2025-08-30T22:27:15,637 Created temporary directory: /tmp/pip-build-tracker-lnr_xagx 2025-08-30T22:27:15,638 Initialized build tracking at /tmp/pip-build-tracker-lnr_xagx 2025-08-30T22:27:15,639 Created build tracker: /tmp/pip-build-tracker-lnr_xagx 2025-08-30T22:27:15,639 Entered build tracker: /tmp/pip-build-tracker-lnr_xagx 2025-08-30T22:27:15,640 Created temporary directory: /tmp/pip-wheel-4vncdbxt 2025-08-30T22:27:15,644 Created temporary directory: /tmp/pip-ephem-wheel-cache-5muif25b 2025-08-30T22:27:15,695 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-08-30T22:27:15,697 2 location(s) to search for versions of pancg: 2025-08-30T22:27:15,697 * https://pypi.org/simple/pancg/ 2025-08-30T22:27:15,697 * https://www.piwheels.org/simple/pancg/ 2025-08-30T22:27:15,698 Fetching project page and analyzing links: https://pypi.org/simple/pancg/ 2025-08-30T22:27:15,699 Getting page https://pypi.org/simple/pancg/ 2025-08-30T22:27:15,701 Found index url https://pypi.org/simple/ 2025-08-30T22:27:15,855 Fetched page https://pypi.org/simple/pancg/ as application/vnd.pypi.simple.v1+json 2025-08-30T22:27:15,858 Skipping link: No binaries permitted for pancg: https://files.pythonhosted.org/packages/a2/45/e3fd5cd4a56e69b291ff5e519bf346b77609742bd8ef66ae61dce7961871/panCG-0.0.1-py3-none-any.whl (from https://pypi.org/simple/pancg/) 2025-08-30T22:27:15,858 Found link https://files.pythonhosted.org/packages/f6/bb/7c1262dc432abdbdfd2aba18ca30abd9c9ac4aa8a218d96cdde85429cfd1/panCG-0.0.1.tar.gz (from https://pypi.org/simple/pancg/), version: 0.0.1 2025-08-30T22:27:15,859 Skipping link: No binaries permitted for pancg: https://files.pythonhosted.org/packages/0c/4d/fc54b1f1f6ae673df2b9561772e2138a0b0029c3f86e7012433ac457b1aa/pancg-0.0.1-py3-none-any.whl (from https://pypi.org/simple/pancg/) 2025-08-30T22:27:15,860 Skipping link: No binaries permitted for pancg: https://files.pythonhosted.org/packages/09/3d/b4ed10d1d0a6ad788488a4433fcf59dd558399c8a6183b3ae8ee89cebc87/panCG-0.0.2-py3-none-any.whl (from https://pypi.org/simple/pancg/) 2025-08-30T22:27:15,860 Found link https://files.pythonhosted.org/packages/65/1d/eab825ad54372ffee87f0d09edc56e8943bf074c0905345c89c8015fa87e/pancg-0.0.2.tar.gz (from https://pypi.org/simple/pancg/), version: 0.0.2 2025-08-30T22:27:15,861 Skipping link: No binaries permitted for pancg: https://files.pythonhosted.org/packages/16/24/a80c172885b2e2881f864c35835b7f0f49d185fb9fc052381b0d0284c805/panCG-0.0.3-py3-none-any.whl (from https://pypi.org/simple/pancg/) 2025-08-30T22:27:15,862 Found link https://files.pythonhosted.org/packages/14/dc/5af263c2f114f390b318cef7d429678753528e03484c0dd833c1d90526de/pancg-0.0.3.tar.gz (from https://pypi.org/simple/pancg/), version: 0.0.3 2025-08-30T22:27:15,863 Skipping link: No binaries permitted for pancg: https://files.pythonhosted.org/packages/54/ca/c32ec74e3a36f89c15c3e93ceddfac96dab5dfddd53271b590ac7646f634/panCG-0.0.4-py3-none-any.whl (from https://pypi.org/simple/pancg/) 2025-08-30T22:27:15,863 Found link https://files.pythonhosted.org/packages/62/fa/65008f0f404edefd52eaa52babfa4fff9874cb06c9eaefe4c74f14822cbf/pancg-0.0.4.tar.gz (from https://pypi.org/simple/pancg/), version: 0.0.4 2025-08-30T22:27:15,864 Fetching project page and analyzing links: https://www.piwheels.org/simple/pancg/ 2025-08-30T22:27:15,865 Getting page https://www.piwheels.org/simple/pancg/ 2025-08-30T22:27:15,866 Found index url https://www.piwheels.org/simple/ 2025-08-30T22:27:16,042 Fetched page https://www.piwheels.org/simple/pancg/ as text/html 2025-08-30T22:27:16,044 Skipping link: No binaries permitted for pancg: https://www.piwheels.org/simple/pancg/pancg-0.0.1-py3-none-any.whl#sha256=19103c1af11e38ce849aae162f58e23ac16f541dfc384c48dbfdb7c092fb65ce (from https://www.piwheels.org/simple/pancg/) 2025-08-30T22:27:16,045 Skipping link: not a file: https://www.piwheels.org/simple/pancg/ 2025-08-30T22:27:16,045 Skipping link: not a file: https://pypi.org/simple/pancg/ 2025-08-30T22:27:16,065 Given no hashes to check 1 links for project 'pancg': discarding no candidates 2025-08-30T22:27:16,067 Collecting pancg==0.0.2 2025-08-30T22:27:16,069 Created temporary directory: /tmp/pip-unpack-_y4ytue9 2025-08-30T22:27:16,300 Downloading pancg-0.0.2.tar.gz (70 kB) 2025-08-30T22:27:16,486 Added pancg==0.0.2 from https://files.pythonhosted.org/packages/65/1d/eab825ad54372ffee87f0d09edc56e8943bf074c0905345c89c8015fa87e/pancg-0.0.2.tar.gz to build tracker '/tmp/pip-build-tracker-lnr_xagx' 2025-08-30T22:27:16,489 Running setup.py (path:/tmp/pip-wheel-4vncdbxt/pancg_4f23c83ad79545039319ee21ea3f7e2e/setup.py) egg_info for package pancg 2025-08-30T22:27:16,490 Created temporary directory: /tmp/pip-pip-egg-info-nidebc6v 2025-08-30T22:27:16,490 Preparing metadata (setup.py): started 2025-08-30T22:27:16,492 Running command python setup.py egg_info 2025-08-30T22:27:17,419 running egg_info 2025-08-30T22:27:17,447 creating /tmp/pip-pip-egg-info-nidebc6v/panCG.egg-info 2025-08-30T22:27:17,448 writing /tmp/pip-pip-egg-info-nidebc6v/panCG.egg-info/PKG-INFO 2025-08-30T22:27:17,452 writing dependency_links to /tmp/pip-pip-egg-info-nidebc6v/panCG.egg-info/dependency_links.txt 2025-08-30T22:27:17,454 writing entry points to /tmp/pip-pip-egg-info-nidebc6v/panCG.egg-info/entry_points.txt 2025-08-30T22:27:17,456 writing requirements to /tmp/pip-pip-egg-info-nidebc6v/panCG.egg-info/requires.txt 2025-08-30T22:27:17,457 writing top-level names to /tmp/pip-pip-egg-info-nidebc6v/panCG.egg-info/top_level.txt 2025-08-30T22:27:17,458 writing manifest file '/tmp/pip-pip-egg-info-nidebc6v/panCG.egg-info/SOURCES.txt' 2025-08-30T22:27:17,581 reading manifest file '/tmp/pip-pip-egg-info-nidebc6v/panCG.egg-info/SOURCES.txt' 2025-08-30T22:27:17,582 adding license file 'LICENSE' 2025-08-30T22:27:17,586 writing manifest file '/tmp/pip-pip-egg-info-nidebc6v/panCG.egg-info/SOURCES.txt' 2025-08-30T22:27:17,692 Preparing metadata (setup.py): finished with status 'done' 2025-08-30T22:27:17,697 Source in /tmp/pip-wheel-4vncdbxt/pancg_4f23c83ad79545039319ee21ea3f7e2e has version 0.0.2, which satisfies requirement pancg==0.0.2 from https://files.pythonhosted.org/packages/65/1d/eab825ad54372ffee87f0d09edc56e8943bf074c0905345c89c8015fa87e/pancg-0.0.2.tar.gz 2025-08-30T22:27:17,697 Removed pancg==0.0.2 from https://files.pythonhosted.org/packages/65/1d/eab825ad54372ffee87f0d09edc56e8943bf074c0905345c89c8015fa87e/pancg-0.0.2.tar.gz from build tracker '/tmp/pip-build-tracker-lnr_xagx' 2025-08-30T22:27:17,706 Created temporary directory: /tmp/pip-unpack-wema49ma 2025-08-30T22:27:17,707 Created temporary directory: /tmp/pip-unpack-aoy3ceo2 2025-08-30T22:27:17,707 Building wheels for collected packages: pancg 2025-08-30T22:27:17,712 Created temporary directory: /tmp/pip-wheel-wum9nfsm 2025-08-30T22:27:17,713 DEPRECATION: Building 'pancg' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'pancg'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2025-08-30T22:27:17,714 Building wheel for pancg (setup.py): started 2025-08-30T22:27:17,716 Destination directory: /tmp/pip-wheel-wum9nfsm 2025-08-30T22:27:17,716 Running command python setup.py bdist_wheel 2025-08-30T22:27:18,561 running bdist_wheel 2025-08-30T22:27:18,694 running build 2025-08-30T22:27:18,695 running build_py 2025-08-30T22:27:18,726 creating build/lib/panCG 2025-08-30T22:27:18,728 copying panCG/panCG.py -> build/lib/panCG 2025-08-30T22:27:18,731 copying panCG/__init__.py -> build/lib/panCG 2025-08-30T22:27:18,734 creating build/lib/panCG/bin 2025-08-30T22:27:18,736 copying panCG/bin/cnsMapMerge.py -> build/lib/panCG/bin 2025-08-30T22:27:18,738 copying panCG/bin/callCNS.py -> build/lib/panCG/bin 2025-08-30T22:27:18,741 copying panCG/bin/genePAV.py -> build/lib/panCG/bin 2025-08-30T22:27:18,743 copying panCG/bin/__init__.py -> build/lib/panCG/bin 2025-08-30T22:27:18,746 copying panCG/bin/pangeneAssign.py -> build/lib/panCG/bin 2025-08-30T22:27:18,748 copying panCG/bin/pancnsMerge.py -> build/lib/panCG/bin 2025-08-30T22:27:18,751 copying panCG/bin/geneClustering.py -> build/lib/panCG/bin 2025-08-30T22:27:18,753 copying panCG/bin/CnsGeneLink.py -> build/lib/panCG/bin 2025-08-30T22:27:18,755 copying panCG/bin/pancnsSort.py -> build/lib/panCG/bin 2025-08-30T22:27:18,757 copying panCG/bin/cnsRecall.py -> build/lib/panCG/bin 2025-08-30T22:27:18,760 copying panCG/bin/geneLineageSpeciSyn.py -> build/lib/panCG/bin 2025-08-30T22:27:18,763 copying panCG/bin/geneMapMerge.py -> build/lib/panCG/bin 2025-08-30T22:27:18,765 copying panCG/bin/pancnsAssign.py -> build/lib/panCG/bin 2025-08-30T22:27:18,767 copying panCG/bin/cnsClustering.py -> build/lib/panCG/bin 2025-08-30T22:27:18,770 copying panCG/bin/cnsLineageSpeciSyn.py -> build/lib/panCG/bin 2025-08-30T22:27:18,772 copying panCG/bin/CE_RmCDS_to_CNS.py -> build/lib/panCG/bin 2025-08-30T22:27:18,774 copying panCG/bin/CnsSyntenyNet.py -> build/lib/panCG/bin 2025-08-30T22:27:18,776 copying panCG/bin/CEs_identification.py -> build/lib/panCG/bin 2025-08-30T22:27:18,778 copying panCG/bin/paralogs.py -> build/lib/panCG/bin 2025-08-30T22:27:18,781 creating build/lib/panCG/lib 2025-08-30T22:27:18,782 copying panCG/lib/cns_recall.py -> build/lib/panCG/lib 2025-08-30T22:27:18,785 copying panCG/lib/CPM.py -> build/lib/panCG/lib 2025-08-30T22:27:18,787 copying panCG/lib/__init__.py -> build/lib/panCG/lib 2025-08-30T22:27:18,789 copying panCG/lib/info.py -> build/lib/panCG/lib 2025-08-30T22:27:18,791 copying panCG/lib/CnsGeneLink.py -> build/lib/panCG/lib 2025-08-30T22:27:18,793 copying panCG/lib/LineageSpecicSynteny.py -> build/lib/panCG/lib 2025-08-30T22:27:18,795 copying panCG/lib/CnsCall.py -> build/lib/panCG/lib 2025-08-30T22:27:18,798 copying panCG/lib/base.py -> build/lib/panCG/lib 2025-08-30T22:27:18,800 copying panCG/lib/PanGeneIndex.py -> build/lib/panCG/lib 2025-08-30T22:27:18,803 copying panCG/lib/PhySynNet.py -> build/lib/panCG/lib 2025-08-30T22:27:18,806 copying panCG/lib/PanCnsIndex.py -> build/lib/panCG/lib 2025-08-30T22:27:18,809 copying panCG/lib/indexAssign.py -> build/lib/panCG/lib 2025-08-30T22:27:18,812 copying panCG/lib/PanCnsFilter.py -> build/lib/panCG/lib 2025-08-30T22:27:18,814 copying panCG/lib/sqliteDatabase.py -> build/lib/panCG/lib 2025-08-30T22:27:18,821 running build_scripts 2025-08-30T22:27:18,821 creating build/scripts-3.11 2025-08-30T22:27:18,823 copying panCG/scripts/CNS.anno.R -> build/scripts-3.11 2025-08-30T22:27:18,825 changing mode of build/scripts-3.11/CNS.anno.R from 644 to 755 2025-08-30T22:27:18,855 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-08-30T22:27:18,855 !! 2025-08-30T22:27:18,857 ******************************************************************************** 2025-08-30T22:27:18,857 Please avoid running ``setup.py`` directly. 2025-08-30T22:27:18,858 Instead, use pypa/build, pypa/installer or other 2025-08-30T22:27:18,858 standards-based tools. 2025-08-30T22:27:18,859 By 2025-Oct-31, you need to update your project and remove deprecated calls 2025-08-30T22:27:18,860 or your builds will no longer be supported. 2025-08-30T22:27:18,861 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-08-30T22:27:18,861 ******************************************************************************** 2025-08-30T22:27:18,863 !! 2025-08-30T22:27:18,863 self.initialize_options() 2025-08-30T22:27:18,884 installing to build/bdist.linux-armv7l/wheel 2025-08-30T22:27:18,884 running install 2025-08-30T22:27:18,910 running install_lib 2025-08-30T22:27:18,936 creating build/bdist.linux-armv7l/wheel 2025-08-30T22:27:18,938 creating build/bdist.linux-armv7l/wheel/panCG 2025-08-30T22:27:18,940 copying build/lib/panCG/panCG.py -> build/bdist.linux-armv7l/wheel/./panCG 2025-08-30T22:27:18,943 copying build/lib/panCG/__init__.py -> build/bdist.linux-armv7l/wheel/./panCG 2025-08-30T22:27:18,945 creating build/bdist.linux-armv7l/wheel/panCG/bin 2025-08-30T22:27:18,946 copying build/lib/panCG/bin/cnsMapMerge.py -> build/bdist.linux-armv7l/wheel/./panCG/bin 2025-08-30T22:27:18,948 copying build/lib/panCG/bin/callCNS.py -> build/bdist.linux-armv7l/wheel/./panCG/bin 2025-08-30T22:27:18,951 copying build/lib/panCG/bin/genePAV.py -> build/bdist.linux-armv7l/wheel/./panCG/bin 2025-08-30T22:27:18,953 copying build/lib/panCG/bin/__init__.py -> build/bdist.linux-armv7l/wheel/./panCG/bin 2025-08-30T22:27:18,954 copying build/lib/panCG/bin/pangeneAssign.py -> build/bdist.linux-armv7l/wheel/./panCG/bin 2025-08-30T22:27:18,957 copying build/lib/panCG/bin/pancnsMerge.py -> build/bdist.linux-armv7l/wheel/./panCG/bin 2025-08-30T22:27:18,959 copying build/lib/panCG/bin/geneClustering.py -> build/bdist.linux-armv7l/wheel/./panCG/bin 2025-08-30T22:27:18,961 copying build/lib/panCG/bin/CnsGeneLink.py -> build/bdist.linux-armv7l/wheel/./panCG/bin 2025-08-30T22:27:18,963 copying build/lib/panCG/bin/pancnsSort.py -> build/bdist.linux-armv7l/wheel/./panCG/bin 2025-08-30T22:27:18,965 copying build/lib/panCG/bin/cnsRecall.py -> build/bdist.linux-armv7l/wheel/./panCG/bin 2025-08-30T22:27:18,967 copying build/lib/panCG/bin/geneLineageSpeciSyn.py -> build/bdist.linux-armv7l/wheel/./panCG/bin 2025-08-30T22:27:18,970 copying build/lib/panCG/bin/geneMapMerge.py -> build/bdist.linux-armv7l/wheel/./panCG/bin 2025-08-30T22:27:18,972 copying build/lib/panCG/bin/pancnsAssign.py -> build/bdist.linux-armv7l/wheel/./panCG/bin 2025-08-30T22:27:18,975 copying build/lib/panCG/bin/cnsClustering.py -> build/bdist.linux-armv7l/wheel/./panCG/bin 2025-08-30T22:27:18,977 copying build/lib/panCG/bin/cnsLineageSpeciSyn.py -> build/bdist.linux-armv7l/wheel/./panCG/bin 2025-08-30T22:27:18,979 copying build/lib/panCG/bin/CE_RmCDS_to_CNS.py -> build/bdist.linux-armv7l/wheel/./panCG/bin 2025-08-30T22:27:18,981 copying build/lib/panCG/bin/CnsSyntenyNet.py -> build/bdist.linux-armv7l/wheel/./panCG/bin 2025-08-30T22:27:18,983 copying build/lib/panCG/bin/CEs_identification.py -> build/bdist.linux-armv7l/wheel/./panCG/bin 2025-08-30T22:27:18,986 copying build/lib/panCG/bin/paralogs.py -> build/bdist.linux-armv7l/wheel/./panCG/bin 2025-08-30T22:27:18,989 creating build/bdist.linux-armv7l/wheel/panCG/lib 2025-08-30T22:27:18,990 copying build/lib/panCG/lib/cns_recall.py -> build/bdist.linux-armv7l/wheel/./panCG/lib 2025-08-30T22:27:18,993 copying build/lib/panCG/lib/CPM.py -> build/bdist.linux-armv7l/wheel/./panCG/lib 2025-08-30T22:27:18,996 copying build/lib/panCG/lib/__init__.py -> build/bdist.linux-armv7l/wheel/./panCG/lib 2025-08-30T22:27:18,998 copying build/lib/panCG/lib/info.py -> build/bdist.linux-armv7l/wheel/./panCG/lib 2025-08-30T22:27:19,000 copying build/lib/panCG/lib/CnsGeneLink.py -> build/bdist.linux-armv7l/wheel/./panCG/lib 2025-08-30T22:27:19,002 copying build/lib/panCG/lib/LineageSpecicSynteny.py -> build/bdist.linux-armv7l/wheel/./panCG/lib 2025-08-30T22:27:19,005 copying build/lib/panCG/lib/CnsCall.py -> build/bdist.linux-armv7l/wheel/./panCG/lib 2025-08-30T22:27:19,007 copying build/lib/panCG/lib/base.py -> build/bdist.linux-armv7l/wheel/./panCG/lib 2025-08-30T22:27:19,010 copying build/lib/panCG/lib/PanGeneIndex.py -> build/bdist.linux-armv7l/wheel/./panCG/lib 2025-08-30T22:27:19,013 copying build/lib/panCG/lib/PhySynNet.py -> build/bdist.linux-armv7l/wheel/./panCG/lib 2025-08-30T22:27:19,016 copying build/lib/panCG/lib/PanCnsIndex.py -> build/bdist.linux-armv7l/wheel/./panCG/lib 2025-08-30T22:27:19,019 copying build/lib/panCG/lib/indexAssign.py -> build/bdist.linux-armv7l/wheel/./panCG/lib 2025-08-30T22:27:19,022 copying build/lib/panCG/lib/PanCnsFilter.py -> build/bdist.linux-armv7l/wheel/./panCG/lib 2025-08-30T22:27:19,024 copying build/lib/panCG/lib/sqliteDatabase.py -> build/bdist.linux-armv7l/wheel/./panCG/lib 2025-08-30T22:27:19,026 running install_egg_info 2025-08-30T22:27:19,066 running egg_info 2025-08-30T22:27:19,093 writing panCG.egg-info/PKG-INFO 2025-08-30T22:27:19,097 writing dependency_links to panCG.egg-info/dependency_links.txt 2025-08-30T22:27:19,098 writing entry points to panCG.egg-info/entry_points.txt 2025-08-30T22:27:19,100 writing requirements to panCG.egg-info/requires.txt 2025-08-30T22:27:19,101 writing top-level names to panCG.egg-info/top_level.txt 2025-08-30T22:27:19,136 reading manifest file 'panCG.egg-info/SOURCES.txt' 2025-08-30T22:27:19,140 adding license file 'LICENSE' 2025-08-30T22:27:19,144 writing manifest file 'panCG.egg-info/SOURCES.txt' 2025-08-30T22:27:19,146 Copying panCG.egg-info to build/bdist.linux-armv7l/wheel/./panCG-0.0.2-py3.11.egg-info 2025-08-30T22:27:19,157 running install_scripts 2025-08-30T22:27:19,158 creating build/bdist.linux-armv7l/wheel/pancg-0.0.2.data/scripts 2025-08-30T22:27:19,160 copying build/scripts-3.11/CNS.anno.R -> build/bdist.linux-armv7l/wheel/pancg-0.0.2.data/scripts 2025-08-30T22:27:19,162 changing mode of build/bdist.linux-armv7l/wheel/pancg-0.0.2.data/scripts/CNS.anno.R to 755 2025-08-30T22:27:19,176 creating build/bdist.linux-armv7l/wheel/pancg-0.0.2.dist-info/WHEEL 2025-08-30T22:27:19,179 creating '/tmp/pip-wheel-wum9nfsm/pancg-0.0.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-08-30T22:27:19,182 adding 'panCG/__init__.py' 2025-08-30T22:27:19,186 adding 'panCG/panCG.py' 2025-08-30T22:27:19,189 adding 'panCG/bin/CE_RmCDS_to_CNS.py' 2025-08-30T22:27:19,191 adding 'panCG/bin/CEs_identification.py' 2025-08-30T22:27:19,193 adding 'panCG/bin/CnsGeneLink.py' 2025-08-30T22:27:19,195 adding 'panCG/bin/CnsSyntenyNet.py' 2025-08-30T22:27:19,196 adding 'panCG/bin/__init__.py' 2025-08-30T22:27:19,199 adding 'panCG/bin/callCNS.py' 2025-08-30T22:27:19,200 adding 'panCG/bin/cnsClustering.py' 2025-08-30T22:27:19,202 adding 'panCG/bin/cnsLineageSpeciSyn.py' 2025-08-30T22:27:19,203 adding 'panCG/bin/cnsMapMerge.py' 2025-08-30T22:27:19,205 adding 'panCG/bin/cnsRecall.py' 2025-08-30T22:27:19,207 adding 'panCG/bin/geneClustering.py' 2025-08-30T22:27:19,209 adding 'panCG/bin/geneLineageSpeciSyn.py' 2025-08-30T22:27:19,210 adding 'panCG/bin/geneMapMerge.py' 2025-08-30T22:27:19,212 adding 'panCG/bin/genePAV.py' 2025-08-30T22:27:19,213 adding 'panCG/bin/pancnsAssign.py' 2025-08-30T22:27:19,215 adding 'panCG/bin/pancnsMerge.py' 2025-08-30T22:27:19,217 adding 'panCG/bin/pancnsSort.py' 2025-08-30T22:27:19,218 adding 'panCG/bin/pangeneAssign.py' 2025-08-30T22:27:19,220 adding 'panCG/bin/paralogs.py' 2025-08-30T22:27:19,222 adding 'panCG/lib/CPM.py' 2025-08-30T22:27:19,224 adding 'panCG/lib/CnsCall.py' 2025-08-30T22:27:19,225 adding 'panCG/lib/CnsGeneLink.py' 2025-08-30T22:27:19,227 adding 'panCG/lib/LineageSpecicSynteny.py' 2025-08-30T22:27:19,229 adding 'panCG/lib/PanCnsFilter.py' 2025-08-30T22:27:19,233 adding 'panCG/lib/PanCnsIndex.py' 2025-08-30T22:27:19,238 adding 'panCG/lib/PanGeneIndex.py' 2025-08-30T22:27:19,239 adding 'panCG/lib/PhySynNet.py' 2025-08-30T22:27:19,241 adding 'panCG/lib/__init__.py' 2025-08-30T22:27:19,243 adding 'panCG/lib/base.py' 2025-08-30T22:27:19,245 adding 'panCG/lib/cns_recall.py' 2025-08-30T22:27:19,248 adding 'panCG/lib/indexAssign.py' 2025-08-30T22:27:19,249 adding 'panCG/lib/info.py' 2025-08-30T22:27:19,250 adding 'panCG/lib/sqliteDatabase.py' 2025-08-30T22:27:19,253 adding 'pancg-0.0.2.data/scripts/CNS.anno.R' 2025-08-30T22:27:19,255 adding 'pancg-0.0.2.dist-info/licenses/LICENSE' 2025-08-30T22:27:19,257 adding 'pancg-0.0.2.dist-info/METADATA' 2025-08-30T22:27:19,259 adding 'pancg-0.0.2.dist-info/WHEEL' 2025-08-30T22:27:19,260 adding 'pancg-0.0.2.dist-info/entry_points.txt' 2025-08-30T22:27:19,260 adding 'pancg-0.0.2.dist-info/top_level.txt' 2025-08-30T22:27:19,262 adding 'pancg-0.0.2.dist-info/RECORD' 2025-08-30T22:27:19,264 removing build/bdist.linux-armv7l/wheel 2025-08-30T22:27:19,386 Building wheel for pancg (setup.py): finished with status 'done' 2025-08-30T22:27:19,390 Created wheel for pancg: filename=pancg-0.0.2-py3-none-any.whl size=84402 sha256=faf9ca620ae38ff1b3270ec2838ebbc1eef11e0d81ac3aea0da607c3a9ec37a0 2025-08-30T22:27:19,391 Stored in directory: /tmp/pip-ephem-wheel-cache-5muif25b/wheels/9e/24/1c/6b1c88ecd2c70c86f85bb6851362fe35cd9f1bd935fe176eab 2025-08-30T22:27:19,404 Successfully built pancg 2025-08-30T22:27:19,410 Removed build tracker: '/tmp/pip-build-tracker-lnr_xagx'