build_py 2025-08-30T21:39:11,263 creating build/lib/rcsb 2025-08-30T21:39:11,265 copying rcsb/__init__.py -> build/lib/rcsb 2025-08-30T21:39:11,267 creating build/lib/rcsb/workflow 2025-08-30T21:39:11,269 copying rcsb/workflow/__init__.py -> build/lib/rcsb/workflow 2025-08-30T21:39:11,271 creating build/lib/rcsb/workflow/bcif 2025-08-30T21:39:11,272 copying rcsb/workflow/bcif/task_functions.py -> build/lib/rcsb/workflow/bcif 2025-08-30T21:39:11,275 copying rcsb/workflow/bcif/__init__.py -> build/lib/rcsb/workflow/bcif 2025-08-30T21:39:11,277 creating build/lib/rcsb/workflow/cli 2025-08-30T21:39:11,279 copying rcsb/workflow/cli/ExDbExec.py -> build/lib/rcsb/workflow/cli 2025-08-30T21:39:11,281 copying rcsb/workflow/cli/BcifExec.py -> build/lib/rcsb/workflow/cli 2025-08-30T21:39:11,284 copying rcsb/workflow/cli/ImgExec.py -> build/lib/rcsb/workflow/cli 2025-08-30T21:39:11,285 copying rcsb/workflow/cli/__init__.py -> build/lib/rcsb/workflow/cli 2025-08-30T21:39:11,288 creating build/lib/rcsb/workflow/targets 2025-08-30T21:39:11,288 copying rcsb/workflow/targets/ProteinTargetSequenceWorkflow.py -> build/lib/rcsb/workflow/targets 2025-08-30T21:39:11,291 copying rcsb/workflow/targets/__init__.py -> build/lib/rcsb/workflow/targets 2025-08-30T21:39:11,293 copying rcsb/workflow/targets/ProteinTargetSequenceExecutionWorkflow.py -> build/lib/rcsb/workflow/targets 2025-08-30T21:39:11,296 creating build/lib/rcsb/workflow/chem 2025-08-30T21:39:11,297 copying rcsb/workflow/chem/ChemCompImageWorkflow.py -> build/lib/rcsb/workflow/chem 2025-08-30T21:39:11,299 copying rcsb/workflow/chem/ChemCompFileWorkflow.py -> build/lib/rcsb/workflow/chem 2025-08-30T21:39:11,301 copying rcsb/workflow/chem/ChemCompSearchIndexWorkflow.py -> build/lib/rcsb/workflow/chem 2025-08-30T21:39:11,303 copying rcsb/workflow/chem/__init__.py -> build/lib/rcsb/workflow/chem 2025-08-30T21:39:11,305 creating build/lib/rcsb/workflow/wuw 2025-08-30T21:39:11,306 copying rcsb/workflow/wuw/PdbCsmImageWorkflow.py -> build/lib/rcsb/workflow/wuw 2025-08-30T21:39:11,308 copying rcsb/workflow/wuw/WuwUtils.py -> build/lib/rcsb/workflow/wuw 2025-08-30T21:39:11,310 copying rcsb/workflow/wuw/ExDbWorkflow.py -> build/lib/rcsb/workflow/wuw 2025-08-30T21:39:11,313 copying rcsb/workflow/wuw/__init__.py -> build/lib/rcsb/workflow/wuw 2025-08-30T21:39:11,314 copying rcsb/workflow/wuw/BcifWorkflow.py -> build/lib/rcsb/workflow/wuw 2025-08-30T21:39:11,355 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-08-30T21:39:11,355 !! 2025-08-30T21:39:11,356 ******************************************************************************** 2025-08-30T21:39:11,357 Please avoid running ``setup.py`` directly. 2025-08-30T21:39:11,357 Instead, use pypa/build, pypa/installer or other 2025-08-30T21:39:11,358 standards-based tools. 2025-08-30T21:39:11,359 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-08-30T21:39:11,359 or your builds will no longer be supported. 2025-08-30T21:39:11,360 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-08-30T21:39:11,361 ******************************************************************************** 2025-08-30T21:39:11,362 !! 2025-08-30T21:39:11,362 self.initialize_options() 2025-08-30T21:39:11,382 installing to build/bdist.linux-armv7l/wheel 2025-08-30T21:39:11,382 running install 2025-08-30T21:39:11,406 running install_lib 2025-08-30T21:39:11,433 creating build/bdist.linux-armv7l/wheel 2025-08-30T21:39:11,435 creating build/bdist.linux-armv7l/wheel/rcsb 2025-08-30T21:39:11,436 creating build/bdist.linux-armv7l/wheel/rcsb/workflow 2025-08-30T21:39:11,438 creating build/bdist.linux-armv7l/wheel/rcsb/workflow/bcif 2025-08-30T21:39:11,439 copying build/lib/rcsb/workflow/bcif/task_functions.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/bcif 2025-08-30T21:39:11,442 copying build/lib/rcsb/workflow/bcif/__init__.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/bcif 2025-08-30T21:39:11,444 creating build/bdist.linux-armv7l/wheel/rcsb/workflow/cli 2025-08-30T21:39:11,445 copying build/lib/rcsb/workflow/cli/ExDbExec.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/cli 2025-08-30T21:39:11,447 copying build/lib/rcsb/workflow/cli/BcifExec.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/cli 2025-08-30T21:39:11,449 copying build/lib/rcsb/workflow/cli/ImgExec.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/cli 2025-08-30T21:39:11,451 copying build/lib/rcsb/workflow/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/cli 2025-08-30T21:39:11,453 creating build/bdist.linux-armv7l/wheel/rcsb/workflow/targets 2025-08-30T21:39:11,454 copying build/lib/rcsb/workflow/targets/ProteinTargetSequenceWorkflow.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/targets 2025-08-30T21:39:11,457 copying build/lib/rcsb/workflow/targets/__init__.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/targets 2025-08-30T21:39:11,459 copying build/lib/rcsb/workflow/targets/ProteinTargetSequenceExecutionWorkflow.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/targets 2025-08-30T21:39:11,462 creating build/bdist.linux-armv7l/wheel/rcsb/workflow/chem 2025-08-30T21:39:11,463 copying build/lib/rcsb/workflow/chem/ChemCompImageWorkflow.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/chem 2025-08-30T21:39:11,465 copying build/lib/rcsb/workflow/chem/ChemCompFileWorkflow.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/chem 2025-08-30T21:39:11,467 copying build/lib/rcsb/workflow/chem/ChemCompSearchIndexWorkflow.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/chem 2025-08-30T21:39:11,469 copying build/lib/rcsb/workflow/chem/__init__.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/chem 2025-08-30T21:39:11,471 creating build/bdist.linux-armv7l/wheel/rcsb/workflow/wuw 2025-08-30T21:39:11,472 copying build/lib/rcsb/workflow/wuw/PdbCsmImageWorkflow.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/wuw 2025-08-30T21:39:11,474 copying build/lib/rcsb/workflow/wuw/WuwUtils.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/wuw 2025-08-30T21:39:11,476 copying build/lib/rcsb/workflow/wuw/ExDbWorkflow.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/wuw 2025-08-30T21:39:11,479 copying build/lib/rcsb/workflow/wuw/__init__.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/wuw 2025-08-30T21:39:11,480 copying build/lib/rcsb/workflow/wuw/BcifWorkflow.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow/wuw 2025-08-30T21:39:11,482 copying build/lib/rcsb/workflow/__init__.py -> build/bdist.linux-armv7l/wheel/./rcsb/workflow 2025-08-30T21:39:11,484 copying build/lib/rcsb/__init__.py -> build/bdist.linux-armv7l/wheel/./rcsb 2025-08-30T21:39:11,485 running install_egg_info 2025-08-30T21:39:11,517 running egg_info 2025-08-30T21:39:11,544 writing rcsb.workflow.egg-info/PKG-INFO 2025-08-30T21:39:11,548 writing dependency_links to rcsb.workflow.egg-info/dependency_links.txt 2025-08-30T21:39:11,550 writing entry points to rcsb.workflow.egg-info/entry_points.txt 2025-08-30T21:39:11,551 writing requirements to rcsb.workflow.egg-info/requires.txt 2025-08-30T21:39:11,553 writing top-level names to rcsb.workflow.egg-info/top_level.txt 2025-08-30T21:39:11,594 reading manifest file 'rcsb.workflow.egg-info/SOURCES.txt' 2025-08-30T21:39:11,597 reading manifest template 'MANIFEST.in' 2025-08-30T21:39:11,598 adding license file 'LICENSE' 2025-08-30T21:39:11,602 writing manifest file 'rcsb.workflow.egg-info/SOURCES.txt' 2025-08-30T21:39:11,603 Copying rcsb.workflow.egg-info to build/bdist.linux-armv7l/wheel/./rcsb.workflow-0.58-py3.11.egg-info 2025-08-30T21:39:11,615 running install_scripts 2025-08-30T21:39:11,628 creating build/bdist.linux-armv7l/wheel/rcsb_workflow-0.58.dist-info/WHEEL 2025-08-30T21:39:11,630 creating '/tmp/pip-wheel-haegfe2t/rcsb_workflow-0.58-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-08-30T21:39:11,632 adding 'rcsb/__init__.py' 2025-08-30T21:39:11,634 adding 'rcsb/workflow/__init__.py' 2025-08-30T21:39:11,635 adding 'rcsb/workflow/bcif/__init__.py' 2025-08-30T21:39:11,637 adding 'rcsb/workflow/bcif/task_functions.py' 2025-08-30T21:39:11,639 adding 'rcsb/workflow/chem/ChemCompFileWorkflow.py' 2025-08-30T21:39:11,641 adding 'rcsb/workflow/chem/ChemCompImageWorkflow.py' 2025-08-30T21:39:11,642 adding 'rcsb/workflow/chem/ChemCompSearchIndexWorkflow.py' 2025-08-30T21:39:11,644 adding 'rcsb/workflow/chem/__init__.py' 2025-08-30T21:39:11,646 adding 'rcsb/workflow/cli/BcifExec.py' 2025-08-30T21:39:11,648 adding 'rcsb/workflow/cli/ExDbExec.py' 2025-08-30T21:39:11,649 adding 'rcsb/workflow/cli/ImgExec.py' 2025-08-30T21:39:11,651 adding 'rcsb/workflow/cli/__init__.py' 2025-08-30T21:39:11,654 adding 'rcsb/workflow/targets/ProteinTargetSequenceExecutionWorkflow.py' 2025-08-30T21:39:11,657 adding 'rcsb/workflow/targets/ProteinTargetSequenceWorkflow.py' 2025-08-30T21:39:11,658 adding 'rcsb/workflow/targets/__init__.py' 2025-08-30T21:39:11,660 adding 'rcsb/workflow/wuw/BcifWorkflow.py' 2025-08-30T21:39:11,662 adding 'rcsb/workflow/wuw/ExDbWorkflow.py' 2025-08-30T21:39:11,665 adding 'rcsb/workflow/wuw/PdbCsmImageWorkflow.py' 2025-08-30T21:39:11,666 adding 'rcsb/workflow/wuw/WuwUtils.py' 2025-08-30T21:39:11,667 adding 'rcsb/workflow/wuw/__init__.py' 2025-08-30T21:39:11,671 adding 'rcsb_workflow-0.58.dist-info/licenses/LICENSE' 2025-08-30T21:39:11,672 adding 'rcsb_workflow-0.58.dist-info/METADATA' 2025-08-30T21:39:11,674 adding 'rcsb_workflow-0.58.dist-info/WHEEL' 2025-08-30T21:39:11,674 adding 'rcsb_workflow-0.58.dist-info/entry_points.txt' 2025-08-30T21:39:11,675 adding 'rcsb_workflow-0.58.dist-info/top_level.txt' 2025-08-30T21:39:11,676 adding 'rcsb_workflow-0.58.dist-info/RECORD' 2025-08-30T21:39:11,679 removing build/bdist.linux-armv7l/wheel 2025-08-30T21:39:11,810 Building wheel for rcsb-workflow (setup.py): finished with status 'done' 2025-08-30T21:39:11,812 Created wheel for rcsb-workflow: filename=rcsb_workflow-0.58-py2.py3-none-any.whl size=39657 sha256=d3a8f4ff9010ed99a259c60831ddd9f3f2ade770299eff945f806e3f28576952 2025-08-30T21:39:11,814 Stored in directory: /tmp/pip-ephem-wheel-cache-xwon7g32/wheels/ca/ef/c3/fa3a542fc88244494670d431e86716cb1fcc9c283e54302b47 2025-08-30T21:39:11,825 Successfully built rcsb-workflow 2025-08-30T21:39:11,830 Removed build tracker: '/tmp/pip-build-tracker-kb8r249v'