2025-08-30T22:32:22,786 Created temporary directory: /tmp/pip-build-tracker-wfn11438
2025-08-30T22:32:22,787 Initialized build tracking at /tmp/pip-build-tracker-wfn11438
2025-08-30T22:32:22,788 Created build tracker: /tmp/pip-build-tracker-wfn11438
2025-08-30T22:32:22,788 Entered build tracker: /tmp/pip-build-tracker-wfn11438
2025-08-30T22:32:22,789 Created temporary directory: /tmp/pip-wheel-m_acdy18
2025-08-30T22:32:22,793 Created temporary directory: /tmp/pip-ephem-wheel-cache-rxtfodbf
2025-08-30T22:32:22,842 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-08-30T22:32:22,845 2 location(s) to search for versions of pancg:
2025-08-30T22:32:22,845 * https://pypi.org/simple/pancg/
2025-08-30T22:32:22,845 * https://www.piwheels.org/simple/pancg/
2025-08-30T22:32:22,845 Fetching project page and analyzing links: https://pypi.org/simple/pancg/
2025-08-30T22:32:22,846 Getting page https://pypi.org/simple/pancg/
2025-08-30T22:32:22,848 Found index url https://pypi.org/simple/
2025-08-30T22:32:22,998 Fetched page https://pypi.org/simple/pancg/ as application/vnd.pypi.simple.v1+json
2025-08-30T22:32:23,000   Skipping link: No binaries permitted for pancg: https://files.pythonhosted.org/packages/a2/45/e3fd5cd4a56e69b291ff5e519bf346b77609742bd8ef66ae61dce7961871/panCG-0.0.1-py3-none-any.whl (from https://pypi.org/simple/pancg/)
2025-08-30T22:32:23,000   Found link https://files.pythonhosted.org/packages/f6/bb/7c1262dc432abdbdfd2aba18ca30abd9c9ac4aa8a218d96cdde85429cfd1/panCG-0.0.1.tar.gz (from https://pypi.org/simple/pancg/), version: 0.0.1
2025-08-30T22:32:23,001   Skipping link: No binaries permitted for pancg: https://files.pythonhosted.org/packages/0c/4d/fc54b1f1f6ae673df2b9561772e2138a0b0029c3f86e7012433ac457b1aa/pancg-0.0.1-py3-none-any.whl (from https://pypi.org/simple/pancg/)
2025-08-30T22:32:23,002   Skipping link: No binaries permitted for pancg: https://files.pythonhosted.org/packages/09/3d/b4ed10d1d0a6ad788488a4433fcf59dd558399c8a6183b3ae8ee89cebc87/panCG-0.0.2-py3-none-any.whl (from https://pypi.org/simple/pancg/)
2025-08-30T22:32:23,002   Found link https://files.pythonhosted.org/packages/65/1d/eab825ad54372ffee87f0d09edc56e8943bf074c0905345c89c8015fa87e/pancg-0.0.2.tar.gz (from https://pypi.org/simple/pancg/), version: 0.0.2
2025-08-30T22:32:23,003   Skipping link: No binaries permitted for pancg: https://files.pythonhosted.org/packages/16/24/a80c172885b2e2881f864c35835b7f0f49d185fb9fc052381b0d0284c805/panCG-0.0.3-py3-none-any.whl (from https://pypi.org/simple/pancg/)
2025-08-30T22:32:23,003   Found link https://files.pythonhosted.org/packages/14/dc/5af263c2f114f390b318cef7d429678753528e03484c0dd833c1d90526de/pancg-0.0.3.tar.gz (from https://pypi.org/simple/pancg/), version: 0.0.3
2025-08-30T22:32:23,004   Skipping link: No binaries permitted for pancg: https://files.pythonhosted.org/packages/54/ca/c32ec74e3a36f89c15c3e93ceddfac96dab5dfddd53271b590ac7646f634/panCG-0.0.4-py3-none-any.whl (from https://pypi.org/simple/pancg/)
2025-08-30T22:32:23,005   Found link https://files.pythonhosted.org/packages/62/fa/65008f0f404edefd52eaa52babfa4fff9874cb06c9eaefe4c74f14822cbf/pancg-0.0.4.tar.gz (from https://pypi.org/simple/pancg/), version: 0.0.4
2025-08-30T22:32:23,005 Fetching project page and analyzing links: https://www.piwheels.org/simple/pancg/
2025-08-30T22:32:23,006 Getting page https://www.piwheels.org/simple/pancg/
2025-08-30T22:32:23,007 Found index url https://www.piwheels.org/simple/
2025-08-30T22:32:23,171 Fetched page https://www.piwheels.org/simple/pancg/ as text/html
2025-08-30T22:32:23,173   Skipping link: No binaries permitted for pancg: https://www.piwheels.org/simple/pancg/pancg-0.0.2-py3-none-any.whl#sha256=faf9ca620ae38ff1b3270ec2838ebbc1eef11e0d81ac3aea0da607c3a9ec37a0 (from https://www.piwheels.org/simple/pancg/)
2025-08-30T22:32:23,174   Skipping link: No binaries permitted for pancg: https://www.piwheels.org/simple/pancg/pancg-0.0.1-py3-none-any.whl#sha256=19103c1af11e38ce849aae162f58e23ac16f541dfc384c48dbfdb7c092fb65ce (from https://www.piwheels.org/simple/pancg/)
2025-08-30T22:32:23,174 Skipping link: not a file: https://www.piwheels.org/simple/pancg/
2025-08-30T22:32:23,175 Skipping link: not a file: https://pypi.org/simple/pancg/
2025-08-30T22:32:23,193 Given no hashes to check 1 links for project 'pancg': discarding no candidates
2025-08-30T22:32:23,195 Collecting pancg==0.0.3
2025-08-30T22:32:23,197   Created temporary directory: /tmp/pip-unpack-ii01403n
2025-08-30T22:32:23,421   Downloading pancg-0.0.3.tar.gz (70 kB)
2025-08-30T22:32:23,580   Added pancg==0.0.3 from https://files.pythonhosted.org/packages/14/dc/5af263c2f114f390b318cef7d429678753528e03484c0dd833c1d90526de/pancg-0.0.3.tar.gz to build tracker '/tmp/pip-build-tracker-wfn11438'
2025-08-30T22:32:23,582   Running setup.py (path:/tmp/pip-wheel-m_acdy18/pancg_37b0910d867f4358bdb4f9b7dbd29072/setup.py) egg_info for package pancg
2025-08-30T22:32:23,583   Created temporary directory: /tmp/pip-pip-egg-info-1lf0d6lt
2025-08-30T22:32:23,583   Preparing metadata (setup.py): started
2025-08-30T22:32:23,584   Running command python setup.py egg_info
2025-08-30T22:32:24,465   running egg_info
2025-08-30T22:32:24,492   creating /tmp/pip-pip-egg-info-1lf0d6lt/panCG.egg-info
2025-08-30T22:32:24,492   writing /tmp/pip-pip-egg-info-1lf0d6lt/panCG.egg-info/PKG-INFO
2025-08-30T22:32:24,496   writing dependency_links to /tmp/pip-pip-egg-info-1lf0d6lt/panCG.egg-info/dependency_links.txt
2025-08-30T22:32:24,498   writing entry points to /tmp/pip-pip-egg-info-1lf0d6lt/panCG.egg-info/entry_points.txt
2025-08-30T22:32:24,499   writing requirements to /tmp/pip-pip-egg-info-1lf0d6lt/panCG.egg-info/requires.txt
2025-08-30T22:32:24,500   writing top-level names to /tmp/pip-pip-egg-info-1lf0d6lt/panCG.egg-info/top_level.txt
2025-08-30T22:32:24,502   writing manifest file '/tmp/pip-pip-egg-info-1lf0d6lt/panCG.egg-info/SOURCES.txt'
2025-08-30T22:32:24,622   reading manifest file '/tmp/pip-pip-egg-info-1lf0d6lt/panCG.egg-info/SOURCES.txt'
2025-08-30T22:32:24,624   adding license file 'LICENSE'
2025-08-30T22:32:24,627   writing manifest file '/tmp/pip-pip-egg-info-1lf0d6lt/panCG.egg-info/SOURCES.txt'
2025-08-30T22:32:24,732   Preparing metadata (setup.py): finished with status 'done'
2025-08-30T22:32:24,737   Source in /tmp/pip-wheel-m_acdy18/pancg_37b0910d867f4358bdb4f9b7dbd29072 has version 0.0.3, which satisfies requirement pancg==0.0.3 from https://files.pythonhosted.org/packages/14/dc/5af263c2f114f390b318cef7d429678753528e03484c0dd833c1d90526de/pancg-0.0.3.tar.gz
2025-08-30T22:32:24,738   Removed pancg==0.0.3 from https://files.pythonhosted.org/packages/14/dc/5af263c2f114f390b318cef7d429678753528e03484c0dd833c1d90526de/pancg-0.0.3.tar.gz from build tracker '/tmp/pip-build-tracker-wfn11438'
2025-08-30T22:32:24,746 Created temporary directory: /tmp/pip-unpack-a4kppben
2025-08-30T22:32:24,748 Created temporary directory: /tmp/pip-unpack-7bw_laia
2025-08-30T22:32:24,748 Building wheels for collected packages: pancg
2025-08-30T22:32:24,752   Created temporary directory: /tmp/pip-wheel-szedvltw
2025-08-30T22:32:24,753   DEPRECATION: Building 'pancg' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'pancg'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2025-08-30T22:32:24,754   Building wheel for pancg (setup.py): started
2025-08-30T22:32:24,755   Destination directory: /tmp/pip-wheel-szedvltw
2025-08-30T22:32:24,756   Running command python setup.py bdist_wheel
2025-08-30T22:32:25,565   running bdist_wheel
2025-08-30T22:32:25,693   running build
2025-08-30T22:32:25,694   running build_py
2025-08-30T22:32:25,723   creating build/lib/panCG
2025-08-30T22:32:25,725   copying panCG/__init__.py -> build/lib/panCG
2025-08-30T22:32:25,728   copying panCG/panCG.py -> build/lib/panCG
2025-08-30T22:32:25,731   creating build/lib/panCG/bin
2025-08-30T22:32:25,733   copying panCG/bin/cnsClustering.py -> build/lib/panCG/bin
2025-08-30T22:32:25,735   copying panCG/bin/__init__.py -> build/lib/panCG/bin
2025-08-30T22:32:25,737   copying panCG/bin/geneMapMerge.py -> build/lib/panCG/bin
2025-08-30T22:32:25,739   copying panCG/bin/CEs_identification.py -> build/lib/panCG/bin
2025-08-30T22:32:25,741   copying panCG/bin/paralogs.py -> build/lib/panCG/bin
2025-08-30T22:32:25,743   copying panCG/bin/cnsLineageSpeciSyn.py -> build/lib/panCG/bin
2025-08-30T22:32:25,745   copying panCG/bin/CE_RmCDS_to_CNS.py -> build/lib/panCG/bin
2025-08-30T22:32:25,747   copying panCG/bin/genePAV.py -> build/lib/panCG/bin
2025-08-30T22:32:25,749   copying panCG/bin/pangeneAssign.py -> build/lib/panCG/bin
2025-08-30T22:32:25,751   copying panCG/bin/geneClustering.py -> build/lib/panCG/bin
2025-08-30T22:32:25,753   copying panCG/bin/cnsMapMerge.py -> build/lib/panCG/bin
2025-08-30T22:32:25,755   copying panCG/bin/geneLineageSpeciSyn.py -> build/lib/panCG/bin
2025-08-30T22:32:25,757   copying panCG/bin/pancnsMerge.py -> build/lib/panCG/bin
2025-08-30T22:32:25,760   copying panCG/bin/callCNS.py -> build/lib/panCG/bin
2025-08-30T22:32:25,762   copying panCG/bin/pancnsAssign.py -> build/lib/panCG/bin
2025-08-30T22:32:25,764   copying panCG/bin/CnsGeneLink.py -> build/lib/panCG/bin
2025-08-30T22:32:25,766   copying panCG/bin/cnsRecall.py -> build/lib/panCG/bin
2025-08-30T22:32:25,769   copying panCG/bin/CnsSyntenyNet.py -> build/lib/panCG/bin
2025-08-30T22:32:25,771   copying panCG/bin/pancnsSort.py -> build/lib/panCG/bin
2025-08-30T22:32:25,774   creating build/lib/panCG/lib
2025-08-30T22:32:25,775   copying panCG/lib/cns_recall.py -> build/lib/panCG/lib
2025-08-30T22:32:25,777   copying panCG/lib/__init__.py -> build/lib/panCG/lib
2025-08-30T22:32:25,779   copying panCG/lib/base.py -> build/lib/panCG/lib
2025-08-30T22:32:25,781   copying panCG/lib/pancns.py -> build/lib/panCG/lib
2025-08-30T22:32:25,784   copying panCG/lib/PhySynNet.py -> build/lib/panCG/lib
2025-08-30T22:32:25,786   copying panCG/lib/CPM.py -> build/lib/panCG/lib
2025-08-30T22:32:25,789   copying panCG/lib/pancnsFilter.py -> build/lib/panCG/lib
2025-08-30T22:32:25,791   copying panCG/lib/sqliteDatabase.py -> build/lib/panCG/lib
2025-08-30T22:32:25,793   copying panCG/lib/indexAssign.py -> build/lib/panCG/lib
2025-08-30T22:32:25,795   copying panCG/lib/info.py -> build/lib/panCG/lib
2025-08-30T22:32:25,797   copying panCG/lib/pangeneIndex.py -> build/lib/panCG/lib
2025-08-30T22:32:25,800   copying panCG/lib/LineageSpecicSynteny.py -> build/lib/panCG/lib
2025-08-30T22:32:25,802   copying panCG/lib/CnsGeneLink.py -> build/lib/panCG/lib
2025-08-30T22:32:25,804   copying panCG/lib/CnsCall.py -> build/lib/panCG/lib
2025-08-30T22:32:25,810   running build_scripts
2025-08-30T22:32:25,810   creating build/scripts-3.11
2025-08-30T22:32:25,812   copying panCG/scripts/CNS.anno.R -> build/scripts-3.11
2025-08-30T22:32:25,814   changing mode of build/scripts-3.11/CNS.anno.R from 644 to 755
2025-08-30T22:32:25,841   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-08-30T22:32:25,842   !!

2025-08-30T22:32:25,843           ********************************************************************************
2025-08-30T22:32:25,844           Please avoid running ``setup.py`` directly.
2025-08-30T22:32:25,844           Instead, use pypa/build, pypa/installer or other
2025-08-30T22:32:25,845           standards-based tools.

2025-08-30T22:32:25,846           By 2025-Oct-31, you need to update your project and remove deprecated calls
2025-08-30T22:32:25,846           or your builds will no longer be supported.

2025-08-30T22:32:25,847           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-08-30T22:32:25,848           ********************************************************************************

2025-08-30T22:32:25,849   !!
2025-08-30T22:32:25,850     self.initialize_options()
2025-08-30T22:32:25,869   installing to build/bdist.linux-armv7l/wheel
2025-08-30T22:32:25,870   running install
2025-08-30T22:32:25,894   running install_lib
2025-08-30T22:32:25,920   creating build/bdist.linux-armv7l/wheel
2025-08-30T22:32:25,922   creating build/bdist.linux-armv7l/wheel/panCG
2025-08-30T22:32:25,923   copying build/lib/panCG/__init__.py -> build/bdist.linux-armv7l/wheel/./panCG
2025-08-30T22:32:25,926   creating build/bdist.linux-armv7l/wheel/panCG/bin
2025-08-30T22:32:25,927   copying build/lib/panCG/bin/cnsClustering.py -> build/bdist.linux-armv7l/wheel/./panCG/bin
2025-08-30T22:32:25,929   copying build/lib/panCG/bin/__init__.py -> build/bdist.linux-armv7l/wheel/./panCG/bin
2025-08-30T22:32:25,931   copying build/lib/panCG/bin/geneMapMerge.py -> build/bdist.linux-armv7l/wheel/./panCG/bin
2025-08-30T22:32:25,933   copying build/lib/panCG/bin/CEs_identification.py -> build/bdist.linux-armv7l/wheel/./panCG/bin
2025-08-30T22:32:25,935   copying build/lib/panCG/bin/paralogs.py -> build/bdist.linux-armv7l/wheel/./panCG/bin
2025-08-30T22:32:25,937   copying build/lib/panCG/bin/cnsLineageSpeciSyn.py -> build/bdist.linux-armv7l/wheel/./panCG/bin
2025-08-30T22:32:25,939   copying build/lib/panCG/bin/CE_RmCDS_to_CNS.py -> build/bdist.linux-armv7l/wheel/./panCG/bin
2025-08-30T22:32:25,940   copying build/lib/panCG/bin/genePAV.py -> build/bdist.linux-armv7l/wheel/./panCG/bin
2025-08-30T22:32:25,942   copying build/lib/panCG/bin/pangeneAssign.py -> build/bdist.linux-armv7l/wheel/./panCG/bin
2025-08-30T22:32:25,945   copying build/lib/panCG/bin/geneClustering.py -> build/bdist.linux-armv7l/wheel/./panCG/bin
2025-08-30T22:32:25,946   copying build/lib/panCG/bin/cnsMapMerge.py -> build/bdist.linux-armv7l/wheel/./panCG/bin
2025-08-30T22:32:25,949   copying build/lib/panCG/bin/geneLineageSpeciSyn.py -> build/bdist.linux-armv7l/wheel/./panCG/bin
2025-08-30T22:32:25,951   copying build/lib/panCG/bin/pancnsMerge.py -> build/bdist.linux-armv7l/wheel/./panCG/bin
2025-08-30T22:32:25,954   copying build/lib/panCG/bin/callCNS.py -> build/bdist.linux-armv7l/wheel/./panCG/bin
2025-08-30T22:32:25,956   copying build/lib/panCG/bin/pancnsAssign.py -> build/bdist.linux-armv7l/wheel/./panCG/bin
2025-08-30T22:32:25,958   copying build/lib/panCG/bin/CnsGeneLink.py -> build/bdist.linux-armv7l/wheel/./panCG/bin
2025-08-30T22:32:25,960   copying build/lib/panCG/bin/cnsRecall.py -> build/bdist.linux-armv7l/wheel/./panCG/bin
2025-08-30T22:32:25,963   copying build/lib/panCG/bin/CnsSyntenyNet.py -> build/bdist.linux-armv7l/wheel/./panCG/bin
2025-08-30T22:32:25,964   copying build/lib/panCG/bin/pancnsSort.py -> build/bdist.linux-armv7l/wheel/./panCG/bin
2025-08-30T22:32:25,967   creating build/bdist.linux-armv7l/wheel/panCG/lib
2025-08-30T22:32:25,968   copying build/lib/panCG/lib/cns_recall.py -> build/bdist.linux-armv7l/wheel/./panCG/lib
2025-08-30T22:32:25,971   copying build/lib/panCG/lib/__init__.py -> build/bdist.linux-armv7l/wheel/./panCG/lib
2025-08-30T22:32:25,973   copying build/lib/panCG/lib/base.py -> build/bdist.linux-armv7l/wheel/./panCG/lib
2025-08-30T22:32:25,975   copying build/lib/panCG/lib/pancns.py -> build/bdist.linux-armv7l/wheel/./panCG/lib
2025-08-30T22:32:25,978   copying build/lib/panCG/lib/PhySynNet.py -> build/bdist.linux-armv7l/wheel/./panCG/lib
2025-08-30T22:32:25,981   copying build/lib/panCG/lib/CPM.py -> build/bdist.linux-armv7l/wheel/./panCG/lib
2025-08-30T22:32:25,983   copying build/lib/panCG/lib/pancnsFilter.py -> build/bdist.linux-armv7l/wheel/./panCG/lib
2025-08-30T22:32:25,985   copying build/lib/panCG/lib/sqliteDatabase.py -> build/bdist.linux-armv7l/wheel/./panCG/lib
2025-08-30T22:32:25,987   copying build/lib/panCG/lib/indexAssign.py -> build/bdist.linux-armv7l/wheel/./panCG/lib
2025-08-30T22:32:25,990   copying build/lib/panCG/lib/info.py -> build/bdist.linux-armv7l/wheel/./panCG/lib
2025-08-30T22:32:25,991   copying build/lib/panCG/lib/pangeneIndex.py -> build/bdist.linux-armv7l/wheel/./panCG/lib
2025-08-30T22:32:25,994   copying build/lib/panCG/lib/LineageSpecicSynteny.py -> build/bdist.linux-armv7l/wheel/./panCG/lib
2025-08-30T22:32:25,997   copying build/lib/panCG/lib/CnsGeneLink.py -> build/bdist.linux-armv7l/wheel/./panCG/lib
2025-08-30T22:32:25,999   copying build/lib/panCG/lib/CnsCall.py -> build/bdist.linux-armv7l/wheel/./panCG/lib
2025-08-30T22:32:26,001   copying build/lib/panCG/panCG.py -> build/bdist.linux-armv7l/wheel/./panCG
2025-08-30T22:32:26,004   running install_egg_info
2025-08-30T22:32:26,038   running egg_info
2025-08-30T22:32:26,064   writing panCG.egg-info/PKG-INFO
2025-08-30T22:32:26,067   writing dependency_links to panCG.egg-info/dependency_links.txt
2025-08-30T22:32:26,068   writing entry points to panCG.egg-info/entry_points.txt
2025-08-30T22:32:26,070   writing requirements to panCG.egg-info/requires.txt
2025-08-30T22:32:26,071   writing top-level names to panCG.egg-info/top_level.txt
2025-08-30T22:32:26,103   reading manifest file 'panCG.egg-info/SOURCES.txt'
2025-08-30T22:32:26,107   adding license file 'LICENSE'
2025-08-30T22:32:26,111   writing manifest file 'panCG.egg-info/SOURCES.txt'
2025-08-30T22:32:26,112   Copying panCG.egg-info to build/bdist.linux-armv7l/wheel/./panCG-0.0.3-py3.11.egg-info
2025-08-30T22:32:26,124   running install_scripts
2025-08-30T22:32:26,125   creating build/bdist.linux-armv7l/wheel/pancg-0.0.3.data/scripts
2025-08-30T22:32:26,127   copying build/scripts-3.11/CNS.anno.R -> build/bdist.linux-armv7l/wheel/pancg-0.0.3.data/scripts
2025-08-30T22:32:26,128   changing mode of build/bdist.linux-armv7l/wheel/pancg-0.0.3.data/scripts/CNS.anno.R to 755
2025-08-30T22:32:26,142   creating build/bdist.linux-armv7l/wheel/pancg-0.0.3.dist-info/WHEEL
2025-08-30T22:32:26,144   creating '/tmp/pip-wheel-szedvltw/pancg-0.0.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-08-30T22:32:26,146   adding 'panCG/__init__.py'
2025-08-30T22:32:26,149   adding 'panCG/panCG.py'
2025-08-30T22:32:26,152   adding 'panCG/bin/CE_RmCDS_to_CNS.py'
2025-08-30T22:32:26,153   adding 'panCG/bin/CEs_identification.py'
2025-08-30T22:32:26,155   adding 'panCG/bin/CnsGeneLink.py'
2025-08-30T22:32:26,157   adding 'panCG/bin/CnsSyntenyNet.py'
2025-08-30T22:32:26,158   adding 'panCG/bin/__init__.py'
2025-08-30T22:32:26,160   adding 'panCG/bin/callCNS.py'
2025-08-30T22:32:26,162   adding 'panCG/bin/cnsClustering.py'
2025-08-30T22:32:26,163   adding 'panCG/bin/cnsLineageSpeciSyn.py'
2025-08-30T22:32:26,165   adding 'panCG/bin/cnsMapMerge.py'
2025-08-30T22:32:26,167   adding 'panCG/bin/cnsRecall.py'
2025-08-30T22:32:26,168   adding 'panCG/bin/geneClustering.py'
2025-08-30T22:32:26,170   adding 'panCG/bin/geneLineageSpeciSyn.py'
2025-08-30T22:32:26,171   adding 'panCG/bin/geneMapMerge.py'
2025-08-30T22:32:26,172   adding 'panCG/bin/genePAV.py'
2025-08-30T22:32:26,174   adding 'panCG/bin/pancnsAssign.py'
2025-08-30T22:32:26,176   adding 'panCG/bin/pancnsMerge.py'
2025-08-30T22:32:26,177   adding 'panCG/bin/pancnsSort.py'
2025-08-30T22:32:26,179   adding 'panCG/bin/pangeneAssign.py'
2025-08-30T22:32:26,180   adding 'panCG/bin/paralogs.py'
2025-08-30T22:32:26,182   adding 'panCG/lib/CPM.py'
2025-08-30T22:32:26,184   adding 'panCG/lib/CnsCall.py'
2025-08-30T22:32:26,185   adding 'panCG/lib/CnsGeneLink.py'
2025-08-30T22:32:26,187   adding 'panCG/lib/LineageSpecicSynteny.py'
2025-08-30T22:32:26,188   adding 'panCG/lib/PhySynNet.py'
2025-08-30T22:32:26,189   adding 'panCG/lib/__init__.py'
2025-08-30T22:32:26,192   adding 'panCG/lib/base.py'
2025-08-30T22:32:26,194   adding 'panCG/lib/cns_recall.py'
2025-08-30T22:32:26,196   adding 'panCG/lib/indexAssign.py'
2025-08-30T22:32:26,197   adding 'panCG/lib/info.py'
2025-08-30T22:32:26,201   adding 'panCG/lib/pancns.py'
2025-08-30T22:32:26,203   adding 'panCG/lib/pancnsFilter.py'
2025-08-30T22:32:26,206   adding 'panCG/lib/pangeneIndex.py'
2025-08-30T22:32:26,208   adding 'panCG/lib/sqliteDatabase.py'
2025-08-30T22:32:26,210   adding 'pancg-0.0.3.data/scripts/CNS.anno.R'
2025-08-30T22:32:26,212   adding 'pancg-0.0.3.dist-info/licenses/LICENSE'
2025-08-30T22:32:26,214   adding 'pancg-0.0.3.dist-info/METADATA'
2025-08-30T22:32:26,215   adding 'pancg-0.0.3.dist-info/WHEEL'
2025-08-30T22:32:26,216   adding 'pancg-0.0.3.dist-info/entry_points.txt'
2025-08-30T22:32:26,217   adding 'pancg-0.0.3.dist-info/top_level.txt'
2025-08-30T22:32:26,218   adding 'pancg-0.0.3.dist-info/RECORD'
2025-08-30T22:32:26,221   removing build/bdist.linux-armv7l/wheel
2025-08-30T22:32:26,339   Building wheel for pancg (setup.py): finished with status 'done'
2025-08-30T22:32:26,342   Created wheel for pancg: filename=pancg-0.0.3-py3-none-any.whl size=84282 sha256=4d7ceb30ba4239f094870d2a2cf58ccabc577bb1b73f2dfc89cceaaa8aca3c0b
2025-08-30T22:32:26,343   Stored in directory: /tmp/pip-ephem-wheel-cache-rxtfodbf/wheels/08/f3/eb/1877d0734387245d504a911dd49f9c07e30fddb3158a56c472
2025-08-30T22:32:26,356 Successfully built pancg
2025-08-30T22:32:26,363 Removed build tracker: '/tmp/pip-build-tracker-wfn11438'